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3. Unraveling phylogenetic relationships and species boundaries in the arid adapted Gerbillus rodents (Muridae: Gerbillinae) by RAD-seq data.

Author

Piwczyński, M, Granjon, L, Trzeciak, P, Carlos Brito, J, Oana Popa, M, Daba Dinka, M, Johnston, NP, Boratyński, Z, Piwczyński, M, Granjon, L, Trzeciak, P, Carlos Brito, J, Oana Popa, M, Daba Dinka, M, Johnston, NP, and Boratyński, Z

Abstract

Gerbillus is one of the most speciose genera among rodents, with ca. 51 recognized species. Previous attempts to reconstruct the evolutionary history of Gerbillus mainly relied on the mitochondrial cyt-b marker as a source of phylogenetic information. In this study, we utilize RAD-seq genomic data from 37 specimens representing 11 species to reconstruct the phylogenetic tree for Gerbillus, applying concatenation and coalescence methods. We identified four highly supported clades corresponding to the traditionally recognized subgenera: Dipodillus, Gerbillus, Hendecapleura and Monodia. Only two uncertain branches were detected in the resulting trees, with one leading to diversification of the main lineages in the genus, recognized by quartet sampling analysis as uncertain due to possible introgression. We also examined species boundaries for four pairs of sister taxa, including potentially new species from Morocco, using SNAPP. The results strongly supported a speciation model in which all taxa are treated as separate species. The dating analyses confirmed the Plio-Pleistocene diversification of the genus, with the uncertain branch coinciding with the beginning of aridification of the Sahara at the the Plio-Pleistocene boundary. This study aligns well with the earlier analyses based on the cyt-b marker, reaffirming its suitability as an adequate marker for estimating genetic diversity in Gerbillus.

