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Your search keyword '"Groso, Daniel"' showing total 4 results
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4 results on '"Groso, Daniel"'

1. pgMAP: a pipeline to enable guide RNA read mapping from dual-targeting CRISPR screens

Author

Parrish, Phoebe C. R., Groso, Daniel J., Thomas, James D., Bradley, Robert K., and Berger, Alice H.

Subjects
Quantitative Biology - Genomics
Abstract

We developed pgMAP, an analysis pipeline to map gRNA sequencing reads from dual-targeting CRISPR screens. pgMAP output includes a dual gRNA read counts table and quality control metrics including the proportion of correctly-paired reads and CRISPR library sequencing coverage across all time points and samples. pgMAP is implemented using Snakemake and is available open-source under the MIT license at https://github.com/fredhutch/pgmap_pipeline., Comment: 6 pages, 1 figure, code available at https://github.com/fredhutch/pgmap_pipeline

Published
2023

4. pgMAP: a pipeline to enable guide RNA read mapping from dual-targeting CRISPR screens.

Author

Parrish PCR, Groso DJ, Thomas JD, Bradley RK, and Berger AH

Abstract

We developed pgMAP, an analysis pipeline to map gRNA sequencing reads from dual-targeting CRISPR screens. pgMAP output includes a dual gRNA read counts table and quality control metrics including the proportion of correctly-paired reads and CRISPR library sequencing coverage across all time points and samples. pgMAP is implemented using Snakemake and is available open-source under the MIT license at https://github.com/fredhutch/pgmap_pipeline.

Published
2023

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