43 results on '"Goldman, O"'
Search Results
2. SIGMORPHON-UniMorph 2022 Shared Task 0: Generalization and Typologically Diverse Morphological Inflection
- Author
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Kodner, J, Khalifa, S, Batsuren, K, Dolatian, H, Cotterell, R, Akkuş, F, Anastasopoulos, A, Andrushko, T, Arora, A, Bella, NAG, Budianskaya, E, Ghanggo Ate, Y, Goldman, O, Guriel, D, Guriel, S, Guriel-Agiashvili, S, Kieraś, W, Krizhanovsky, A, Krizhanovsky, N, Marchenko, I, Markowska, M, Mashkovtseva, P, Nepomniashchaya, M, Rodionova, D, Sheifer, K, Serova, A, Yemelina, A, Young, J, Vylomova, E, Kodner, J, Khalifa, S, Batsuren, K, Dolatian, H, Cotterell, R, Akkuş, F, Anastasopoulos, A, Andrushko, T, Arora, A, Bella, NAG, Budianskaya, E, Ghanggo Ate, Y, Goldman, O, Guriel, D, Guriel, S, Guriel-Agiashvili, S, Kieraś, W, Krizhanovsky, A, Krizhanovsky, N, Marchenko, I, Markowska, M, Mashkovtseva, P, Nepomniashchaya, M, Rodionova, D, Sheifer, K, Serova, A, Yemelina, A, Young, J, and Vylomova, E
- Abstract
The 2022 SIGMORPHON-UniMorph shared task on large scale morphological inflection generation included a wide range of typologically diverse languages: 33 languages from 11 top-level language families: Arabic (Modern Standard), Assamese, Braj, Chukchi, Eastern Armenian, Evenki, Georgian, Gothic, Gujarati, Hebrew, Hungarian, Itelmen, Karelian, Kazakh, Ket, Khalkha Mongolian, Kholosi, Korean, Lamahalot, Low German, Ludic, Magahi, Middle Low German, Old English, Old High German, Old Norse, Polish, Pomak, Slovak, Turkish, Upper Sorbian, Veps, and Xibe. We emphasize generalization along different dimensions this year by evaluating test items with unseen lemmas and unseen features separately under small and large training conditions. Across the six submitted systems and two baselines, the prediction of inflections with unseen features proved challenging, with average performance decreased substantially from last year. This was true even for languages for which the forms were in principle predictable, which suggests that further work is needed in designing systems that capture the various types of generalization required for the world's languages.
- Published
- 2022
3. SIGMORPHON 2021 Shared Task on Morphological Reinflection: Generalization Across Languages
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Pimentel, T, Ryskina, M, Mielke, SJ, Wu, S, Chodroff, E, Leonard, B, Nicolai, G, Ghanggo Ate, Y, Khalifa, S, Habash, N, El-Khaissi, C, Goldman, O, Gasser, M, Lane, W, Coler, M, Oncevay, A, Montoya Samame, JR, Silva Villegas, GC, Ek, A, Bernardy, J-P, Shcherbakov, A, Bayyr-ool, A, Sheifer, K, Ganieva, S, Plugaryov, M, Klyachko, E, Salehi, A, Krizhanovsky, A, Krizhanovsky, N, Vania, C, Ivanova, S, Salchak, A, Straughn, C, Liu, Z, Washington, JN, Ataman, D, Kieraś, W, Woliński, M, Suhardijanto, T, Stoehr, N, Nuriah, Z, Ratan, S, Tyers, FM, Ponti, EM, Aiton, G, Hatcher, RJ, Prud'hommeaux, E, Kumar, R, Hulden, M, Barta, B, Lakatos, D, Szolnok, G, Ács, J, Raj, M, Yarowsky, D, Cotterell, R, Ambridge, B, Vylomova, E, Pimentel, T, Ryskina, M, Mielke, SJ, Wu, S, Chodroff, E, Leonard, B, Nicolai, G, Ghanggo Ate, Y, Khalifa, S, Habash, N, El-Khaissi, C, Goldman, O, Gasser, M, Lane, W, Coler, M, Oncevay, A, Montoya Samame, JR, Silva Villegas, GC, Ek, A, Bernardy, J-P, Shcherbakov, A, Bayyr-ool, A, Sheifer, K, Ganieva, S, Plugaryov, M, Klyachko, E, Salehi, A, Krizhanovsky, A, Krizhanovsky, N, Vania, C, Ivanova, S, Salchak, A, Straughn, C, Liu, Z, Washington, JN, Ataman, D, Kieraś, W, Woliński, M, Suhardijanto, T, Stoehr, N, Nuriah, Z, Ratan, S, Tyers, FM, Ponti, EM, Aiton, G, Hatcher, RJ, Prud'hommeaux, E, Kumar, R, Hulden, M, Barta, B, Lakatos, D, Szolnok, G, Ács, J, Raj, M, Yarowsky, D, Cotterell, R, Ambridge, B, and Vylomova, E
- Published
- 2021
4. Angiogenesis in Systemic Sclerosis: Impaired Expression of Vascular Endothelial Growth Factor Receptor 1 in Endothelial Progenitor–Derived Cells Under Hypoxic Conditions
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Avouac, J., Wipff, J., Goldman, O., Ruiz, B., Couraud, P. O., Chiocchia, G., Kahan, A., Boileau, C., Uzan, G., and Allanore, Y.
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- 2008
5. Genomic organisation of the UDP-N-acetylglucosamine-1-phosphotransferase gamma subunit (GNPTAG) and its mutations in mucolipidosis III
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Raas-Rothschild, A, Bargal, R, Goldman, O, Ben-Asher, E, Groener, J E M, Toutain, A, Stemmer, E, Ben-Neriah, Z, Flusser, H, Beemer, F A, Penttinen, M, Olender, T, Rein, A J J T, Bach, G, and Zeigler, M
- Published
- 2004
6. CEMENT FOR CAST IRON PIPE JOINTS
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Goldman, O. G.
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- 1929
7. The space of $$\mathfrak{p}$$ -adic normsnorms
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Goldman, O. and Iwahori, N.
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- 1963
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8. Revisiting China's Non-Interference Policy towards Intrastate Wars
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Chaziza, M., primary and Goldman, O. S., additional
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- 2014
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9. Significance of residual leukaemia transcripts after bone marrow transplant for CML.
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Hughes, T, Martiat, Philippe, Morgan, G, Sawyers, C, Witte, O N, Goldman, O N, Hughes, T, Martiat, Philippe, Morgan, G, Sawyers, C, Witte, O N, and Goldman, O N
- Abstract
Comment, Letter, info:eu-repo/semantics/published
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- 1990
10. Attaching a Winchester Hard Disk to the S-100 Bus
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Goldman, O.
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Winchester Disk ,Hard Disk Drive ,Buses ,Interface - Published
- 1983
11. Application of the nonstationary state of a catalyst surface for gas purification from toxic impurities
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Noskov, A., Bobrova, L., Bunimovich, G., Goldman, O., Zagoruiko, A., and Matros, Y.
