140 results on '"Grandgirard, Virginie"'
Search Results
2. Transport barrier onset and edge turbulence shortfall in fusion plasmas
- Author
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Dif-Pradalier, Guilhem, Ghendrih, Philippe, Sarazin, Yanick, Camenen, Yann, Donnel, Peter, Garbet, Xavier, Grandgirard, Virginie, Munschy, Yann, Vermare, Laure, and Widmer, Fabien
- Subjects
Physics - Plasma Physics - Abstract
Turbulent plasmas notably self-organize to higher energy states upon application of additional free energy sources or modification of edge operating conditions. Mechanisms whereby such bifurcations occur have been actively debated for decades. Enhanced confinement occurs at the plasma edge, where a shortfall of predicted turbulence intensity has been puzzling scientists for decades. We show, from the primitive kinetic equations that both problems are connected and that interplay of confined plasma turbulence with its material boundaries is essential to curing the shortfall of predicted turbulence and to triggering spontaneous transport barrier onset at the plasma edge. Both problems determine access to improved confinement and are central to fusion research. A comprehensive discussion of the underlying mechanisms is proposed. These results, highly relevant to the quest for magnetic fusion may also be generic to many problems in fluids and plasmas where turbulence self-advection is active.
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- 2022
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- View/download PDF
3. Solver comparison for Poisson-like equations on tokamak geometries
- Author
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Bourne, Emily, Leleux, Philippe, Kormann, Katharina, Kruse, Carola, Grandgirard, Virginie, Güçlü, Yaman, Kühn, Martin J., Rüde, Ulrich, Sonnendrücker, Eric, and Zoni, Edoardo
- Published
- 2023
- Full Text
- View/download PDF
4. Non-uniform splines for semi-Lagrangian kinetic simulations of the plasma sheath
- Author
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Bourne, Emily, Munschy, Yann, Grandgirard, Virginie, Mehrenberger, Michel, and Ghendrih, Philippe
- Published
- 2023
- Full Text
- View/download PDF
5. Verification and accuracy check of simulations with PoPe and iPoPe
- Author
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Cartier-Michaud, Thomas, Ghendrih, Philippe, Grandgirard, Virginie, and Serre, Eric
- Published
- 2023
- Full Text
- View/download PDF
6. Targeting realistic geometry in Tokamak code Gysela
- Author
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Bouzat, Nicolas, Bressan, Camilla, Grandgirard, Virginie, Latu, Guillaume, and Mehrenberger, Michel
- Subjects
Physics - Plasma Physics ,Physics - Computational Physics - Abstract
In magnetically confined plasmas used in Tokamak, turbulence is responsible for specific transport that limits the performance of this kind of reactors. Gyrokinetic simulations are able to capture ion and electron turbulence that give rise to heat losses, but require also state-of-the-art HPC techniques to handle computation costs. Such simulations are a major tool to establish good operating regime in Tokamak such as ITER, which is currently being built. Some of the key issues to address more realistic gyrokinetic simulations are: efficient and robust numerical schemes, accurate geometric description, good parallelization algorithms. The framework of this work is the Semi-Lagrangian setting for solving the gyrokinetic Vlasov equation and the Gyseka code. In this paper, a new variant for the interpolation method is proposed that can handle the mesh singularity in the poloidal plane at r=0 (polar system is used for the moment in Gysela). A non-uniform meshing of the poloidal plane is proposed instead of uniform one in order to save memory and computations. The interpolation method, the gyroaverage operator, and the Poisson solver are revised in order to cope with non-uniform meshes. A mapping that establish a bijection from polar coordinates to more realistic plasma shape is used to improve realism. Convergence studies are provided to establish the validity and robustness of our new approach., Comment: Submitted to CEMRACS 2016 proceedings
- Published
- 2017
7. Author Correction: Transport barrier onset and edge turbulence shortfall in fusion plasmas
- Author
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Dif-Pradalier, Guilhem, Ghendrih, Philippe, Sarazin, Yanick, Caschera, Elisabetta, Clairet, Frédéric, Camenen, Yann, Donnel, Peter, Garbet, Xavier, Grandgirard, Virginie, Munschy, Yann, Vermare, Laure, and Widmer, Fabien
- Published
- 2022
- Full Text
- View/download PDF
8. Performance Portable Implementation of a Kinetic Plasma Simulation Mini-App
- Author
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Asahi, Yuuichi, Latu, Guillaume, Grandgirard, Virginie, Bigot, Julien, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Wienke, Sandra, editor, and Bhalachandra, Sridutt, editor
- Published
- 2020
- Full Text
- View/download PDF
9. Kinetic plasma-wall interaction using immersed boundary conditions
- Author
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Munschy, Yann, primary, Bourne, Emily, additional, Dif-Pradalier, Guilhem, additional, Donnel, Peter, additional, Ghendrih, Philippe, additional, Grandgirard, Virginie, additional, and Sarazin, Yanick, additional
- Published
- 2024
- Full Text
- View/download PDF
10. Some numerical aspects of the conservative PSM scheme in a 4D drift-kinetic code
- Author
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Braeunig, Jean-Philippe, Crouseilles, Nicolas, Grandgirard, Virginie, Latu, Guillaume, Mehrenberger, Michel, and Sonnendrücker, Eric
- Subjects
Mathematics - Numerical Analysis ,Computer Science - Numerical Analysis - Abstract
The purpose of this work is simulation of magnetised plasmas in the ITER project framework. In this context, kinetic Vlasov-Poisson like models are used to simulate core turbulence in the tokamak in a toroidal geometry. This leads to heavy simulations because a 6D dimensional problem has to be solved, even if reduced to a 5D in so called gyrokinetic models. Accurate schemes, parallel algorithms need to be designed to bear these simulations. This paper describes the numerical studies to improve robustness of the conservative PSM scheme in the context of its development in the GYSELA code. In this paper, we only consider the 4D drift-kinetic model which is the backbone of the 5D gyrokinetic models and relevant to build a robust and accurate numerical method.
