271 results on '"Goedmakers A"'
Search Results
2. Cost effectiveness of implanting a prosthesis after anterior cervical discectomy for radiculopathy: results of the NECK randomized controlled trial
- Author
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Heijdra Suasnabar, Jan M., Vleggeert-Lankamp, Carmen L.A., Goedmakers, Caroline M.W., de Vries, Floor, Arts, Mark P., and van den Akker-van Marle, M. Elske
- Published
- 2023
- Full Text
- View/download PDF
3. Long-term results of the NECK trial—implanting a disc prosthesis after cervical anterior discectomy cannot prevent adjacent segment disease: five-year clinical follow-up of a double-blinded randomised controlled trial
- Author
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Goedmakers, Caroline M.W., de Vries, Floor, Bosscher, Lisette, Peul, Wilco C., Arts, Mark P., and Vleggeert-Lankamp, Carmen L.A.
- Published
- 2023
- Full Text
- View/download PDF
4. The impact of mental health on outcome after anterior cervical discectomy: cohort study assessing the influence of mental health using predictive modelling
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Goedmakers, Caroline M. W., van Beelen, Ilse, Komen, Floor, van Zwet, Erik W., Peul, Wilco C., Arts, Mark P., and Vleggeert-Lankamp, Carmen L. A.
- Published
- 2022
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5. Predicting range shifts of African apes under global change scenarios
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Carvalho, Joana S., Graham, Bruce, Bocksberger, Gaёlle, Maisels, Fiona, Williamson, Elizabeth A., Wich, Serge, Sop, Tenekwetche, Amarasekaran, Bala, Barca, Benjamin, Barrie, Abdulai, Bergl, Richard A., Boesch, Christophe, Boesch, Hedwige, Brncic, Terry M., Buys, Bartelijntje, Chancellor, Rebecca, Danquah, Emmanuel, Doumbé, Osiris A., Le-Duc, Stephane Y., Galat-Luong, Anh, Ganas, Jessica, Gatti, Sylvain, Ghiurghi, Andrea, Goedmakers, Annemarie, Granier, Nicolas, Hakizimana, Dismas, Haurez, Barbara, Head, Josephine, Herbinger, Ilka, Hillers, Annika, Jones, Sorrel, Junker, Jessica, Maputla, Nakedi, Manasseh, Eno-Nku, McCarthy, Maureen S., Molokwu-Odozi, Mary, Morgan, Bethan J., Nakashima, Yoshihiro, N’Goran, Paul K., Nixon, Stuart, Nkembi, Louis, Normand, Emmanuelle, Nzooh, Laurent D.Z., Olson, Sarah H., Payne, Leon, Petre, Charles-Albert, Piel, Alex K., Pintea, Lilian, Plumptre, Andrew J., Rundus, Aaron, Serckx, Adeline, Stewart, Fiona A., Sunderland-Groves, Jacqueline, Tagg, Nikki, Todd, Angelique, Vosper, Ashley, Wenceslau, José F.C., Wessling, Erin G., Willie, Jacob, and Kühl, Hjalmar S.
- Published
- 2021
6. Population dynamics and genetic connectivity in recent chimpanzee history
- Author
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Fontsere, Claudia, Kuhlwilm, Martin, Morcillo-Suarez, Carlos, Alvarez-Estape, Marina, Lester, Jack D., Gratton, Paolo, Schmidt, Joshua M., Dieguez, Paula, Aebischer, Thierry, Álvarez-Varona, Paula, Agbor, Anthony, Angedakin, Samuel, Assumang, Alfred K., Ayimisin, Emmanuel A., Bailey, Emma, Barubiyo, Donatienne, Bessone, Mattia, Carretero-Alonso, Andrea, Chancellor, Rebecca, Cohen, Heather, Danquah, Emmanuel, Deschner, Tobias, Dunn, Andrew, Dupain, Jef, Egbe, Villard E., Feliu, Olga, Goedmakers, Annemarie, Granjon, Anne-Céline, Head, Josephine, Hedwig, Daniela, Hermans, Veerle, Hernandez-Aguilar, R. Adriana, Imong, Inaoyom, Jones, Sorrel, Junker, Jessica, Kadam, Parag, Kaiser, Mike, Kambere, Mbangi, Kambale, Magloire V., Kalan, Ammie K., Kienast, Ivonne, Kujirakwinja, Deo, Langergraber, Kevin, Lapuente, Juan, Larson, Bradley, Laudisoit, Anne, Lee, Kevin, Llana, Manuel, Llorente, Miquel, Marrocoli, Sergio, Morgan, David, Mulindahabi, Felix, Murai, Mizuki, Neil, Emily, Nicholl, Sonia, Nixon, Stuart, Normand, Emma, Orbell, Chris, Ormsby, Lucy J., Pacheco, Liliana, Piel, Alex, Riera, Laura, Robbins, Martha M., Rundus, Aaron, Sanz, Crickette, Sciaky, Lilah, Sommer, Volker, Stewart, Fiona A., Tagg, Nikki, Tédonzong, Luc Roscelin, Ton, Els, van Schijndel, Joost, Vergnes, Virginie, Wessling, Erin G., Willie, Jacob, Wittig, Roman M., Yuh, Yisa G., Yurkiw, Kyle, Zuberbuehler, Klaus, Hecht, Jochen, Vigilant, Linda, Boesch, Christophe, Andrés, Aida M., Hughes, David A., Kühl, Hjalmar S., Lizano, Esther, Arandjelovic, Mimi, and Marques-Bonet, Tomas
- Published
- 2022
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- View/download PDF
7. Artificial Intelligence and Healthcare Ethics
- Author
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Rana, Aakanksha, Goedmakers, Caroline M. W., Smith, Timothy R., Honeybul, Stephen, editor, and Kolias, Angelos G., editor
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- 2021
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8. Team-Based Decision-Making in Traumatic Brain Injury
- Author
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Smith, Timothy R., Stopa, Brittany M., Goedmakers, Caroline M. W., Rana, Aakanksha, Honeybul, Stephen, editor, and Kolias, Angelos G., editor
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- 2021
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9. Machine learning for image analysis in the cervical spine: Systematic review of the available models and methods
- Author
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Goedmakers, C.M.W., Pereboom, L.M., Schoones, J.W., de Leeuw den Bouter, M.L., Remis, R.F., Staring, M., and Vleggeert-Lankamp, C.L.A.
- Published
- 2022
- Full Text
- View/download PDF
10. Deep Learning on Preoperative Radiographs for Clinical Success Prediction after Surgery for Cervical Degenerative Disease
- Author
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Caroline Goedmakers, Leonie Pereboom, Merel de Leeuw den Bouter, Rob Remis, Marius Staring, and Carmen Vleggeert-Lankamp
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Neurology. Diseases of the nervous system ,RC346-429 - Published
- 2023
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- View/download PDF
11. Population dynamics and genetic connectivity in recent chimpanzee history
- Author
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Claudia Fontsere, Martin Kuhlwilm, Carlos Morcillo-Suarez, Marina Alvarez-Estape, Jack D. Lester, Paolo Gratton, Joshua M. Schmidt, Paula Dieguez, Thierry Aebischer, Paula Álvarez-Varona, Anthony Agbor, Samuel Angedakin, Alfred K. Assumang, Emmanuel A. Ayimisin, Emma Bailey, Donatienne Barubiyo, Mattia Bessone, Andrea Carretero-Alonso, Rebecca Chancellor, Heather Cohen, Emmanuel Danquah, Tobias Deschner, Andrew Dunn, Jef Dupain, Villard E. Egbe, Olga Feliu, Annemarie Goedmakers, Anne-Céline Granjon, Josephine Head, Daniela Hedwig, Veerle Hermans, R. Adriana Hernandez-Aguilar, Inaoyom Imong, Sorrel Jones, Jessica Junker, Parag Kadam, Mike Kaiser, Mbangi Kambere, Magloire V. Kambale, Ammie K. Kalan, Ivonne Kienast, Deo Kujirakwinja, Kevin Langergraber, Juan Lapuente, Bradley Larson, Anne Laudisoit, Kevin Lee, Manuel Llana, Miquel Llorente, Sergio Marrocoli, David Morgan, Felix Mulindahabi, Mizuki Murai, Emily Neil, Sonia Nicholl, Stuart Nixon, Emma Normand, Chris Orbell, Lucy J. Ormsby, Liliana Pacheco, Alex Piel, Laura Riera, Martha M. Robbins, Aaron Rundus, Crickette Sanz, Lilah Sciaky, Volker Sommer, Fiona A. Stewart, Nikki Tagg, Luc Roscelin Tédonzong, Els Ton, Joost van Schijndel, Virginie Vergnes, Erin G. Wessling, Jacob Willie, Roman M. Wittig, Yisa G. Yuh, Kyle Yurkiw, Klaus Zuberbuehler, Jochen Hecht, Linda Vigilant, Christophe Boesch, Aida M. Andrés, David A. Hughes, Hjalmar S. Kühl, Esther Lizano, Mimi Arandjelovic, and Tomas Marques-Bonet
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chimpanzee ,non-invasive samples ,fecal samples ,hybridization capture ,population genetics ,conservation genomics ,Genetics ,QH426-470 ,Internal medicine ,RC31-1245 - Abstract
Summary: Knowledge on the population history of endangered species is critical for conservation, but whole-genome data on chimpanzees (Pan troglodytes) is geographically sparse. Here, we produced the first non-invasive geolocalized catalog of genomic diversity by capturing chromosome 21 from 828 non-invasive samples collected at 48 sampling sites across Africa. The four recognized subspecies show clear genetic differentiation correlating with known barriers, while previously undescribed genetic exchange suggests that these have been permeable on a local scale. We obtained a detailed reconstruction of population stratification and fine-scale patterns of isolation, migration, and connectivity, including a comprehensive picture of admixture with bonobos (Pan paniscus). Unlike humans, chimpanzees did not experience extended episodes of long-distance migrations, which might have limited cultural transmission. Finally, based on local rare variation, we implement a fine-grained geolocalization approach demonstrating improved precision in determining the origin of confiscated chimpanzees.
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- 2022
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12. Recent genetic connectivity and clinal variation in chimpanzees
- Author
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Jack D. Lester, Linda Vigilant, Paolo Gratton, Maureen S. McCarthy, Christopher D. Barratt, Paula Dieguez, Anthony Agbor, Paula Álvarez-Varona, Samuel Angedakin, Emmanuel Ayuk Ayimisin, Emma Bailey, Mattia Bessone, Gregory Brazzola, Rebecca Chancellor, Heather Cohen, Emmanuel Danquah, Tobias Deschner, Villard Ebot Egbe, Manasseh Eno-Nku, Annemarie Goedmakers, Anne-Céline Granjon, Josephine Head, Daniela Hedwig, R. Adriana Hernandez-Aguilar, Kathryn J. Jeffery, Sorrel Jones, Jessica Junker, Parag Kadam, Michael Kaiser, Ammie K. Kalan, Laura Kehoe, Ivonne Kienast, Kevin E. Langergraber, Juan Lapuente, Anne Laudisoit, Kevin Lee, Sergio Marrocoli, Vianet Mihindou, David Morgan, Geoffrey Muhanguzi, Emily Neil, Sonia Nicholl, Christopher Orbell, Lucy Jayne Ormsby, Liliana Pacheco, Alex Piel, Martha M. Robbins, Aaron Rundus, Crickette Sanz, Lilah Sciaky, Alhaji M. Siaka, Veronika Städele, Fiona Stewart, Nikki Tagg, Els Ton, Joost van Schijndel, Magloire Kambale Vyalengerera, Erin G. Wessling, Jacob Willie, Roman M. Wittig, Yisa Ginath Yuh, Kyle Yurkiw, Klaus Zuberbuehler, Christophe Boesch, Hjalmar S. Kühl, and Mimi Arandjelovic
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Biology (General) ,QH301-705.5 - Abstract
Lester and colleagues use faecal samples and genetic analyses to investigate the genetic connectivity across chimpanzees. Their results indicate that the global pattern of genetic diversity in chimpanzees is largely characterized by a pattern of isolation by distance with several isolated populations exhibiting strong local differentiation.
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- 2021
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13. Criteria for success after surgery for cervical radiculopathy—estimates for a substantial amount of improvement in core outcome measures
- Author
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Mjåset, Christer, Zwart, John-Anker, Goedmakers, Caroline M.W., Smith, Timothy R., Solberg, Tore K., and Grotle, Margreth
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- 2020
- Full Text
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14. Reply to letter to the editor regarding, “Long-term results of the NECK trial—implanting a disc prosthesis after cervical anterior discectomy cannot prevent adjacent segment disease: five year clinical follow-up of a double-blinded randomized controlled trial”
- Author
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Goedmakers, Caroline M.W., primary, de Vries, Floor, additional, Bosscher, Lisette, additional, Peul, Wilco C., additional, Arts, Mark P., additional, and Vleggeert-Lankamp, Carmen L.A., additional
- Published
- 2024
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15. CD4 receptor diversity in chimpanzees protects against SIV infection
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Bibollet-Ruche, Frederic, Russell, Ronnie M., Liu, Weimin, Stewart-Jones, Guillaume B. E., Sherrill-Mix, Scott, Li, Yingying, Learn, Gerald H., Smith, Andrew G., Gondim, Marcos V. P., Plenderleith, Lindsey J., Decker, Julie M., Easlick, Juliet L., Wetzel, Katherine S., Collman, Ronald G., Ding, Shilei, Finzi, Andrés, Ayouba, Ahidjo, Peeters, Martine, Leendertz, Fabian H., van Schijndel, Joost, Goedmakers, Annemarie, Ton, Els, Boesch, Christophe, Kuehl, Hjalmar, Arandjelovic, Mimi, Dieguez, Paula, Murai, Mizuki, Colin, Christelle, Koops, Kathelijne, Speede, Sheri, Gonder, Mary K., Muller, Martin N., Sanz, Crickette M., Morgan, David B., Atencia, Rebecca, Cox, Debby, Piel, Alex K., Stewart, Fiona A., Ndjango, Jean-Bosco N., Mjungu, Deus, Lonsdorf, Elizabeth V., Pusey, Anne E., Kwong, Peter D., Sharp, Paul M., Shaw, George M., and Hahn, Beatrice H.
- Published
- 2019
16. Environmental variability supports chimpanzee behavioural diversity
- Author
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Ammie K. Kalan, Lars Kulik, Mimi Arandjelovic, Christophe Boesch, Fabian Haas, Paula Dieguez, Christopher D. Barratt, Ekwoge E. Abwe, Anthony Agbor, Samuel Angedakin, Floris Aubert, Emmanuel Ayuk Ayimisin, Emma Bailey, Mattia Bessone, Gregory Brazzola, Valentine Ebua Buh, Rebecca Chancellor, Heather Cohen, Charlotte Coupland, Bryan Curran, Emmanuel Danquah, Tobias Deschner, Dervla Dowd, Manasseh Eno-Nku, J. Michael Fay, Annemarie Goedmakers, Anne-Céline Granjon, Josephine Head, Daniela Hedwig, Veerle Hermans, Kathryn J. Jeffery, Sorrel Jones, Jessica Junker, Parag Kadam, Mohamed Kambi, Ivonne Kienast, Deo Kujirakwinja, Kevin E. Langergraber, Juan Lapuente, Bradley Larson, Kevin C. Lee, Vera Leinert, Manuel Llana, Sergio Marrocoli, Amelia C. Meier, Bethan Morgan, David Morgan, Emily Neil, Sonia Nicholl, Emmanuelle Normand, Lucy Jayne Ormsby, Liliana Pacheco, Alex Piel, Jodie Preece, Martha M. Robbins, Aaron Rundus, Crickette Sanz, Volker Sommer, Fiona Stewart, Nikki Tagg, Claudio Tennie, Virginie Vergnes, Adam Welsh, Erin G. Wessling, Jacob Willie, Roman M. Wittig, Yisa Ginath Yuh, Klaus Zuberbühler, and Hjalmar S. Kühl
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Science - Abstract
Environmental variability is one potential driver of behavioural and cultural diversity in humans and other animals. Here, the authors show that chimpanzee behavioural diversity is higher in habitats that are more seasonal and historically unstable, and in savannah woodland relative to forested sites.
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- 2020
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17. Machine learning for image analysis in the cervical spine: Systematic review of the available models and methods
- Author
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C.M.W. Goedmakers, L.M. Pereboom, J.W. Schoones, M.L. de Leeuw den Bouter, R.F. Remis, M. Staring, and C.L.A. Vleggeert-Lankamp
- Subjects
Cervical spine ,Computer aided diagnostics ,Radiological imaging ,Machine learning ,Image analysis ,Neurology. Diseases of the nervous system ,RC346-429 - Published
- 2022
- Full Text
- View/download PDF
18. Recent genetic connectivity and clinal variation in chimpanzees
- Author
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Lester, Jack D., Vigilant, Linda, Gratton, Paolo, McCarthy, Maureen S., Barratt, Christopher D., Dieguez, Paula, Agbor, Anthony, Álvarez-Varona, Paula, Angedakin, Samuel, Ayimisin, Emmanuel Ayuk, Bailey, Emma, Bessone, Mattia, Brazzola, Gregory, Chancellor, Rebecca, Cohen, Heather, Danquah, Emmanuel, Deschner, Tobias, Egbe, Villard Ebot, Eno-Nku, Manasseh, Goedmakers, Annemarie, Granjon, Anne-Céline, Head, Josephine, Hedwig, Daniela, Hernandez-Aguilar, R. Adriana, Jeffery, Kathryn J., Jones, Sorrel, Junker, Jessica, Kadam, Parag, Kaiser, Michael, Kalan, Ammie K., Kehoe, Laura, Kienast, Ivonne, Langergraber, Kevin E., Lapuente, Juan, Laudisoit, Anne, Lee, Kevin, Marrocoli, Sergio, Mihindou, Vianet, Morgan, David, Muhanguzi, Geoffrey, Neil, Emily, Nicholl, Sonia, Orbell, Christopher, Ormsby, Lucy Jayne, Pacheco, Liliana, Piel, Alex, Robbins, Martha M., Rundus, Aaron, Sanz, Crickette, Sciaky, Lilah, Siaka, Alhaji M., Städele, Veronika, Stewart, Fiona, Tagg, Nikki, Ton, Els, van Schijndel, Joost, Vyalengerera, Magloire Kambale, Wessling, Erin G., Willie, Jacob, Wittig, Roman M., Yuh, Yisa Ginath, Yurkiw, Kyle, Zuberbuehler, Klaus, Boesch, Christophe, Kühl, Hjalmar S., and Arandjelovic, Mimi
- Published
- 2021
- Full Text
- View/download PDF
19. Author Correction: Environmental variability supports chimpanzee behavioural diversity
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Kalan, Ammie K., Kulik, Lars, Arandjelovic, Mimi, Boesch, Christophe, Haas, Fabian, Dieguez, Paula, Barratt, Christopher D., Abwe, Ekwoge E., Agbor, Anthony, Angedakin, Samuel, Aubert, Floris, Ayimisin, Emmanuel Ayuk, Bailey, Emma, Bessone, Mattia, Brazzola, Gregory, Buh, Valentine Ebua, Chancellor, Rebecca, Cohen, Heather, Coupland, Charlotte, Curran, Bryan, Danquah, Emmanuel, Deschner, Tobias, Dowd, Dervla, Eno-Nku, Manasseh, Fay, J. Michael, Goedmakers, Annemarie, Granjon, Anne-Céline, Head, Josephine, Hedwig, Daniela, Hermans, Veerle, Jeffery, Kathryn J., Jones, Sorrel, Junker, Jessica, Kadam, Parag, Kambi, Mohamed, Kienast, Ivonne, Kujirakwinja, Deo, Langergraber, Kevin E., Lapuente, Juan, Larson, Bradley, Lee, Kevin C., Leinert, Vera, Llana, Manuel, Marrocoli, Sergio, Meier, Amelia C., Morgan, Bethan, Morgan, David, Neil, Emily, Nicholl, Sonia, Normand, Emmanuelle, Ormsby, Lucy Jayne, Pacheco, Liliana, Piel, Alex, Preece, Jodie, Robbins, Martha M., Rundus, Aaron, Sanz, Crickette, Sommer, Volker, Stewart, Fiona, Tagg, Nikki, Tennie, Claudio, Vergnes, Virginie, Welsh, Adam, Wessling, Erin G., Willie, Jacob, Wittig, Roman M., Yuh, Yisa Ginath, Zuberbühler, Klaus, and Kühl, Hjalmar S.
- Published
- 2021
- Full Text
- View/download PDF
20. Cervical radiculopathy: is a prosthesis preferred over fusion surgery? A systematic review
- Author
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Goedmakers, Caroline M. W., Janssen, Tessa, Yang, Xiaoyu, Arts, Mark P., Bartels, Ronald H. M. A., and Vleggeert-Lankamp, Carmen L. A.
- Published
- 2020
- Full Text
- View/download PDF
21. The association of cervical sagittal alignment with adjacent segment degeneration
- Author
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Yang, Xiaoyu, Bartels, Ronald H. M. A., Donk, Roland, Arts, Mark P., Goedmakers, Caroline M. W., and Vleggeert-Lankamp, Carmen L. A.
- Published
- 2020
- Full Text
- View/download PDF
22. Cost effectiveness of implanting a prosthesis after anterior cervical discectomy for radiculopathy: results of the NECK randomized controlled trial
- Author
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Jan M. Heijdra Suasnabar, Carmen L.A. Vleggeert-Lankamp, Caroline M.W. Goedmakers, Floor de Vries, Mark P. Arts, and M. Elske van den Akker-van Marle
- Subjects
Surgery ,Orthopedics and Sports Medicine ,Neurology (clinical) - Published
- 2023
- Full Text
- View/download PDF
23. The Clinical Relevance of the Cervical Disc Prosthesis: Combining Clinical Results of Two RCTs
- Author
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Goedmakers, Caroline M.W., Bartels, Ronald H.M.A., Donk, Roland D., Arts, Mark P., van Zwet, Erik W., and Vleggeert-Lankamp, Carmen L.A.
- Published
- 2022
- Full Text
- View/download PDF
24. Structure of Chimpanzee Gut Microbiomes across Tropical Africa
- Author
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Clifton P. Bueno de Mesquita, Lauren M. Nichols, Matthew J. Gebert, Caihong Vanderburgh, Gaëlle Bocksberger, Jack D. Lester, Ammie K. Kalan, Paula Dieguez, Maureen S. McCarthy, Anthony Agbor, Paula Álvarez Varona, Ayuk Emmanuel Ayimisin, Mattia Bessone, Rebecca Chancellor, Heather Cohen, Charlotte Coupland, Tobias Deschner, Villard Ebot Egbe, Annemarie Goedmakers, Anne-Céline Granjon, Cyril C. Grueter, Josephine Head, R. Adriana Hernandez-Aguilar, Kathryn J. Jeffery, Sorrel Jones, Parag Kadam, Michael Kaiser, Juan Lapuente, Bradley Larson, Sergio Marrocoli, David Morgan, Badru Mugerwa, Felix Mulindahabi, Emily Neil, Protais Niyigaba, Liliana Pacheco, Alex K. Piel, Martha M. Robbins, Aaron Rundus, Crickette M. Sanz, Lilah Sciaky, Douglas Sheil, Volker Sommer, Fiona A. Stewart, Els Ton, Joost van Schijndel, Virginie Vergnes, Erin G. Wessling, Roman M. Wittig, Yisa Ginath Yuh, Kyle Yurkiw, Klaus Zuberbühler, Jan F. Gogarten, Anna Heintz-Buschart, Alexandra N. Muellner-Riehl, Christophe Boesch, Hjalmar S. Kühl, Noah Fierer, Mimi Arandjelovic, and Robert R. Dunn
- Subjects
Microbiology ,QR1-502 - Abstract
Gut microbial communities are drivers of primate physiology and health, but the factors that influence the gut microbiome in wild primate populations remain largely undetermined. We report data from a continent-wide survey of wild chimpanzee gut microbiota and highlight the effects of genetics, vegetation, and potentially even tool use at different spatial scales on the chimpanzee gut microbiome, including bacteria, archaea, and eukaryotic parasites.
- Published
- 2021
- Full Text
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25. p65BTK is a novel potential actionable target in KRAS-mutated/EGFR-wild type lung adenocarcinoma
- Author
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Federica Giordano, Valentina Vaira, Diego Cortinovis, Sara Bonomo, Joyce Goedmakers, Federica Brena, Annamaria Cialdella, Leonarda Ianzano, Irene Forno, Maria Grazia Cerrito, Roberto Giovannoni, Gian Luca Ferri, Ennio Tasciotti, Silve Vicent, Francesco Damarco, Silvano Bosari, Marialuisa Lavitrano, and Emanuela Grassilli
- Subjects
NSCLC ,Drug resistance ,p65BTK ,BTK inhibitors ,EGFR ,EGFR inhibitors ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Lung cancer is still the main cause of cancer death worldwide despite the availability of targeted therapies and immune-checkpoint inhibitors combined with chemotherapy. Cancer cell heterogeneity and primary or acquired resistance mechanisms cause the elusive behaviour of this cancer and new biomarkers and active drugs are urgently needed to overcome these limitations. p65BTK, a novel isoform of the Bruton Tyrosine Kinase may represent a new actionable target in non-small cell lung cancer (NSCLC). Methods p65BTK expression was evaluated by immunohistochemistry in 382 NSCLC patients with complete clinico-pathological records including smoking habit, ALK and EGFR status, and in metastatic lymph nodes of 30 NSCLC patients. NSCLC cell lines mutated for p53 and/or a component of the RAS/MAPK pathway and primary lung cancer-derived cells from Kras/Trp53 null mice were used as a preclinical model. The effects of p65BTK inhibition by BTK Tyrosine Kinase Inhibitors (TKIs) (Ibrutinib, AVL-292, RN486) and first-generation EGFR-TKIs (Gefitinib, Erlotinib) on cell viability were evaluated by MTT. The effects of BTK-TKIs on cell growth and clonogenicity were assessed by crystal violet and colony assays, respectively. Cell toxicity assays were performed to study the effect of the combination of non-toxic concentrations of BTK-TKIs with EGFR-TKIs and standard-of-care (SOC) chemotherapy (Cisplatin, Gemcitabine, Pemetrexed). Results p65BTK was significantly over-expressed in EGFR-wild type (wt) adenocarcinomas (AdC) from non-smoker patients and its expression was also preserved at the metastatic site. p65BTK was also over-expressed in cell lines mutated for KRAS or for a component of the RAS/MAPK pathway and in tumors from Kras/Trp53 null mice. BTK-TKIs were more effective than EGFR-TKIs in decreasing cancer cell viability and significantly impaired cell proliferation and clonogenicity. Moreover, non-toxic doses of BTK-TKIs re-sensitized drug-resistant NSCLC cell lines to both target- and SOC therapy, independently from EGFR/KRAS status. Conclusions p65BTK results as an emerging actionable target in non-smoking EGFR-wt AdC, also at advanced stages of disease. Notably, these patients are not eligible for EGFR-TKIs-based therapy due to a lack of EGFR mutation. The combination of BTK-TKIs with EGFR-TKIs is cytotoxic for EGFR-wt/KRAS-mutant/p53-null tumors and BTK-TKIs re-sensitizes drug-resistant NSCLC to SOC chemotherapy. Therefore, our data suggest that adding BTK-TKIs to SOC chemotherapy and EGFR-targeted therapy may open new avenues for clinical trials in currently untreatable NSCLC.
- Published
- 2019
- Full Text
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26. Long-term results of the NECK trial—implanting a disc prosthesis after cervical anterior discectomy cannot prevent adjacent segment disease: five-year clinical follow-up of a double-blinded randomised controlled trial
- Author
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Caroline M.W. Goedmakers, Floor de Vries, Lisette Bosscher, Wilco C. Peul, Mark P. Arts, and Carmen L.A. Vleggeert-Lankamp
- Subjects
Surgery ,Orthopedics and Sports Medicine ,Neurology (clinical) - Published
- 2023
- Full Text
- View/download PDF
27. The effect of discectomy on foraminal height in cervical surgery
- Author
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Géraldine Lafeber, C. Goedmakers, M. Arts, and C.L.A. Vleggeert-Lankamp
- Subjects
Neurology. Diseases of the nervous system ,RC346-429 - Published
- 2021
- Full Text
- View/download PDF
28. Predicting adjacent segment disease with deep learning on pre-operative cervical MRI for patients undergoing surgery for cervical radiculopathy
- Author
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C.M. Goedmakers, A.M. Lak, A.H. Duey, A.W. Senko, O. Arnaout, M.W. Groff, T.R. Smith, C.L. Vleggeert-Lankamp, H.A. Zaidi, A. Rana, and A. Boaro
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Neurology. Diseases of the nervous system ,RC346-429 - Published
- 2021
- Full Text
- View/download PDF
29. Environmental variability supports chimpanzee behavioural diversity
- Author
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Kalan, Ammie K., Kulik, Lars, Arandjelovic, Mimi, Boesch, Christophe, Haas, Fabian, Dieguez, Paula, Barratt, Christopher D., Abwe, Ekwoge E., Agbor, Anthony, Angedakin, Samuel, Aubert, Floris, Ayimisin, Emmanuel Ayuk, Bailey, Emma, Bessone, Mattia, Brazzola, Gregory, Buh, Valentine Ebua, Chancellor, Rebecca, Cohen, Heather, Coupland, Charlotte, Curran, Bryan, Danquah, Emmanuel, Deschner, Tobias, Dowd, Dervla, Eno-Nku, Manasseh, Michael Fay, J., Goedmakers, Annemarie, Granjon, Anne-Céline, Head, Josephine, Hedwig, Daniela, Hermans, Veerle, Jeffery, Kathryn J., Jones, Sorrel, Junker, Jessica, Kadam, Parag, Kambi, Mohamed, Kienast, Ivonne, Kujirakwinja, Deo, Langergraber, Kevin E., Lapuente, Juan, Larson, Bradley, Lee, Kevin C., Leinert, Vera, Llana, Manuel, Marrocoli, Sergio, Meier, Amelia C., Morgan, Bethan, Morgan, David, Neil, Emily, Nicholl, Sonia, Normand, Emmanuelle, Ormsby, Lucy Jayne, Pacheco, Liliana, Piel, Alex, Preece, Jodie, Robbins, Martha M., Rundus, Aaron, Sanz, Crickette, Sommer, Volker, Stewart, Fiona, Tagg, Nikki, Tennie, Claudio, Vergnes, Virginie, Welsh, Adam, Wessling, Erin G., Willie, Jacob, Wittig, Roman M., Yuh, Yisa Ginath, Zuberbühler, Klaus, and Kühl, Hjalmar S.
- Published
- 2020
- Full Text
- View/download PDF
30. Characteristics of Positive Deviants in Western Chimpanzee Populations
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Stefanie Heinicke, Roger Mundry, Christophe Boesch, Bala Amarasekaran, Abdulai Barrie, Terry Brncic, David Brugière, Geneviève Campbell, Joana Carvalho, Emmanuel Danquah, Dervla Dowd, Henk Eshuis, Marie-Claire Fleury-Brugière, Joel Gamys, Jessica Ganas, Sylvain Gatti, Laura Ginn, Annemarie Goedmakers, Nicolas Granier, Ilka Herbinger, Annika Hillers, Sorrel Jones, Jessica Junker, Célestin Y. Kouakou, Vincent Lapeyre, Vera Leinert, Sergio Marrocoli, Mary Molokwu-Odozi, Paul K. N'Goran, Emmanuelle Normand, Liliana Pacheco, Sébastien Regnaut, Tenekwetche Sop, Els Ton, Joost van Schijndel, Elleni Vendras, Virginie Vergnes, Adam Welsh, Erin G. Wessling, and Hjalmar S. Kühl
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behavioral change ,conservation planning ,hunting ,mimicking ,positive deviance ,West Africa ,Evolution ,QH359-425 ,Ecology ,QH540-549.5 - Abstract
With continued expansion of anthropogenically modified landscapes, the proximity between humans and wildlife is continuing to increase, frequently resulting in species decline. Occasionally however, species are able to persist and there is an increased interest in understanding such positive outliers and underlying mechanisms. Eventually, such insights can inform the design of effective conservation interventions by mimicking aspects of the social-ecological conditions found in areas of species persistence. Recently, frameworks have been developed to study the heterogeneity of species persistence across populations with a focus on positive outliers. Applications are still rare, and to our knowledge this is one of the first studies using this approach for terrestrial species conservation. We applied the positive deviance concept to the western chimpanzee, which occurs in a variety of social-ecological landscapes. It is now categorized as Critically Endangered due to hunting and habitat loss and resulting excessive decline of most of its populations. Here we are interested in understanding why some of the populations did not decline. We compiled a dataset of 17,109 chimpanzee survey transects (10,929 km) across nine countries and linked them to a range of social and ecological variables. We found that chimpanzees seemed to persist within three social-ecological configurations: first, rainforest habitats with a low degree of human impact, second, steep areas, and third, areas with high prevalence of hunting taboos and low degree of human impact. The largest chimpanzee populations are nowadays found under the third social-ecological configuration, even though most of these areas are not officially protected. Most commonly chimpanzee conservation has been based on exclusion of threats by creation of protected areas and law enforcement. Our findings suggest, however, that this approach should be complemented by an additional focus on threat reduction, i.e., interventions that directly target individual human behavior that is most threatening to chimpanzees, which is hunting. Although changing human behavior is difficult, stakeholder co-designed behavioral change approaches developed in the social sciences have been used successfully to promote pro-environmental behavior. With only a fraction of chimpanzees and primates living inside protected areas, such new approaches might be a way forward to improve primate conservation.
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- 2019
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31. Author Correction: Environmental variability supports chimpanzee behavioural diversity
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Ammie K. Kalan, Lars Kulik, Mimi Arandjelovic, Christophe Boesch, Fabian Haas, Paula Dieguez, Christopher D. Barratt, Ekwoge E. Abwe, Anthony Agbor, Samuel Angedakin, Floris Aubert, Emmanuel Ayuk Ayimisin, Emma Bailey, Mattia Bessone, Gregory Brazzola, Valentine Ebua Buh, Rebecca Chancellor, Heather Cohen, Charlotte Coupland, Bryan Curran, Emmanuel Danquah, Tobias Deschner, Dervla Dowd, Manasseh Eno-Nku, J. Michael Fay, Annemarie Goedmakers, Anne-Céline Granjon, Josephine Head, Daniela Hedwig, Veerle Hermans, Kathryn J. Jeffery, Sorrel Jones, Jessica Junker, Parag Kadam, Mohamed Kambi, Ivonne Kienast, Deo Kujirakwinja, Kevin E. Langergraber, Juan Lapuente, Bradley Larson, Kevin C. Lee, Vera Leinert, Manuel Llana, Sergio Marrocoli, Amelia C. Meier, Bethan Morgan, David Morgan, Emily Neil, Sonia Nicholl, Emmanuelle Normand, Lucy Jayne Ormsby, Liliana Pacheco, Alex Piel, Jodie Preece, Martha M. Robbins, Aaron Rundus, Crickette Sanz, Volker Sommer, Fiona Stewart, Nikki Tagg, Claudio Tennie, Virginie Vergnes, Adam Welsh, Erin G. Wessling, Jacob Willie, Roman M. Wittig, Yisa Ginath Yuh, Klaus Zuberbühler, and Hjalmar S. Kühl
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Science - Abstract
A Correction to this paper has been published: https://doi.org/10.1038/s41467-021-21010-z.
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- 2021
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32. p65BTK is a novel potential actionable target in KRAS-mutated/EGFR-wild type lung adenocarcinoma
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Giordano, Federica, Vaira, Valentina, Cortinovis, Diego, Bonomo, Sara, Goedmakers, Joyce, Brena, Federica, Cialdella, Annamaria, Ianzano, Leonarda, Forno, Irene, Cerrito, Maria Grazia, Giovannoni, Roberto, Ferri, Gian Luca, Tasciotti, Ennio, Vicent, Silve, Damarco, Francesco, Bosari, Silvano, Lavitrano, Marialuisa, and Grassilli, Emanuela
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- 2019
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33. “LMIC authorship in global reconstructive surgery: A bibliometric analysis”
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Wu, Catherine A., primary, Dey, Tanujit, additional, Ho, Isabella, additional, Goedmakers, Caroline, additional, Helliwell, Lydia, additional, Pusic, Andrea, additional, Singhal, Maneesh, additional, Saha, Shivangi, additional, and Ranganathan, Kavitha, additional
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- 2023
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34. Deep Learning on Preoperative Radiographs for Clinical Success Prediction after Surgery for Cervical Degenerative Disease
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Goedmakers, Caroline, primary, Pereboom, Leonie, additional, de Leeuw den Bouter, Merel, additional, Remis, Rob, additional, Staring, Marius, additional, and Vleggeert-Lankamp, Carmen, additional
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- 2023
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35. Persistent anthrax as a major driver of wildlife mortality in a tropical rainforest
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Hoffmann, Constanze, Zimmermann, Fee, Biek, Roman, Kuehl, Hjalmar, Nowak, Kathrin, Mundry, Roger, Agbor, Anthony, Angedakin, Samuel, Arandjelovic, Mimi, Blankenburg, Anja, Brazolla, Gregory, Corogenes, Katherine, Couacy-Hymann, Emmanuel, Deschner, Tobias, Dieguez, Paula, Dierks, Karsten, Dx, Ariane, Dupke, Susann, Eshuis, Henk, Formenty, Pierre, Yuh, Yisa Ginath, Goedmakers, Annemarie, Gogarten, Jan F., Granjon, Anne-Cline, McGraw, Scott, Grunow, Roland, Hart, John, Jones, Sorrel, Junker, Jessica, Kiang, John, Langergraber, Kevin, Lapuente, Juan, Lee, Kevin, Leendertz, Siv Aina, Lguillon, Floraine, Leinert, Vera, Lhrich, Therese, Marrocoli, Sergio, Mtz-Rensing, Kerstin, Meier, Amelia, Merkel, Kevin, Metzger, Sonja, Murai, Mizuki, Niedorf, Svenja, De Nys, Hlne, Sachse, Andreas, van Schijndel, Joost, Thiesen, Ulla, Ton, Els, Wu, Doris, Wieler, Lothar H., Boesch, Christophe, Klee, Silke R., Wittig, Roman M., Calvignac-Spencer, Sbastien, and Leendertz, Fabian H.
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Anthrax -- Environmental aspects ,Animal populations -- Environmental aspects -- Health aspects ,Rain forests -- Environmental aspects -- Health aspects ,Environmental issues ,Science and technology ,Zoology and wildlife conservation - Abstract
Author(s): Constanze Hoffmann [1]; Fee Zimmermann [1, 2]; Roman Biek [3]; Hjalmar Kuehl [4]; Kathrin Nowak [1]; Roger Mundry [4]; Anthony Agbor [4]; Samuel Angedakin [4]; Mimi Arandjelovic [4]; Anja [...]
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- 2017
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36. The impact of mental health on outcome after anterior cervical discectomy: cohort study assessing the influence of mental health using predictive modelling
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Caroline M. W. Goedmakers, Ilse van Beelen, Floor Komen, Erik W. van Zwet, Wilco C. Peul, Mark P. Arts, and Carmen L. A. Vleggeert-Lankamp
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Depression ,Neck disability index ,Cervical discectomy ,Outcome prediction ,Anxiety ,Cohort Studies ,Spinal Fusion ,Treatment Outcome ,Radicular pain ,Cervical Vertebrae ,Humans ,Surgery ,Mental health ,Neurology (clinical) ,Diskectomy ,Cervical radiculopathy - Abstract
Background Depression and anxiety are common mental disorders among patients with chronic pain. It is hypothesised that patients suffering from these disorders benefit less from cervical spine surgery than mentally healthy patients. Therefore, this study aimed to quantify the effect of mental health status on functional outcome after anterior cervical discectomy in a post hoc analysis on RCT data. Methods One hundred eight patients from the NECK trial, with radiculopathy due to a one-level herniated disc, underwent anterior cervical discectomy and were included into this analysis. Functional outcome was quantified using the Neck Disability Index (NDI), and mental health status was measured using the Hospital Anxiety and Depression Score (HADS) questionnaire. NDI differences were assessed using generalised estimated equations (GEE), crude means, a predictive linear mixed model (LMM) using baseline scores and over time with an explanatory LMM. Results At baseline, 24% and 32% of patients were respectively depressed and anxious and had statistically significant and clinically relevant higher NDI scores during follow-up. However, in those patients in which the HADS returned to normal during follow-up, NDI values decreased comparably to the non-depression or non-anxiety cases. Those patients that demonstrated persisting high HADS values had convincingly worse NDI scores. A predictive LMM showed that combining baseline NDI and HADS scores was highly predictive of NDI during follow-up. The R shiny application enabled the effective, visual communication of results from the predictive LMM. Conclusion This study shows that mental health status and disability are strongly associated and provides insight into the size of the effect, as well as a way to use this relation to improve preoperative patient counselling. These findings give rise to the suggestion that incorporating mental health screening in the preoperative assessment of patients could help to adequately manage patients’ expectations for functional recovery. Trial registration Dutch Trial Register Number: NTR1289
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- 2022
37. Long-term results of the NECK trial: implanting a disc prosthesis after cervical anterior discectomy cannot prevent adjacent segment disease. 5-years clinical follow-up of a double-blinded randomised controlled trial
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Caroline M W, Goedmakers, Floor, de Vries, Lisette, Bosscher, Wilco C, Peul, Mark P, Arts, and Carmen L A, Vleggeert-Lankamp
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Motion preserving anterior cervical disc arthroplasty (ACDA) in patients with cervical radiculopathy was introduced to prevent symptomatic adjacent segment disease as compared to anterior cervical discectomy and fusion (ACDF).To evaluate the long-term outcome in patients with cervical radiculopathy due to a herniated disc undergoing ACDA, ACDF or ACD (no cage, no plate) in terms of clinical outcome measured by the Neck Disability Index (NDI). Likewise, clinically relevant adjacent segment disease is assessed as a long-term result.Double-blinded randomized controlled trial.A total of 109 patients with one level herniated disc were randomized to one of the following treatments: ACDA, ACDF with intervertebral cage, ACD without cage.Clinical outcome was measured by patients' self-reported NDI, Visual Analogue Scale (VAS) neck pain, VAS arm pain, SF36, EQ-5D, perceived recovery and reoperation rate. Radiological outcome was assessed by radiographic cervical curvature and adjacent segment degeneration (ASD) parameters at baseline and up until five years after surgery.To account for the correlation between repeated measurements of the same individual Generalized Estimated Equations (GEE) were used to calculate treatment effects, expressed in difference in marginal mean values for NDI per treatment group.Clinical outcome parameters were comparable in the ACDA and ACDF group, but significantly worse in the ACD group, though not reaching clinical relevance. Annual reoperation rate was 3.6% in the first two years after surgery, declined to 1.9% in the years thereafter. The number of reoperations for ASD was not lower in the ACDA group, while the number of reoperations at the index level was higher after ACD, when compared to ACDF and ACDA.A persisting absence of clinical superiority was demonstrated for the cervical disc prosthesis five years after surgery. Specifically, clinically relevant adjacent level disease was not prevented by implanting a prosthesis. Single level ACD without implanting an intervertebral device provided worse clinical outcome, which was hypothesized to be caused by delayed fusion. This stresses the need for focusing on timely fusion in future research.
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- 2022
38. Advancing conservation planning for western chimpanzees using IUCN SSC A.P.E.S.—the case of a taxon-specific database
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Stefanie Heinicke, Roger Mundry, Christophe Boesch, Bala Amarasekaran, Abdulai Barrie, Terry Brncic, David Brugière, Geneviève Campbell, Joana Carvalho, Emmanuel Danquah, Dervla Dowd, Henk Eshuis, Marie-Claire Fleury-Brugière, Joel Gamys, Jessica Ganas, Sylvain Gatti, Laura Ginn, Annemarie Goedmakers, Nicolas Granier, Ilka Herbinger, Annika Hillers, Sorrel Jones, Jessica Junker, Célestin Y Kouakou, Vincent Lapeyre, Vera Leinert, Fiona Maisels, Sergio Marrocoli, Mary Molokwu-Odozi, Paul K N’Goran, Liliana Pacheco, Sébastien Regnaut, Tenekwetche Sop, Els Ton, Joost van Schijndel, Virginie Vergnes, Maria Voigt, Adam Welsh, Erin G Wessling, Elizabeth A Williamson, and Hjalmar S Kühl
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species distribution model ,Pan troglodytes verus ,development corridor ,West Africa ,Environmental technology. Sanitary engineering ,TD1-1066 ,Environmental sciences ,GE1-350 ,Science ,Physics ,QC1-999 - Abstract
Even though information on global biodiversity trends becomes increasingly available, large taxonomic and spatial data gaps persist at the scale relevant to planning conservation interventions. This is because data collectors are hesitant to share data with global repositories due to workload, lack of incentives, and perceived risk of losing intellectual property rights. In contrast, due to greater conceptual and methodological proximity, taxon-specific database initiatives can provide more direct benefits to data collectors through research collaborations and shared authorship. The IUCN SSC Ape Populations, Environments and Surveys (A.P.E.S.) database was created in 2005 as a repository for data on great apes and other primate taxa. It aims to acquire field survey data and make different types of data accessible, and provide up-to-date species status information. To support the current update of the conservation action plan for western chimpanzees ( Pan troglodytes verus ) we compiled field surveys for this taxon from IUCN SSC A.P.E.S., 75% of which were unpublished. We used spatial modeling to infer total population size, range-wide density distribution, population connectivity and landscape-scale metrics. We estimated a total abundance of 52 800 (95% CI 17 577–96 564) western chimpanzees, of which only 17% occurred in national parks. We also found that 10% of chimpanzees live within 25 km of four multi-national ‘development corridors’ currently planned for West Africa. These large infrastructure projects aim to promote economic integration and agriculture expansion, but are likely to cause further habitat loss and reduce population connectivity. We close by demonstrating the wealth of conservation-relevant information derivable from a taxon-specific database like IUCN SSC A.P.E.S. and propose that a network of many more such databases could be created to provide the essential information to conservation that can neither be supplied by one-off projects nor by global repositories, and thus are highly complementary to existing initiatives.
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- 2019
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39. Corrigendum to ‘Criteria for success after surgery for cervical radiculopathy—estimates for a substantial amount of improvement in core outcome measures’ by Christer Mjåset et al’ [The Spine Journal 20/9 (2020) 1413-1421]
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Mjåset, Christer, Zwart, John-Anker, Goedmakers, Caroline M.W., Smith, Timothy R., Solberg, Tore K., and Grotle, Margreth
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- 2024
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40. Single- versus Dual-Attending Surgeon Approach for Spine Deformity: A Systematic Review and Meta-Analysis
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Timothy R. Smith, Linda S. Aglio, Asad M Lak, Abdullah M. Abunimer, Hasan A. Zaidi, Caroline M.W. Goedmakers, Melvin C. Makhni, and Rania A. Mekary
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Adult ,medicine.medical_specialty ,Adolescent ,MEDLINE ,Subgroup analysis ,Scoliosis ,03 medical and health sciences ,0302 clinical medicine ,Spine deformity ,Deformity ,medicine ,Humans ,Kyphosis ,Retrospective Studies ,Surgeons ,030222 orthopedics ,business.industry ,medicine.disease ,Surgery ,Spinal Fusion ,Meta-analysis ,Cohort ,Neurology (clinical) ,medicine.symptom ,business ,030217 neurology & neurosurgery ,Cohort study - Abstract
BACKGROUND Surgical management of spine deformity is associated with significant morbidity. Recent literature has inconsistently demonstrated better outcomes after utilizing 2 attending surgeons for spine deformity. OBJECTIVE To conduct a systematic review and meta-analysis on studies reporting outcomes following single- vs dual-attending surgeons for spine deformity. METHODS MEDLINE, Embase, Web of science, and Cochrane databases were last searched on July 16, 2020. A total of 1013 records were identified excluding duplicates. After screening, 10 studies (4 cohort, 6 case series) were included in the meta-analysis. Random-effect models were used to pool the effect estimates by study design. When feasible, further subgroup analysis by deformity type was conducted. RESULTS A total of 953 patients were analyzed. Pooled results from propensity score-matched cohort studies revealed that the single-surgeon approach was unfavorably associated with a nonstatistically significant higher blood loss (mean difference = 421.0 mL; 95% CI: -28.2, 870.2), a statistically significant higher operative time (mean difference = 94.3 min; 95% CI: 54.9, 133), length of stay (mean difference = 0.84 d; 95% CI: 0.46, 1.22), and an increased risk of complications (Mantel-Haenszel risk ratio = 2.93; 95% CI: 1.12, 7.66). Data from pooled case series demonstrated similar results for all outcomes. Moreover, these results did not differ significantly between deformity types (adolescent idiopathic scoliosis and adult spinal deformity). CONCLUSION Dual-attending surgeon approach appeared to be associated with reduced operative time, shorter hospital stays, and reduced risk of complications. These findings may potentially improve outcomes in surgical treatment of spine deformity.
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- 2020
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41. The Clinical Relevance of the Cervical Disc Prosthesis Combining Clinical Results of Two RCTs
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Goedmakers, C.M.W., Bartels, R.H.M.A., Donk, R.D., Arts, M.P., Zwet, Erik W. van, Vleggeert-Lankamp, C.L., Goedmakers, C.M.W., Bartels, R.H.M.A., Donk, R.D., Arts, M.P., Zwet, Erik W. van, and Vleggeert-Lankamp, C.L.
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Item does not contain fulltext
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- 2022
42. Machine learning for image analysis in the cervical spine: Systematic review of the available models and methods
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Goedmakers, C.M.W. (author), Pereboom, L. M. (author), Schoones, J. W. (author), de Leeuw den Bouter, M.L. (author), Remis, R.F. (author), Staring, M. (author), Vleggeert-Lankamp, C. L.A. (author), Goedmakers, C.M.W. (author), Pereboom, L. M. (author), Schoones, J. W. (author), de Leeuw den Bouter, M.L. (author), Remis, R.F. (author), Staring, M. (author), and Vleggeert-Lankamp, C. L.A. (author)
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Numerical Analysis, Tera-Hertz Sensing, Pattern Recognition and Bioinformatics
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- 2022
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43. Population dynamics and genetic connectivity in recent chimpanzee history
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Fundación la Caixa, Ministerio de Ciencia, Innovación y Universidades (España), Ministerio de Economía y Competitividad (España), European Commission, Vienna Science and Technology Fund, European Research Council, Howard Hughes Medical Institute, Generalitat de Catalunya, Wellcome Trust Centre for Human Genetics, Max Planck Society, Heinz L. Krekeler Foundation, Fontsere, Claudia, Kuhlwilm, Martin, Morcillo-Suárez, Carlos, Alvarez-Estape, Marina, Lester, Jack D., Gratton, Paolo, Schmidt, Joshua M., Dieguez, Paula, Aebischer, Thierry, Álvarez-Varona, Paula, Agbor, Anthony, Angedakin, Samuel, Assumang, Alfred K., Ayimisin, Emmanuel Ayuk, Bailey, Emma, Barubiyo, Donatienne, Bessone, Mattia, Carretero-Alonso, Andrea, Chancellor, Rebecca, Cohen, Heather, Danquah, Emmanuel, Deschner, Tobias, Dunn, Andrew, Dupain, Jef, Egbe, Villard E., Feliú, Olga, Goedmakers, Annemarie, Granjon, Anne‐Céline, Head, Josephine, Hedwig, Daniela, Hermans, Veerle, Hernandez-Aguilar, R. Adriana, Imong, Inaoyom, Jones, Sorrel, Junker, Jessica, Kadam, Parag, Kaiser, Mike, Kambere, Mbangi, Kambale, Magloire V., Kalan, Ammie K., Kienast, Ivonne, Kujirakwinja, Deo, Langergraber, Kevin E., Lapuente, Juan, Larson, Bradley, Laudisoit, Anne, Lee, Kevin, Llana, Manuel, Llorente, Miquel, Marrocol, iSergio, Morgan, David, Mulindahabi, Felix, Murai, Mizuki, Neil, Emily, Nicholl, Sonia, Nixon, Stuart, Normand, Emma, Orbell, Chris, Ormsby, Lucy Jayne, Pacheco, Liliana, Piel, Alex, Riera, Laura, Robbins, Martha M., Rundus, Aaron, Sanz, Crickette, Sciaky, Lilah, Sommer, Volker, Stewart, Fiona, Tagg, Nikki, Tédonzong, Luc Roscelin, Ton, Els, van Schijndel, Joost, Vergnes, Virginie, Wessling, Erin G., Willie, Jacob, Wittig, Roman M., Yuh, Yisa G., Yurkiw, Kyle, Zuberbuehler, Klaus, Hecht, Jochen, Vigilant, Linda, Boesch, Christophe, Andrés, Aida M., Hughes, David A., Kühl, Hjalmar, Lizano, Esther, Arandjelovic, Mimi, Marqués-Bonet, Tomàs, Fundación la Caixa, Ministerio de Ciencia, Innovación y Universidades (España), Ministerio de Economía y Competitividad (España), European Commission, Vienna Science and Technology Fund, European Research Council, Howard Hughes Medical Institute, Generalitat de Catalunya, Wellcome Trust Centre for Human Genetics, Max Planck Society, Heinz L. Krekeler Foundation, Fontsere, Claudia, Kuhlwilm, Martin, Morcillo-Suárez, Carlos, Alvarez-Estape, Marina, Lester, Jack D., Gratton, Paolo, Schmidt, Joshua M., Dieguez, Paula, Aebischer, Thierry, Álvarez-Varona, Paula, Agbor, Anthony, Angedakin, Samuel, Assumang, Alfred K., Ayimisin, Emmanuel Ayuk, Bailey, Emma, Barubiyo, Donatienne, Bessone, Mattia, Carretero-Alonso, Andrea, Chancellor, Rebecca, Cohen, Heather, Danquah, Emmanuel, Deschner, Tobias, Dunn, Andrew, Dupain, Jef, Egbe, Villard E., Feliú, Olga, Goedmakers, Annemarie, Granjon, Anne‐Céline, Head, Josephine, Hedwig, Daniela, Hermans, Veerle, Hernandez-Aguilar, R. Adriana, Imong, Inaoyom, Jones, Sorrel, Junker, Jessica, Kadam, Parag, Kaiser, Mike, Kambere, Mbangi, Kambale, Magloire V., Kalan, Ammie K., Kienast, Ivonne, Kujirakwinja, Deo, Langergraber, Kevin E., Lapuente, Juan, Larson, Bradley, Laudisoit, Anne, Lee, Kevin, Llana, Manuel, Llorente, Miquel, Marrocol, iSergio, Morgan, David, Mulindahabi, Felix, Murai, Mizuki, Neil, Emily, Nicholl, Sonia, Nixon, Stuart, Normand, Emma, Orbell, Chris, Ormsby, Lucy Jayne, Pacheco, Liliana, Piel, Alex, Riera, Laura, Robbins, Martha M., Rundus, Aaron, Sanz, Crickette, Sciaky, Lilah, Sommer, Volker, Stewart, Fiona, Tagg, Nikki, Tédonzong, Luc Roscelin, Ton, Els, van Schijndel, Joost, Vergnes, Virginie, Wessling, Erin G., Willie, Jacob, Wittig, Roman M., Yuh, Yisa G., Yurkiw, Kyle, Zuberbuehler, Klaus, Hecht, Jochen, Vigilant, Linda, Boesch, Christophe, Andrés, Aida M., Hughes, David A., Kühl, Hjalmar, Lizano, Esther, Arandjelovic, Mimi, and Marqués-Bonet, Tomàs
- Abstract
Knowledge on the population history of endangered species is critical for conservation, but whole-genome data on chimpanzees (Pan troglodytes) is geographically sparse. Here, we produced the first non-invasive geolocalized catalog of genomic diversity by capturing chromosome 21 from 828 non-invasive samples collected at 48 sampling sites across Africa. The four recognized subspecies show clear genetic differentiation correlating with known barriers, while previously undescribed genetic exchange suggests that these have been permeable on a local scale. We obtained a detailed reconstruction of population stratification and fine-scale patterns of isolation, migration, and connectivity, including a comprehensive picture of admixture with bonobos (Pan paniscus). Unlike humans, chimpanzees did not experience extended episodes of long-distance migrations, which might have limited cultural transmission. Finally, based on local rare variation, we implement a fine-grained geolocalization approach demonstrating improved precision in determining the origin of confiscated chimpanzees.
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- 2022
44. p65BTK is a novel potential actionable target in KRAS-mutated/EGFR-wild type lung adenocarcinoma
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Roberto Giovannoni, Diego Cortinovis, Sara Bonomo, Silvano Bosari, Annamaria Cialdella, Irene Forno, Leonarda Ianzano, Gian-Luca Ferri, Emanuela Grassilli, Federica Brena, Maria Grazia Cerrito, Valentina Vaira, F. Damarco, Ennio Tasciotti, Silve Vicent, Federica Giordano, Marialuisa Lavitrano, Joyce Goedmakers, Giordano, F, Vaira, V, Cortinovis, D, Bonomo, S, Goedmakers, J, Brena, F, Cialdella, A, Ianzano, L, Forno, I, Cerrito, M, Giovannoni, R, Ferri, G, Tasciotti, E, Vicent, S, Damarco, F, Bosari, S, Lavitrano, M, and Grassilli, E
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0301 basic medicine ,Cancer Research ,medicine.medical_treatment ,Gene Expression ,medicine.disease_cause ,NSCLC ,Targeted therapy ,Mice ,0302 clinical medicine ,Agammaglobulinaemia Tyrosine Kinase ,Protein Isoforms ,EGFR inhibitors ,BTK inhibitor ,Drug Synergism ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Immunohistochemistry ,3. Good health ,ErbB Receptors ,Gene Expression Regulation, Neoplastic ,EGFR inhibitor ,Pemetrexed ,Oncology ,030220 oncology & carcinogenesis ,Erlotinib ,KRAS ,Ciencias de la Salud::Oncología [Materias Investigacion] ,medicine.drug ,Signal Transduction ,Cell Survival ,EGFR ,Adenocarcinoma of Lung ,Antineoplastic Agents ,lcsh:RC254-282 ,Proto-Oncogene Proteins p21(ras) ,03 medical and health sciences ,Gefitinib ,Cell Line, Tumor ,medicine ,Biomarkers, Tumor ,Animals ,Humans ,Chemotherapy ,Lung cancer ,Protein Kinase Inhibitors ,Cell Proliferation ,Neoplasm Staging ,business.industry ,Research ,Cancer ,medicine.disease ,respiratory tract diseases ,BTK inhibitors ,030104 developmental biology ,Drug resistance ,p65BTK ,Mutation ,Cancer research ,business - Abstract
Background Lung cancer is still the main cause of cancer death worldwide despite the availability of targeted therapies and immune-checkpoint inhibitors combined with chemotherapy. Cancer cell heterogeneity and primary or acquired resistance mechanisms cause the elusive behaviour of this cancer and new biomarkers and active drugs are urgently needed to overcome these limitations. p65BTK, a novel isoform of the Bruton Tyrosine Kinase may represent a new actionable target in non-small cell lung cancer (NSCLC). Methods p65BTK expression was evaluated by immunohistochemistry in 382 NSCLC patients with complete clinico-pathological records including smoking habit, ALK and EGFR status, and in metastatic lymph nodes of 30 NSCLC patients. NSCLC cell lines mutated for p53 and/or a component of the RAS/MAPK pathway and primary lung cancer-derived cells from Kras/Trp53 null mice were used as a preclinical model. The effects of p65BTK inhibition by BTK Tyrosine Kinase Inhibitors (TKIs) (Ibrutinib, AVL-292, RN486) and first-generation EGFR-TKIs (Gefitinib, Erlotinib) on cell viability were evaluated by MTT. The effects of BTK-TKIs on cell growth and clonogenicity were assessed by crystal violet and colony assays, respectively. Cell toxicity assays were performed to study the effect of the combination of non-toxic concentrations of BTK-TKIs with EGFR-TKIs and standard-of-care (SOC) chemotherapy (Cisplatin, Gemcitabine, Pemetrexed). Results p65BTK was significantly over-expressed in EGFR-wild type (wt) adenocarcinomas (AdC) from non-smoker patients and its expression was also preserved at the metastatic site. p65BTK was also over-expressed in cell lines mutated for KRAS or for a component of the RAS/MAPK pathway and in tumors from Kras/Trp53 null mice. BTK-TKIs were more effective than EGFR-TKIs in decreasing cancer cell viability and significantly impaired cell proliferation and clonogenicity. Moreover, non-toxic doses of BTK-TKIs re-sensitized drug-resistant NSCLC cell lines to both target- and SOC therapy, independently from EGFR/KRAS status. Conclusions p65BTK results as an emerging actionable target in non-smoking EGFR-wt AdC, also at advanced stages of disease. Notably, these patients are not eligible for EGFR-TKIs-based therapy due to a lack of EGFR mutation. The combination of BTK-TKIs with EGFR-TKIs is cytotoxic for EGFR-wt/KRAS-mutant/p53-null tumors and BTK-TKIs re-sensitizes drug-resistant NSCLC to SOC chemotherapy. Therefore, our data suggest that adding BTK-TKIs to SOC chemotherapy and EGFR-targeted therapy may open new avenues for clinical trials in currently untreatable NSCLC. Electronic supplementary material The online version of this article (10.1186/s13046-019-1199-7) contains supplementary material, which is available to authorized users.
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- 2019
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45. Criteria for success after surgery for cervical radiculopathy—estimates for a substantial amount of improvement in core outcome measures
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Timothy R. Smith, John-Anker Zwart, Tore Solberg, Caroline M.W. Goedmakers, Christer Mjåset, and Margreth Grotle
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medicine.medical_specialty ,Numerical rating scale ,Numerical rating scales ,Context (language use) ,Prom ,Health-related life quality ,03 medical and health sciences ,Cervical radiculopathy ,0302 clinical medicine ,Success criteria ,Outcome Assessment, Health Care ,Cervical disc herniation ,Numeric Rating Scale ,Humans ,Medicine ,EuroQol ,Orthopedics and Sports Medicine ,Prospective Studies ,Radiculopathy ,Prospective cohort study ,030222 orthopedics ,Core (anatomy) ,Neck pain ,Cervical degenerative radiculopathy ,Norway ,business.industry ,Neck disability index ,VDP::Medisinske Fag: 700::Basale medisinske, odontologiske og veterinærmedisinske fag: 710 ,Spondylotic foraminal stenosis ,Patient reported outcome measures ,VDP::Medical disciplines: 700::Basic medical, dental and veterinary science disciplines: 710 ,Surgery ,Treatment Outcome ,Patient-reported outcome measures ,Cervical Vertebrae ,Cohort studies ,NECK Disability Index ,Neurology (clinical) ,medicine.symptom ,Cohort study ,business ,030217 neurology & neurosurgery - Abstract
Background context - Defining clinically meaningful success criteria from patient-reported outcome measures (PROMs) is crucial for clinical audits, research and decision-making. Purpose - We aimed to define criteria for a successful outcome 3 and 12 months after surgery for cervical degenerative radiculopathy on recommended PROMs. Study design - Prospective cohort study with 12 months follow-up. Patient sample - Patients operated at one or two levels for cervical radiculopathy included in the Norwegian Registry for Spine Surgery (NORspine) from 2011 to 2016. Outcome measures - Neck disability index (NDI), Numeric Rating Scale for neck pain (NRS-NP) and arm pain (NRS-AP), health-related quality-of-life EuroQol 3L (EQ-5D), general health status (EQ-VAS). Methods - We included 2,868 consecutive cervical degenerative radiculopathy patients operated for cervical radiculopathy in one or two levels and included in the Norwegian Registry for Spine Surgery (NORspine). External criterion to determine accuracy and optimal cut-off values for success in the PROMs was the global perceived effect scale. Success was defined as “much better” or “completely recovered.” Cut-off values were assessed by analyzing the area under the receiver operating curves for follow-up scores, mean change scores, and percentage change scores. Results - All PROMs showed high accuracy in defining success and nonsuccess and only minor differences were found between 3- and 12-month scores. At 12 months, the area under the receiver operating curves for follow-up scores were 0.86 to 0.91, change scores were 0.74 to 0.87, and percentage change scores were 0.74 to 0.91. Percentage scores of NDI and NRS-AP showed the best accuracy. The optimal cut-off values for each PROM showed considerable overlap across those operated due to disc herniation and spondylotic foraminal stenosis. Conclusions - All PROMs, especially NDI and NRS-AP, showed good to excellent discriminative ability in distinguishing between a successful and nonsuccessful outcome after surgery due to cervical radiculopathy. Percentage change scores are recommended for use in research and clinical practice.
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- 2020
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46. The association of cervical sagittal alignment with adjacent segment degeneration
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Xiaoyu Yang, Mark P. Arts, Roland D. Donk, Ronald H. M. A. Bartels, Carmen L.A. Vleggeert-Lankamp, and Caroline M W Goedmakers
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Adjacent segment ,medicine.medical_specialty ,Lordosis ,business.industry ,medicine.medical_treatment ,Degeneration (medical) ,medicine.disease ,Arthroplasty ,Sagittal plane ,Sagittal vertical axis ,Reconstructive and regenerative medicine Radboud Institute for Health Sciences [Radboudumc 10] ,medicine.anatomical_structure ,Radiological weapon ,T1 slope ,Adjacent segment degeneration ,medicine ,Sagittal alignment ,Cervical sagittal alignment ,Orthopedics and Sports Medicine ,Surgery ,Neurosurgery ,Nuclear medicine ,business ,Cervical lordosis - Abstract
Purpose Cervical spine surgery may affect sagittal alignment parameters and induce accelerated degeneration of the cervical spine. Cervical sagittal alignment parameters of surgical patients will be correlated with radiological adjacent segment degeneration (ASD) and with clinical outcome parameters. Methods Patients were analysed from two randomized, double-blinded trials comparing anterior cervical discectomy with arthroplasty (ACDA), with intervertebral cage (ACDF) and without intervertebral cage (ACD). C2–C7 lordosis, T1 slope, C2–C7 sagittal vertical axis (SVA) and the occipito-cervical angle (OCI) were determined as cervical sagittal alignment parameters. Radiological ASD was scored by the combination of decrease in disc height and anterior osteophyte formation. Neck disability index (NDI), SF-36 PCS and MCS were evaluated as clinical outcomes. Results The cervical sagittal alignment parameters were comparable between the three treatment groups, both at baseline and at 2-year follow-up. Irrespective of surgical method, C2–C7 lordosis was found to increase from 11° to 13°, but the other parameters remained stable during follow-up. Only the OCI was demonstrated to be associated with the presence and positive progression of radiological ASD, both at baseline and at 2-year follow-up. NDI, SF-36 PCS and MCS were demonstrated not to be correlated with cervical sagittal alignment. Likewise, a correlation with the value or change of the OCI was absent. Conclusion OCI, an important factor to maintain horizontal gaze, was demonstrated to be associated with radiological ASD, suggesting that the occipito-cervical angle influences accelerated cervical degeneration. Since OCI did not change after surgery, degeneration of the cervical spine may be predicted by the value of OCI. NECK trial Dutch Trial Register Number NTR1289. PROCON trial Trial Register Number ISRCTN41681847. Graphic abstract These slides can be retrieved under Electronic Supplementary Material.
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- 2020
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47. The Clinical Relevance of the Cervical Disc Prosthesis Combining Clinical Results of Two RCTs
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Erik W. van Zwet, Roland D. Donk, Ronald H. M. A. Bartels, Mark P. Arts, Caroline M.W. Goedmakers, and Carmen L.A.M. Vleggeert-Lankamp
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medicine.medical_specialty ,Total Disc Replacement ,medicine.medical_treatment ,cervical radiculopathy ,Anterior cervical discectomy and fusion ,Subgroup analysis ,Intervertebral Disc Degeneration ,cervical spine ,Prosthesis ,All institutes and research themes of the Radboud University Medical Center ,Double-Blind Method ,medicine ,Humans ,neck disability index ,Orthopedics and Sports Medicine ,Clinical significance ,subgroup analysis ,cervical discectomy ,Retrospective Studies ,disc herniation ,business.industry ,Minimal clinically important difference ,Prostheses and Implants ,Arthroplasty ,Confidence interval ,Surgery ,Clinical trial ,Reconstructive and regenerative medicine Radboud Institute for Health Sciences [Radboudumc 10] ,Spinal Fusion ,Treatment Outcome ,Cervical Vertebrae ,arthroplasty ,Neurology (clinical) ,prosthesis ,business ,radicular pain ,Intervertebral Disc Displacement ,fusion surgery ,Diskectomy - Abstract
Study Design. Retrospective analysis was performed on data from 251 patients that were included in two randomized, double-blinded clinical trials comparing clinical results of anterior cervical discectomy and arthroplasty (ACDA) to anterior cervical discectomy and fusion (ACDF), and anterior cervical discectomy (ACD), for single-level disc herniation. Objective. This study aimed to investigate whether the ACDA procedure offers superior clinical results 2 years after surgery, to either ACDF or ACD without instrumentation, in the entire group of patients or in a particular subgroup of patients. Summary of Background Data. The cervical disc prosthesis was introduced to provide superior clinical outcomes after ACD. Methods. Neck Disability Index (NDI), and subscales of the 36-item short-form health survey (SF-36) and McGill pain score were collected at baseline, 1 year and 2 years after surgery. Reoperations and complications were also evaluated. A preliminary subgroup analysis was performed for age, disc height, body mass index (BMI), smoking, and sex. Results. The NDI decreased comparably in all treatment arms to circa 50% of the baseline value and marginal mean NDI differences varied from 0.4 to 1.1 on a 100 point NDI scale, with confidence intervals never exceeding the 20-point minimal clinical important difference (MCID). Secondary outcome parameters showed comparable results. Preliminary subgroup analysis could not demonstrate clinically relevant differences in NDI between treatments after 2 years. Conclusion. After combining data from two Randomized Controlled Trials it can be concluded that there is no clinical benefit for ACDA, when compared with ACDF or ACD 2 years after surgery. Preliminary subgroup analysis indicated outcomes were similar between treatment groups, and that no subgroup could be appointed that benefited more from either ACD, ACDF, or ACDA.
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- 2022
48. Recent genetic connectivity and clinal variation in chimpanzees
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Roman M. Wittig, Vianet Mihindou, Yisa Ginath Yuh, Nikki Tagg, Kevin Lee, Kathryn J. Jeffery, Christopher Orbell, Villard Ebot Egbe, Mimi Arandjelovic, Ammie K. Kalan, Emily Neil, R. Adriana Hernandez-Aguilar, Kevin E. Langergraber, Els Ton, Daniela Hedwig, Anthony Agbor, Laura Kehoe, David Morgan, Linda Vigilant, Fiona A. Stewart, Emma Bailey, Rebecca Chancellor, Tobias Deschner, Annemarie Goedmakers, Alhaji M. Siaka, Anne Laudisoit, Christophe Boesch, Veronika Städele, Heather Cohen, Liliana Pacheco, Hjalmar S. Kühl, Paula Álvarez-Varona, Christopher D. Barratt, Sorrel Jones, Emmanuel Danquah, Sonia Nicholl, Aaron S. Rundus, Lucy Jayne Ormsby, Jacob Willie, Alex K. Piel, Anne-Céline Granjon, Sergio Marrocoli, Emmanuel Ayuk Ayimisin, Jack D. Lester, Jessica Junker, Samuel Angedakin, Maureen S. McCarthy, Magloire Kambale Vyalengerera, Manasseh Eno-Nku, Joost van Schijndel, Parag Kadam, Erin G. Wessling, Gregory Brazzola, Michael Kaiser, Josephine Head, Martha M. Robbins, Geoffrey Muhanguzi, Klaus Zuberbuehler, Crickette M. Sanz, Juan Lapuente, Ivonne Kienast, Paula Dieguez, Paolo Gratton, Mattia Bessone, Lilah Sciaky, Kyle Yurkiw, Lester, Jack D [0000-0002-0390-9792], Vigilant, Linda [0000-0003-4509-1260], Dieguez, Paula [0000-0002-6951-2771], Bessone, Mattia [0000-0002-8066-6413], Goedmakers, Annemarie [0000-0002-6398-4778], Hernandez-Aguilar, R Adriana [0000-0002-9539-8669], Jeffery, Kathryn J [0000-0002-2632-0008], Jones, Sorrel [0000-0002-3579-7254], Kadam, Parag [0000-0002-6534-4205], Kehoe, Laura [0000-0001-6260-7893], Laudisoit, Anne [0000-0001-7626-9426], Neil, Emily [0000-0001-8156-2344], Nicholl, Sonia [0000-0001-8720-2411], Pacheco, Liliana [0000-0001-7085-6064], Sanz, Crickette [0000-0003-2018-2721], Städele, Veronika [0000-0002-5381-2198], Stewart, Fiona [0000-0002-4929-4711], Wittig, Roman M [0000-0001-6490-4031], Yuh, Yisa Ginath [0000-0003-4537-2636], Boesch, Christophe [0000-0001-9538-7858], