8 results on '"Gregor, Benjamin W."'
Search Results
2. Integrated intracellular organization and its variations in human iPS cells
- Author
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Viana, Matheus P., Chen, Jianxu, Knijnenburg, Theo A., Vasan, Ritvik, Yan, Calysta, Arakaki, Joy E., Bailey, Matte, Berry, Ben, Borensztejn, Antoine, Brown, Eva M., Carlson, Sara, Cass, Julie A., Chaudhuri, Basudev, Cordes Metzler, Kimberly R., Coston, Mackenzie E., Crabtree, Zach J., Davidson, Steve, DeLizo, Colette M., Dhaka, Shailja, Dinh, Stephanie Q., Do, Thao P., Domingus, Justin, Donovan-Maiye, Rory M., Ferrante, Alexandra J., Foster, Tyler J., Frick, Christopher L., Fujioka, Griffin, Fuqua, Margaret A., Gehring, Jamie L., Gerbin, Kaytlyn A., Grancharova, Tanya, Gregor, Benjamin W., Harrylock, Lisa J., Haupt, Amanda, Hendershott, Melissa C., Hookway, Caroline, Horwitz, Alan R., Hughes, H. Christopher, Isaac, Eric J., Johnson, Gregory R., Kim, Brian, Leonard, Andrew N., Leung, Winnie W., Lucas, Jordan J., Ludmann, Susan A., Lyons, Blair M., Malik, Haseeb, McGregor, Ryan, Medrash, Gabe E., Meharry, Sean L., Mitcham, Kevin, Mueller, Irina A., Murphy-Stevens, Timothy L., Nath, Aditya, Nelson, Angelique M., Oluoch, Sandra A., Paleologu, Luana, Popiel, T. Alexander, Riel-Mehan, Megan M., Roberts, Brock, Schaefbauer, Lisa M., Schwarzl, Magdalena, Sherman, Jamie, Slaton, Sylvain, Sluzewski, M. Filip, Smith, Jacqueline E., Sul, Youngmee, Swain-Bowden, Madison J., Tang, W. Joyce, Thirstrup, Derek J., Toloudis, Daniel M., Tucker, Andrew P., Valencia, Veronica, Wiegraebe, Winfried, Wijeratna, Thushara, Yang, Ruian, Zaunbrecher, Rebecca J., Labitigan, Ramon Lorenzo D., Sanborn, Adrian L., Johnson, Graham T., Gunawardane, Ruwanthi N., Gaudreault, Nathalie, Theriot, Julie A., and Rafelski, Susanne M.
- Published
- 2023
- Full Text
- View/download PDF
3. Transcriptional landscape of the prenatal human brain.
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Miller, Jeremy A, Ding, Song-Lin, Sunkin, Susan M, Smith, Kimberly A, Ng, Lydia, Szafer, Aaron, Ebbert, Amanda, Riley, Zackery L, Royall, Joshua J, Aiona, Kaylynn, Arnold, James M, Bennet, Crissa, Bertagnolli, Darren, Brouner, Krissy, Butler, Stephanie, Caldejon, Shiella, Carey, Anita, Cuhaciyan, Christine, Dalley, Rachel A, Dee, Nick, Dolbeare, Tim A, Facer, Benjamin AC, Feng, David, Fliss, Tim P, Gee, Garrett, Goldy, Jeff, Gourley, Lindsey, Gregor, Benjamin W, Gu, Guangyu, Howard, Robert E, Jochim, Jayson M, Kuan, Chihchau L, Lau, Christopher, Lee, Chang-Kyu, Lee, Felix, Lemon, Tracy A, Lesnar, Phil, McMurray, Bergen, Mastan, Naveed, Mosqueda, Nerick, Naluai-Cecchini, Theresa, Ngo, Nhan-Kiet, Nyhus, Julie, Oldre, Aaron, Olson, Eric, Parente, Jody, Parker, Patrick D, Parry, Sheana E, Stevens, Allison, Pletikos, Mihovil, Reding, Melissa, Roll, Kate, Sandman, David, Sarreal, Melaine, Shapouri, Sheila, Shapovalova, Nadiya V, Shen, Elaine H, Sjoquist, Nathan, Slaughterbeck, Clifford R, Smith, Michael, Sodt, Andy J, Williams, Derric, Zöllei, Lilla, Fischl, Bruce, Gerstein, Mark B, Geschwind, Daniel H, Glass, Ian A, Hawrylycz, Michael J, Hevner, Robert F, Huang, Hao, Jones, Allan R, Knowles, James A, Levitt, Pat, Phillips, John W, Sestan, Nenad, Wohnoutka, Paul, Dang, Chinh, Bernard, Amy, Hohmann, John G, and Lein, Ed S
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Brain ,Neocortex ,Fetus ,Animals ,Humans ,Mice ,Anatomy ,Artistic ,Species Specificity ,Gene Expression Regulation ,Developmental ,Conserved Sequence ,Gene Regulatory Networks ,Atlases as Topic ,Transcriptome ,Anatomy ,Artistic ,Gene Expression Regulation ,Developmental ,General Science & Technology - Abstract