Published
2023

13. The database of the Predicts (Projecting responses of ecological diversity in changing terrestrial systems) project

Author

Hudson, LN, Newbold, T, Contu, S, Hill, SLL, Lysenko, I, De Palma, A, Phillips, HRP, Alhusseini, TI, Bedford, FE, Bennett, DJ, Booth, H, Burton, VJ, Chng, CWT, Choimes, A, Correia, DLP, Day, J, Echeverría-Londoño, S, Emerson, SR, Gao, D, Garon, M, Harrison, MLK, Ingram, DJ, Jung, M, Kemp, V, Kirkpatrick, L, Martin, CD, Pan, Y, Pask-Hale, GD, Pynegar, EL, Robinson, AN, Sanchez-Ortiz, K, Senior, RA, Simmons, BI, White, HJ, Zhang, H, Aben, J, Abrahamczyk, S, Adum, GB, Aguilar-Barquero, V, Aizen, MA, Albertos, B, Alcala, EL, del Mar Alguacil, M, Alignier, A, Ancrenaz, M, Andersen, AN, Arbeláez-Cortés, E, Armbrecht, I, Arroyo-Rodríguez, V, Aumann, T, Axmacher, JC, Azhar, B, Azpiroz, AB, Baeten, L, Bakayoko, A, Báldi, A, Banks, JE, Baral, SK, Barlow, J, Barratt, BIP, Barrico, L, Bartolommei, P, Barton, DM, Basset, Y, Batáry, P, Bates, AJ, Baur, B, Bayne, EM, Beja, P, Benedick, S, Berg, Å, Bernard, H, Berry, NJ, Bhatt, D, Bicknell, JE, Bihn, JH, Blake, RJ, Bobo, KS, Bóçon, R, Boekhout, T, Böhning-Gaese, K, Bonham, KJ, Borges, PAV, Borges, SH, Boutin, C, Bouyer, J, Bragagnolo, C, Brandt, JS, Brearley, FQ, Brito, I, Bros, V, Brunet, J, Buczkowski, G, Buddle, CM, Bugter, R, Buscardo, E, Buse, J, Cabra-García, J, Cáceres, NC, Cagle, NL, Calviño-Cancela, M, Cameron, SA, Cancello, EM, Caparrós, R, Cardoso, P, Carpenter, D, Carrijo, TF, Carvalho, AL, Cassano, CR, Castro, H, Castro-Luna, AA, Rolando, CB, Cerezo, A, Chapman, KA, Chauvat, M, Christensen, M, Clarke, FM, Cleary, DFR, Colombo, G, Connop, SP, Craig, MD, Cruz-López, L, Cunningham, SA, D'Aniello, B, D'Cruze, N, da Silva, PG, Dallimer, M, Danquah, E, Darvill, B, Dauber, J, Davis, ALV, Dawson, J, de Sassi, C, de Thoisy, B, Deheuvels, O, Dejean, A, Devineau, J-L, Diekötter, T, Dolia, JV, Domínguez, E, Dominguez-Haydar, Y, Dorn, S, Draper, I, Dreber, N, Dumont, B, Dures, SG, Dynesius, M, Edenius, L, Eggleton, P, Eigenbrod, F, Elek, Z, Entling, MH, Esler, KJ, de Lima, RF, Faruk, A, Farwig, N, Fayle, TM, Felicioli, A, Felton, AM, Fensham, RJ, Fernandez, IC, Ferreira, CC, Ficetola, GF, Fiera, C, Filgueiras, BKC, Fırıncıoğlu, HK, Flaspohler, D, Floren, A, Fonte, SJ, Fournier, A, Fowler, RE, Franzén, M, Fraser, LH, Fredriksson, GM, Freire, GB, Frizzo, TLM, Fukuda, D, Furlani, D, Gaigher, R, Ganzhorn, JU, García, KP, Garcia-R, JC, Garden, JG, Garilleti, R, Ge, B-M, Gendreau-Berthiaume, B, Gerard, PJ, Gheler-Costa, C, Gilbert, B, Giordani, P, Giordano, S, Golodets, C, Gomes, LGL, Gould, RK, Goulson, D, Gove, AD, Granjon, L, Grass, I, Gray, CL, Grogan, J, Gu, W, Guardiola, M, Gunawardene, NR, Gutierrez, AG, Gutiérrez-Lamus, DL, Haarmeyer, DH, Hanley, ME, Hanson, T, Hashim, NR, Hassan, SN, Hatfield, RG, Hawes, JE, Hayward, MW, Hébert, C, Helden, AJ, Henden, J-A, Henschel, P, Hernández, L, Herrera, JP, Herrmann, F, Herzog, F, Higuera-Diaz, D, Hilje, B, Höfer, H, Hoffmann, A, Horgan, FG, Hornung, E, Horváth, R, Hylander, K, Isaacs-Cubides, P, Ishida, H, Ishitani, M, Jacobs, CT, Jaramillo, VJ, Jauker, B, Hernández, FJ, Johnson, MF, Jolli, V, Jonsell, M, Juliani, SN, Jung, TS, Kapoor, V, Kappes, H, Kati, V, Katovai, E, Kellner, K, Kessler, M, Kirby, KR, Kittle, AM, Knight, ME, Knop, E, Kohler, F, Koivula, M, Kolb, A, Kone, M, Kőrösi, Á, Krauss, J, Kumar, A, Kumar, R, Kurz, DJ, Kutt, AS, Lachat, T, Lantschner, V, Lara, F, Lasky, JR, Latta, SC, Laurance, WF, Lavelle, P, Le Féon, V, LeBuhn, G, Légaré, J-P, Lehouck, V, Lencinas, MV, Lentini, PE, Letcher, SG, Li, Q, Litchwark, SA, Littlewood, NA, Liu, Y, Lo-Man-Hung, N, López-Quintero, CA, Louhaichi, M, Lövei, GL, Lucas-Borja, ME, Luja, VH, Luskin, MS, MacSwiney G, MC, Maeto, K, Magura, T, Mallari, NA, Malone, LA, Malonza, PK, Malumbres-Olarte, J, Mandujano, S, Måren, IE, Marin-Spiotta, E, Marsh, CJ, Marshall, EJP, Martínez, E, Martínez Pastur, G, Moreno Mateos, D, Mayfield, MM, Mazimpaka, V, McCarthy, JL, McCarthy, KP, McFrederick, QS, McNamara, S, Medina, NG, Medina, R, Mena, JL, Mico, E, Mikusinski, G, Milder, JC, Miller, JR, Miranda-Esquivel, DR, Moir, ML, Morales, CL, Muchane, MN, Muchane, M, Mudri-Stojnic, S, Munira, AN, Muoñz-Alonso, A, Munyekenye, BF, Naidoo, R, Naithani, A, Nakagawa, M, Nakamura, A, Nakashima, Y, Naoe, S, Nates-Parra, G, Navarrete Gutierrez, DA, Navarro-Iriarte, L, Ndang'ang'a, PK, Neuschulz, EL, Ngai, JT, Nicolas, V, Nilsson, SG, Noreika, N, Norfolk, O, Noriega, JA, Norton, DA, Nöske, NM, Nowakowski, AJ, Numa, C, O'Dea, N, O'Farrell, PJ, Oduro, W, Oertli, S, Ofori-Boateng, C, Oke, CO, Oostra, V, Osgathorpe, LM, Otavo, SE, Page, NV, Paritsis, J, Parra-H, A, Parry, L, Pe'er, G, Pearman, PB, Pelegrin, N, Pélissier, R, Peres, CA, Peri, PL, Persson, AS, Petanidou, T, Peters, MK, Pethiyagoda, RS, Phalan, B, Philips, TK, Pillsbury, FC, Pincheira-Ulbrich, J, Pineda, E, Pino, J, Pizarro-Araya, J, Plumptre, AJ, Poggio, SL, Politi, N, Pons, P, Poveda, K, Power, EF, Presley, SJ, Proença, V, Quaranta, M, Quintero, C, Rader, R, Ramesh, BR, Ramirez-Pinilla, MP, Ranganathan, J, Rasmussen, C, Redpath-Downing, NA, Reid, JL, Reis, YT, Rey Benayas, JM, Rey-Velasco, JC, Reynolds, C, Ribeiro, DB, Richards, MH, Richardson, BA, Richardson, MJ, Ríos, RM, Robinson, R, Robles, CA, Römbke, J, Romero-Duque, LP, Rös, M, Rosselli, L, Rossiter, SJ, Roth, DS, Roulston, TH, Rousseau, L, Rubio, AV, Ruel, J-C, Sadler, JP, Sáfián, S, Saldaña-Vázquez, RA, Sam, K, Samnegård, U, Santana, J, Santos, X, Savage, J, Schellhorn, NA, Schilthuizen, M, Schmiedel, U, Schmitt, CB, Schon, NL, Schüepp, C, Schumann, K, Schweiger, O, Scott, DM, Scott, KA, Sedlock, JL, Seefeldt, SS, Shahabuddin, G, Shannon, G, Sheil, D, Sheldon, FH, Shochat, E, Siebert, SJ, Silva, FAB, Simonetti, JA, Slade, EM, Smith, J, Smith-Pardo, AH, Sodhi, NS, Somarriba, EJ, Sosa, RA, Soto Quiroga, G, St-Laurent, M-H, Starzomski, BM, Stefanescu, C, Steffan-Dewenter, I, Stouffer, PC, Stout, JC, Strauch, AM, Struebig, MJ, Su, Z, Suarez-Rubio, M, Sugiura, S, Summerville, KS, Sung, Y-H, Sutrisno, H, Svenning, J-C, Teder, T, Threlfall, CG, Tiitsaar, A, Todd, JH, Tonietto, RK, Torre, I, Tóthmérész, B, Tscharntke, T, Turner, EC, Tylianakis, JM, Uehara-Prado, M, Urbina-Cardona, N, Vallan, D, Vanbergen, AJ, Vasconcelos, HL, Vassilev, K, Verboven, HAF, Verdasca, MJ, Verdú, JR, Vergara, CH, Vergara, PM, Verhulst, J, Virgilio, M, Vu, LV, Waite, EM, Walker, TR, Wang, H-F, Wang, Y, Watling, JI, Weller, B, Wells, K, Westphal, C, Wiafe, ED, Williams, CD, Willig, MR, Woinarski, JCZ, Wolf, JHD, Wolters, V, Woodcock, BA, Wu, J, Wunderle, JM, Yamaura, Y, Yoshikura, S, Yu, DW, Zaitsev, AS, Zeidler, J, Zou, F, Collen, B, Ewers, RM, Mace, GM, Purves, DW, Scharlemann, JPW, Purvis, A, The Natural History Museum [London] (NHM), United Nations Environment Programme World Conservation Monitoring Centre, Department of Genetics, Evolution and Environment, Centre for Biodiversity and Environment, Research, University College of London [London] (UCL), Department of Life Sciences [Trieste], Università degli studi di Trieste, Imperial College London, Department of Zoology, Auburn University (AU), Frankfurt Zoological Society, Science and Solutions for a Changing Planet DTP and the Department of Life Sciences, Centre d’étude de la forêt, Université Laval, School of Life Sciences, University of Sussex, School of Biological Sciences [London], Queen Mary University of London (QMUL), School of Biological and Ecological Sciences, University of Stirling, School of Biological Sciences [Egham), Royal Holloway [University of London] (RHUL), School of Environment, Natural Resources and Geography, Bangor University, University College London (UCL), School of Biological Sciences [Clayton], Monash University [Clayton], Institute of Biological and Environmental Sciences, (SFIRC), Evolutionary Ecology Group, University of Antwerp (UA), Nees Institute for Plant Biodiversity, Rheinische Friedrich-Wilhelms-Universität Bonn, Wildlife and Range Management Department, Faculty of Renewable Natural Resources, College of Agriculture and Natural Resources (CANR), Kwame Nkrumah University of Science and Technology (KNUST), Save the frogs!, Escuela de Biología, Universidad Nacional de Costa Rica, Instituto Nacional de Investigaciones en Biodiversidad y Medioambiente [Bariloche] (INIBIOMA-CONICET), Consejo Nacional de Investigaciones Científicas y Técnicas [Buenos Aires] (CONICET)-Universidad Nacional del Comahue [Neuquén] (UNCOMA), Departamento de Botánica, Facultad de Farmacia, Universidad de Valencia, Marine Laboratory, Silliman University-Angelo King Center for Research and Environmental Management, Silliman University, Department of Soil and Water Conservation, Centro de Edafologia y Biologia Aplicada del Segura, SAD Paysage (SAD Paysage), Institut National de la Recherche Agronomique (INRA)-AGROCAMPUS OUEST, Dynamiques Forestières dans l'Espace Rural (DYNAFOR), Institut National de la Recherche Agronomique (INRA)-Ecole Nationale Supérieure Agronomique de Toulouse-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées, Animal, Santé, Territoires, Risques et Ecosystèmes (UMR ASTRE), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA), Unité Mixte de Recherches sur les Herbivores - UMR 1213 (UMRH), VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Institut National de la Recherche Agronomique (INRA), Centre de Biologie pour la Gestion des Populations (UMR CBGP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Université de Montpellier (UM)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Abeilles et Environnement (AE), Institut National de la Recherche Agronomique (INRA)-Avignon Université (AU), Patrimoines locaux, Environnement et Globalisation (PALOC), Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU), Università degli studi di Trieste = University of Trieste, Université Laval [Québec] (ULaval), Institut National de la Recherche Agronomique (INRA)-École nationale supérieure agronomique de Toulouse (ENSAT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT), Unité Mixte de Recherche sur les Herbivores - UMR 1213 (UMRH), Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS), The Royal Society, Natural Environment Research Council (NERC), Kwame Nkrumah University of Science and Technology [GHANA] (KNUST), AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de la Recherche Agronomique (INRA), Institut National de la Recherche Agronomique (INRA)-École nationale supérieure agronomique de Toulouse [ENSAT]-Institut National Polytechnique (Toulouse) (Toulouse INP), VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Institut National de la Recherche Agronomique (INRA)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, Westerdijk Fungal Biodiversity Institute, Westerdijk Fungal Biodiversity Institute - Yeast Research, Hudson, Lawrence N [0000-0003-4072-7469], Choimes, Argyrios [0000-0002-9849-1500], Jung, Martin [0000-0002-7569-1390], Apollo - University of Cambridge Repository, Hudson, Lawrence N, Newbold, Tim, Contu, Sara, Hill, Samantha L. L., Lysenko, Igor, De Palma, Adriana, Phillips, Helen R. P., Alhusseini, Tamera I., Bedford, Felicity E., Bennett, Dominic J., Booth, Hollie, Burton, Victoria J., Chng, Charlotte W. T., Choimes, Argyrio, Correia, David L. P., Day, Julie, Echeverría Londoño, Susy, Emerson, Susan R., Gao, Di, Garon, Morgan, Harrison, Michelle L. K., Ingram, Daniel J., Jung, Martin, Kemp, Victoria, Kirkpatrick, Lucinda, Martin, Callum