- Published
- 2013
11. Non regression testing for the JOREK code
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Latu, Guillaume, Becoulet, Marina, Dif-Pradalier, Guilhem, Grandgirard, Virginie, Hoelzl, Matthias, Huysmans, G., Lacoste, Xavier, Nardon, Eric, Orain, Francois, Passeron, Chantal, Ramet, Pierre, and Ratnani, Ahmed
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Computer Science - Distributed, Parallel, and Cluster Computing ,Mathematics - Analysis of PDEs - Abstract
Non Regression Testing (NRT) aims to check if software modifications result in undesired behaviour. Suppose the behaviour of the application previously known, this kind of test makes it possible to identify an eventual regression, a bug. Improving and tuning a parallel code can be a time-consuming and difficult task, especially whenever people from different scientific fields interact closely. The JOREK code aims at investing Magnetohydrodynamic (MHD) instabilities in a Tokamak plasma. This paper describes the NRT procedure that has been tuned for this simulation code. Automation of the NRT is one keypoint to keeping the code healthy in a source code repository., Comment: No. RR-8134 (2012)
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- 2012
12. Accuracy of unperturbed motion of particles in a gyrokinetic semi-Lagrangian code
- Author
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Latu, Guillaume, Grandgirard, Virginie, Abiteboul, Jérémie, Bergot, Morgane, Crouseilles, Nicolas, Garbet, Xavier, Ghendrih, Philippe, Mehrenberger, Michel, Sarazin, Yanick, Sellama, Hocine, Sonnendrücker, Eric, and Zarzoso, David
- Subjects
Computer Science - Numerical Analysis ,Mathematics - Analysis of PDEs ,Mathematics - Numerical Analysis - Abstract
Inaccurate description of the equilibrium can yield to spurious effects in gyrokinetic turbulence simulations. Also, the Vlasov solver and time integration schemes impact the conservation of physical quantities, especially in long-term simulations. Equilibrium and Vlasov solver have to be tuned in order to preserve constant states (equilibrium) and to provide good conservation property along time (mass to begin with). Several illustrative simple test cases are given to show typical spurious effects that one can observes for poor settings. We explain why Forward Semi-Lagrangian scheme bring us some benefits. Some toroidal and cylindrical GYSELA runs are shown that use FSL., Comment: No. RR-8054 (2012)
- Published
- 2012
13. Test of some numerical limiters for the conservative PSM scheme for 4D Drift-Kinetic simulations
- Author
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Guterl, Jerome, Braeunig, Jean-Philippe, Crouseilles, Nicolas, Grandgirard, Virginie, Latu, Guillaume, Mehrenberger, Michel, and Sonnendrücker, Eric
- Subjects
Computer Science - Numerical Analysis ,Mathematical Physics ,Mathematics - Numerical Analysis - Abstract
The purpose of this work is simulation of magnetised plasmas in the ITER project framework. In this context, Vlasov-Poisson like models are used to simulate core turbulence in the tokamak in a toroidal geometry. This leads to heavy simulation because a 6D dimensional problem has to be solved, 3D in space and 3D in velocity. The model is reduced to a 5D gyrokinetic model, taking advantage of the particular motion of particles due to the presence of a strong magnetic field. However, accurate schemes, parallel algorithms need to be designed to bear these simulations. This paper describes a Hermite formulation of the conservative PSM scheme which is very generic and allows to implement different semi-Lagrangian schemes. We also test and propose numerical limiters which should improve the robustness of the simulations by diminishing spurious oscillations. We only consider here the 4D drift-kinetic model which is the backbone of the 5D gyrokinetic models and relevant to build a robust and accurate numerical method.
- Published
- 2010
14. Kinetic plasma-sheath self-organization
- Author
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Munschy, Yann, primary, Bourne, Emily, additional, Dif-Pradalier, Guilhem, additional, Donnel, Peter, additional, Ghendrih, Philippe, additional, Grandgirard, Virginie, additional, and Sarazin, Yanick, additional
- Published
- 2024
- Full Text
- View/download PDF
15. Performance Portable Implementation of a Kinetic Plasma Simulation Mini-App
- Author
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Asahi, Yuuichi, primary, Latu, Guillaume, additional, Grandgirard, Virginie, additional, and Bigot, Julien, additional
- Published
- 2020
- Full Text
- View/download PDF
16. Building and Auto-Tuning Computing Kernels: Experimenting with Boast and Starpu in the Gysela Code★
- Author
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Bigot Julien, Grandgirard Virginie, Latu Guillaume, Mehaut Jean-Francois, Millani Luís Felipe, Passeron Chantal, Masnada Steven Quinito, Richard Jérôme, and Videau Brice
- Subjects
Applied mathematics. Quantitative methods ,T57-57.97 ,Mathematics ,QA1-939 - Abstract
Modeling turbulent transport is a major goal in order to predict confinement performance in a tokamak plasma. The gyrokinetic framework considers a computational domain in five dimensions to look at kinetic issues in a plasma; this leads to huge computational needs. Therefore, optimization of the code is an especially important aspect, especially since coprocessors and complex manycore architectures are foreseen as building blocks for Exascale systems. This project aims to evaluate the applicability of two auto-tuning approaches with the BOAST and StarPU tools on the GYSELA code in order to circumvent performance portability issues. A specific computation intensive kernel is considered in order to evaluate the benefit of these methods. StarPU enables to match the performance and even sometimes outperform the hand-optimized version of the code while leaving scheduling choices to an automated process. BOAST on the other hand reveals to be well suited to get a gain in terms of execution time on four architectures. Speedups in-between 1.9 and 5.7 are obtained on a cornerstone computation intensive kernel.