The anatomical and functional architecture of the human brain is mainly determined by prenatal transcriptional processes. We describe an anatomically comprehensive atlas of the mid-gestational human brain, including de novo reference atlases, in situ hybridization, ultra-high-resolution magnetic resonance imaging (MRI) and microarray analysis on highly discrete laser-microdissected brain regions. In developing cerebral cortex, transcriptional differences are found between different proliferative and post-mitotic layers, wherein laminar signatures reflect cellular composition and developmental processes. Cytoarchitectural differences between human and mouse have molecular correlates, including species differences in gene expression in subplate, although surprisingly we find minimal differences between the inner and outer subventricular zones even though the outer zone is expanded in humans. Both germinal and post-mitotic cortical layers exhibit fronto-temporal gradients, with particular enrichment in the frontal lobe. Finally, many neurodevelopmental disorder and human-evolution-related genes show patterned expression, potentially underlying unique features of human cortical formation. These data provide a rich, freely-accessible resource for understanding human brain development.
- Published
- 2014
4. Automated human induced pluripotent stem cell culture and sample preparation for 3D live-cell microscopy
- Author
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Gregor, Benjamin W., primary, Coston, Mackenzie E., additional, Adams, Ellen M., additional, Arakaki, Joy, additional, Borensztejn, Antoine, additional, Do, Thao P., additional, Fuqua, Margaret A., additional, Haupt, Amanda, additional, Hendershott, Melissa C., additional, Leung, Winnie, additional, Mueller, Irina A., additional, Nath, Aditya, additional, Nelson, Angelique M., additional, Rafelski, Susanne M., additional, Sanchez, Emmanuel E., additional, Swain-Bowden, Madison J., additional, Tang, W. Joyce, additional, Thirstrup, Derek J., additional, Wiegraebe, Winfried, additional, Whitney, Brian P., additional, Yan, Calysta, additional, Gunawardane, Ruwanthi N., additional, and Gaudreault, Nathalie, additional
- Published
- 2023
- Full Text
- View/download PDF
5. An anatomically comprehensive atlas of the adult human brain transcriptome
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Hawrylycz, Michael J., Lein, Ed S., Guillozet-Bongaarts, Angela L., Shen, Elaine H., Ng, Lydia, Miller, Jeremy A., van de Lagemaat, Louie N., Smith, Kimberly A., Ebbert, Amanda, Riley, Zackery L., Abajian, Chris, Beckmann, Christian F., Bernard, Amy, Bertagnolli, Darren, Boe, Andrew F., Cartagena, Preston M., Chakravarty, Mallar M., Chapin, Mike, Chong, Jimmy, Dalley, Rachel A., Daly, Barry David, Dang, Chinh, Datta, Suvro, Dee, Nick, Dolbeare, Tim A., Faber, Vance, Feng, David, Fowler, David R., Goldy, Jeff, Gregor, Benjamin W., Haradon, Zeb, Haynor, David R., Hohmann, John G., Horvath, Steve, Howard, Robert E., Jeromin, Andreas, Jochim, Jayson M., Kinnunen, Marty, Lau, Christopher, Lazarz, Evan T., Lee, Changkyu, Lemon, Tracy A., Li, Ling, Li, Yang, Morris, John A., Overly, Caroline C., Parker, Patrick D., Parry, Sheana E., Reding, Melissa, Royall, Joshua J., Schulkin, Jay, Sequeira, Pedro Adolfo, Slaughterbeck, Clifford R., Smith, Simon C., Sodt, Andy J., Sunkin, Susan M., Swanson, Beryl E., Vawter, Marquis P., Williams, Derric, Wohnoutka, Paul, Zielke, Ronald H., Geschwind, Daniel H., Hof, Patrick R., Smith, Stephen M., Koch, Christof, Grant, Seth G. N., and Jones, Allan R.