D., Pan, Yuan, Pask Hale, Gwilym D., Pynegar, Edwin L., Robinson, Alexandra N., Sanchez Ortiz, Katia, Senior, Rebecca A., Simmons, Benno I., White, Hannah J., Zhang, Hanbin, Aben, Job, Abrahamczyk, Stefan, Adum, Gilbert B., Aguilar Barquero, Virginia, Aizen, Marcelo A., Albertos, Belén, Alcala, E. L., del Mar Alguacil, Maria, Alignier, Audrey, Ancrenaz, Marc, Andersen, Alan N., Arbeláez Cortés, Enrique, Armbrecht, Inge, Arroyo Rodríguez, Víctor, Aumann, Tom, Axmacher, Jan C., Azhar, Badrul, Azpiroz, Adrián B., Baeten, Lander, Bakayoko, Adama, Báldi, Andrá, Banks, John E., Baral, Sharad K., Barlow, Jo, Barratt, Barbara I. P., Barrico, Lurde, Bartolommei, Paola, Barton, Diane M., Basset, Yve, Batáry, Péter, Bates, Adam J., Baur, Bruno, Bayne, Erin M., Beja, Pedro, Benedick, Suzan, Berg, Åke, Bernard, Henry, Berry, Nicholas J., Bhatt, Dinesh, Bicknell, Jake E., Bihn, Jochen H., Blake, Robin J., Bobo, Kadiri S., Bóçon, Roberto, Boekhout, Teun, Böhning Gaese, Katrin, Bonham, Kevin J., Borges, Paulo A. V., Borges, Sérgio H., Boutin, Céline, Bouyer, Jérémy, Bragagnolo, Cibele, Brandt, Jodi S., Brearley, Francis Q., Brito, Isabel, Bros, Vicenç, Brunet, Jörg, Buczkowski, Grzegorz, Buddle, Christopher M., Bugter, Rob, Buscardo, Erika, Buse, Jörn, Cabra García, Jimmy, Cáceres, Nilton C., Cagle, Nicolette L., Calviño Cancela, María, Cameron, Sydney A., Cancello, Eliana M., Caparrós, Rut, Cardoso, Pedro, Carpenter, Dan, Carrijo, Tiago F., Carvalho, Anelena L., Cassano, Camila R., Castro, Helena, Castro Luna, Alejandro A., Rolando, Cerda B., Cerezo, Alexi, Chapman, Kim Alan, Chauvat, Matthieu, Christensen, Morten, Clarke, Francis M., Cleary, Daniel F. R., Colombo, Giorgio, Connop, Stuart P., Craig, Michael D., Cruz López, Leopoldo, Cunningham, Saul A., D'Aniello, Biagio, D'Cruze, Neil, da Silva, Pedro Giovâni, Dallimer, Martin, Danquah, Emmanuel, Darvill, Ben, Dauber, Jen, Davis, Adrian L. V., Dawson, Jeff, de Sassi, Claudio, de Thoisy, Benoit, Deheuvels, Olivier, Dejean, Alain, Devineau, Jean Loui, Diekötter, Tim, Dolia, Jignasu V., Domínguez, Erwin, Dominguez Haydar, Yamileth, Dorn, Silvia, Draper, Isabel, Dreber, Niel, Dumont, Bertrand, Dures, Simon G., Dynesius, Mat, Edenius, Lar, Eggleton, Paul, Eigenbrod, Felix, Elek, Zoltán, Entling, Martin H., Esler, Karen J., de Lima, Ricardo F., Faruk, Aisyah, Farwig, Nina, Fayle, Tom M., Felicioli, Antonio, Felton, Annika M., Fensham, Roderick J., Fernandez, Ignacio C., Ferreira, Catarina C., Ficetola, Gentile F., Fiera, Cristina, Filgueiras, Bruno K. C., Fırıncıoğlu, Hüseyin K., Flaspohler, David, Floren, Andrea, Fonte, Steven J., Fournier, Anne, Fowler, Robert E., Franzén, Marku, Fraser, Lauchlan H., Fredriksson, Gabriella M., Freire, Geraldo B., Frizzo, Tiago L. M., Fukuda, Daisuke, Furlani, Dario, Gaigher, René, Ganzhorn, Jörg U., García, Karla P., Garcia R, Juan C., Garden, Jenni G., Garilleti, Ricardo, Ge, Bao Ming, Gendreau Berthiaume, Benoit, Gerard, Philippa J., Gheler Costa, Carla, Gilbert, Benjamin, Giordani, Paolo, Giordano, Simonetta, Golodets, Carly, Gomes, Laurens G. L., Gould, Rachelle K., Goulson, Dave, Gove, Aaron D., Granjon, Laurent, Grass, Ingo, Gray, Claudia L., Grogan, Jame, Gu, Weibin, Guardiola, Moisè, Gunawardene, Nihara R., Gutierrez, Alvaro G., Gutiérrez Lamus, Doris L., Haarmeyer, Daniela H., Hanley, Mick E., Hanson, Thor, Hashim, Nor R., Hassan, Shombe N., Hatfield, Richard G., Hawes, Joseph E., Hayward, Matt W., Hébert, Christian, Helden, Alvin J., Henden, John André, Henschel, Philipp, Hernández, Lionel, Herrera, James P., Herrmann, Farina, Herzog, Felix, Higuera Diaz, Diego, Hilje, Branko, Höfer, Hubert, Hoffmann, Anke, Horgan, Finbarr G., Hornung, Elisabeth, Horváth, Roland, Hylander, Kristoffer, Isaacs Cubides, Paola, Ishida, Hiroaki, Ishitani, Masahiro, Jacobs, Carmen T., Jaramillo, Víctor J., Jauker, Birgit, Hernández, F. Jiménez, Johnson, McKenzie F., Jolli, Virat, Jonsell, Mat, Juliani, S. Nur, Jung, Thomas S., Kapoor, Vena, Kappes, Heike, Kati, Vassiliki, Katovai, Eric, Kellner, Klau, Kessler, Michael, Kirby, Kathryn R., Kittle, Andrew M., Knight, Mairi E., Knop, Eva, Kohler, Florian, Koivula, Matti, Kolb, Annette, Kone, Mouhamadou, Kőrösi, Ádám, Krauss, Jochen, Kumar, Ajith, Kumar, Raman, Kurz, David J., Kutt, Alex S., Lachat, Thibault, Lantschner, Victoria, Lara, Francisco, Lasky, Jesse R., Latta, Steven C., Laurance, William F., Lavelle, Patrick, Le Féon, Violette, Lebuhn, Gretchen, Légaré, Jean Philippe, Lehouck, Valérie, Lencinas, María V., Lentini, Pia E., Letcher, Susan G., Li, Qi, Litchwark, Simon A., Littlewood, Nick A., Liu, Yunhui, Lo Man Hung, Nancy, López Quintero, Carlos A., Louhaichi, Mounir, Lövei, Gabor L., Lucas Borja, Manuel Esteban, Luja, Victor H., Luskin, Matthew S., MacSwiney G, M. Cristina, Maeto, Kaoru, Magura, Tibor, Mallari, Neil Aldrin, Malone, Louise A., Malonza, Patrick K., Malumbres Olarte, Jagoba, Mandujano, Salvador, Måren, Inger E., Marin Spiotta, Erika, Marsh, Charles J., Marshall, E. J. P., Martínez, Eliana, Martínez Pastur, Guillermo, Moreno Mateos, David, Mayfield, Margaret M., Mazimpaka, Vicente, Mccarthy, Jennifer L., Mccarthy, Kyle P., Mcfrederick, Quinn S., Mcnamara, Sean, Medina, Nagore G., Medina, Rafael, Mena, Jose L., Mico, Estefania, Mikusinski, Grzegorz, Milder, Jeffrey C., Miller, James R., Miranda Esquivel, Daniel R., Moir, Melinda L., Morales, Carolina L., Muchane, Mary N., Muchane, Muchai, Mudri Stojnic, Sonja, Munira, A. Nur, Muoñz Alonso, Antonio, Munyekenye, B. F., Naidoo, Robin, Naithani, A., Nakagawa, Michiko, Nakamura, Akihiro, Nakashima, Yoshihiro, Naoe, Shoji, Nates Parra, Guiomar, Navarrete Gutierrez, Dario A., Navarro Iriarte, Lui, Ndang'Ang'A, Paul K., Neuschulz, Eike L., Ngai, Jacqueline T., Nicolas, Violaine, Nilsson, Sven G., Noreika, Norberta, Norfolk, Olivia, Noriega, Jorge Ari, Norton, David A., Nöske, Nicole M., Nowakowski, A. Justin, Numa, Catherine, O'Dea, Niall, O'Farrell, Patrick J., Oduro, William, Oertli, Sabine, Ofori Boateng, Caleb, Oke, Christopher Omamoke, Oostra, Vicencio, Osgathorpe, Lynne M., Otavo, Samuel Eduardo, Page, Navendu V., Paritsis, Juan, Parra H, Alejandro, Parry, Luke, Pe'Er, Guy, Pearman, Peter B., Pelegrin, Nicolá, Pélissier, Raphaël, Peres, Carlos A., Peri, Pablo L., Persson, Anna S., Petanidou, Theodora, Peters, Marcell K., Pethiyagoda, Rohan S., Phalan, Ben, Philips, T. Keith, Pillsbury, Finn C., Pincheira Ulbrich, Jimmy, Pineda, Eduardo, Pino, Joan, Pizarro Araya, Jaime, Plumptre, A. J., Poggio, Santiago L., Politi, Natalia, Pons, Pere, Poveda, Katja, Power, Eileen F., Presley, Steven J., Proença, Vânia, Quaranta, Marino, Quintero, Carolina, Rader, Romina, Ramesh, B. R., Ramirez Pinilla, Martha P., Ranganathan, Jai, Rasmussen, Clau, Redpath Downing, Nicola A., Reid, J. Leighton, Reis, Yana T., Rey Benayas, José M., Rey Velasco, Juan Carlo, Reynolds, Chevonne, Ribeiro, Danilo Bandini, Richards, Miriam H., Richardson, Barbara A., Richardson, Michael J., Ríos, Rodrigo Macip, Robinson, Richard, Robles, Carolina A., Römbke, Jörg, Romero Duque, Luz Piedad, Rös, Matthia, Rosselli, Loreta, Rossiter, Stephen J., Roth, Dana S., Roulston, T'ai H., Rousseau, Laurent, Rubio, André V., Ruel, Jean Claude, Sadler, Jonathan P., Sáfián, Szabolc, Saldaña Vázquez, Romeo A., Sam, Katerina, Samnegård, Ulrika, Santana, Joana, Santos, Xavier, Savage, Jade, Schellhorn, Nancy A., Schilthuizen, Menno, Schmiedel, Ute, Schmitt, Christine B., Schon, Nicole L., Schüepp, Christof, Schumann, Katharina, Schweiger, Oliver, Scott, Dawn M., Scott, Kenneth A., Sedlock, Jodi L., Seefeldt, Steven S., Shahabuddin, Ghazala, Shannon, Graeme, Sheil, Dougla, Sheldon, Frederick H., Shochat, Eyal, Siebert, Stefan J., Silva, Fernando A. B., Simonetti, Javier A., Slade, Eleanor M., Smith, Jo, Smith Pardo, Allan H., Sodhi, Navjot S., Somarriba, Eduardo J., Sosa, Ramón A., Soto Quiroga, Grimaldo, St Laurent, Martin Hugue, Starzomski, Brian M., Stefanescu, Constanti, Steffan Dewenter, Ingolf, Stouffer, Philip C., Stout, Jane C., Strauch, Ayron M., Struebig, Matthew J., Su, Zhimin, Suarez Rubio, Marcela, Sugiura, Shinji, Summerville, Keith S., Sung, Yik Hei, Sutrisno, Hari, Svenning, Jens Christian, Teder, Tiit, Threlfall, Caragh G., Tiitsaar, Anu, Todd, Jacqui H., Tonietto, Rebecca K., Torre, Ignasi, Tóthmérész, Béla, Tscharntke, Teja, Turner, Edgar C., Tylianakis, Jason M., Uehara Prado, Marcio, Urbina Cardona, Nicola, Vallan, Deni, Vanbergen, Adam J., Vasconcelos, Heraldo L., Vassilev, Kiril, Verboven, Hans A. F., Verdasca, Maria João, Verdú, José R., Vergara, Carlos H., Vergara, Pablo M., Verhulst, Jort, Virgilio, Massimiliano, Vu, Lien Van, Waite, Edward M., Walker, Tony R., Wang, Hua Feng, Wang, Yanping, Watling, James I., Weller, Britta, Wells, Konstan, Westphal, Catrin, Wiafe, Edward D., Williams, Christopher D., Willig, Michael R., Woinarski, John C. Z., Wolf, Jan H. D., Wolters, Volkmar, Woodcock, Ben A., Wu, Jihua, Wunderle, Joseph M., Yamaura, Yuichi, Yoshikura, Satoko, Yu, Douglas W., Zaitsev, Andrey S., Zeidler, Juliane, Zou, Fasheng, Collen, Ben, Ewers, Rob M., Mace, Georgina M., Purves, Drew W., Scharlemann, Jörn P. W., Purvis, Andy, Centre National de la Recherche Scientifique - CNRS (FRANCE), Institut National Polytechnique de Toulouse - INPT (FRANCE), Institut National de la Recherche Agronomique - INRA (FRANCE), Université Toulouse III - Paul Sabatier - UT3 (FRANCE), Institut National Polytechnique de Toulouse - Toulouse INP (FRANCE), Natural History Museum, 3Department of Genetics, Evolution and Environment, Centre for Biodiversity and Environment, Research, University College London ( UCL ), Department of Life Sciences, Universita di Trieste, Auburn University, Queen Mary University of London ( QMUL ), Royal Holloway [University of London] ( RHUL ), ( SFIRC ), University of Antwerp ( UA ), University of Bonn (Rheinische Friedrich-Wilhelms), Kwame Nkrumah University of Science and Technology ( KNUST ), Universidad de Costa Rica, Laboratorio Ecotono-CRUB, Universidad Nacional del Comahue, SAD Paysage ( SAD Paysage ), Institut National de la Recherche Agronomique ( INRA ) -AGROCAMPUS OUEST, Dynamiques Forestières dans l'Espace Rural ( DYNAFOR ), Institut National Polytechnique [Toulouse] ( INP ) -Institut National de la Recherche Agronomique ( INRA ) -Ecole Nationale Supérieure Agronomique de Toulouse, Contrôle des maladies animales exotiques et émergentes [Montpellier] ( CMAEE ), Institut National de la Recherche Agronomique ( INRA ) -Centre de coopération internationale en recherche agronomique pour le développement [CIRAD] : UMR15, Unité Mixte de Recherches sur les Herbivores ( UMR 1213 Herbivores ), VetAgro Sup ( VAS ) -AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Institut National de la Recherche Agronomique ( INRA ), Centre de Biologie pour la Gestion des Populations ( CBGP ), Centre de Coopération Internationale en Recherche Agronomique pour le Développement ( CIRAD ) -Centre international d'études supérieures en sciences agronomiques ( Montpellier SupAgro ) -Institut national de la recherche agronomique [Montpellier] ( INRA Montpellier ) -Université de Montpellier ( UM ) -Institut de Recherche pour le Développement ( IRD [France-Sud] ) -Institut national d’études supérieures agronomiques de Montpellier ( Montpellier SupAgro ), Abeilles et Environnement ( AE ), and Institut National de la Recherche Agronomique ( INRA ) -Université d'Avignon et des Pays de Vaucluse ( UAPV )

