6 results on '"Graphical neural networks"'
Search Results
2. scMGCN: A Multi-View Graph Convolutional Network for Cell Type Identification in scRNA-seq Data.
- Author
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Sun, Hongmin, Qu, Haowen, Duan, Kaifu, and Du, Wei
- Subjects
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RNA sequencing , *ARTIFICIAL intelligence , *MOLECULAR interactions , *CELL populations , *MEDICAL research , *IDENTIFICATION - Abstract
Single-cell RNA sequencing (scRNA-seq) data reveal the complexity and diversity of cellular ecosystems and molecular interactions in various biomedical research. Hence, identifying cell types from large-scale scRNA-seq data using existing annotations is challenging and requires stable and interpretable methods. However, the current cell type identification methods have limited performance, mainly due to the intrinsic heterogeneity among cell populations and extrinsic differences between datasets. Here, we present a robust graph artificial intelligence model, a multi-view graph convolutional network model (scMGCN) that integrates multiple graph structures from raw scRNA-seq data and applies graph convolutional networks with attention mechanisms to learn cell embeddings and predict cell labels. We evaluate our model on single-dataset, cross-species, and cross-platform experiments and compare it with other state-of-the-art methods. Our results show that scMGCN outperforms the other methods regarding stability, accuracy, and robustness to batch effects. Our main contributions are as follows: Firstly, we introduce multi-view learning and multiple graph construction methods to capture comprehensive cellular information from scRNA-seq data. Secondly, we construct a scMGCN that combines graph convolutional networks with attention mechanisms to extract shared, high-order information from cells. Finally, we demonstrate the effectiveness and superiority of the scMGCN on various datasets. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
3. Biologically Inspired Neural Path Finding
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Li, Hang, Khan, Qadeer, Tresp, Volker, Cremers, Daniel, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Mahmud, Mufti, editor, He, Jing, editor, Vassanelli, Stefano, editor, van Zundert, André, editor, and Zhong, Ning, editor
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- 2022
- Full Text
- View/download PDF
4. Weakly Supervised Person Re-ID: Differentiable Graphical Learning and a New Benchmark.
- Author
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Wang, Guangrun, Wang, Guangcong, Zhang, Xujie, Lai, Jianhuang, Yu, Zhengtao, and Lin, Liang
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TASK analysis , *PROBLEM solving , *ANNOTATIONS , *LABELS - Abstract
Person reidentification (Re-ID) benefits greatly from the accurate annotations of existing data sets (e.g., CUHK03 and Market-1501), which are quite expensive because each image in these data sets has to be assigned with a proper label. In this work, we ease the annotation of Re-ID by replacing the accurate annotation with inaccurate annotation, i.e., we group the images into bags in terms of time and assign a bag-level label for each bag. This greatly reduces the annotation effort and leads to the creation of a large-scale Re-ID benchmark called SYSU-30k. The new benchmark contains 30k individuals, which is about 20 times larger than CUHK03 (1.3k individuals) and Market-1501 (1.5k individuals), and 30 times larger than ImageNet (1k categories). It sums up to 29606918 images. Learning a Re-ID model with bag-level annotation is called the weakly supervised Re-ID problem. To solve this problem, we introduce a differentiable graphical model to capture the dependencies from all images in a bag and generate a reliable pseudolabel for each person’s image. The pseudolabel is further used to supervise the learning of the Re-ID model. Compared with the fully supervised Re-ID models, our method achieves state-of-the-art performance on SYSU-30k and other data sets. The code, data set, and pretrained model will be available at https://github.com/wanggrun/SYSU-30k. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
5. FMRG verisinin gecikmeli analizi için bir grafiksel sinir ağı katmanı
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Hasan Atakan Bedel, Irmak Sivgin, Tolga Cukur, Bedel, Hasan Atakan, Şıvgın, Irmak, and Çukur, Tolga
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fMRG ,Grafik sinir ağları ,fMRI ,Deep learning ,Graphical neural networks ,Derin öğrenme - Abstract