- Published
- 2018
- Full Text
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17. Targeting Realistic Geometry in Tokamak Code Gysela★
- Author
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Bouzat Nicolas, Bressan Camilla, Grandgirard Virginie, Latu Guillaume, and Mehrenberger Michel
- Subjects
Applied mathematics. Quantitative methods ,T57-57.97 ,Mathematics ,QA1-939 - Abstract
In magnetically confined plasmas used in Tokamak, turbulence is respon-sible for specific transport that limits the performance of this kind of reactors. Gyroki-netic simulations are able to capture ion and electron turbulence that give rise to heat losses, but require also state-of-the-art HPC techniques to handle computation costs. Such simulations are a major tool to establish good operating regime in Tokamak such as ITER, which is currently being built. Some of the key issues to address more re- alistic gyrokinetic simulations are: efficient and robust numerical schemes, accurate geometric description, good parallelization algorithms. The framework of this work is the Semi-Lagrangian setting for solving the gyrokinetic Vlasov equation and the Gy-sela code. In this paper, a new variant for the interpolation method is proposed that can handle the mesh singularity in the poloidal plane at r = 0 (polar system is used for the moment in Gysela). A non-uniform meshing of the poloidal plane is proposed instead of uniform one in order to save memory and computations. The interpolation method, the gyroaverage operator, and the Poisson solver are revised in order to cope with non-uniform meshes. A mapping that establish a bijection from polar coordinates to more realistic plasma shape is used to improve realism. Convergence studies are provided to establish the validity and robustness of our new approach.
- Published
- 2018
- Full Text
- View/download PDF
18. Kinetic plasma-sheath self-organization
- Author
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Munschy, Yann, Bourne, Emily, Dif-Pradalier, Guilhem, Donnel, Peter, Ghendrih, Philippe, Grandgirard, Virginie, Sarazin, Yanick, Institut de Recherche sur la Fusion par confinement Magnétique (IRFM), Commissariat à l'énergie atomique et aux énergies alternatives (CEA), and European Project: 824158,H2020-EU.1.4. - EXCELLENT SCIENCE - Research Infrastructures ,EoCoE-II(2019)
- Subjects
Kinetic ,[PHYS]Physics [physics] ,Sheath ,simulation ,Plasma physics ,Plasma wall interaction - Abstract
The interaction between a plasma and a solid surface is studied in a (1D-1V) kinetic framework using a localized particle and convective energy source. Matching the quasineutral plasma region and sheath horizon is addressed in the fluid framework with a zero heat flux closure. It highlights non-polytropic nature of the physics of parallel transport. Shortfalls of this approach compared to a reference kinetic simulation, highlighting the importance of the heat flux, leads to addressing the sound velocity, non-collisional closure and higher moment closure. No gain in the predictive capability is obtained. The kinetic constraint at the sheath horizon is discussed and modified to account for conditions that are actually met in simulations, namely quasineutrality with a small but finite charge density. Analyzing the distribution functions shows that collisional transfer is mandatory to achieve steady-state self-organization on the open field lines.
- Published
- 2023
19. Optimization of the Gyroaverage operator based on Hermite interpolation
- Author
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Rozar Fabien, Steiner Christophe, Latu Guillaume, Mehrenberger Michel, Grandgirard Virginie, Bigot Julien, Cartier-Michaud Thomas, and Roman Jean
- Subjects
Applied mathematics. Quantitative methods ,T57-57.97 ,Mathematics ,QA1-939 - Abstract
Gyrokinetic modeling is appropriate for describing Tokamak plasma turbulence, and the gyroaverage operator is a cornerstone of this approach. In a gyrokinetic code, the gyroaveraging scheme needs to be accurate enough to avoid spoiling the data but also requires a low computation cost because it is applied often on the main unknown, the 5D guiding-center distribution function, and on the 3D electric potentials. In the present paper, we improve a gyroaverage scheme based on Hermite interpolation used in the Gysela code. This initial implementation represents a too large fraction of the total execution time. The gyroaverage operator has been reformulated and is now expressed as a matrix-vector product and a cache-friendly algorithm has been setup. Different techniques have been investigated to quicken the computations by more than a factor two. Description of the algorithms is given, together with an analysis of the achieved performance.
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- 2016
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20. Evaluating Kernels on Xeon Phi to accelerate Gysela application
- Author
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Latu Guillaume, Haefele Matthieu, Bigot Julien, Grandgirard Virginie, Cartier-Michaud Thomas, and Rozar Fabien
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Applied mathematics. Quantitative methods ,T57-57.97 ,Mathematics ,QA1-939 - Abstract
This work describes the challenges presented by porting parts of the Gysela code to the Intel Xeon Phi coprocessor, as well as techniques used for optimization, vectorization and tuning that can be applied to other applications. We evaluate the performance of some generic micro-benchmark on Phi versus Intel Sandy Bridge. Several interpolation kernels useful for the Gysela application are analyzed and the performances are shown. Some memory-bound and compute-bound kernels are accelerated by a factor 2 on the Phi device compared to Sandy architecture. Nevertheless, it is hard, if not impossible, to reach a large fraction of the peak performance on the Phi device, especially for real-life applications as Gysela. A collateral benefit of this optimization and tuning work is that the execution time of Gysela (using 4D advections) has decreased on a standard architecture such as Intel Sandy Bridge.
- Published
- 2016
- Full Text
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21. An approach to increase reliability of HPC simulation, application to the Gysela5D code
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Bigot Julien, Latu Guillaume, Cartier-Michaud Thomas, Grandgirard Virginie, Passeron Chantal, and Rozar Fabien
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Applied mathematics. Quantitative methods ,T57-57.97 ,Mathematics ,QA1-939 - Abstract
Reproducibility of results is a strong requirement in most fields of research for experimental results to be called science. For results obtained through simulation software using high performance computing (HPC) this translates as code quality requirements. While there are many works focusing on software quality, these typically do not take the specificities of HPC scientific simulation softwareinto account. This paper presents an approach to introduce quality procedures in HPC scientific simulation softwarewhile remaining the less invasive as possible so as to ease its adoption. The approach relies on quality procedures including human code review and automated testing and offers a dedicated procedure to help correct defects found this way. These procedures are integrated in a development work-flow designed to improve the traceability of defects. By implementing this approach for the development of the Gysela code, we show that it is indeed viable and that the return on investment is positive. We also identify multiple reusable elements developed for this experiment that should reduce the cost of adopting the approach for other codes as well as some aspects that can still be improved to ensure a widespread propagation of the approach in the community.