Subjects
VDP::Mathematics and natural science: 400::Zoology and botany: 480::Ecology: 488, Biodiversité et Ecologie, data sharing, habitat, Biológiai tudományok, Q1, BIRD SPECIES RICHNESS, TROPICAL DRY FOREST, VDP::Matematikk og Naturvitenskap: 400::Zoologiske og botaniske fag: 480::Økologi: 488, MEXICAN COFFEE PLANTATIONS, Természettudományok, Data and Information, Milieux et Changements globaux, LOWLAND, ComputingMilieux_MISCELLANEOUS, Original Research, Ecology, global biodiversity modeling, global change, habitat destruction, land use, Ecology, Evolution, Behavior and Systematics, Nature and Landscape Conservation, LAND-USE CHANGE, [ SDE.MCG ] Environmental Sciences/Global Changes, Chemistry, Earth and Related Environmental Sciences, Evolution, [SDE.MCG]Environmental Sciences/Global Changes, INTENSIVELY MANAGED FARMLAND, Ingénierie de l'environnement, CARABID BEETLE ASSEMBLAGES, FRUIT-FEEDING BUTTERFLIES, Ecology and Environment, Biodiversity and Ecology, keywords: data sharing, Behavior and Systematics, Biology, Ekologi, [ SDE.BE ] Environmental Sciences/Biodiversity and Ecology, QL, DIPTEROCARP FOREST, QH, PLANT COMMUNITY COMPOSITION, Geovetenskap och miljövetenskap, Biology and Life Sciences, destruction, Ecology, Evolution, Behavior and Systematic, URBAN-RURAL GRADIENT, Earth and Environmental Sciences, Environnement et Société, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Abstract

Source at https://doi.org/10.1002/ece3.2579. The PREDICTS project—Projecting Responses of Ecological Diversity In Changing Terrestrial Systems (www.predicts.org.uk)—has collated from published studies a large, reasonably representative database of comparable samples of biodiversity from multiple sites that differ in the nature or intensity of human impacts relating to land use. We have used this evidence base to develop global and regional statistical models of how local biodiversity responds to these measures. We describe and make freely available this 2016 release of the database, containing more than 3.2 million records sampled at over 26,000 locations and representing over 47,000 species. We outline how the database can help in answering a range of questions in ecology and conservation biology. To our knowledge, this is the largest and most geographically and taxonomically representative database of spatial comparisons of biodiversity that has been collated to date; it will be useful to researchers and international efforts wishing to model and understand the global status of biodiversity.

Published
2017
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15. The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project