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- 2012
- Full Text
- View/download PDF
6. Automated hiPSC culture and sample preparation for 3D live cell microscopy
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Coston, Mackenzie E., primary, Gregor, Benjamin W., additional, Arakaki, Joy, additional, Borensztejn, Antoine, additional, Do, Thao P., additional, Fuqua, Margaret A., additional, Haupt, Amanda, additional, Hendershott, Melissa C., additional, Leung, Winnie, additional, Mueller, Irina A., additional, Nelson, Angelique M., additional, Rafelski, Susanne M., additional, Swain-Bowden, Madison J., additional, Tang, W. Joyce, additional, Thirstrup, Derek J., additional, Wiegraebe, Winfried, additional, Yan, Calysta, additional, Gunawardane, Ruwanthi N, additional, and Gaudreault, Nathalie, additional
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- 2020
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7. An anatomic transcriptional atlas of human glioblastoma
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Puchalski, Ralph B., primary, Shah, Nameeta, additional, Miller, Jeremy, additional, Dalley, Rachel, additional, Nomura, Steve R., additional, Yoon, Jae-Guen, additional, Smith, Kimberly A., additional, Lankerovich, Michael, additional, Bertagnolli, Darren, additional, Bickley, Kris, additional, Boe, Andrew F., additional, Brouner, Krissy, additional, Butler, Stephanie, additional, Caldejon, Shiella, additional, Chapin, Mike, additional, Datta, Suvro, additional, Dee, Nick, additional, Desta, Tsega, additional, Dolbeare, Tim, additional, Dotson, Nadezhda, additional, Ebbert, Amanda, additional, Feng, David, additional, Feng, Xu, additional, Fisher, Michael, additional, Gee, Garrett, additional, Goldy, Jeff, additional, Gourley, Lindsey, additional, Gregor, Benjamin W., additional, Gu, Guangyu, additional, Hejazinia, Nika, additional, Hohmann, John, additional, Hothi, Parvinder, additional, Howard, Robert, additional, Joines, Kevin, additional, Kriedberg, Ali, additional, Kuan, Leonard, additional, Lau, Chris, additional, Lee, Felix, additional, Lee, Hwahyung, additional, Lemon, Tracy, additional, Long, Fuhui, additional, Mastan, Naveed, additional, Mott, Erika, additional, Murthy, Chantal, additional, Ngo, Kiet, additional, Olson, Eric, additional, Reding, Melissa, additional, Riley, Zack, additional, Rosen, David, additional, Sandman, David, additional, Shapovalova, Nadiya, additional, Slaughterbeck, Clifford R., additional, Sodt, Andrew, additional, Stockdale, Graham, additional, Szafer, Aaron, additional, Wakeman, Wayne, additional, Wohnoutka, Paul E., additional, White, Steven J., additional, Marsh, Don, additional, Rostomily, Robert C., additional, Ng, Lydia, additional, Dang, Chinh, additional, Jones, Allan, additional, Keogh, Bart, additional, Gittleman, Haley R., additional, Barnholtz-Sloan, Jill S., additional, Cimino, Patrick J., additional, Uppin, Megha S., additional, Keene, C. Dirk, additional, Farrokhi, Farrokh R., additional, Lathia, Justin D., additional, Berens, Michael E., additional, Iavarone, Antonio, additional, Bernard, Amy, additional, Lein, Ed, additional, Phillips, John W., additional, Rostad, Steven W., additional, Cobbs, Charles, additional, Hawrylycz, Michael J., additional, and Foltz, Greg D., additional