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- 2016
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22. Scalable Quasineutral Solver for Gyrokinetic Simulation
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Latu, Guillaume, Grandgirard, Virginie, Crouseilles, Nicolas, Dif-Pradalier, Guilhem, Hutchison, David, editor, Kanade, Takeo, editor, Kittler, Josef, editor, Kleinberg, Jon M., editor, Mattern, Friedemann, editor, Mitchell, John C., editor, Naor, Moni, editor, Nierstrasz, Oscar, editor, Pandu Rangan, C., editor, Steffen, Bernhard, editor, Sudan, Madhu, editor, Terzopoulos, Demetri, editor, Tygar, Doug, editor, Vardi, Moshe Y., editor, Weikum, Gerhard, editor, Wyrzykowski, Roman, editor, Dongarra, Jack, editor, Karczewski, Konrad, editor, and Waśniewski, Jerzy, editor
- Published
- 2012
- Full Text
- View/download PDF
23. Physics Informed Neural Networks Applied to the Description of Wave-Particle Resonance in Kinetic Simulations of Fusion Plasmas
- Author
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Kumar, Jai, primary, Zarzoso, David, additional, Grandgirard, Virginie, additional, ebert, jan, additional, and Kesselheim, Stefan, additional
- Published
- 2023
- Full Text
- View/download PDF
24. Collisions in magnetised plasmas
- Author
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Ghendrih Philippe, Cartier-Michaud Thomas, Dif-Pradalier Guilhem, Esteve Damien, Garbet Xavier, Grandgirard Virginie, Latu Guillaume, Norscini Claudia, and Sarazin Yanick
- Subjects
Applied mathematics. Quantitative methods ,T57-57.97 ,Mathematics ,QA1-939 - Abstract
Approximations for closing the kinetic equation for the one particle distribution function are calculated by using propagators. These provide the formal structure of the collision term in the Landau approximation. The method allows one to investigate the effect of inhomogeneities at the Debye scale and to analyse magnetised collisions, when the Larmor radius is smaller than the Debye length. This method also allows one developing a simple renormalisation scheme to derive the Lenard-Balescu collision operator.
- Published
- 2015
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25. Role of avalanche transport in competing drift wave and interchange turbulence
- Author
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Ghendrih, Philippe, primary, Dif-Pradalier, Guilhem, additional, Panico, Olivier, additional, Sarazin, Yanick, additional, Bufferand, Hugo, additional, Ciraolo, Guido, additional, Donnel, Peter, additional, Fedorczak, Nicolas, additional, Garbet, Xavier, additional, Grandgirard, Virginie, additional, Hennequin, Pascale, additional, Serre, Eric, additional, and Tamain, Patrick, additional
- Published
- 2022
- Full Text
- View/download PDF
26. Role of avalanche transport in competing drift wave and interchange turbulence
- Author
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Ghendrih, Philippe, Dif-Pradalier, Guilhem, Panico, Olivier, Sarazin, Yanick, Bufferand, Hugo, Ciraolo, Guido, Donnel, Peter, Fedorczak, Nicolas, Garbet, Xavier, Grandgirard, Virginie, Hennequin, Pascale, Serre, Eric, Tamain, Patrick, Institut de Recherche sur la Fusion par confinement Magnétique (IRFM), Commissariat à l'énergie atomique et aux énergies alternatives (CEA), École polytechnique (X), Centre National de la Recherche Scientifique (CNRS), and Aix Marseille Université (AMU)
- Subjects
History ,[PHYS.PHYS.PHYS-PLASM-PH]Physics [physics]/Physics [physics]/Plasma Physics [physics.plasm-ph] ,Computer Science Applications ,Education - Abstract
We complete the 2D 2-fields turbulence model previously used with an interchange-like instability by slightly modifying the parallel loss terms to drive drift wave instabilities. We show that the instability driven by temperature fluctuations of the sheath losses is identical to that of the drift wave turbulence. The linear analysis is performed and used to select control parameters that yield identical maximum growth rates for the interchange alone and drift wave alone instability. Combining the two instabilities doubles the maximum growth rate. The non-linear simulations are used to analyse the SOL width. The simulations allow one to identify a low field side SOL region where interchange and drift wave are unstable and a high field side SOL region where only the drift wave is unstable. The SOL profiles appear exponential in the region close to the source but depart from a simple exponential fall-off in the far SOL. The low field side SOL width is found to be larger in the interchange alone case, slightly smaller when both instabilities are present and finally narrower when only the drift waves. For the high field side SOL, without interchange, the drift wave SOL width is observed to be identical to that on the low field side and larger than that when both instabilities at play. The Sherwood dimensionless parameter, ratio of convective particle flux divided by the diffusive particle flux, is used to compare the efficiency of turbulent transport. The profiles of the Sherwood parameter for time and flux surface averaged transport indicate that turbulent transport is dominant close to the separatrix but is less effective towards the far SOL. The Sherwood parameter evolution, determined with the flux-surface averaged transport, indicates that outward avalanche transport with corrugations governs the case with interchange only. When combining the two instabilities, outward avalanche transport is less pronounced and inward avalanche transport is observed, reducing the overall turbulent transport efficiency. The avalanche transport with drift waves only compared to interchange only is found to be inhibited.
- Published
- 2022
27. Performance portable Vlasov code with C++ parallel algorithm
- Author
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Asahi, Yuuichi, primary, Padioleau, Thomas, additional, Latu, Guillaume, additional, Bigot, Julien, additional, Grandgirard, Virginie, additional, and Obrejan, Kevin, additional
- Published
- 2022
- Full Text
- View/download PDF
28. Transport barrier onset and edge turbulence shortfall in fusion plasmas
- Author
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Dif-Pradalier, Guilhem, primary, Ghendrih, Philippe, additional, Sarazin, Yanick, additional, Caschera, Elisabetta, additional, Clairet, Frédéric, additional, Camenen, Yann, additional, Donnel, Peter, additional, Garbet, Xavier, additional, Grandgirard, Virginie, additional, Munschy, Yann, additional, Vermare, Laure, additional, and Widmer, Fabien, additional
- Published
- 2022
- Full Text
- View/download PDF
29. Unraveling the competition/synergy between turbulence and 3D magnetic perturbations
- Author
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Varennes, Robin, Garbet, Xavier, Bourne, Emilie, Vermare, L., Sarazin, Yanick, Dif-Pradalier, Guilhem, Grandgirard, Virginie, Ghendrih, Philippe, Donnel, Peter, Peret, Mathieu, Obrejan, Kevin, Institut de Recherche sur la Fusion par confinement Magnétique (IRFM), Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Laboratoire de Physique des Plasmas (LPP), Observatoire de Paris, Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-École polytechnique (X)-Sorbonne Université (SU)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), and icard, valerie
- Subjects
[NLIN] Nonlinear Sciences [physics] ,[NLIN]Nonlinear Sciences [physics] - Abstract
International audience
- Published
- 2022
30. New advances to prepare GYSELA-X code for exascale global gyrokinetic plasma turbulence simulations: porting on GPU and ARM architectures
- Author
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Grandgirard, Virginie, Obrejan, Kevin, Midou, Dorian, Asahi, Y, Bernard, P-E, Bigot, J, Bourne, E, Dechard, J, Dif- Pradalier, G, Donnel, P, Garbet, X, Gueroudji, A, Hager, G, Murai, H, Ould-Ruis, Yacine, Padioleau, T, Nguyen, L, Peybernes, M, Sarazin, Y, Sato, M, Tsuji, M, Vezolle, P, Institut de Recherche sur la Fusion par confinement Magnétique (IRFM), Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Japan Atomic Energy Agency, Hewlett Packard Enterprise (Hewlett Packard) (HPE), Maison de la Simulation (MDLS), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Institut National de Recherche en Informatique et en Automatique (Inria)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), AS+ Groupe EOLEN, Friedrich-Alexander Universität Erlangen-Nürnberg (FAU), RIKEN Center for Computational Science [Kobe] (RIKEN CCS), RIKEN - Institute of Physical and Chemical Research [Japon] (RIKEN), Data Aware Large Scale Computing (DATAMOVE ), Inria Grenoble - Rhône-Alpes, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire d'Informatique de Grenoble (LIG), Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes (UGA)-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP ), Université Grenoble Alpes (UGA)-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes (UGA)-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP ), Université Grenoble Alpes (UGA), Ecole Polytechnique Fédérale de Lausanne (EPFL), the Association for Computing Machinery (ACM), and the Swiss National Supercomputing Centre (CSCS)
- Subjects
[NLIN]Nonlinear Sciences [physics] - Abstract
International audience
- Published
- 2022
31. Interface transport barriers in magnetized plasmas
- Author
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Norscini, Claudia, primary, Cartier-Michaud, Thomas, additional, Dif-Pradalier, Guilhem, additional, Garbet, Xavier, additional, Ghendrih, Philippe, additional, Grandgirard, Virginie, additional, and Sarazin, Yanick, additional
- Published
- 2022
- Full Text
- View/download PDF
32. Simulation Verification with PoPe
- Author
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Ghendrih, Philippe, Cartier-Michaud, Thomas, Grandgirard, Virginie, Serre, Eric, Institut de Recherche sur la Fusion par confinement Magnétique (IRFM), Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Laboratoire de Mécanique, Modélisation et Procédés Propres (M2P2), Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Centre National de la Recherche Scientifique (CNRS), and Aix Marseille Université (AMU)
- Subjects
[PHYS.PHYS.PHYS-COMP-PH]Physics [physics]/Physics [physics]/Computational Physics [physics.comp-ph] ,[PHYS.PHYS.PHYS-FLU-DYN]Physics [physics]/Physics [physics]/Fluid Dynamics [physics.flu-dyn] ,[PHYS.PHYS.PHYS-CLASS-PH]Physics [physics]/Physics [physics]/Classical Physics [physics.class-ph] ,[PHYS.PHYS.PHYS-PLASM-PH]Physics [physics]/Physics [physics]/Plasma Physics [physics.plasm-ph] ,[PHYS.MECA.MEFL]Physics [physics]/Mechanics [physics]/Fluid mechanics [physics.class-ph] ,[PHYS.COND.CM-SM]Physics [physics]/Condensed Matter [cond-mat]/Statistical Mechanics [cond-mat.stat-mech] - Abstract
We present the theoretical background of the PoPe and iPoPe verification scheme. The verification that is performed uses the output of actual simulations of production runs. With a small computing overhead it is possible to check that the problem that is solved numerically is consistent with the equations that are to be addressed. In fact, one shows that the numerical error determined by both procedures can be split into a part proportional to the existing operators of the equations, thus modifying their control parameters, completed by a residual error orthogonal to these operators. The accuracy of the numerical solution can be tested on the error as well as on the modification of the control parameters. To illustrate the method, the evolution equation of a simple mechanical system with two conjugate degrees of freedom is used as simulation test bed. Importantly, although dissipative, the trajectory equations evolve towards a chaotic attractor, a strange attractor, characterised by a positive Lyapunov exponent and therefore sensitivity to initial conditions. It is shown that the chaotic state cannot be verified with the standard Method of Manufactured Solution. We present different facets of the PoPe verification method applied to this test case. We show that the evaluation of the accuracy is case dependent for two reasons. First, the error that is generated depends on the values of the control parameter and not only on the numerical scheme. Second, the target accuracy will depend on the problem one wants to address. In a case characterised by bifurcations between different states, the accuracy is determined by the level of detail of the bifurcation phenomena one wants to achieve. A unique verification index is proposed to characterise the accuracy, and consequently the verification, of any given simulation in the production runs. This PoPe index then gives a level of confidence of each simulation. A PoPe index of zero characterises a situation with 100% error level. One finds that although the accuracy is poor the robust features of the solution can still be recovered. The maximum PoPe index is determined by machine precision, typically in the range of 12 to 14. As an illustration this PoPe index is used to choose between a high order integration scheme and a reduced order integration scheme that is less precise but requires less operations. For the chosen example the PoPe index indicates that the high order scheme leads to a reduction of computer resources up to a factor 4 at given accuracy.