Author

Hudson, L., Newbold, T., Contu, S., Hill, S., Lysenko, I., De Palma, A., Phillips, H., Alhusseini, T., Bedford, F., Bennett, D., Booth, H., Burton, V., Chng, C., Choimes, A., Correia, D., Day, J., Echeverria-Londono, S., Emerson, S., Gao, D., Garon, M., Harrison, M., Ingram, D., Jung, M., Kemp, V., Kirkpatrick, L., Martin, C., Pan, Y., Pask-Hale, G., Pynegar, E., Robinson, A., Sanchez-Ortiz, K., Senior, R., Simmons, B., White, H., Zhang, H., Aben, J., Abrahamczyk, S., Adum, G., Aguilar-Barquero, V., Aizen, M., Albertos, B., Alcala, E., del Mar Alguacil, M., Alignier, A., Ancrenaz, M., Andersen, A., Arbelaez-Cortes, E., Armbrecht, I., Arroyo-Rodriguez, V., Aumann, T., Axmacher, J., Azhar, B., Azpiroz, A., Baeten, L., Bakayoko, A., Baldi, A., Banks, J., Baral, S., Barlow, J., Barratt, B., Barrico, L., Bartolommei, P., Barton, D., Basset, Y., Batary, P., Bates, A., Baur, B., Bayne, E., Beja, P., Benedick, S., Berg, A., Bernard, H., Berry, N., Bhatt, D., Bicknell, J., Bihn, J., Blake, R., Bobo, K., Bocon, R., Boekhout, T., Bohning-Gaese, K., Bonham, K., Borges, P., Borges, S., Boutin, C., Bouyer, J., Bragagnolo, C., Brandt, J., Brearley, F., Brito, I., Bros, V., Brunet, J., Buczkowski, G., Buddle, C., Bugter, R., Buscardo, E., Buse, J., Cabra-Garcia, J., Caceres, N., Cagle, N., Calvino-Cancela, M., Cameron, S., Cancello, E., Caparros, R., Cardoso, P., Carpenter, D., Carrijo, T., Carvalho, A., Cassano, C., Castro, H., Castro-Luna, A., Cerda, R., Cerezo, A., Chapman, K., Chauvat, M., Christensen, M., Clarke, F., Cleary, D., Colombo, G., Connop, S., Craig, M., Cruz-Lopez, L., Cunningham, S., D'Aniello, B., D'Cruze, N., da Silva, P., Dallimer, M., Danquah, E., Darvill, B., Dauber, J., Davis, A., Dawson, J., de Sassi, C., de Thoisy, B., Deheuvels, O., Dejean, A., Devineau, J., Diekoetter, T., Dolia, J., Dominguez, E., Dominguez-Haydar, Y., Dorn, S., Draper, I., Dreber, N., Dumont, B., Dures, S., Dynesius, M., Edenius, L., Eggleton, P., Eigenbrod, F., Elek, Z., Entling, M., Esler, K., De Lima, R., Faruk, A., Farwig, N., Fayle, T., Felicioli, A., Felton, A., Fensham, R., Fernandez, I., Ferreira, C., Ficetola, G., Fiera, C., Filgueiras, B., Firincioglu, H., Flaspohler, D., Floren, A., Fonte, S., Fournier, A., Fowler, R., Franzen, M., Fraser, L., Fredriksson, G., Freire-, G., Frizzo, T., Fukuda, D., Furlani, D., Gaigher, R., Ganzhorn, J., Garcia, K., Garcia-R, J., Garden, J., Garilleti, R., Ge, B., Gendreau-Berthiaume, B., Gerard, P., Gheler-Costa, C., Gilbert, B., Giordani, P., Giordano, S., Golodets, C., Gomes, L., Gould, R., Goulson, D., Gove, Aaron, Granjon, L., Grass, I., Gray, C., Grogan, J., Gu, W., Guardiola, M., Gunawardene, Nihara, Gutierrez, A., Gutierrez-Lamus, D., Haarmeyer, D., Hanley, M., Hanson, T., Hashim, N., Hassan, S., Hatfield, R., Hawes, J., Hayward, M., Hebert, C., Helden, A., Henden, J., Henschel, P., Hernandez, L., Herrera, J., Herrmann, F., Herzog, F., Higuera-Diaz, D., Hilje, B., Hofer, H., Hoffmann, A., Horgan, F., Hornung, E., Horvath, R., Hylander, K., Isaacs-Cubides, P., Ishida, H., Ishitani, M., Jacobs, C., Jaramillo, V., Jauker, B., Jimenez Hernandez, F., Johnson, M., Jolli, V., Jonsell, M., Juliani, S., Jung, T., Kapoor, V., Kappes, H., Kati, V., Katovai, E., Kellner, K., Kessler, M., Kirby, K., Kittle, A., Knight, M., Knop, E., Kohler, F., Koivula, M., Kolb, A., Kone, M., Koroesi, A., Krauss, J., Kumar, A., Kumar, R., Kurz, D., Kutt, A., Lachat, T., Lantschner, V., Lara, F., Lasky, J., Latta, S., Laurance, W., Lavelle, P., Le Feon, V., LeBuhn, G., Legare, J., Lehouck, V., Lencinas, M., Lentini, P., Letcher, S., Li, Q., Litchwark, S., Littlewood, N., Liu, Y., Lo-Man-Hung, N., Lopez-Quintero, C., Louhaichi, M., Lovei, G., Lucas-Borja, M., Luja, V., Luskin, M., MacSwiney G, M., Maeto, K., Magura, T., Mallari, N., Malone, L., Malonza, P., Malumbres-Olarte, J., Mandujano, S., Maren, I., Marin-Spiotta, E., Marsh, C., Marshall, E., Martinez, E., Pastur, G., Mateos, D., Mayfield, M., Mazimpaka, V., McCarthy, J., McCarthy, K., McFrederick, Q., McNamara, S., Medina, N., Medina, R., Mena, J., Mico, E., Mikusinski, G., Milder, J., Miller, J., Miranda-Esquivel, D., Moir, M., Morales, C., Muchane, M., Mudri-Stojnic, S., Munira, A., Muonz-Alonso, A., Munyekenye, B., Naidoo, R., Naithani, A., Nakagawa, M., Nakamura, A., Nakashima, Y., Naoe, S., Nates-Parra, G., Gutierrez, D., Navarro-Iriarte, L., Ndang'ang'a, P., Neuschulz, E., Ngai, J., Nicolas, V., Nilsson, S., Noreika, N., Norfolk, O., Noriega, J., Norton, D., Noeske, N., Nowakowski, A., Numa, C., O'Dea, N., O'Farrell, P., Oduro, W., Oertli, S., Ofori-Boateng, C., Oke, C., Oostra, V., Osgathorpe, L., Eduardo Otavo, S., Page, N., Paritsis, J., Parra-H, A., Parry, L., Pe'er, G., Pearman, P., Pelegrin, N., Pelissier, R., Peres, C., Peri, P., Persson, A., Petanidou, T., Peters, M., Pethiyagoda, R., Phalan, B., Philips, T., Pillsbury, F., Pincheira-Ulbrich, J., Pineda, E., Pino, J., Pizarro-Araya, J., Plumptre, A., Poggio, S., Politi, N., Pons, P., 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Steffan-Dewenter, I., Stouffer, P., Stout, J., Strauch, A., Struebig, M., Su, Z., Suarez-Rubio, M., Sugiura, S., Summerville, K., Sung, Y., Sutrisno, H., Svenning, J., Teder, T., Threlfall, C., Tiitsaar, A., Todd, J., Tonietto, R., Torre, I., Tothmeresz, B., Tscharntke, T., Turner, E., Tylianakis, J., Uehara-Prado, M., Urbina-Cardona, N., Vallan, D., Vanbergen, A., Vasconcelos, H., Vassilev, K., Verboven, H., Verdasca, M., Verdu, J., Vergara, C., Vergara, P., Verhulst, J., Virgilio, M., Van Vu, L., Waite, E., Walker, T., Wang, H., Wang, Y., Watling, J., Weller, B., Wells, K., Westphal, C., Wiafe, E., Williams, C., Willig, M., Woinarski, J., Wolf, J., Wolters, V., Woodcock, B., Wu, J., Wunderle, J., Yamaura, Y., Yoshikura, S., Yu, D., Zaitsev, A., Zeidler, J., Zou, F., Collen, B., Ewers, R., Mace, G., Purves, D., Scharlemann, J., Purvis, A., Hudson, L., Newbold, T., Contu, S., Hill, S., Lysenko, I., De Palma, A., Phillips, H., Alhusseini, T., Bedford, F., Bennett, D., Booth, H., Burton, V., Chng, C., Choimes, A., Correia, D., Day, J., Echeverria-Londono, S., Emerson, S., Gao, D., Garon, M., Harrison, M., Ingram, D., Jung, M., Kemp, V., Kirkpatrick, L., Martin, C., Pan, Y., Pask-Hale, G., Pynegar, E., Robinson, A., Sanchez-Ortiz, K., Senior, R., Simmons, B., White, H., Zhang, H., Aben, J., Abrahamczyk, S., Adum, G., Aguilar-Barquero, V., Aizen, M., Albertos, B., Alcala, E., del Mar Alguacil, M., Alignier, A., Ancrenaz, M., Andersen, A., Arbelaez-Cortes, E., Armbrecht, I., Arroyo-Rodriguez, V., Aumann, T., Axmacher, J., Azhar, B., Azpiroz, A., Baeten, L., Bakayoko, A., Baldi, A., Banks, J., Baral, S., Barlow, J., Barratt, B., Barrico, L., Bartolommei, P., Barton, D., Basset, Y., Batary, P., Bates, A., Baur, B., Bayne, E., Beja, P., Benedick, S., Berg, A., Bernard, H., Berry, N., Bhatt, D., Bicknell, J., Bihn, J., Blake, R., Bobo, K., Bocon, R., Boekhout, T., Bohning-Gaese, K., Bonham, K., Borges, P., Borges, S., Boutin, C., Bouyer, J., Bragagnolo, C., Brandt, J., 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M., Jolli, V., Jonsell, M., Juliani, S., Jung, T., Kapoor, V., Kappes, H., Kati, V., Katovai, E., Kellner, K., Kessler, M., Kirby, K., Kittle, A., Knight, M., Knop, E., Kohler, F., Koivula, M., Kolb, A., Kone, M., Koroesi, A., Krauss, J., Kumar, A., Kumar, R., Kurz, D., Kutt, A., Lachat, T., Lantschner, V., Lara, F., Lasky, J., Latta, S., Laurance, W., Lavelle, P., Le Feon, V., LeBuhn, G., Legare, J., Lehouck, V., Lencinas, M., Lentini, P., Letcher, S., Li, Q., Litchwark, S., Littlewood, N., Liu, Y., Lo-Man-Hung, N., Lopez-Quintero, C., Louhaichi, M., Lovei, G., Lucas-Borja, M., Luja, V., Luskin, M., MacSwiney G, M., Maeto, K., Magura, T., Mallari, N., Malone, L., Malonza, P., Malumbres-Olarte, J., Mandujano, S., Maren, I., Marin-Spiotta, E., Marsh, C., Marshall, E., Martinez, E., Pastur, G., Mateos, D., Mayfield, M., Mazimpaka, V., McCarthy, J., McCarthy, K., McFrederick, Q., McNamara, S., Medina, N., Medina, R., Mena, J., Mico, E., Mikusinski, G., Milder, J., Miller, J., Miranda-Esquivel, D., Moir, M., Morales, C., Muchane, M., Mudri-Stojnic, S., Munira, A., Muonz-Alonso, A., Munyekenye, B., Naidoo, R., Naithani, A., Nakagawa, M., Nakamura, A., Nakashima, Y., Naoe, S., Nates-Parra, G., Gutierrez, D., Navarro-Iriarte, L., Ndang'ang'a, P., Neuschulz, E., Ngai, J., Nicolas, V., Nilsson, S., Noreika, N., Norfolk, O., Noriega, J., Norton, D., Noeske, N., Nowakowski, A., Numa, C., O'Dea, N., O'Farrell, P., Oduro, W., Oertli, S., Ofori-Boateng, C., Oke, C., Oostra, V., Osgathorpe, L., Eduardo Otavo, S., Page, N., Paritsis, J., Parra-H, A., Parry, L., Pe'er, G., Pearman, P., Pelegrin, N., Pelissier, R., Peres, C., Peri, P., Persson, A., Petanidou, T., Peters, M., Pethiyagoda, R., Phalan, B., Philips, T., Pillsbury, F., Pincheira-Ulbrich, J., Pineda, E., Pino, J., Pizarro-Araya, J., Plumptre, A., Poggio, S., Politi, N., Pons, P., Poveda, K., Power, E., Presley, S., Proenca, V., Quaranta, M., Quintero, C., Rader, R., Ramesh, B., Ramirez-Pinilla, M., Ranganathan, J., Rasmussen, C., Redpath-Downing, N., Reid, J., Reis, Y., Rey Benayas, J., Carlos Rey-Velasco, J., Reynolds, C., Ribeiro, D., Richards, M., Richardson, B., Richardson, M., Macip Rios, R., Robinson, R., Robles, C., Roembke, J., Romero-Duque, L., Ros, M., Rosselli, L., Rossiter, S., Roth, D., Roulston, T., Rousseau, L., Rubio, A., Ruel, J., Sadler, J., Safian, S., Saldana-Vazquez, R., Sam, K., Samnegard, U., Santana, J., Santos, X., Savage, J., Schellhorn, N., Schilthuizen, M., Schmiedel, U., Schmitt, C., Schon, N., Schuepp, C., Schumann, K., Schweiger, O., Scott, D., Scott, K., Sedlock, J., Seefeldt, S., Shahabuddin, G., Shannon, G., Sheil, D., Sheldon, F., Shochat, E., Siebert, S., Silva, F., Simonetti, J., Slade, E., Smith, J., Smith-Pardo, A., Sodhi, N., Somarriba, E., Sosa, R., Soto Quiroga, G., St-Laurent, M., Starzomski, B., Stefanescu, C., Steffan-Dewenter, I., Stouffer, P., Stout, J., Strauch, A., Struebig, M., Su, Z., Suarez-Rubio, M., Sugiura, S., Summerville, K., Sung, Y., Sutrisno, H., Svenning, J., Teder, T., Threlfall, C., Tiitsaar, A., Todd, J., Tonietto, R., Torre, I., Tothmeresz, B., Tscharntke, T., Turner, E., Tylianakis, J., Uehara-Prado, M., Urbina-Cardona, N., Vallan, D., Vanbergen, A., Vasconcelos, H., Vassilev, K., Verboven, H., Verdasca, M., Verdu, J., Vergara, C., Vergara, P., Verhulst, J., Virgilio, M., Van Vu, L., Waite, E., Walker, T., Wang, H., Wang, Y., Watling, J., Weller, B., Wells, K., Westphal, C., Wiafe, E., Williams, C., Willig, M., Woinarski, J., Wolf, J., Wolters, V., Woodcock, B., Wu, J., Wunderle, J., Yamaura, Y., Yoshikura, S., Yu, D., Zaitsev, A., Zeidler, J., Zou, F., Collen, B., Ewers, R., Mace, G., Purves, D., Scharlemann, J., and Purvis, A.

Abstract

The PREDICTS project—Projecting Responses of Ecological Diversity In Changing Terrestrial Systems (www.predicts.org.uk)—has collated from published studies a large, reasonably representative database of comparable samples of biodiversity from multiple sites that differ in the nature or intensity of human impacts relating to land use. We have used this evidence base to develop global and regional statistical models of how local biodiversity responds to these measures. We describe and make freely available this 2016 release of the database, containing more than 3.2 million records sampled at over 26,000 locations and representing over 47,000 species. We outline how the database can help in answering a range of questions in ecology and conservation biology. To our knowledge, this is the largest and most geographically and taxonomically representative database of spatial comparisons of biodiversity that has been collated to date; it will be useful to researchers and international efforts wishing to model and understand the global status of biodiversity.