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- 1996
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12. The space of <img src="/fulltext-image.asp?format=htmlnonpaginated&src=U517870843811214_html\11511_2006_Article_BF02391811_TeX2GIFIE1.gif" border="0" alt=" $$\mathfrak{p}$$ " />-adic normsnorms
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Goldman, O. and Iwahori, N.
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- 1963
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13. The importance of voluntary associations for guerrilla movements
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Goldman, Ogen
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GUERRILLA WARFARE - Methodology ,GUERRILLA WARFARE - Organization ,RADICAL MOVEMENTS - Study and Teaching - Abstract
tab bibliog
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- 2013
14. Mechanical features of 561 subscriber carrier
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Ross, J. E., primary and Goldman, O. H., additional
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- 1958
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15. Discussion: “Elements of Graphical Solution of Water-Hammer Problems in Centrifugal-Pump Systems” (Stepanoff, A. J., 1949, Trans. ASME, 71, pp. 515–527)
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Goldman, O. G., primary
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- 1949
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16. Early Infiltration of Innate Immune Cells to the Liver Depletes HNF4α and Promotes Extrahepatic Carcinogenesis.
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Goldman O, Adler LN, Hajaj E, Croese T, Darzi N, Galai S, Tishler H, Ariav Y, Lavie D, Fellus-Alyagor L, Oren R, Kuznetsov Y, David E, Jaschek R, Stossel C, Singer O, Malitsky S, Barak R, Seger R, Erez N, Amit I, Tanay A, Saada A, Golan T, Rubinek T, Sang Lee J, Ben-Shachar S, Wolf I, and Erez A
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- Humans, Carcinogenesis pathology, Hepatocytes, Immunity, Innate, Tumor Microenvironment, Liver metabolism, Pancreatic Neoplasms pathology
- Abstract
Multiple studies have identified metabolic changes within the tumor and its microenvironment during carcinogenesis. Yet, the mechanisms by which tumors affect the host metabolism are unclear. We find that systemic inflammation induced by cancer leads to liver infiltration of myeloid cells at early extrahepatic carcinogenesis. The infiltrating immune cells via IL6-pSTAT3 immune-hepatocyte cross-talk cause the depletion of a master metabolic regulator, HNF4α, consequently leading to systemic metabolic changes that promote breast and pancreatic cancer proliferation and a worse outcome. Preserving HNF4α levels maintains liver metabolism and restricts carcinogenesis. Standard liver biochemical tests can identify early metabolic changes and predict patients' outcomes and weight loss. Thus, the tumor induces early metabolic changes in its macroenvironment with diagnostic and potentially therapeutic implications for the host., Significance: Cancer growth requires a permanent nutrient supply starting from early disease stages. We find that the tumor extends its effect to the host's liver to obtain nutrients and rewires the systemic and tissue-specific metabolism early during carcinogenesis. Preserving liver metabolism restricts tumor growth and improves cancer outcomes. This article is highlighted in the In This Issue feature, p. 1501., (©2023 The Authors; Published by the American Association for Cancer Research.)
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- 2023
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17. Project Save Lives: A Hospital-Based Peer Overdose Intervention.
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Salmo V, Bodin R, Pomm RM, Klein C, Prieto DE, Goldman O, Jones KWW, and Nichols AC
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- Humans, Naloxone therapeutic use, Hospitals, Drug Overdose prevention & control, Drug Overdose drug therapy
- Abstract
Competing Interests: The authors declare no conflicts of interest.
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- 2023
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18. The specifics of interaction with patients and their relatives as a factor of emotional condition of oncologists.
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Dreneva AA, Pravednikov AV, Chistyakova DP, Goldman OE, and Bogdan IV
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- Emotions, Humans, Surveys and Questionnaires, Burnout, Professional epidemiology, Neoplasms therapy, Oncologists psychology
- Abstract
The paper considers issue of professional burnout of oncologists through the prism of their relationship with patients and their close relatives. The study was carried out using direct and online sociological survey method. The sample included 534 specialists being in constant contact with cancer patients. The results revealed pronounced prevalence of such main burnout domains as emotional exhaustion (55%), depersonalization (19%), reduction of professional achievements (22%). The most common methods of dealing with stress were recreation, sports, communication with immediate relatives, hobbies, walking (7-20%), 4% used alcohol. The high frequency of patient requests to oncologist for psychological support (88%) was established as well as difficulties in communication between doctor and patient because available communication skills are not always sufficient for 76% of oncologists. The majority of respondents support idea of patient need for psychological support and its effectiveness for their treatment and physical and emotional conditions. The similar trends were found in case of close relatives of patients. At the same time some oncologists expressed negative, stigmatizing attitudes towards patients in need of psychological support that requires additional educational work. In oncologists, even when need for psychological support is expressed by patient, willingness to seek it is low: a third of respondents are "rather not ready" to see psychologist even if they had this opportunity. The results meet data of other researches data and reveal that interaction with patients and their relatives is one of the main factors affecting the emotional state of oncologists. Based on study results as well as on publication analysis, comprehensive solution was proposed to implement psychological oncologic service in Russia, which, on one hand, will allow to provide support to cancer patients and their relatives, and on the other hand, will conduct specific training for oncologists concerning skills of psychologically safe communication with patients and coping with negative experiences.
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- 2022
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19. Stratifying individuals into non-alcoholic fatty liver disease risk levels using time series machine learning models.
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Ben-Assuli O, Jacobi A, Goldman O, Shenhar-Tsarfaty S, Rogowski O, Zeltser D, Shapira I, Berliner S, and Zelber-Sagi S
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- Humans, Liver, Liver Cirrhosis, Machine Learning, Risk Assessment, Time Factors, Non-alcoholic Fatty Liver Disease complications, Non-alcoholic Fatty Liver Disease diagnosis, Non-alcoholic Fatty Liver Disease epidemiology
- Abstract
Non-alcoholic fatty liver disease (NAFLD) affects 25% of the population worldwide, and its prevalence is anticipated to increase globally. While most NAFLD patients are asymptomatic, NAFLD may progress to fibrosis, cirrhosis, cardiovascular disease, and diabetes. Research reports, with daunting results, show the challenge that NAFLD's burden causes to global population health. The current process for identifying fibrosis risk levels is inefficient, expensive, does not cover all potential populations, and does not identify the risk in time. Instead of invasive liver biopsies, we implemented a non-invasive fibrosis assessment process calculated from clinical data (accessed via EMRs/EHRs). We stratified patients' risks for fibrosis from 2007 to 2017 by modeling the risk in 5579 individuals. The process involved time-series machine learning models (Hidden Markov Models and Group-Based Trajectory Models) profiled fibrosis risk by modeling patients' latent medical status resulted in three groups. The high-risk group had abnormal lab test values and a higher prevalence of chronic conditions. This study can help overcome the inefficient, traditional process of detecting fibrosis via biopsies (that are also medically unfeasible due to their invasive nature, the medical resources involved, and costs) at early stages. Thus longitudinal risk assessment may be used to make population-specific medical recommendations targeting early detection of high risk patients, to avoid the development of fibrosis disease and its complications as well as decrease healthcare costs., (Copyright © 2022 Elsevier Inc. All rights reserved.)
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- 2022
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20. Improvement in the Prediction of Coronary Heart Disease Risk by Using Artificial Neural Networks.
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Goldman O, Raphaeli O, Goldman E, and Leshno M
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- Humans, Neural Networks, Computer, ROC Curve, Risk Assessment, Risk Factors, Coronary Disease diagnosis, Coronary Disease epidemiology
- Abstract
Background and Objectives: Cardiovascular diseases, such as coronary heart disease (CHD), are the main cause of mortality and morbidity worldwide. Although CHD cannot be entirely predicted by classic risk factors, it is preventable. Therefore, predicting CHD risk is crucial to clinical cardiology research, and the development of innovative methods for predicting CHD risk is of great practical interest. The Framingham risk score (FRS) is one of the most frequently implemented risk models. However, recent advances in the field of analytics may enhance the prediction of CHD risk beyond the FRS. Here, we propose a model based on an artificial neural network (ANN) for predicting CHD risk with respect to the Framingham Heart Study (FHS) dataset. The performance of this model was compared to that of the FRS., Methods: A sample of 3066 subjects from the FHS offspring cohort was subjected to an ANN. A multilayer perceptron ANN architecture was used and the lift, gains, receiver operating characteristic (ROC), and precision-recall predicted by the ANN were compared with those of the FRS., Results: The lift and gain curves of the ANN model outperformed those of the FRS model in terms of top percentiles. The ROC curve showed that, for higher risk scores, the ANN model had higher sensitivity and higher specificity than those of the FRS model, although its area under the curve (AUC) was lower. For the precision-recall measures, the ANN generated significantly better results than the FRS with a higher AUC., Conclusions: The findings suggest that the ANN model is a promising approach for predicting CHD risk and a good screening procedure to identify high-risk subjects., Competing Interests: The authors declare no conflicts of interest., (Copyright © 2021 Wolters Kluwer Health, Inc. All rights reserved.)
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- 2021
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21. Principles and practice for SARS-CoV-2 decontamination of N95 masks with UV-C.
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Huber T, Goldman O, Epstein AE, Stella G, and Sakmar TP
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- Decontamination, Equipment Reuse, Humans, N95 Respirators, COVID-19, SARS-CoV-2
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A mainstay of personal protective equipment during the coronavirus disease 2019 pandemic is the N95 filtering facepiece respirator. N95 respirators are commonly used to protect healthcare workers from respiratory pathogens, including the novel coronavirus severe acute respiratory syndrome coronavirus 2, and are increasingly employed by other frontline workers and the general public. Under routine circumstances, these masks are disposable, single-use items, but extended use and reuse practices have been broadly enacted to alleviate critical supply shortages during the coronavirus disease 2019 pandemic. Although extended-time single use presents a low risk of pathogen transfer, repeated donning and doffing of potentially contaminated masks presents increased risk of pathogen transfer. Therefore, efficient and safe decontamination methods for N95 masks are needed to reduce the risk of reuse and mitigate local supply shortages. Here, we review the available literature concerning use of germicidal ultraviolet-C (UV-C) light to decontaminate N95 masks. We propose a practical method for repeated point-of-use decontamination using commercially available UV-C cross-linker boxes from molecular biology laboratories to expose each side of the mask to 800-1200 mJ/cm
2 of UV-C. We measure the dose that penetrated to the interior of the respirators and model the potential germicidal action on coronaviruses. Our experimental results, in combination with modeled data, suggest that such a UV-C treatment cycle should induce a >3-log-order reduction in viral bioburden on the surface of the respirators and a 2-log-order reduction throughout the interior. We find that a dose 50-fold greater does not impair filtration or fit of 3M 8210 N95 masks, indicating that decontamination can be performed repeatedly. As such, UV-C germicidal irradiation is a practical strategy for small-scale point-of-use decontamination of N95s., (Copyright © 2021. Published by Elsevier Inc.)- Published
- 2021
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22. Non-alcoholic Fatty Liver and Liver Fibrosis Predictive Analytics: Risk Prediction and Machine Learning Techniques for Improved Preventive Medicine.
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Goldman O, Ben-Assuli O, Rogowski O, Zeltser D, Shapira I, Berliner S, Zelber-Sagi S, and Shenhar-Tsarfaty S
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- Humans, Liver Cirrhosis epidemiology, Machine Learning, Prospective Studies, Risk Factors, Cardiovascular Diseases, Non-alcoholic Fatty Liver Disease epidemiology, Non-alcoholic Fatty Liver Disease prevention & control
- Abstract
Non-alcoholic fatty liver disease (NAFLD) is the most common liver disease worldwide, with a prevalence of 20%-30% in the general population. NAFLD is associated with increased risk of cardiovascular disease and may progress to cirrhosis with time. The purpose of this study was to predict the risks associated with NAFLD and advanced fibrosis on the Fatty Liver Index (FLI) and the 'NAFLD fibrosis 4' calculator (FIB-4), to enable physicians to make more optimal preventive medical decisions. A prospective cohort of apparently healthy volunteers from the Tel Aviv Medical Center Inflammation Survey (TAMCIS), admitted for their routine annual health check-up. Data from the TAMCIS database were subjected to machine learning classification models to predict individual risk after extensive data preparation that included the computation of independent variables over several time points. After incorporating the time covariates and other key variables, this technique outperformed the predictive power of current popular methods (an improvement in AUC above 0.82). New powerful factors were identified during the predictive process. The findings can be used for risk stratification and in planning future preventive strategies based on lifestyle modifications and medical treatment to reduce the disease burden. Interventions to prevent chronic disease can substantially reduce medical complications and the costs of the disease. The findings highlight the value of predictive analytic tools in health care environments. NAFLD constitutes a growing burden on the health system; thus, identification of the factors related to its incidence can make a strong contribution to preventive medicine.
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- 2021
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23. Targeting purine synthesis in ASS1-expressing tumors enhances the response to immune checkpoint inhibitors.
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Keshet R, Lee JS, Adler L, Iraqi M, Ariav Y, Lim LQJ, Lerner S, Rabinovich S, Oren R, Katzir R, Weiss Tishler H, Stettner N, Goldman O, Landesman H, Galai S, Kuperman Y, Kuznetsov Y, Brandis A, Mehlman T, Malitsky S, Itkin M, Koehler SE, Zhao Y, Talsania K, Shen TW, Peled N, Ulitsky I, Porgador A, Ruppin E, and Erez A
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- Animals, CD8-Positive T-Lymphocytes metabolism, Cell Line, Tumor, Female, Humans, Immune Checkpoint Inhibitors, Mice, Purines, Argininosuccinate Synthase metabolism, Breast Neoplasms
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Argininosuccinate synthase (ASS1) downregulation in different tumors has been shown to support cell proliferation and yet, in several common cancer subsets ASS1 expression associates with poor patient prognosis. Here we demonstrate that ASS1 expression under glucose deprivation is induced by c-MYC, providing survival benefit by increasing nitric oxide synthesis and activating the gluconeogenic enzymes pyruvate carboxylase and phosphoenolpyruvate carboxykinase by S-nitrosylation. The resulting increased flux through gluconeogenesis enhances serine, glycine and subsequently purine synthesis. Notably, high ASS1-expressing breast cancer mice do not respond to immune checkpoint inhibitors and patients with breast cancer with high ASS1 have more metastases. We further find that inhibiting purine synthesis increases pyrimidine to purine ratio, elevates expression of the immunoproteasome and significantly enhances the response of autologous primary CD8
+ T cells to anti-PD-1. These results suggest that treating patients with high-ASS1 cancers with purine synthesis inhibition is beneficial and may also sensitize them to immune checkpoint inhibition therapy., (© 2020. The Author(s), under exclusive licence to Springer Nature America, Inc.)- Published
- 2020
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24. Lung Based Engineered Micro-Pancreas Sustains Human Beta Cell Survival and Functionality.
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Goldman O, Puchinsky D, Durlacher K, Sancho R, Ludwig B, Kugelmeier P, Heller C, Kunicher N, Bornstein SR, and Treves AJ
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- Animals, Cell Survival, Drug Discovery, Extracellular Matrix chemistry, Humans, Insulin metabolism, Insulin-Secreting Cells cytology, Mass Spectrometry, Pancreas growth & development, Swine, Tissue Engineering instrumentation, Insulin-Secreting Cells metabolism, Lung chemistry, Pancreas metabolism, Tissue Engineering methods, Tissue Scaffolds chemistry
- Abstract
The whole world has been affected by a dramatically increasing prevalence of diabetes. Today, the etiology of both type 1 and type 2 diabetes is thought to revolve around the dysfunction of β-cells, the insulin producing cells of the body. Within the pharmaceutical industry, the evaluation of new drugs for diabetes treatment is mostly done using cell lines or rodent islets and depends solely on the assessment of static insulin secretion. However, the use of cell lines or rodent islets is limiting lack of similarity of the human islet cells, leading to a constrain of the predictive value regarding the clinical potential of newly developed drugs. To overcome this issue, we developed an Engineered Micro-Pancreas as a unique platform for drug discovery. The Engineered Micro Pancreas is composed of (i) an organ-derived micro-scaffold, specifically a decellularized porcine lung-derived micro-scaffold and (ii) cadaveric islets seeded thereon. The Engineered Micro Pancreas remained viable and maintained insulin secretion in vitro for up to three months. The quantities of insulin were comparable to those secreted by freshly isolated human islets and therefore hold the potential for real-time and metabolic physiology mimicking drug screening., Competing Interests: The authors declare that they have no conflict of interest., (© Georg Thieme Verlag KG Stuttgart · New York.)
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- 2019
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25. Author Correction: Genome-wide SWAp-Tag yeast libraries for proteome exploration.
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Weill U, Yofe I, Sass E, Stynen B, Davidi D, Natarajan J, Ben-Menachem R, Avihou Z, Goldman O, Harpaz N, Chuartzman S, Kniazev K, Knoblach B, Laborenz J, Boos F, Kowarzyk J, Ben-Dor S, Zalckvar E, Herrmann JM, Rachubinski RA, Pines O, Rapaport D, Michnick SW, Levy ED, and Schuldiner M
- Abstract
The version of Supplementary Table 1 originally published online with this article contained incorrect localization annotations for one plate. This error has been corrected in the online Supplementary Information.
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- 2019
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26. Acid-Induced Downregulation of ASS1 Contributes to the Maintenance of Intracellular pH in Cancer.
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Silberman A, Goldman O, Boukobza Assayag O, Jacob A, Rabinovich S, Adler L, Lee JS, Keshet R, Sarver A, Frug J, Stettner N, Galai S, Persi E, Halpern KB, Zaltsman-Amir Y, Pode-Shakked B, Eilam R, Anikster Y, Nagamani SCS, Ulitsky I, Ruppin E, and Erez A
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- Adolescent, Adult, Animals, Bone Neoplasms metabolism, Bone Neoplasms pathology, Cell Hypoxia physiology, Cell Line, Tumor, Cell Movement physiology, Child, Down-Regulation, Gene Expression Profiling, Glutamine metabolism, Humans, Hydrogen-Ion Concentration, Male, Melanoma, Experimental metabolism, Melanoma, Experimental pathology, Mice, Mice, Inbred C57BL, Mice, SCID, Neoplasms enzymology, Neoplasms pathology, Osteosarcoma metabolism, Osteosarcoma pathology, Oxidation-Reduction, Young Adult, Argininosuccinate Synthase metabolism, Neoplasms metabolism
- Abstract
Downregulation of the urea cycle enzyme argininosuccinate synthase (ASS1) by either promoter methylation or by HIF1α is associated with increased metastasis and poor prognosis in multiple cancers. We have previously shown that in normoxic conditions, ASS1 downregulation facilitates cancer cell proliferation by increasing aspartate availability for pyrimidine synthesis by the enzyme complex CAD. Here we report that in hypoxia, ASS1 expression in cancerous cells is downregulated further by HIF1α-mediated induction of miR-224-5p, making the cells more invasive and dependent on upstream substrates of ASS1 for survival. ASS1 was downregulated under acidic conditions, and ASS1-depleted cancer cells maintained a higher intracellular pH (pHi), depended less on extracellular glutamine, and displayed higher glutathione levels. Depletion of substrates of urea cycle enzymes in ASS1-deficient cancers decreased cancer cell survival. Thus, ASS1 levels in cancer are differentially regulated in various environmental conditions to metabolically benefit cancer progression. Understanding these alterations may help uncover specific context-dependent cancer vulnerabilities that may be targeted for therapeutic purposes. SIGNIFICANCE: Cancer cells in an acidic or hypoxic environment downregulate the expression of the urea cycle enzyme ASS1, which provides them with a redox and pH advantage, resulting in better survival. Graphical Abstract: http://cancerres.aacrjournals.org/content/canres/79/3/518/F1.large.jpg., (©2018 American Association for Cancer Research.)
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- 2019
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27. Genome-wide SWAp-Tag yeast libraries for proteome exploration.
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Weill U, Yofe I, Sass E, Stynen B, Davidi D, Natarajan J, Ben-Menachem R, Avihou Z, Goldman O, Harpaz N, Chuartzman S, Kniazev K, Knoblach B, Laborenz J, Boos F, Kowarzyk J, Ben-Dor S, Zalckvar E, Herrmann JM, Rachubinski RA, Pines O, Rapaport D, Michnick SW, Levy ED, and Schuldiner M
- Subjects
- Genetic Complementation Test, Green Fluorescent Proteins genetics, Green Fluorescent Proteins metabolism, Mitochondrial Proteins genetics, Mitochondrial Proteins metabolism, Nuclear Proteins genetics, Nuclear Proteins metabolism, Promoter Regions, Genetic, Protein Interaction Mapping, Proteome metabolism, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Ribonucleoproteins, Small Nucleolar genetics, Ribonucleoproteins, Small Nucleolar metabolism, Saccharomyces cerevisiae metabolism, Saccharomyces cerevisiae Proteins genetics, Saccharomyces cerevisiae Proteins metabolism, Sequence Tagged Sites, Genome, Fungal, Genomic Library, Proteome genetics, Saccharomyces cerevisiae genetics
- Abstract
Yeast libraries revolutionized the systematic study of cell biology. To extensively increase the number of such libraries, we used our previously devised SWAp-Tag (SWAT) approach to construct a genome-wide library of ~5,500 strains carrying the SWAT NOP1promoter-GFP module at the N terminus of proteins. In addition, we created six diverse libraries that restored the native regulation, created an overexpression library with a Cherry tag, or enabled protein complementation assays from two fragments of an enzyme or fluorophore. We developed methods utilizing these SWAT collections to systematically characterize the yeast proteome for protein abundance, localization, topology, and interactions.
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- 2018
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28. An Interaction between Serotonin Receptor Signaling and Dopamine Enhances Goal-Directed Vigor and Persistence in Mice.
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Bailey MR, Goldman O, Bello EP, Chohan MO, Jeong N, Winiger V, Chun E, Schipani E, Kalmbach A, Cheer JF, Balsam PD, and Simpson EH
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- Animals, Apathy drug effects, Apathy physiology, Brain physiology, Female, Male, Mice, Mice, Inbred C57BL, Motivation drug effects, Motivation physiology, Reward, Signal Transduction drug effects, Signal Transduction physiology, Aminopyridines pharmacology, Brain drug effects, Dopamine metabolism, Indoles pharmacology, Receptor, Serotonin, 5-HT2C drug effects, Receptor, Serotonin, 5-HT2C metabolism
- Abstract
The functionally selective 5-HT2C receptor ligand SB242084 can increase motivation and have rapid onset anti-depressant-like effects. We sought to identify the specific behavioral effects of SB242084 treatment and elucidate the mechanism in female and male mice. Using a quantitative behavioral approach, we determined that SB242084 increases the vigor and persistence of goal-directed activity across different types of physical work, particularly when work requirements are demanding. We found this influence of SB242084 on effort, rather than reward to be reflected in striatal DA measured during behavior. Using in vivo fast scan cyclic voltammetry, we found that SB242084 has no effect on reward-related phasic DA release in the NAc. Using in vivo microdialysis to measure tonic changes in extracellular DA, we also found no changes in the NAc. In contrast, SB242084 treatment increases extracellular DA in the dorsomedial striatum, an area that plays a key role in response vigor. These findings have several implications. At the behavioral level, this work shows that the capacity to work in demanding situations can be increased, without a generalized increase in motor activity or reward value. At the circuit level, we identified a pathway restricted potentiation of DA release and showed that this was the reason for the increased response vigor. At the cellular level, we show that a specific serotonin receptor cross talks to the DA system. Together, this information provides promise for the development of treatments for apathy, a serious clinical condition that can afflict patients with psychiatric and neurological disorders. SIGNIFICANCE STATEMENT Motivated behaviors are modulated by reward value, effort demands, and cost-benefit computations. This information drives the decision to act, which action to select, and the intensity with which the selected action is performed. Because these behavioral processes are all regulated by DA signaling, it is very difficult to influence selected aspects of motivated behavior without affecting others. Here we identify a pharmacological treatment that increases the vigor and persistence of responding in mice, without increasing generalized activity or changing reactions to rewards. We show that the 5-HT2C-selective ligand boosts motivation by potentiating activity-dependent DA release in the dorsomedial striatum. These results reveal a novel strategy for treating patients with motivational deficits, avolition, or apathy., (Copyright © 2018 the authors 0270-6474/18/382149-14$15.00/0.)
- Published
- 2018
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29. Functional Blood Progenitor Markers in Developing Human Liver Progenitors.
- Author
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Goldman O, Cohen I, and Gouon-Evans V
- Subjects
- AC133 Antigen metabolism, Animals, Antigens, CD34 metabolism, Cell Differentiation, Embryonic Stem Cells cytology, Embryonic Stem Cells metabolism, GATA2 Transcription Factor metabolism, Hematopoietic Stem Cells metabolism, Hepatocytes cytology, Hepatocytes metabolism, Liver embryology, Mice, Reproducibility of Results, Biomarkers metabolism, Hematopoietic Stem Cells cytology, Liver cytology
- Abstract
In the early fetal liver, hematopoietic progenitors expand and mature together with hepatoblasts, the liver progenitors of hepatocytes and cholangiocytes. Previous analyses of human fetal livers indicated that both progenitors support each other's lineage maturation and curiously share some cell surface markers including CD34 and CD133. Using the human embryonic stem cell (hESC) system, we demonstrate that virtually all hESC-derived hepatoblast-like cells (Hep cells) transition through a progenitor stage expressing CD34 and CD133 as well as GATA2, an additional hematopoietic marker that has not previously been associated with human hepatoblast development. Dynamic expression patterns for CD34, CD133, and GATA2 in hepatoblasts were validated in human fetal livers collected from the first and second trimesters of gestation. Knockdown experiments demonstrate that each gene also functions to regulate hepatic fate mostly in a cell-autonomous fashion, revealing unprecedented roles of fetal hematopoietic progenitor markers in human liver progenitors., (Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2016
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- View/download PDF
30. The mesenchymal transcription factor SNAI-1 instructs human liver specification.
- Author
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Goldman O, Valdes VJ, Ezhkova E, and Gouon-Evans V
- Subjects
- Animals, Cadherins genetics, Cadherins metabolism, Cell Differentiation, Chromatin Immunoprecipitation, Epithelial Cell Adhesion Molecule genetics, Epithelial Cell Adhesion Molecule metabolism, Fetus cytology, Hepatocytes cytology, Humans, Liver cytology, Liver metabolism, Mice, Microscopy, Fluorescence, RNA Interference, RNA, Small Interfering metabolism, Real-Time Polymerase Chain Reaction, Snail Family Transcription Factors antagonists & inhibitors, Snail Family Transcription Factors genetics, Vimentin genetics, Vimentin metabolism, Hepatocytes metabolism, Snail Family Transcription Factors metabolism
- Abstract
Epithelial-mesenchymal transition (EMT) and the mesenchymal-epithelial transition (MET) are processes required for embryo organogenesis. Liver develops from the epithelial foregut endoderm from which the liver progenitors, hepatoblasts, are specified. The migrating hepatoblasts acquire a mesenchymal phenotype to form the liver bud. In mid-gestation, hepatoblasts mature into epithelial structures: the hepatocyte cords and biliary ducts. While EMT has been associated with liver bud formation, nothing is known about its contribution to hepatic specification. We previously established an efficient protocol from human embryonic stem cells (hESC) to generate hepatic cells (Hep cells) resembling the hepatoblasts expressing alpha-fetoprotein (AFP) and albumin (ALB). Here we show that Hep cells express both epithelial (EpCAM and E-cadherin) and mesenchymal (vimentin and SNAI-1) markers. Similar epithelial and mesenchymal hepatoblasts were identified in human and mouse fetal livers, suggesting a conserved interspecies phenotype. Knock-down experiments demonstrated the importance of SNAI-1 in Hep cell hepatic specification. Moreover, ChIP assays revealed direct binding of SNAI-1 in the promoters of AFP and ALB genes consistent with its transcriptional activator function in hepatic specification. Altogether, our hESC-derived Hep cell cultures reveal the dual mesenchymal and epithelial phenotype of hepatoblast-like cells and support the unexpected transcriptional activator role of SNAI-1 in hepatic specification., (Copyright © 2016 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2016
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31. Human Pluripotent Stem Cells: Myths and Future Realities for Liver Cell Therapy.
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Goldman O and Gouon-Evans V
- Subjects
- Hepatocytes cytology, Humans, Liver Diseases therapy, Cell- and Tissue-Based Therapy, Liver cytology, Pluripotent Stem Cells cytology
- Abstract
The severe shortage of organ donors for treating patients with liver disease has prompted in vitro efforts to produce the main functional cells of the liver: hepatocyte-like cells (Hep cells). We consider the key challenges posed by various stem cell technologies and liver pathologies for developing clinically useful Hep cells., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
32. One library to make them all: streamlining the creation of yeast libraries via a SWAp-Tag strategy.
- Author
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Yofe I, Weill U, Meurer M, Chuartzman S, Zalckvar E, Goldman O, Ben-Dor S, Schütze C, Wiedemann N, Knop M, Khmelinskii A, and Schuldiner M
- Subjects
- Blotting, Western, Cell Biology, Green Fluorescent Proteins genetics, Membrane Proteins genetics, Microscopy, Fluorescence, Peroxisomes metabolism, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae growth & development, Saccharomyces cerevisiae Proteins genetics, Subcellular Fractions, Gene Library, Green Fluorescent Proteins metabolism, Image Processing, Computer-Assisted methods, Membrane Proteins metabolism, Saccharomyces cerevisiae metabolism, Saccharomyces cerevisiae Proteins metabolism
- Abstract
The yeast Saccharomyces cerevisiae is ideal for systematic studies relying on collections of modified strains (libraries). Despite the significance of yeast libraries and the immense variety of available tags and regulatory elements, only a few such libraries exist, as their construction is extremely expensive and laborious. To overcome these limitations, we developed a SWAp-Tag (SWAT) method that enables one parental library to be modified easily and efficiently to give rise to an endless variety of libraries of choice. To showcase the versatility of the SWAT approach, we constructed and investigated a library of ∼1,800 strains carrying SWAT-GFP modules at the amino termini of endomembrane proteins and then used it to create two new libraries (mCherry and seamless GFP). Our work demonstrates how the SWAT method allows fast and effortless creation of yeast libraries, opening the door to new ways of systematically studying cell biology., Competing Interests: The authors declare no competing financial interests.
- Published
- 2016
- Full Text
- View/download PDF
33. Sugar-induced cephalic-phase insulin release is mediated by a T1r2+T1r3-independent taste transduction pathway in mice.
- Author
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Glendinning JI, Stano S, Holter M, Azenkot T, Goldman O, Margolskee RF, Vasselli JR, and Sclafani A
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- Administration, Oral, Animals, Behavior, Animal drug effects, Blood Glucose drug effects, Blood Glucose metabolism, Carbohydrates blood, Chorda Tympani Nerve drug effects, Chorda Tympani Nerve metabolism, Food Preferences drug effects, Fructose administration & dosage, Genotype, Glucose administration & dosage, Glucose Tolerance Test, Injections, Mice, Inbred C57BL, Mice, Knockout, Phenotype, Receptors, G-Protein-Coupled deficiency, Receptors, G-Protein-Coupled genetics, Receptors, G-Protein-Coupled metabolism, Sucrose administration & dosage, Time Factors, Carbohydrates administration & dosage, Insulin blood, Receptors, G-Protein-Coupled agonists, Signal Transduction drug effects, Sweetening Agents administration & dosage, Taste drug effects
- Abstract
Sensory stimulation from foods elicits cephalic phase responses, which facilitate digestion and nutrient assimilation. One such response, cephalic-phase insulin release (CPIR), enhances glucose tolerance. Little is known about the chemosensory mechanisms that activate CPIR. We studied the contribution of the sweet taste receptor (T1r2+T1r3) to sugar-induced CPIR in C57BL/6 (B6) and T1r3 knockout (KO) mice. First, we measured insulin release and glucose tolerance following oral (i.e., normal ingestion) or intragastric (IG) administration of 2.8 M glucose. Both groups of mice exhibited a CPIR following oral but not IG administration, and this CPIR improved glucose tolerance. Second, we examined the specificity of CPIR. Both mouse groups exhibited a CPIR following oral administration of 1 M glucose and 1 M sucrose but not 1 M fructose or water alone. Third, we studied behavioral attraction to the same three sugar solutions in short-term acceptability tests. B6 mice licked more avidly for the sugar solutions than for water, whereas T1r3 KO mice licked no more for the sugar solutions than for water. Finally, we examined chorda tympani (CT) nerve responses to each of the sugars. Both mouse groups exhibited CT nerve responses to the sugars, although those of B6 mice were stronger. We propose that mice possess two taste transduction pathways for sugars. One mediates behavioral attraction to sugars and requires an intact T1r2+T1r3. The other mediates CPIR but does not require an intact T1r2+T1r3. If the latter taste transduction pathway exists in humans, it should provide opportunities for the development of new treatments for controlling blood sugar., (Copyright © 2015 the American Physiological Society.)
- Published
- 2015
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34. Predicting 30-day readmissions with preadmission electronic health record data.
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Shadmi E, Flaks-Manov N, Hoshen M, Goldman O, Bitterman H, and Balicer RD
- Subjects
- Adult, Aged, Cohort Studies, Decision Support Techniques, Forecasting, Humans, Inpatients statistics & numerical data, Israel epidemiology, Middle Aged, Multivariate Analysis, Outcome Assessment, Health Care, Retrospective Studies, Risk Assessment methods, Electronic Health Records statistics & numerical data, Patient Admission statistics & numerical data, Patient Readmission statistics & numerical data
- Abstract
Background: Readmission prevention should begin as early as possible during the index admission. Early identification may help target patients for within-hospital readmission prevention interventions., Objectives: To develop and validate a 30-day readmission prediction model using data from electronic health records available before the index admission., Research Design: Retrospective cohort study of admissions between January 1 and March 31, 2010., Subjects: Adult enrollees of Clalit Health Services, an integrated delivery system, admitted to an internal medicine ward in any hospital in Israel., Measures: All-cause 30-day emergency readmissions. A prediction score based on before admission electronic health record and administrative data (the Preadmission Readmission Detection Model-PREADM) was developed using a preprocessing variable selection step with decision trees and neural network algorithms. Admissions with a recent prior hospitalization were excluded and automatically flagged as "high-risk." Selected variables were entered into multivariable logistic regression, with a derivation (two-thirds) and a validation cohort (one-third)., Results: The derivation dataset comprised 17,334 admissions, of which 2913 (16.8%) resulted in a 30-day readmission. The PREADM includes 11 variables: chronic conditions, prior health services use, body mass index, and geographical location. The c-statistic was 0.70 in the derivation set and of 0.69 in the validation set. Adding length of stay did not change the discriminatory power of the model., Conclusions: The PREADM is designed for use by health plans for early high-risk case identification, presenting discriminatory power better than or similar to that of previously reported models, most of which include data available only upon discharge.
- Published
- 2015
- Full Text
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35. Endoderm generates endothelial cells during liver development.
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Goldman O, Han S, Hamou W, Jodon de Villeroche V, Uzan G, Lickert H, and Gouon-Evans V
- Subjects
- Animals, Cell Differentiation, Cell Line, Cells, Cultured, Embryonic Stem Cells cytology, Embryonic Stem Cells metabolism, Endothelial Cells metabolism, Hepatocyte Nuclear Factor 3-beta genetics, Hepatocyte Nuclear Factor 3-beta metabolism, Humans, Liver embryology, Mesoderm cytology, Mice, Vascular Endothelial Growth Factor Receptor-2 genetics, Vascular Endothelial Growth Factor Receptor-2 metabolism, Cell Lineage, Endoderm cytology, Endothelial Cells cytology, Liver cytology
- Abstract
Organogenesis requires expansion of the embryonic vascular plexus that migrates into developing organs through a process called angiogenesis. Mesodermal progenitors are thought to derive endothelial cells (ECs) that contribute to both embryonic vasculogenesis and the subsequent organ angiogenesis. Here, we demonstrate that during development of the liver, which is an endoderm derivative, a subset of ECs is generated from FOXA2+ endoderm-derived fetal hepatoblast progenitor cells expressing KDR (VEGFR2/FLK-1). Using human and mouse embryonic stem cell models, we demonstrate that KDR+FOXA2+ endoderm cells developing in hepatic differentiation cultures generate functional ECs. This introduces the concept that ECs originate not exclusively from mesoderm but also from endoderm, supported in Foxa2 lineage-tracing mouse embryos by the identification of FOXA2+ cell-derived CD31+ ECs that integrate the vascular network of developing fetal livers., (Copyright © 2014 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
36. Liver progenitor cell and KDR.
- Author
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Han S, Goldman O, and Gouon-Evans V
- Subjects
- Animals, Humans, Evolution, Molecular, Hepatocytes cytology, Hepatocytes metabolism, Liver growth & development, Stem Cells cytology, Stem Cells metabolism, Vascular Endothelial Growth Factor Receptor-2 metabolism
- Published
- 2014
- Full Text
- View/download PDF
37. Hepatic cells derived from induced pluripotent stem cells of pigtail macaques support hepatitis C virus infection.
- Author
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Sourisseau M, Goldman O, He W, Gori JL, Kiem HP, Gouon-Evans V, and Evans MJ
- Subjects
- Animals, Cell Line, Cells, Cultured, Hepatitis C pathology, Hepatitis C physiopathology, Hepatocytes pathology, Host-Pathogen Interactions genetics, Humans, Induced Pluripotent Stem Cells pathology, Occludin physiology, Tetraspanin 28 deficiency, Tetraspanin 28 physiology, Virus Internalization, Virus Replication physiology, Disease Models, Animal, Hepacivirus pathogenicity, Hepatitis C virology, Hepatocytes virology, Induced Pluripotent Stem Cells virology, Macaca nemestrina
- Abstract
The narrow species tropism of hepatitis C virus (HCV) limits animal studies. We found that pigtail macaque (Macaca nemestrina) hepatic cells derived from induced pluripotent stem cells support the entire HCV life cycle, although infection efficiency was limited by defects in the HCV cell entry process. This block was overcome by either increasing occludin expression, complementing the cells with human CD81, or infecting them with a strain of HCV with less restricted requirements for CD81. Using this system, we can modify viral and host cell genetics to make pigtail macaques a suitable, clinically relevant model for the study of HCV infection., (Copyright © 2013 AGA Institute. Published by Elsevier Inc. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
38. KDR identifies a conserved human and murine hepatic progenitor and instructs early liver development.
- Author
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Goldman O, Han S, Sourisseau M, Dziedzic N, Hamou W, Corneo B, D'Souza S, Sato T, Kotton DN, Bissig KD, Kalir T, Jacobs A, Evans T, Evans MJ, and Gouon-Evans V
- Subjects
- Animals, Humans, Liver cytology, Liver metabolism, Mice, Mice, Inbred Strains, Evolution, Molecular, Hepatocytes cytology, Hepatocytes metabolism, Liver growth & development, Stem Cells cytology, Stem Cells metabolism, Vascular Endothelial Growth Factor Receptor-2 metabolism
- Abstract
Understanding the fetal hepatic niche is essential for optimizing the generation of functional hepatocyte-like cells (hepatic cells) from human embryonic stem cells (hESCs). Here, we show that KDR (VEGFR2/FLK-1), previously assumed to be mostly restricted to mesodermal lineages, marks a hESC-derived hepatic progenitor. hESC-derived endoderm cells do not express KDR but, when cultured in media supporting hepatic differentiation, generate KDR+ hepatic progenitors and KDR- hepatic cells. KDR+ progenitors require active KDR signaling both to instruct their own differentiation into hepatic cells and to non-cell-autonomously support the functional maturation of cocultured KDR- hepatic cells. Analysis of human fetal livers suggests that similar progenitors are present in human livers. Lineage tracing in mice provides in vivo evidence of a KDR+ hepatic progenitor for fetal hepatoblasts, adult hepatocytes, and adult cholangiocytes. Altogether, our findings reveal that KDR is a conserved marker for endoderm-derived hepatic progenitors and a functional receptor instructing early liver development., (Copyright © 2013 Elsevier Inc. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
39. Generation of functional hepatic cells from pluripotent stem cells.
- Author
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Han S, Bourdon A, Hamou W, Dziedzic N, Goldman O, and Gouon-Evans V
- Abstract
Liver diseases affect millions of people worldwide, especially in developing country. According to the American Liver Foundation, nearly 1 in every 10 Americans suffers from some form of liver disease. Even though, the liver has great ability to self-repair, in end-stage liver diseases including fibrosis, cirrhosis, and liver cancer induced by viral hepatitis and drugs, the liver regenerative capacity is exhausted. The only successful treatment for chronic liver failure is the whole liver transplantation. More recently, some clinical trials using hepatocyte transplantation have shown some clinical improvement for metabolic liver diseases and acute liver failure. However, the shortage of donor livers remains a life-threatening challenge in liver disease patients. To overcome the scarcity of donor livers, hepatocytes generated from embryonic stem cell or induced pluripotent stem cell differentiation cultures could provide an unlimited supply of such cells for transplantation. This review provides an updated summary of hepatic differentiation protocols published so far, with a characterization of the hepatic cells generated in vitro and their ability to regenerate damaged livers in vivo following transplantation in pre-clinical liver deficient mouse models.
- Published
- 2012
- Full Text
- View/download PDF
40. Identification of an ICP27-responsive element in the coding region of a herpes simplex virus type 1 late gene.
- Author
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Sedlackova L, Perkins KD, Meyer J, Strain AK, Goldman O, and Rice SA
- Subjects
- Animals, Chlorocebus aethiops, DNA Replication, Gene Silencing, Herpes Simplex genetics, Herpes Simplex metabolism, Herpesvirus 1, Human metabolism, Humans, Immediate-Early Proteins genetics, Molecular Sequence Data, Open Reading Frames, Vero Cells, Viral Envelope Proteins genetics, Base Sequence, Gene Expression Regulation, Viral, Herpesvirus 1, Human genetics, Immediate-Early Proteins metabolism, Viral Envelope Proteins metabolism
- Abstract
During productive herpes simplex virus type 1 (HSV-1) infection, a subset of viral delayed-early (DE) and late (L) genes require the immediate-early (IE) protein ICP27 for their expression. However, the cis-acting regulatory sequences in DE and L genes that mediate their specific induction by ICP27 are unknown. One viral L gene that is highly dependent on ICP27 is that encoding glycoprotein C (gC). We previously demonstrated that this gene is posttranscriptionally transactivated by ICP27 in a plasmid cotransfection assay. Based on our past results, we hypothesized that the gC gene possesses a cis-acting inhibitory sequence and that ICP27 overcomes the effects of this sequence to enable efficient gC expression. To test this model, we systematically deleted sequences from the body of the gC gene and tested the resulting constructs for expression. In so doing, we identified a 258-bp "silencing element" (SE) in the 5' portion of the gC coding region. When present, the SE inhibits gC mRNA accumulation from a transiently transfected gC gene, unless ICP27 is present. Moreover, the SE can be transferred to another HSV-1 gene, where it inhibits mRNA accumulation in the absence of ICP27 and confers high-level expression in the presence of ICP27. Thus, for the first time, an ICP27-responsive sequence has been identified in a physiologically relevant ICP27 target gene. To see if the SE functions during viral infection, we engineered HSV-1 recombinants that lack the SE, either in a wild-type (WT) or ICP27-null genetic background. In an ICP27-null background, deletion of the SE led to ICP27-independent expression of the gC gene, demonstrating that the SE functions during viral infection. Surprisingly, the ICP27-independent gC expression seen with the mutant occurred even in the absence of viral DNA synthesis, indicating that the SE helps to regulate the tight DNA replication-dependent expression of gC.
- Published
- 2010
- Full Text
- View/download PDF
41. A boost of BMP4 accelerates the commitment of human embryonic stem cells to the endothelial lineage.
- Author
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Goldman O, Feraud O, Boyer-Di Ponio J, Driancourt C, Clay D, Le Bousse-Kerdiles MC, Bennaceur-Griscelli A, and Uzan G
- Subjects
- Antigens, CD biosynthesis, Cadherins biosynthesis, Carrier Proteins pharmacology, Cell Differentiation drug effects, Cell Growth Processes drug effects, Cell Growth Processes physiology, Cells, Cultured, Cytokines pharmacology, Embryonic Stem Cells cytology, Embryonic Stem Cells metabolism, Endothelial Cells cytology, Endothelial Cells metabolism, Flow Cytometry, Humans, Kinetics, Transcription Factors biosynthesis, Bone Morphogenetic Protein 4 pharmacology, Embryonic Stem Cells drug effects, Endothelial Cells drug effects
- Abstract
Embryoid bodies (EBs) generated during differentiation of human embryonic stem cells (hESCs) contain vascular-like structures, suggesting that commitment of mesoderm progenitors into endothelial cells occurs spontaneously. We showed that bone morphogenetic protein 4 (BMP4), an inducer of mesoderm, accelerates the peak expression of CD133/kinase insert domain-containing receptor (KDR) and CD144/KDR. Because the CD133(+)KDR(+) population could represent endothelial progenitors, we sorted them at day 7 and cultured them in endothelial medium. These cells were, however, unable to differentiate into endothelial cells. Under standard conditions, the CD144(+)KDR(+) population represents up to 10% of the total cells at day 12. In culture, these cells, if sorted, give rise to a homogeneous population with a morphology typical of endothelial cells and express endothelial markers. These endothelial cells derived from the day 12 sorted population were functional, as assessed by different in vitro assays. When EBs were stimulated by BMP4, the CD144(+)KDR(+) peak was shifted to day 7. Most of these cells, however, were CD31(-), becoming CD31(+) in culture. They then expressed von Willebrand factor and were functional. This suggests that, initially, the BMP4-boosted day 7, CD144(+)KDR(+)CD31(-) population represents immature endothelial cells that differentiate into mature endothelial cells in culture. The expression of OCT3/4, a marker of immaturity for hESCs decreases during EB differentiation, decreasing faster following BMP4 induction. We also show that BMP4 inhibits the global expression of GATA2 and RUNX1, two transcription factors involved in hemangioblast formation, at day 7 and day 12.
- Published
- 2009
- Full Text
- View/download PDF
42. Significance of residual leukaemia transcripts after bone marrow transplant for CML.
- Author
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Hughes T, Martiat P, Morgan G, Sawyers C, Witte ON, and Goldman ON
- Subjects
- False Positive Reactions, Humans, Polymerase Chain Reaction, Prognosis, Bone Marrow Transplantation, Leukemia, Myelogenous, Chronic, BCR-ABL Positive genetics, RNA, Messenger analysis, RNA, Neoplasm analysis
- Published
- 1990
- Full Text
- View/download PDF
43. ANALYTIC ALMOST-PERIODIC FUNCTIONS. I.
- Author
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Goldman O
- Published
- 1954
- Full Text
- View/download PDF
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