Conference Name: 2022 30th Signal Processing and Communications Applications Conference (SIU) Date of Conference: 15-18 May 2022 Functional magnetic resonance imaging (fMRI) enables recording the brain’s neural activity spatiotemporally and is the center of much cutting-edge psychology and neuroscience research. Many methods are proposed to process the 4-dimensional data the fMRI scans provide. The most common approach for classification tasks is to analyze functional connectivity, where brain volume is parcelled to regions, and the correlation between their time series is calculated. Such an approach is very suitable for graphical neural networks, a popular deep learning method for graphical data analysis. A graph is constructed by formulating the parcelled brain regions as the graph nodes, while their features and edges are constructed from the correlations. However, in many studies, the correlations are calculated from simple methods that do not take account of the lagged relations between the node time-series. This paper addresses this issue by proposing a new graphical neural network layer. This layer accounts for lagged relationships between the nodes and learns reacher features rather than simple zero-lag correlations. We show that our graphical layer can be used in front of a known graphical model and increase its performance for two different downstream tasks in a large fMRI dataset. Fonksiyonel manyetik rezonans görüntüleme (fMRG), beyindeki sinirsel etkinliği zamansal ve uzamsal olarak kaydedebilen bir görüntüleme tekniğidir ve yenilikçi psikoloji ve sinirbilimi araştırmalarının merkezindedir. fMRG taramalarının 4 boyutlu verisini işleyebilmek için çeşitli metotlar önerilmiştir. Sınıflandırma çalışmalarında en yaygın olarak kullanılan teknik, beynin bölgelere ayrılması ve bu bölgelerin zaman serileri arasında korelasyon hesaplanmasıyla bulunan fonksiyonel bağlılık ölçütüdür. Söz konusu yaklaşım, grafiksel verilerin derin öğrenme ile işlenmesinde popüler bir teknik olan grafiksel sinir ağlarında kullanmak için uygundur. Grafiksel sinir ağlarında bölünmüş beyin bölgeleri düğümleri oluştururken düğümler arasındaki bağlantılar ve düğümlerin özellik vektörleri korelasyon hesabına dayanır. Çoğu çalışmada bu korelasyon hesabı yapılırken dü- ğümlerin zaman serileri arasındaki gecikmeli ilişkiler göz ardı edilmektedir. Bu makalede önerilen yeni sinirsel ağ katmanıyla gecikmeli ilişkilerin etkisinin incelenmesi hedeflenmiştir. Bu katman düğümler arasında gecikmeli ilişki hesabı yaparak basit, sıfır gecikmeli korelasyona göre daha zengin özellik vektörleri oluşturulmasını sağlar. Bu makaleyle, önerdiğimiz grafiksel katmanın bilinen başka bir grafiksel modelin önüne eklenmesi sonucu performans artımı sağlanabileceğini 2 çalışmayla gösteriyoruz.
- Published
- 2022
6. Face to purchase: Predicting consumer choices with structured facial and behavioral traits embedding.
- Author
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Liu, Zhe, Wang, Xianzhi, Li, Yun, Yao, Lina, An, Jake, Bai, Lei, and Lim, Ee-Peng
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CONSUMER preferences , *CONSUMER behavior , *PERSONALITY , *FACE , *INFORMATION resources , *STRUCTURAL engineering - Abstract
Predicting consumers' purchasing behaviors is critical for targeted advertisement and sales promotion in e-commerce. Human faces are an invaluable source of information for gaining insights into consumer personality and behavioral traits. However, consumer's faces are largely unexplored in previous research, and the existing face-related studies focus on high-level features such as personality traits while neglecting the business significance of learning from facial data. We propose to predict consumers' purchases based on their facial features and purchasing histories. We design a semi-supervised model based on a hierarchical embedding network to extract high-level features of consumers and to predict the top- N purchase destinations of a consumer. Our experimental results on a real-world dataset demonstrate the positive effect of incorporating facial information in predicting consumers' purchasing behaviors. [Display omitted] • A hierarchical model that combines face embedding with structured behavioral traits embedding for purchase prediction. • Feature engineering of structural behavioral traits and multi-faceted face features for generating a graph structure of images. • Selective graph convolution based on Graph Convolutional Network and light Inception for leveraging graph information effectively. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
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