Published
2017

17. Recent radiation in West African Taterillus (Rodentia, Gerbillinae): A concerted role of chromosome and climatic changes

Author

Dobigny, G., Aniskin, V., Granjon, L., Cornette, R., and Volobouev, V.

Subjects
Gerbils -- Genetic aspects, Gerbils -- Physiological aspects, Karyotypes -- Research, Cladistic analysis, Biological sciences
Abstract

A comparison of the seven specific karyotypes of genus Taterillus and a cladistic analysis performed using chromosomal rearrangements character states are discussed. It was hypothesized that the process underpinning cladogenesis involved highly under dominant genomic rearrangements that were fixed fully pronounced populational bottlenecks from a drastic climate and subsequent environmental changes.

Published
2005

18. The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project

Author

Hudson, L.N., Newbold, T., Contu, S., Hill, S.L.L., Lysenko, I., De Palma, A., Phillips, H.R.P., Alhusseini, T.I., Bedford, F.E., Bennett, D.J., Booth, H., Burton, V.J., Chng, C.W.T., Choimes, A., Correia, D.L.P., Day, J., Echeverría-Londoño, S., Emerson, S.R., Gao, D., Garon, M., Harrison, M.L.K., Ingram, D.J., Jung, M., Kemp, V., Kirkpatrick, L., Martin, C.D., Pan, Y., Pask-Hale, G.D., Pynegar, E.L., Robinson, A.N., Sanchez-Ortiz, K., Senior, R.A., Simmons, B.I., White, H.J., Zhang, H., Aben, J., Abrahamczyk, S., Adum, G.B., Aguilar-Barquero, V., Aizen, M.A., Albertos, B., Alcala, E.L., del Mar Alguacil, M., Alignier, A., Ancrenaz, M., Andersen, A.N., Arbeláez-Cortés, E., Armbrecht, I., Arroyo-Rodríguez, V., Aumann, T., Axmacher, J.C., Azhar, B., Azpiroz, A.B., Baeten, L., Bakayoko, A., Báldi, A., Banks, J.E., Baral, S.K., Barlow, J., Barratt, B.I.P., Barrico, L., Bartolommei, P., Barton, D.M., Basset, Y., Batáry, P., Bates, A.J., Baur, B., Bayne, E.M., Beja, P., Benedick, S., Berg, A., Bernard, H., Berry, N.J., Bhatt, D., Bicknell, J.E., Bihn, J.H., Blake, R.J., Bobo, K.S., Bóçon, R., Boekhout, T., Böhning-Gaese, K., Bonham, K.J., Borges, P.A.V., Borges, S.H., Boutin, C., Bouyer, J., Bragagnolo, C., Brandt, J.S., Brearley, F.Q., Brito, I., Bros, V., Brunet, J., Buczkowski, G., Buddle, C.M., Bugter, R., Buscardo, E., Buse, J., Cabra-García, J., Cáceres, N.C., Cagle, N.L., Calviño-Cancela, M., Cameron, S.A., Cancello, E.M., Caparrós, R., Cardoso, P., Carpenter, D., Carrijo, T.F., Carvalho, A.L., Cassano, C.R., Castro, H., Castro-Luna, A.A., Rolando, C.B., Cerezo, A., Chapman, K.A., Chauvat, M., Christensen, M., Clarke, F.M., Cleary, D.F.R., Colombo, G., Connop, S.P., Craig, M.D., Cruz-López, L., Cunningham, S.A., D'Aniello, B., D'Cruze, N., da Silva, P.G., Dallimer, M., Danquah, E.Y., Darvill, B., Dauber, J., Davis, A.L.V., Dawson, J., de Sassi, C., de Thoisy, B., Deheuvels, O., Dejean, A., Devineau, J.-L., Diekötter, T., Dolia, J.V., Domínguez, E., Dominguez-Haydar, Y., Dorn, S., Draper, I., Dreber, N., Dumont, B., Dures, S.G., Dynesius, M., Edenius, L., Eggleton, P., Eigenbrod, F., Elek, Z., Entling, M.H., Esler, K.J., de Lima, R.F., Faruk, A., Farwig, N., Fayle, T.M., Felicioli, A., Felton, A.M., Fensham, R.J., Fernandez, I.C., Ferreira, C.C., Ficetola, G.F., Fiera, C., Filgueiras, B.K.C., Fırıncıoğlu, H.K., Flaspohler, D., Floren, A., Fonte, S.J., Fournier, A., Fowler, R.E., Franzén, M., Fraser, L.H., Fredriksson, G.M., Freire, G.B., Frizzo, T.L.M., Fukuda, D., Furlani, D., Gaigher, R., Ganzhorn, J.U., García, K.P., Garcia-R, J.C., Garden, J.G., Garilleti, R., Ge, B.-M., Gendreau-Berthiaume, B., Gerard, P.J., Gheler-Costa, C., Gilbert, B., Giordani, P., Giordano, S., Golodets, C., Gomes, L.G.L., Gould, R.K., Goulson, D., Gove, A.D., Granjon, L., Grass, I., Gray, C.L., Grogan, J., Gu, W., Guardiola, M., Gunawardene, N.R., Gutierrez, A.G., Gutiérrez-Lamus, D.L., Haarmeyer, D.H., Hanley, M.E., Hanson, T., Hashim, N.R., Hassan, S.N., Hatfield, R.G., Hawes, J.E., Hayward, M.W., Hébert, C., Helden, A.J., Henden, J.-A., Henschel, P., Hernández, L., Herrera, J.P., Herrmann, F., Herzog, F., Higuera-Diaz, D., Hilje, B., Hofer, H., Hoffmann, A., Horgan, F.G., Hornung, E., Horváth, R., Hylander, K., Isaacs-Cubides, P., Ishida, H., Ishitani, M., Jacobs, C.T., Jaramillo, V.J., Jauker, B., Hernández, F.J., Johnson, M.F., Jolli, V., Jonsell, M., Juliani, S.N., Jung, T.S., Kapoor, V., Kappes, H., Kati, V., Katovai, E., Kellner, K., Kessler, M., Kirby, K.R., Kittle, A.M., Knight, M.E., Knop, E., Köhler, F., Koivula, M., Kolb, A., Kone, M., Kőrösi, Á., Krauss, J., Kumar, A., Kumar, R., Kurz, D.J., Kutt, A.S., Lachat, T., Lantschner, V., Lara, F., Lasky, J.R., Latta, S.C., Laurance, W.F., Lavelle, P., Le Féon, V., LeBuhn, G., Légaré, J.-P., Lehouck, V., Lencinas, M.V., Lentini, P.E., Letcher, S.G., Li, Q., Litchwark, S.A., Littlewood, N.A., Liu, Y., Lo-Man-Hung, N., López-Quintero, C.A., Louhaichi, M., Lövei, G.L., Lucas-Borja, M.E., Luja, V.H., Luskin, M.S., MacSwiney G, M.C., Maeto, K., Magura, T., Mallari, N.A., Malone, L.A., Malonza, P.K., Malumbres-Olarte, J., Mandujano, S., Måren, I.E., Marin-Spiotta, E., Marsh, C.J., Marshall, E.J.P., Martínez, E., Martínez Pastur, G., Moreno Mateos, D., Mayfield, M.M., Mazimpaka, V., McCarthy, J.L., McCarthy, K.P., McFrederick, Q.S., McNamara, S., Medina, N.G., Medina, R., Mena, J.L., Mico, E., Mikusinski, G., Milder, J.C., Miller, J.R., Miranda-Esquivel, D.R., Moir, M.L., Morales, C.L., Muchane, M.N., Muchane, M., Mudri-Stojnic, S., Munira, A.N., Muoñz-Alonso, A., Munyekenye, B.F., Naidoo, R., Naithani, A., Nakagawa, M., Nakamura, A., Nakashima, Y., Naoe, S., Nates-Parra, G., Navarrete Gutierrez, D.A., Navarro-Iriarte, L., Ndang'ang'a, P.K., Neuschulz, E.L., Ngai, J.T., Nicolas, V., Nilsson, S.G., Noreika, N., Norfolk, O., Noriega, J.A., Norton, D.A., Nöske, N.M., Nowakowski, A.J., Numa, C., O'Dea, N., O'Farrell, P.J., Oduro, W., Oertli, S., Ofori-Boateng, C., Oke, C.O., Oostra, V., Osgathorpe, L.M., Otavo, S.E., Page, N.V., Paritsis, J., Parra-H, A., Parry, L., Pe'er, G., Pearman, P.B., Pelegrin, N., Pélissier, R., Peres, C.A., Peri, P.L., Persson, A.S., Petanidou, T., Peters, M.K., Pethiyagoda, R.S., Phalan, B., Philips, T.K., Pillsbury, F.C., Pincheira-Ulbrich, J., Pineda, E., Pino, J., Pizarro-Araya, J., Plumptre, A. J., Poggio, S.L., Politi, N., Pons, P., Poveda, K., Power, E.F., Presley, S.J., Proença, V., Quaranta, M., Quintero, C., Rader, R., Ramesh, B.R., Ramirez-Pinilla, M.P., Ranganathan, J., Rasmussen, C., Redpath-Downing, N.A., Reid, J.L., Reis, Y.T., Rey Benayas, J.M., Rey-Velasco, J.C., Reynolds, C., Ribeiro, D.B., Richards, M.H., Richardson, B.A., Richardson, M.J., Ríos, R.M., Robinson, R., Robles, C.A., Römbke, J., Romero-Duque, L.P., Rös, M., Rosselli, L., Rossiter, S.J., Roth, D.S., Roulston, T.H., Rousseau, L., Rubio, A.V., Ruel, J.-C., Sadler, J.P., Sáfián, S., Saldaña-Vázquez, R.A., Sam, K., Samnegård, U., Santana, J., Santos, X., Savage, J., Schellhorn, N.A., Schilthuizen, M., Schmiedel, U., Schmitt, C.B., Schon, N.L., Schüepp, C., Schumann, K., Schweiger, O., Scott, D.M., Scott, K.A., Sedlock, J.L., Seefeldt, S.S., Shahabuddin, G., Shannon, G., Sheil, D., Sheldon, F.H., Shochat, E., Siebert, S.J., Silva, F.A.B., Simonetti, J.A., Slade, E.M., Smith, J., Smith-Pardo, A.H., Sodhi, N.S., Somarriba, E.J., Sosa, R.A., Soto Quiroga, G., St-Laurent, M.-H., Starzomski, B.M., Stefanescu, C., Steffan-Dewenter, I., Stouffer, P.C., Stout, J.C., Strauch, A.M., Struebig, M.J., Su, Z., Suarez-Rubio, M., Sugiura, S., Summerville, K.S., Sung, Y.-H., Sutrisno, H., Svenning, J.-C., Teder, T., Threlfall, C.G., Tiitsaar, A., Todd, J.H., Tonietto, R.K., Torre, I., Tóthmérész, B., Tscharntke, T., Turner, E.C., Tylianakis, J.M., Uehara-Prado, M., Urbina-Cardona, N., Vallan, D., Vanbergen, A.J., Vasconcelos, H.L., Vassilev, K., Verboven, H.A.F., Verdasca, M.J., Verdú, J.R., Vergara, C.H., Vergara, P.M., Verhulst, J., Virgilio, M., Vu, L.V., Waite, E.M., Walker, T.R., Wang, H.-F., Wang, Y., Watling, J.I., Weller, B., Wells, K., Westphal, C., Wiafe, E.D., Williams, C.D., Willig, M.R., Woinarski, J.C.Z., Wolf, J.H.D., Wolters, V., Woodcock, B.A., Wu, J., Wunderle, J.M., Yamaura, Y., Yoshikura, S., Yu, D.W., Zaitsev, A.S., Zeidler, J., Zou, F., Collen, B., Ewers, R.M., Mace, G.M., Purves, D.W., Scharlemann, J.P.W., Purvis, A., Hudson, L.N., Newbold, T., Contu, S., Hill, S.L.L., Lysenko, I., De Palma, A., Phillips, H.R.P., Alhusseini, T.I., Bedford, F.E., Bennett, D.J., Booth, H., Burton, V.J., Chng, C.W.T., Choimes, A., Correia, D.L.P., Day, J., Echeverría-Londoño, S., Emerson, S.R., Gao, D., Garon, M., Harrison, M.L.K., Ingram, D.J., Jung, M., Kemp, V., Kirkpatrick, L., Martin, C.D., Pan, Y., Pask-Hale, G.D., Pynegar, E.L., Robinson, A.N., Sanchez-Ortiz, K., Senior, R.A., Simmons, B.I., White, H.J., Zhang, H., Aben, J., Abrahamczyk, S., Adum, G.B., Aguilar-Barquero, V., Aizen, M.A., Albertos, B., Alcala, E.L., del Mar Alguacil, M., Alignier, A., Ancrenaz, M., Andersen, A.N., Arbeláez-Cortés, E., Armbrecht, I., Arroyo-Rodríguez, V., Aumann, T., Axmacher, J.C., Azhar, B., Azpiroz, A.B., Baeten, L., Bakayoko, A., Báldi, A., Banks, J.E., Baral, S.K., Barlow, J., Barratt, B.I.P., Barrico, L., Bartolommei, P., Barton, D.M., Basset, Y., Batáry, P., Bates, A.J., Baur, B., Bayne, E.M., Beja, P., Benedick, S., Berg, A., Bernard, H., Berry, N.J., Bhatt, D., Bicknell, J.E., Bihn, J.H., Blake, R.J., Bobo, K.S., Bóçon, R., Boekhout, T., Böhning-Gaese, K., Bonham, K.J., Borges, P.A.V., Borges, S.H., Boutin, C., Bouyer, J., Bragagnolo, C., Brandt, J.S., Brearley, F.Q., Brito, I., Bros, V., Brunet, J., Buczkowski, G., Buddle, C.M., Bugter, R., Buscardo, E., Buse, J., Cabra-García, J., Cáceres, N.C., Cagle, N.L., Calviño-Cancela, M., Cameron, S.A., Cancello, E.M., Caparrós, R., Cardoso, P., Carpenter, D., Carrijo, T.F., Carvalho, A.L., Cassano, C.R., Castro, H., Castro-Luna, A.A., Rolando, C.B., Cerezo, A., Chapman, K.A., Chauvat, M., Christensen, M., Clarke, F.M., Cleary, D.F.R., Colombo, G., Connop, S.P., Craig, M.D., Cruz-López, L., Cunningham, S.A., D'Aniello, B., D'Cruze, N., da Silva, P.G., Dallimer, M., Danquah, E.Y., Darvill, B., Dauber, J., Davis, A.L.V., Dawson, J., de Sassi, C., de Thoisy, B., Deheuvels, O., Dejean, A., Devineau, J.-L., Diekötter, T., Dolia, J.V., Domínguez, E., Dominguez-Haydar, Y., Dorn, S., Draper, I., Dreber, N., Dumont, B., Dures, S.G., Dynesius, M., Edenius, L., Eggleton, P., Eigenbrod, F., Elek, Z., Entling, M.H., Esler, K.J., de Lima, R.F., Faruk, A., Farwig, N., Fayle, T.M., Felicioli, A., Felton, A.M., Fensham, R.J., Fernandez, I.C., Ferreira, C.C., Ficetola, G.F., Fiera, C., Filgueiras, B.K.C., Fırıncıoğlu, H.K., Flaspohler, D., Floren, A., Fonte, S.J., Fournier, A., Fowler, R.E., Franzén, M., Fraser, L.H., Fredriksson, G.M., Freire, G.B., Frizzo, T.L.M., Fukuda, D., Furlani, D., Gaigher, R., Ganzhorn, J.U., García, K.P., Garcia-R, J.C., Garden, J.G., Garilleti, R., Ge, B.-M., Gendreau-Berthiaume, B., Gerard, P.J., Gheler-Costa, C., Gilbert, B., Giordani, P., Giordano, S., Golodets, C., Gomes, L.G.L., Gould, R.K., Goulson, D., Gove, A.D., Granjon, L., Grass, I., Gray, C.L., Grogan, J., Gu, W., Guardiola, M., Gunawardene, N.R., Gutierrez, A.G., Gutiérrez-Lamus, D.L., Haarmeyer, D.H., Hanley, M.E., Hanson, T., Hashim, N.R., Hassan, S.N., Hatfield, R.G., Hawes, J.E., Hayward, M.W., Hébert, C., Helden, A.J., Henden, J.-A., Henschel, P., Hernández, L., Herrera, J.P., Herrmann, F., Herzog, F., Higuera-Diaz, D., Hilje, B., Hofer, H., Hoffmann, A., Horgan, F.G., Hornung, E., Horváth, R., Hylander, K., Isaacs-Cubides, P., Ishida, H., Ishitani, M., Jacobs, C.T., Jaramillo, V.J., Jauker, B., Hernández, F.J., Johnson, M.F., Jolli, V., Jonsell, M., Juliani, S.N., Jung, T.S., Kapoor, V., Kappes, H., Kati, V., Katovai, E., Kellner, K., Kessler, M., Kirby, K.R., Kittle, A.M., Knight, M.E., Knop, E., Köhler, F., Koivula, M., Kolb, A., Kone, M., Kőrösi, Á., Krauss, J., Kumar, A., Kumar, R., Kurz, D.J., Kutt, A.S., Lachat, T., Lantschner, V., Lara, F., Lasky, J.R., Latta, S.C., Laurance, W.F., Lavelle, P., Le Féon, V., LeBuhn, G., Légaré, J.-P., Lehouck, V., Lencinas, M.V., Lentini, P.E., Letcher, S.G., Li, Q., Litchwark, S.A., Littlewood, N.A., Liu, Y., Lo-Man-Hung, N., López-Quintero, C.A., Louhaichi, M., Lövei, G.L., Lucas-Borja, M.E., Luja, V.H., Luskin, M.S., MacSwiney G, M.C., Maeto, K., Magura, T., Mallari, N.A., Malone, L.A., Malonza, P.K., Malumbres-Olarte, J., Mandujano, S., Måren, I.E., Marin-Spiotta, E., Marsh, C.J., Marshall, E.J.P., Martínez, E., Martínez Pastur, G., Moreno Mateos, D., Mayfield, M.M., Mazimpaka, V., McCarthy, J.L., McCarthy, K.P., McFrederick, Q.S., McNamara, S., Medina, N.G., Medina, R., Mena, J.L., Mico, E., Mikusinski, G., Milder, J.C., Miller, J.R., Miranda-Esquivel, D.R., Moir, M.L., Morales, C.L., Muchane, M.N., Muchane, M., Mudri-Stojnic, S., Munira, A.N., Muoñz-Alonso, A., Munyekenye, B.F., Naidoo, R., Naithani, A., Nakagawa, M., Nakamura, A., Nakashima, Y., Naoe, S., Nates-Parra, G., Navarrete Gutierrez, D.A., Navarro-Iriarte, L., Ndang'ang'a, P.K., Neuschulz, E.L., Ngai, J.T., Nicolas, V., Nilsson, S.G., Noreika, N., Norfolk, O., Noriega, J.A., Norton, D.A., Nöske, N.M., Nowakowski, A.J., Numa, C., O'Dea, N., O'Farrell, P.J., Oduro, W., Oertli, S., Ofori-Boateng, C., Oke, C.O., Oostra, V., Osgathorpe, L.M., Otavo, S.E., Page, N.V., Paritsis, J., Parra-H, A., Parry, L., Pe'er, G., Pearman, P.B., Pelegrin, N., Pélissier, R., Peres, C.A., Peri, P.L., Persson, A.S., Petanidou, T., Peters, M.K., Pethiyagoda, R.S., Phalan, B., Philips, T.K., Pillsbury, F.C., Pincheira-Ulbrich, J., Pineda, E., Pino, J., Pizarro-Araya, J., Plumptre, A. J., Poggio, S.L., Politi, N., Pons, P., Poveda, K., Power, E.F., Presley, S.J., Proença, V., Quaranta, M., Quintero, C., Rader, R., Ramesh, B.R., Ramirez-Pinilla, M.P., Ranganathan, J., Rasmussen, C., Redpath-Downing, N.A., Reid, J.L., Reis, Y.T., Rey Benayas, J.M., Rey-Velasco, J.C., Reynolds, C., Ribeiro, D.B., Richards, M.H., Richardson, B.A., Richardson, M.J., Ríos, R.M., Robinson, R., Robles, C.A., Römbke, J., Romero-Duque, L.P., Rös, M., Rosselli, L., Rossiter, S.J., Roth, D.S., Roulston, T.H., Rousseau, L., Rubio, A.V., Ruel, J.-C., Sadler, J.P., Sáfián, S., Saldaña-Vázquez, R.A., Sam, K., Samnegård, U., Santana, J., Santos, X., Savage, J., Schellhorn, N.A., Schilthuizen, M., Schmiedel, U., Schmitt, C.B., Schon, N.L., Schüepp, C., Schumann, K., Schweiger, O., Scott, D.M., Scott, K.A., Sedlock, J.L., Seefeldt, S.S., Shahabuddin, G., Shannon, G., Sheil, D., Sheldon, F.H., Shochat, E., Siebert, S.J., Silva, F.A.B., Simonetti, J.A., Slade, E.M., Smith, J., Smith-Pardo, A.H., Sodhi, N.S., Somarriba, E.J., Sosa, R.A., Soto Quiroga, G., St-Laurent, M.-H., Starzomski, B.M., Stefanescu, C., Steffan-Dewenter, I., Stouffer, P.C., Stout, J.C., Strauch, A.M., Struebig, M.J., Su, Z., Suarez-Rubio, M., Sugiura, S., Summerville, K.S., Sung, Y.-H., Sutrisno, H., Svenning, J.-C., Teder, T., Threlfall, C.G., Tiitsaar, A., Todd, J.H., Tonietto, R.K., Torre, I., Tóthmérész, B., Tscharntke, T., Turner, E.C., Tylianakis, J.M., Uehara-Prado, M., Urbina-Cardona, N., Vallan, D., Vanbergen, A.J., Vasconcelos, H.L., Vassilev, K., Verboven, H.A.F., Verdasca, M.J., Verdú, J.R., Vergara, C.H., Vergara, P.M., Verhulst, J., Virgilio, M., Vu, L.V., Waite, E.M., Walker, T.R., Wang, H.-F., Wang, Y., Watling, J.I., Weller, B., Wells, K., Westphal, C., Wiafe, E.D., Williams, C.D., Willig, M.R., Woinarski, J.C.Z., Wolf, J.H.D., Wolters, V., Woodcock, B.A., Wu, J., Wunderle, J.M., Yamaura, Y., Yoshikura, S., Yu, D.W., Zaitsev, A.S., Zeidler, J., Zou, F., Collen, B., Ewers, R.M., Mace, G.M., Purves, D.W., Scharlemann, J.P.W., and Purvis, A.