- Published
- 2018
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8. Transcriptional Landscape of the Prenatal Human Brain
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Miller, Jeremy A., Ding, Song-Lin, Sunkin, Susan M., Smith, Kimberly A, Ng, Lydia, Szafer, Aaron, Ebbert, Amanda, Riley, Zackery L., Aiona, Kaylynn, Arnold, James M., Bennet, Crissa, Bertagnolli, Darren, Brouner, Krissy, Butler, Stephanie, Caldejon, Shiella, Carey, Anita, Cuhaciyan, Christine, Dalley, Rachel A., Dee, Nick, Dolbeare, Tim A., Facer, Benjamin A. C., Feng, David, Fliss, Tim P., Gee, Garrett, Goldy, Jeff, Gourley, Lindsey, Gregor, Benjamin W., Gu, Guangyu, Howard, Robert E., Jochim, Jayson M., Kuan, Chihchau L., Lau, Christopher, Lee, Chang-Kyu, Lee, Felix, Lemon, Tracy A., Lesnar, Phil, McMurray, Bergen, Mastan, Naveed, Mosqueda, Nerick F., Naluai-Cecchini, Theresa, Ngo, Nhan-Kiet, Nyhus, Julie, Oldre, Aaron, Olson, Eric, Parente, Jody, Parker, Patrick D., Parry, Sheana E., Player, Allison Stevens, Pletikos, Mihovil, Reding, Melissa, Royall, Joshua J., Roll, Kate, Sandman, David, Sarreal, Melaine, Shapouri, Sheila, Shapovalova, Nadiya V., Shen, Elaine H., Sjoquist, Nathan, Slaughterbeck, Clifford R., Smith, Michael, Sodt, Andy J., Williams, Derric, Zöllei, Lilla, Fischl, Bruce, Gerstein, Mark B., Geschwind, Daniel H., Glass, Ian A., Hawrylycz, Michael J., Hevner, Robert F., Huang, Hao, Jones, Allan R., Knowles, James A., Levitt, Pat, Phillips, John W., Sestan, Nenad, Wohnoutka, Paul, Dang, Chinh, Bernard, Amy, Hohmann, John G., and Lein, Ed S.
- Subjects
Human brain ,Transcriptome ,Microarray ,Development ,Gene expression ,Evolution - Abstract
Summary The anatomical and functional architecture of the human brain is largely determined by prenatal transcriptional processes. We describe an anatomically comprehensive atlas of mid-gestational human brain, including de novo reference atlases, in situ hybridization, ultra-high resolution magnetic resonance imaging (MRI) and microarray analysis on highly discrete laser microdissected brain regions. In developing cerebral cortex, transcriptional differences are found between different proliferative and postmitotic layers, wherein laminar signatures reflect cellular composition and developmental processes. Cytoarchitectural differences between human and mouse have molecular correlates, including species differences in gene expression in subplate, although surprisingly we find minimal differences between the inner and human-expanded outer subventricular zones. Both germinal and postmitotic cortical layers exhibit fronto-temporal gradients, with particular enrichment in frontal lobe. Finally, many neurodevelopmental disorder and human evolution-related genes show patterned expression, potentially underlying unique features of human cortical formation. These data provide a rich, freely-accessible resource for understanding human brain development.
- Published
- 2014
- Full Text
- View/download PDF
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