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Silicon (Si) treatment has been shown to reduce the toxicity and accumulation of lead (Pb) in many plants, including rice. The mechanisms responsible for this effect are poorly understood. We investigated the effects of Si treatment on Pb toxicity and accumulation in two rice mutants (lsi1and lsi2) defective in Si uptake and in their wild types. Si did not alleviate Pb-induced inhibition of root elongation in short-term experiments, but reduced Pb accumulation in wild types, but not in mutants, in long-term experiments. Pre-treatment with Si reduced Pb concentration in xylem sap and Pb accumulation in wild types but not in mutants. In split-root experiments, Si treatment reduced Pb accumulation but did not alter Pb localization in roots. Si treatment suppressed the expression of many genes encoding proteins that may participate in Pb uptake and transport in the wild type, but not in the lsi1mutant. These results indicate that Si accumulation in shoots is required to reduce Pb uptake in rice and that the effect is achieved via Si-induced suppression of genes encoding proteins involved in Pb uptake and/or transport.