Abstract

The PREDICTS project—Projecting Responses of Ecological Diversity In Changing Terrestrial Systems (www.predicts.org.uk)—has collated from published studies a large, reasonably representative database of comparable samples of biodiversity from multiple sites that differ in the nature or intensity of human impacts relating to land use. We have used this evidence base to develop global and regional statistical models of how local biodiversity responds to these measures. We describe and make freely available this 2016 release of the database, containing more than 3.2 million records sampled at over 26,000 locations and representing over 47,000 species. We outline how the database can help in answering a range of questions in ecology and conservation biology. To our knowledge, this is the largest and most geographically and taxonomically representative database of spatial comparisons of biodiversity that has been collated to date; it will be useful to researchers and international efforts wishing to model and understand the global status of biodiversity.

Published
2016

19. Trichosomoides nasalis (Nematoda: Trichinelloidea) in the murid host Arvicanthis niloticus: Migration to the epithelium of the nasal mucosa after intramuscular development

Author

Fall, E.H., Diagne, M., Martin, Coralie, Mutafchiev, Y., Granjon, L., BÂ, K., Junker, K., Bain, O., École Supérieure Polytechnique de Dakar (ESP), Université Cheikh Anta Diop [Dakar, Sénégal] (UCAD), Laboratoire de Parasitologie, Dakar, Sénégal, Molécules de Communication et Adaptation des Micro-organismes (MCAM), Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS), Origine, structure et évolution de la biodiversité (OSEB), Bulgarian Academy of Sciences (BAS), Institute of Biodiversity and Ecosystem Research, Centre de Biologie pour la Gestion des Populations (UMR CBGP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Université de Montpellier (UM)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Campus International UCAD-IRD [Dakar, Senegal], and Onderstepoort Veterinary Institute (ARC - OVI)

Subjects
site d’accouplement, [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology, rongeur, voie migratoire, Trichinella, Trichosomoides, rodent, migratory route, mating site
Abstract

International audience; Knowledge of the biology of the trichinelloid subfamily Trichosomoidinae is poor. Trichosomoides nasalis is a common parasite of Arvicanthis niloticus (Muridae) in Senegal, and a procedure for experimental infections has been established. It has been demonstrated that larvae develop in striated muscle fibres, similar to Trichinella spp., but they are not arrested in the first stage, and they reach the adult stage within three weeks. In the present histological study it is shown that T. nasalis females and dwarf males migrate from the abdomen and thorax to the host’s muzzle, moving through connective tissues and between muscles. A few migrating specimens were also found in the blood vessels of the nasal mucosa. While sexes were still separated in the lamina propria of the mucosa, females recovered from the epithelium contained intra-uterine males. Worms were found between the incisors in the mucosa of the anterior and median conchae which are rich in mucous cells. Only the pseudostratified epithelium was parasitized. Under natural conditions, the inflammation of the nasal mucosa that is induced by the parasites might reduce the competitiveness of infected rodents when foraging or looking for potential mates.; La biologie de la sous-famille des Trichosomoidinae est peu connue. Trichosomoides nasalis est un parasite commun d’Arvicanthis niloticus (Muridae) au Sénégal, et une procédure d’infestation expérimentale a été mise au point. Il a été démontré que les larves se développent dans les muscles striés, comme pour Trichinella spp, mais elles ne s’arrêtent pas au premier stade et atteignent le stade adulte en trois semaines. Cette étude histologique montre que les femelles et des mâles nains de T. nasalis migrent depuis l’abdomen et le thorax jusqu’au museau de l’hôte, et se déplacent à travers le tissus conjonctif entre les muscles. Quelques spécimens en migration ont également été observés dans les vaisseaux sanguins de la muqueuse nasale. Si les sexes sont toujours séparés dans le lamina propria de la muqueuse, des mâles intra-utérins sont observés chez des femelles au niveau de l’épithélium. Au niveau nasal, des vers ont été trouvés entre les cornets antérieurs et médians riches en cellules muqueuses. Seul l’épithélium pseudo-stratifié est parasité. En condition naturelle, l’inflammation de la muqueuse nasale provoquée par les parasites pourrait réduire la capacité des rongeurs infectés dans leur recherche de nourriture ou de partenaires

Published
2012
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20. Permanent Genetic Resources added to Molecular Ecology Resources Database 1 October 2010‚ 30 November 2010

Author

Agostini, Cecilia, Agudelo, P. A., Bâ, K., Barber, P. A., Bisol, PAOLO MARIA, Brouat, C., Burgess, TREENA I., Calves, I., MAURICIO CARRILLO AVILA, Chow, S., Lisa, Cordes, DA SILVA, D., Dalecky, A., DE MEESTER, L., Ignacio, Doadrio, Dobigny, G., Duplantier, J. M., Evison, SOPHIE E. F., Rebecca, Ford, Dominique, Fresneau, GALETTI JR, PEDRO M., Gauthier, P., Geldof, S., Granjon, L., Guérin, F., HARDY STJ, GILES E., CARLOS HERNANDEZ ESCOBAR, Hima, K., Juan, Hu, Luqi, Huang, Humeau, L., Jansen, B., Jaquemet, S., ZHI QIANG JIANG, SUNG JU JUNG, BONG SEOK KIM, CHEOL HEE KIM, JONG OH KIM, CHOAY HOONG LAI, Laroche, J., Lavergne, E., LAWTON RAUH, A., LE CORRE, M., Leach, M. M., Jehee, Lee, Leo, AUDREY E., Judith, Lichtenzveig, Lin, Lin, Linde, CELESTE C., SHU FANG LIU, Marino, ILARIA ANNA MARIA, Mckeown, NIALL J., Nohara, K., MYUNG JOO OH, Okamoto, H., Richard, Oliver, MARTHA OLIVERA ANGEL, CLAUDIA PATRICIA ORNELAS GARCÍA, Orsini, L., HENRY OSTOS ALFONSO, Othman, A. S., Papetti, Chiara, Patarnello, Tomaso, CARLOS PEDRAZA LARA, Piller, KYLE R., Chantal, Poteaux, Requier, J. B., Roziana, M. K., Semba, Y., Sembene, M., Shah, RAMISAH M., Shahril, A. R., Aijuan, Shao, Shaw, PAUL W., Liangke, Song, RONARA SOUZA FERREIRA, YONG QUAN SU, Suzuki, N., Tatard, C., Taylor, KATHERINE M., Taylor, PAUL W. J., Thiam, M., Ruben, Valbuena, Wang, He, BYUNG GYOO YANG, Qingjun, Yuan, Zajonz, U., Zane, Lorenzo, Ling, Zhu, and Zulaiha, ZHI MENG ZHUANG AND A. R.

Subjects
molecular markers, Population genetics, microsatellites
Published
2011

21. IRIM at TRECVID2009: High Level Feature Extraction

Author

Delezoide, B., Le Borgne, H., Moëllic, P. -A, Gorisse, D., Precioso, F., Wang, F., Merialdo, B., Gosselin, P., Granjon, L., Pellerin, D., Rombaut, M., Bredin, H., Koenig, L., Lachambre, H., El Khoury, E., Boris Mansencal, Zhou, Y., Benois-Pineau, J., Jégou, H., Ayache, S., Safadi, B., Quénot, G., Fabrizio, J., Cord, M., Glotin, H., Zhao, Z., Dumont, E., Augereau, B., Laboratoire d'Intégration des Systèmes et des Technologies (LIST (CEA)), Direction de Recherche Technologique (CEA) (DRT (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Equipes Traitement de l'Information et Systèmes (ETIS - UMR 8051), Ecole Nationale Supérieure de l'Electronique et de ses Applications (ENSEA)-Centre National de la Recherche Scientifique (CNRS)-CY Cergy Paris Université (CY), Eurecom [Sophia Antipolis], MIDI, Ecole Nationale Supérieure de l'Electronique et de ses Applications (ENSEA)-Centre National de la Recherche Scientifique (CNRS)-CY Cergy Paris Université (CY)-Ecole Nationale Supérieure de l'Electronique et de ses Applications (ENSEA)-Centre National de la Recherche Scientifique (CNRS)-CY Cergy Paris Université (CY), GIPSA-Services (GIPSA-Services), Grenoble Images Parole Signal Automatique (GIPSA-lab), Université Pierre Mendès France - Grenoble 2 (UPMF)-Université Stendhal - Grenoble 3-Université Joseph Fourier - Grenoble 1 (UJF)-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP )-Centre National de la Recherche Scientifique (CNRS)-Université Pierre Mendès France - Grenoble 2 (UPMF)-Université Stendhal - Grenoble 3-Université Joseph Fourier - Grenoble 1 (UJF)-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP )-Centre National de la Recherche Scientifique (CNRS), GIPSA - Architecture, Géométrie, Perception, Images, Gestes (GIPSA-AGPIG), Département Images et Signal (GIPSA-DIS), Université Pierre Mendès France - Grenoble 2 (UPMF)-Université Stendhal - Grenoble 3-Université Joseph Fourier - Grenoble 1 (UJF)-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP )-Centre National de la Recherche Scientifique (CNRS)-Université Pierre Mendès France - Grenoble 2 (UPMF)-Université Stendhal - Grenoble 3-Université Joseph Fourier - Grenoble 1 (UJF)-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP )-Centre National de la Recherche Scientifique (CNRS)-Grenoble Images Parole Signal Automatique (GIPSA-lab), Équipe Structuration, Analyse et MOdélisation de documents Vidéo et Audio (IRIT-SAMoVA), Institut de recherche en informatique de Toulouse (IRIT), Université Toulouse Capitole (UT Capitole), Université de Toulouse (UT)-Université de Toulouse (UT)-Université Toulouse - Jean Jaurès (UT2J), Université de Toulouse (UT)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Toulouse Mind & Brain Institut (TMBI), Université Toulouse - Jean Jaurès (UT2J), Université de Toulouse (UT)-Université de Toulouse (UT)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université Toulouse Capitole (UT Capitole), Université de Toulouse (UT), Centre National de la Recherche Scientifique (CNRS), Laboratoire Bordelais de Recherche en Informatique (LaBRI), Université de Bordeaux (UB)-École Nationale Supérieure d'Électronique, Informatique et Radiocommunications de Bordeaux (ENSEIRB)-Centre National de la Recherche Scientifique (CNRS), Learning and recognition in vision (LEAR), Inria Grenoble - Rhône-Alpes, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Jean Kuntzmann (LJK), Université Pierre Mendès France - Grenoble 2 (UPMF)-Université Joseph Fourier - Grenoble 1 (UJF)-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP )-Centre National de la Recherche Scientifique (CNRS)-Université Pierre Mendès France - Grenoble 2 (UPMF)-Université Joseph Fourier - Grenoble 1 (UJF)-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP )-Centre National de la Recherche Scientifique (CNRS), Laboratoire d'informatique Fondamentale de Marseille - UMR 6166 (LIF), Université de la Méditerranée - Aix-Marseille 2-Université de Provence - Aix-Marseille 1-Centre National de la Recherche Scientifique (CNRS), Laboratoire d'Informatique de Grenoble (LIG), Université Pierre Mendès France - Grenoble 2 (UPMF)-Université Joseph Fourier - Grenoble 1 (UJF)-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP )-Institut National Polytechnique de Grenoble (INPG)-Centre National de la Recherche Scientifique (CNRS), Machine Learning and Information Retrieval (MALIRE), Laboratoire d'Informatique de Paris 6 (LIP6), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS), Laboratoire des Sciences de l'Information et des Systèmes (LSIS), Aix Marseille Université (AMU)-Université de Toulon (UTLN)-Arts et Métiers Paristech ENSAM Aix-en-Provence-Centre National de la Recherche Scientifique (CNRS), SIC, XLIM (XLIM), Université de Limoges (UNILIM)-Centre National de la Recherche Scientifique (CNRS)-Université de Limoges (UNILIM)-Centre National de la Recherche Scientifique (CNRS)-Université de Poitiers, GDR ISIS, IRIM, ICONES, Laboratoire d'Intégration des Systèmes et des Technologies (LIST), CY Cergy Paris Université (CY)-Centre National de la Recherche Scientifique (CNRS)-Ecole Nationale Supérieure de l'Electronique et de ses Applications (ENSEA), CY Cergy Paris Université (CY)-Centre National de la Recherche Scientifique (CNRS)-Ecole Nationale Supérieure de l'Electronique et de ses Applications (ENSEA)-CY Cergy Paris Université (CY)-Centre National de la Recherche Scientifique (CNRS)-Ecole Nationale Supérieure de l'Electronique et de ses Applications (ENSEA), GIPSA - Géométrie, Perception, Images, Geste (GIPSA-GPIG), Université Toulouse 1 Capitole (UT1), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Université Toulouse - Jean Jaurès (UT2J)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Toulouse 1 Capitole (UT1), Université Fédérale Toulouse Midi-Pyrénées, Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS)-École Nationale Supérieure d'Électronique, Informatique et Radiocommunications de Bordeaux (ENSEIRB), Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP )-Institut National Polytechnique de Grenoble (INPG)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre Mendès France - Grenoble 2 (UPMF)-Université Joseph Fourier - Grenoble 1 (UJF), Centre National de la Recherche Scientifique (CNRS)-Arts et Métiers Paristech ENSAM Aix-en-Provence-Université de Toulon (UTLN)-Aix Marseille Université (AMU), and Mansencal, Boris

Subjects
descriptors, fusion, ComputingMethodologies_PATTERNRECOGNITION, classification, [INFO.INFO-IR]Computer Science [cs]/Information Retrieval [cs.IR], InformationSystems_INFORMATIONSTORAGEANDRETRIEVAL, [INFO.INFO-IR] Computer Science [cs]/Information Retrieval [cs.IR], high level features extraction
Abstract

International audience; The IRIM group is a consortium of French teams working on Multimedia Indexing and Retrieval. This paper describes our participation to the TRECVID 2009 High Level Features detection task. We evaluated a large number of different descriptors (on TRECVID 2008 data) and tried different fusion strategies, in particular hierarchical fusion and genetic fusion. The best IRIM run has a Mean Inferred Average Precision of 0.1220, which is significantly above TRECVID 2009 HLF detection task median performance. We found that fusion of the classification scores from different classifier types improves the performance and that even with a quite low individual performance, audio descriptors can help.