- Published
- 2022
33. Gyroaverage operator for a polar mesh
- Author
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Steiner, Christophe, Mehrenberger, Michel, Crouseilles, Nicolas, Grandgirard, Virginie, Latu, Guillaume, and Rozar, Fabien
- Published
- 2015
- Full Text
- View/download PDF
34. Improving conservation properties of a 5D gyrokinetic semi-Lagrangian code
- Author
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Latu, Guillaume, Grandgirard, Virginie, Abiteboul, Jérémie, Crouseilles, Nicolas, Dif-Pradalier, Guilhem, Garbet, Xavier, Ghendrih, Philippe, Mehrenberger, Michel, Sarazin, Yanick, and Sonnendrücker, Eric
- Published
- 2014
- Full Text
- View/download PDF
35. Phase space structures in gyrokinetic simulations of fusion plasma turbulence
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Ghendrih, Philippe, Norscini, Claudia, Cartier-Michaud, Thomas, Dif-Pradalier, Guilhem, Abiteboul, Jérémie, Dong, Yue, Garbet, Xavier, Gürcan, Ozgür, Hennequin, Pascale, Grandgirard, Virginie, Latu, Guillaume, Morel, Pierre, Sarazin, Yanick, Storelli, Alexandre, and Vermare, Laure
- Published
- 2014
- Full Text
- View/download PDF
36. Fusion plasma turbulence described by modified sandpile dynamics
- Author
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Ghendrih, Philippe, Ciraolo, Guido, Dif-Pradalier, Guilhem, Norscini, Claudia, Sarazin, Yanick, Abiteboul, Jérémie, Cartier-Michaud, Thomas, Garbet, Xavier, Grandgirard, Virginie, and Strugarek, Antoine
- Published
- 2014
- Full Text
- View/download PDF
37. Optimization strategy for a performance portable Vlasov code
- Author
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Asahi, Yuuichi, Latu, Guillaume, Bigot, Julien, Grandgirard, Virginie, Center for Computational Science and e-Systems (CCSE), Japan Atomic Energy Agency [Ibaraki] (JAEA), Département d'Etudes des Combustibles (DEC), CEA-Direction des Energies (ex-Direction de l'Energie Nucléaire) (CEA-DES (ex-DEN)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Maison de la Simulation (MDLS), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Institut National de Recherche en Informatique et en Automatique (Inria)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Institut de Recherche sur la Fusion par confinement Magnétique (IRFM), and Commissariat à l'énergie atomique et aux énergies alternatives (CEA)
- Subjects
[INFO.INFO-PF]Computer Science [cs]/Performance [cs.PF] ,[INFO.INFO-SE]Computer Science [cs]/Software Engineering [cs.SE] ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 2021
- Full Text
- View/download PDF
38. Performance portable implementation of a kinetic plasma simulation mini-app
- Author
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Asahi, Yuuichi, Latu, Guillaume, Grandgirard, Virginie, and Bigot, Julien
- Abstract
Performance portability is considered to be an inevitable requirement in the exascale era. We explore a performance portable approach for fusion plasma turbulence simulation code employing kinetic model, namely the GYSELA code. For this purpose, we extract the key features of GYSELA such as the high dimensionality and the semi- Lagrangian scheme, and encapsulate them into a mini-application which solves the similar but a simplied Vlasov-Poisson system. We implement the mini-app with a mixed OpenACC/OpenMP and Kokkos implementation, where we suppress unnecessary duplications of code lines. For a reference case with the problem size of 1284, the Skylake (Kokkos), Nvidia Tesla P100 (OpenACC), and P100 (Kokkos) versions achieve an acceleration of 1.45, 12.95, and 17.83, respectively, with respect to the baseline OpenMP version on Intel Skylake. In addition to the performance portability, we discuss the code readability and productivity of each implementation. Based on our experience, Kokkos can oer a readable and productive code at the cost of initial porting eorts, which would be enormous for a large scale simulation code like GYSELA., SC19
- Published
- 2019
39. How to prepare the GYSELA-X code to future exascale edge-core simulations
- Author
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Grandgirard, Virginie, Asahi, Y, Bigot, J, Bourne, E, Dif-Pradalier, Guilhem, Donnel, P, Garbet, X, Ghendrih, Ph., Güçlü, Yaman, Kormann, K, Midou, D, Munschy, Y, Obrejan, K, Passeron, Ch, Varennes, R, Sarazin, Y, Institut de Recherche sur la Fusion par confinement Magnétique (IRFM), Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Japan Atomic Energy Agency, Maison de la Simulation (MDLS), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Institut National de Recherche en Informatique et en Automatique (Inria)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Ecole Polytechnique Fédérale de Lausanne (EPFL), Max-Planck-Institut für Plasmaphysik [Garching] (IPP), Association for Computing Machinery (ACM), and the Swiss National Supercomputing Centre (CSCS)
- Subjects
[PHYS]Physics [physics] ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 2021
40. Transport in Fusion Plasmas: Is the Tail Wagging the Dog?
- Author
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Dif-Pradalier, Guilhem, primary, Ghendrih, Philippe, additional, Sarazin, Yanick, additional, Caschera, Elisabetta, additional, Clairet, Frederic, additional, Camenen, Yann, additional, Garbet, Xavier, additional, Grandgirard, Virginie, additional, Munschy, Yann, additional, Vermare, Laure, additional, and Widmer, Fabien, additional
- Published
- 2021
- Full Text
- View/download PDF
41. Model order reduction approach to one-dimensional collisionless closure problem
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Gillot, Camille, Dif-Pradalier, Guilhem, Garbet, Xavier, Ghendrih, Philippe, Grandgirard, Virginie, Sarazin, Yanick, CEA Cadarache, Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Institut de Recherche sur la Fusion par confinement Magnétique (IRFM), and Sarazin, Yanick
- Subjects
[PHYS.PHYS.PHYS-PLASM-PH]Physics [physics]/Physics [physics]/Plasma Physics [physics.plasm-ph] ,[PHYS.PHYS.PHYS-PLASM-PH] Physics [physics]/Physics [physics]/Plasma Physics [physics.plasm-ph] - Published
- 2021
42. Key role of phase dynamics & diamagnetic drive on Reynolds stress in fusion plasma turbulence
- Author
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Sarazin, Y., Dif-Pradalier, Guilhem, Ghendrih, Ph., Garbet, X., Berger, A., Bigué, R., Bourne, Emilie, Grandgirard, Virginie, Obrejan, Kevin, Varennes, R., Vermare, L., icard, valerie, Implementation of activities described in the Roadmap to Fusion during Horizon 2020 through a Joint programme of the members of the EUROfusion consortium - EUROfusion - - H20202014-01-01 - 2018-12-31 - 633053 - VALID, Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Institut de Recherche sur la Fusion par confinement Magnétique (IRFM), Laboratoire de Physique des Plasmas (LPP), Observatoire de Paris, Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-École polytechnique (X)-Sorbonne Université (SU)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), and European Project: 633053,H2020,EURATOM-Adhoc-2014-20,EUROfusion(2014)
- Subjects
[PHYS]Physics [physics] ,[PHYS.PHYS.PHYS-PLASM-PH]Physics [physics]/Physics [physics]/Plasma Physics [physics.plasm-ph] ,[PHYS.PHYS.PHYS-PLASM-PH] Physics [physics]/Physics [physics]/Plasma Physics [physics.plasm-ph] ,ComputingMilieux_MISCELLANEOUS ,[PHYS] Physics [physics] - Abstract
International audience
- Published
- 2021
43. Formation of the radial electric field profile in WEST tokamak
- Author
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Vermare, Laure, Dif-Pradalier, Guilhem, Hennequin, Pascale, Gunn, James, Garbet, Xavier, Artaud, Jean-Francois, Gurcan, Ozgur, Bourdelle, Clarisse, Clairet, Frédéric, Fedorczak, Nicolas, Honoré, Cyrille, Morales, Jorge, Sarazin, Yanick, Grandgirard, Virginie, Varennes, Robin, Vezinet, Didier, Peret, Mathieu, Dumont, Rémi, Goniche, Marc, Maget, Patrick, icard, valerie, Implementation of activities described in the Roadmap to Fusion during Horizon 2020 through a Joint programme of the members of the EUROfusion consortium - EUROfusion - - H20202014-01-01 - 2018-12-31 - 633053 - VALID, Laboratoire de Physique des Plasmas (LPP), Observatoire de Paris, Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-École polytechnique (X)-Sorbonne Université (SU)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Institut de Recherche sur la Fusion par confinement Magnétique (IRFM), The WEST Team, and European Project: 633053,H2020,EURATOM-Adhoc-2014-20,EUROfusion(2014)
- Subjects
[PHYS]Physics [physics] ,[PHYS] Physics [physics] - Abstract
International audience; The shear of the radial electric field at the edge is widely accepted to be responsible for turbulence reductionin edge transport barriers and thought as a key ingredient of the improved confinement of H-mode plasmas.Nevertheless, a full understanding of how its profile builds up at the edge is still lacking. It can either beformulated as the result of a competition between several mechanisms that generate and damp flows or as theresult of a non-ambipolar particle flux, which enhances radial charge separation imposing a radial electric fieldprofile. Among possible mechanisms, one can think of turbulence generated flow via Reynolds stress, ion orbitlosses, toroidal magnetic ripple and the effect of neutral friction at the edge. Based on previous results obtainedon Tore Supra, the radial profile of the perpendicular flow expected in WEST can be separated in three spatialareas. Inside ρ = 0.8, the radial electric field is dominated by losses of thermal ions in the magnetic ripple while between 0.7 < ρ < 0.95, a competition between this latter and the generation of large scale flows byturbulence appears as a possible explanation of the measured poloidal asymmetry of the mean perpendicularvelocity. In addition, edge conditions such as contact points and parallel dynamics in the scrape-off-layer(SOL) influence the edge profiles beyond ρ = 0.9 (3). This contribution presents unexpected differences in theradial electric field profile observed in WEST between Lower Single Null (LSN) and Upper Single Null (USN)configurations and a study of the competition between specific mechanisms playing a role in the formationof this profile.
- Published
- 2021
44. Compressing the time series of five dimensional distribution function data from gyrokinetic simulation using principal component analysis
- Author
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Asahi, Yuuichi, Fujii, Keisuke, Manuel Heim, Dennis, Maeyama, Shinya, Garbet, Xavier, Grandgirard, Virginie, Sarazin, Yanick, Guilhem, Dif-Pradalier, Idomura, Yasuhiro, Yagi, Masatoshi, Yuuichi, Asahi, Yasuhiro, Idomura, Masatoshi, Yagi, Asahi, Yuuichi, Fujii, Keisuke, Manuel Heim, Dennis, Maeyama, Shinya, Garbet, Xavier, Grandgirard, Virginie, Sarazin, Yanick, Guilhem, Dif-Pradalier, Idomura, Yasuhiro, Yagi, Masatoshi, Yuuichi, Asahi, Yasuhiro, Idomura, and Masatoshi, Yagi
- Abstract
Phase space structures are extracted from the time series of five dimensional distribution function data computed by the flux-driven full-f gyrokinetic code GT5D. Principal component analysis (PCA) is applied to reduce the dimensionality and the size of the data. Phase space bases in ðu; vk;wÞ and the corresponding spatial coefficients (poloidal cross section) are constructed by PCA, where u; vk, and w, respectively, mean the toroidal angle, the parallel velocity, and the perpendicular velocity. It is shown that 83% of the variance of the original five dimensional distribution function can be expressed with 64 principal components, i.e., the compression of the degrees of freedom from 1:3 1012 to 1:4 109. One of the important findings—resulting from the detailed analysis of the contribution of each principal component to the energy flux—deals with avalanche events, which are found to be mostly driven by coherent structures in the phase space, indicating the key role of resonant particles. Another advantage of the proposed analysis is the decoupling of 6D (1D time and 5D phase space) data into the combinations of 3D data which are visible to the human eye.
- Published
- 2021
45. Scalable Quasineutral Solver for Gyrokinetic Simulation
- Author
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Latu, Guillaume, primary, Grandgirard, Virginie, additional, Crouseilles, Nicolas, additional, and Dif-Pradalier, Guilhem, additional
- Published
- 2012
- Full Text
- View/download PDF
46. Compressing the time series of five dimensional distribution function data from gyrokinetic simulation using principal component analysis
- Author
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Asahi, Yuuichi, primary, Fujii, Keisuke, additional, Heim, Dennis Manuel, additional, Maeyama, Shinya, additional, Garbet, Xavier, additional, Grandgirard, Virginie, additional, Sarazin, Yanick, additional, Dif-Pradalier, Guilhem, additional, Idomura, Yasuhiro, additional, and Yagi, Masatoshi, additional
- Published
- 2021
- Full Text
- View/download PDF
47. Overlapping communications in gyrokinetic codes on accelerator-based platforms
- Author
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Asahi, Yuuichi, Latu, Guillaume, Bigot, Julien, Maeyama, Shinya, Grandgirard, Virginie, Idomura, Yasuhiro, and Yuuichi, Asahi
- Abstract
Communication and computation overlapping techniques have been introduced in the five‐dimensional gyrokinetic codes GYSELA and GKV. In order to anticipate some of the exa‐scale requirements, these codes were ported to the modern accelerators, Xeon Phi KNL and Tesla P 100 GPU. On accelerators, a serial version of GYSELA on KNL and GKV on GPU are respectively 1.3× and 7.4× faster than those on a single Skylake processor (a single socket). For the scalability, we have measured GYSELA performance on Xeon Phi KNL from 16 to 512 KNLs (1024 to 32k cores) and GKV performance on Tesla P 100 GPU from 32 to 256 GPUs. In their parallel versions, transpose communication in semi‐Lagrangian solver in GYSELA or Convolution kernel in GKV turned out to be a main bottleneck. This indicates that in the exa‐scale, the network constraints would be critical. In order to mitigate the communication costs, the pipeline and task‐based overlapping techniques have been implemented in these codes. The GYSELA 2D advection solver has achieved a 33% to 92% speed up, and the GKV 2D convolution kernel has achieved a factor of 2 speed up with pipelining. The task‐based approach gives 11% to 82% performance gain in the derivative computation of the electrostatic potential in GYSELA. We have shown that the pipeline‐based approach is applicable with the presence of symmetry, while the task‐based approach can be applicable to more general situations.
- Published
- 2019
48. Accelerating a kinetic plasma simulation mini-app keeping performance portability
- Author
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Asahi, Yuuichi, Latu, Guillaume, Grandgirard, Virginie, and Bigot, Julien
- Abstract
プラズマ乱流の運動論モデルは、4次元以上の高次元性と各次元の低い解像度に特徴付けられる。これらのコードを、性能可搬性を維持しつつ、GPUによって加速するため、OpenACCとKokkosなどのフレームワークを用いて実装を行った。性能可搬性は、Nvidia P100、Nvidia V100、Marvell Thunder X2、Intel Xeon Goldなど最新のCPU、GPU上で検証した。発表では、OpenACCとKokkosの利点、欠点を性能、可搬性、抽象化などの観点から論じる。, 5th US-Japan JIFT Exascale Computing Collaboration
- Published
- 2019
49. Turbulence/Neoclassical interaction through poloidal convective cells
- Author
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Asahi, Yuuichi, Grandgirard, Virginie, Idomura, Yasuhiro, Latu, Guillaume, Sarazin, Yanick, Guilhem, Dif-Pradalier, Garbet, Xavier, and Donnel, Peter
- Abstract
乱流が非線型結合によって駆動するconvective cellモードに対し数値フィルタを適用する場合としない場合の比較を通じ、その輸送への影響評価を行う。フィルタの有無で乱流スペクトルなどに大きな変化は見られなかったが、フィルタはconvective cellモードを介して間接的に分布関数へ作用し、その分布関数の応答によって新古典熱輸送が変化する場合があることを明らかにした。, 10th Festival de Théorie
- Published
- 2019
50. Synergy of turbulent and neoclassical transport through poloidal convective cells
- Author
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Asahi, Yuuichi, primary, Grandgirard, Virginie, additional, Sarazin, Yanick, additional, Donnel, Peter, additional, Garbet, Xavier, additional, Idomura, Yasuhiro, additional, Dif-Pradalier, Guilhem, additional, and Latu, Guillaume, additional
- Published
- 2019
- Full Text
- View/download PDF
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