Published
2009

22. Compared phylogeography of two forest rodent sibling species (Praomys rostratus and P. tullbergi) in West Africa: Differential reactions to past forest fragmentation

Author

Nicolas, V., Bryja, J., Akpatou, B., Konecny, A., Emilie, Lecompte, Colyn, M., Lalis, A., Couloux, A., Denys, C., Granjon, L., Evolution et Diversité Biologique (EDB), Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), and Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées

Subjects
[SDV.EE]Life Sciences [q-bio]/Ecology, environment, [SDV.BID]Life Sciences [q-bio]/Biodiversity
Published
2008

25. Unusually extensive karyotype reorganization in four congeneric Gerbillus species (Muridae: Gerbillinae)

Author

Vm, Aniskin, Benazzou, T., Biltueva, L., Dobigny, G., Granjon, L., Volobouev, V., Origine, structure et évolution de la biodiversité (OSEB), and Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS)

Subjects
[SDV.BID]Life Sciences [q-bio]/Biodiversity
Abstract

Comparative analysis of the G- and C-banding patterns in four morphologically poorly differentiated Gerbillus species (G. pyramidum, G. perpallidus, G. tarabuli and G. occiduus) was carried out. These gerbils have similar karyotype morphology with 2n and NF equal to 38/76, 40/76, 40/78 and 40/80, respectively. Our study revealed that possibly 70 Robertsonian (Rb) fusions, two pericentric inversions, one tandem translocation and at least 13 non-identified rearrangements have occurred during the karyotypic evolution of these species. The number of chromosomal changes by which any of these species differ from each other ranges from 33 to 49. One Rb fusion was common to two of the species, with only a single autosome- gonosome translocation shared by all four, suggesting a monophyletic origin of these karyotypically highly divergent species. Based on the chromosomal data obtained here, the systematic and geographic implications for these North African species are also discussed. Copyright (c) 2006 S. Karger AG, Basel

Published
2006

27. Interplay between historical and current features of the cityscape in shaping the genetic structure of the house mouse (Mus musculus domesticus) in Dakar (Senegal, West Africa)

Author

Stragier, Claire, Piry, Sylvain, Loiseau, Anne, Kane, Mamadou, Sow, Aliou, Niang, Youssoupha, Diallo, Mamoudou, Ndiaye, Arame, Gauthier, Philippe, Borderon, Marion, Granjon, Laurent, Brouat, Carine, and Berthier, Karine

Subjects
Archaeology, CC1-960, Science
Abstract

Population genetic approaches may be used to investigate dispersal patterns of species living in highly urbanized environment in order to improve management strategies for biodiversity conservation or pest control. However, in such environment, population genetic structure may reflect both current features of the cityscape and urbanization history. This can be especially relevant when focusing on exotic commensal rodents that have been introduced in numerous primary colonial European settlements. Accounting for spatial and temporal cityscape heterogeneity to determine how past and recent demographic events may interplay to shape current population genetic structure of synanthropic rodents may provide useful insights to manage their populations. In this study, we addressed these issues by focusing on the house mouse, Mus musculus domesticus, in Dakar, Senegal, where the species may have been introduced as soon as Europeans settled in the middle of the nineteenth century. We examined genetic variation at one mitochondrial locus and 15 nuclear microsatellite markers from individuals sampled in 14 sampling sites representing different stages of urbanization history and different socio-economic environments in Dakar. We used various approaches, including model-based genetic clustering and model-free smoothing of pairwise genetic estimates. We further linked observed spatial genetic patterns to historical and current features of Dakar cityscape using random forest and Bayesian conditional autoregressive models. Results are consistent with an introduction of the house mouse at colonial time and the current genetic structure exhibits a gradient-like pattern reflecting the historical process of spatially continuous expansion of the city from the first European settlement. The genetic patterns further suggest that population dynamics of the house mouse is also driven by the spatial heterogeneity of the current cityscape, including socio-economics features, that translate in habitat quality. Our results highlight the potential importance of accounting for past demographic events to understand spatial genetic patterns of nonnative invasive commensal rodents in highly urbanized environment.

Published
2022
Full Text
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28. Permanent genetic resources added to Molecular Ecology Resources Database 1 October 2010-30 November 2010

Author

Agostini, C., Agudelo, P.A., Ba, K., Barber, P.A., Bisol, P.M., Brouat, C., Burgess, T.I., Calves, I., Carrillo Avila, M., Chow, S., Cordes, L., Da Silva, D., Dalecky, A., De Meester, L., Doadrio, I., Dobigny, G., Duplantier, J.M., Evison, S.E.F., Ford, R., Fresneau, D., Galetti, P.M., Gauthier, P., Geldof, S., Granjon, L., Guerin, F., Hardy, G.E.St.J., Escobar, C.H., Hima, K., Hu, J., Huang, L., Humeau, L., Jansen, B., Jaquemet, S., Jiang, Z-Q, Jung, S-J, Kim, B-S, Kim, C-H, Kim, J-O, Lai, C-H, Laroche, J., Lavergne, E., Lawton-Rauh, A., Le Corre, M., Leach, M.M., Lee, J., Leo, A.E., Lichtenzveig, J., Lin, L., Linde, C.C., Liu, S-F, Marino, I.A.M., McKeown, N.J., Nohara, K., Oh, M-J, Okamoto, H., Oliver, R.P., Olivera Angel, M., Ornelas-Garcia, C.P., Orsini, L., Ostos Alfonso, H., Othman, A.S., Papetti, C., Patarnello, T., Pedraza-Lara, C., Piller, K.R., Poteaux, C., Requier, J-B, Roziana, M.K., Semba, Y., Sembene, M., Shah, R.M., Shahril, A.R., Shao, A., Shaw, P.W., Song, L., Souza Ferreira, R.S., Su, Y-Q, Suzuki, N., Tatard, C., Taylor, K.M., Taylor, P.W.J., Thiam, M., Valbuena, R., Wang, H., Yang, B-G, Yuan, Q., Zajonz, U., Zane, L., Zhu, L., Zhuang, Z-M, Zulaiha, A.R., Agostini, C., Agudelo, P.A., Ba, K., Barber, P.A., Bisol, P.M., Brouat, C., Burgess, T.I., Calves, I., Carrillo Avila, M., Chow, S., Cordes, L., Da Silva, D., Dalecky, A., De Meester, L., Doadrio, I., Dobigny, G., Duplantier, J.M., Evison, S.E.F., Ford, R., Fresneau, D., Galetti, P.M., Gauthier, P., Geldof, S., Granjon, L., Guerin, F., Hardy, G.E.St.J., Escobar, C.H., Hima, K., Hu, J., Huang, L., Humeau, L., Jansen, B., Jaquemet, S., Jiang, Z-Q, Jung, S-J, Kim, B-S, Kim, C-H, Kim, J-O, Lai, C-H, Laroche, J., Lavergne, E., Lawton-Rauh, A., Le Corre, M., Leach, M.M., Lee, J., Leo, A.E., Lichtenzveig, J., Lin, L., Linde, C.C., Liu, S-F, Marino, I.A.M., McKeown, N.J., Nohara, K., Oh, M-J, Okamoto, H., Oliver, R.P., Olivera Angel, M., Ornelas-Garcia, C.P., Orsini, L., Ostos Alfonso, H., Othman, A.S., Papetti, C., Patarnello, T., Pedraza-Lara, C., Piller, K.R., Poteaux, C., Requier, J-B, Roziana, M.K., Semba, Y., Sembene, M., Shah, R.M., Shahril, A.R., Shao, A., Shaw, P.W., Song, L., Souza Ferreira, R.S., Su, Y-Q, Suzuki, N., Tatard, C., Taylor, K.M., Taylor, P.W.J., Thiam, M., Valbuena, R., Wang, H., Yang, B-G, Yuan, Q., Zajonz, U., Zane, L., Zhu, L., Zhuang, Z-M, and Zulaiha, A.R.

Abstract

This article documents the addition of 277 microsatellite marker loci to the Molecular Ecology Resources Database. Loci were developed for the following species: Ascochyta rabiei, Cambarellus chapalanus, Chionodraco hamatus, Coptis omeiensis, Cynoscion nebulosus, Daphnia magna, Gerbillus nigeriae, Isurus oxyrinchus, Lates calcarifer, Metacarcinus magister, Oplegnathus fasciatus, Pachycondyla verenae, Phaethon lepturus, Pimelodus grosskopfii, Rotylenchulus reniformis, Scomberomorus niphonius, Sepia esculenta, Terapon jarbua, Teratosphaeria cryptica and Thunnus obesus. These loci were cross-tested on the following species: Austropotamobius italicus, Cambarellus montezumae, Cambarellus puer, Cambarellus shufeldtii, Cambarellus texanus, Chionodraco myersi, Chionodraco rastrospinosus, Coptis chinensis, Coptis chinensis var. brevisepala, Coptis deltoidea, Coptis teeta, Orconectes virilis, Pacifastacus leniusculus, Pimelodus bochii, Procambarus clarkii, Pseudopimelodus bufonius, Rhamdia quelen, Sepia andreana, Sepiella maindroni, Thunnus alalunga, Thunnus albacares, Thunnus maccoyii, Thunnus orientalis, Thunnus thynnus and Thunnus tonggol.

Published
2011

33. Plio‐Pleistocene history of West African Sudanian savanna and the phylogeography of the Praomys daltoni complex (Rodentia): the environment/geography/genetic interplay

Author

BRYJA, J., primary, GRANJON, L., additional, DOBIGNY, G., additional, PATZENHAUEROVÁ, H., additional, KONEČNÝ, A., additional, DUPLANTIER, J. M., additional, GAUTHIER, P., additional, COLYN, M., additional, DURNEZ, L., additional, LALIS, A., additional, and NICOLAS, V., additional

Published
2010
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39. Liste commentée des mammifères de la Station ORSTOM de M'Bour

Author

Duplantier, Jean-Marc, Granjon, L., and Ba, K.

Subjects
MAMMIFERE, ESPECE ANIMALE, POPULATION ANIMALE, ANATOMIE ANIMALE, INVENTAIRE FAUNISTIQUE, ESPECE LOCALE
Abstract

Ce rapport énumère une trentaine d'espèces de mammifères observées sur la station ORSTOM de M'Bour. Six ordres de mammifères sont représentés sur la station. Un seul manque par rapport au peuplement de la région; celui des Artiodactyles. La proximité de la ville et la petite taille de la station s'opposent au maintien d'une population naturelle de ces grands mammifères

Published
1991

45. Resynchronisation of a diurnal rodent circadian clock accelerated by a melatonin agonist.

Author

Van Reeth, Olivier, Olivares Fontt, Elizabeth, Turek, F.W., Granjon, L, Mocaer, Elisabeth, Van Reeth, Olivier, Olivares Fontt, Elizabeth, Turek, F.W., Granjon, L, and Mocaer, Elisabeth

Abstract

Using 'jet lag' paradigms involving phase shifts in the light-dark (LD) cycle, we studied the effects of S-20098 on the circadian clock of a diurnal rodent. Arvicanthis mordax, entrained to a regular LD cycle, were subjected to advance shifts (i.e. 4, 6 or 8 h) in the LD cycle and injected with vehicle or the melatonin agonist S-20098 (20 mg/kg) the day of the shift (and also on subsequent days in the 6 h or 8 h shift paradigms). In each condition, S-20098 accelerated by about 30% resynchronization to the new LD cycle. These data, which are the first to demonstrate the chronobiotic effects of a melatonin agonist in a diurnal rodent, provide new insights for the design of human chronopharmacological protocols., Journal Article, Research Support, Non-U.S. Gov't, Research Support, U.S. Gov't, P.H.S., SCOPUS: ar.j, info:eu-repo/semantics/published

Published
1998

47. Trichosomoides nasalis(Nematoda: Trichinelloidea) in the murid host Arvicanthis niloticus:Migration to the epithelium of the nasal mucosa after intramuscular development

Author

Fall, E.H., Diagne, M., Martin, C., Mutafchiev, Y., Granjon, L., Ba, K., Junker, K., Bain, O., Fall, E.H., Diagne, M., Martin, C., Mutafchiev, Y., Granjon, L., Ba, K., Junker, K., and Bain, O.

Abstract

Knowledge of the biology of the trichinelloid subfamily Trichosomoidinae is poor. Trichosomoides nasalisis a common parasite of Arvicanthis niloticus(Muridae) in Senegal, and a procedure for experimental infections has been established. It has been demonstrated that larvae develop in striated muscle fibres, similar to Trichinellaspp., but they are not arrested in the first stage, and they reach the adult stage within three weeks. In the present histological study it is shown that T. nasalisfemales and dwarf males migrate from the abdomen and thorax to the host’s muzzle, moving through connective tissues and between muscles. A few migrating specimens were also found in the blood vessels of the nasal mucosa. While sexes were still separated in the lamina propria of the mucosa, females recovered from the epithelium contained intra-uterine males. Worms were found between the incisors in the mucosa of the anterior and median conchae which are rich in mucous cells. Only the pseudostratified epithelium was parasitized. Under natural conditions, the inflammation of the nasal mucosa that is induced by the parasites might reduce the competitiveness of infected rodents when foraging or looking for potential mates.

Published
2012
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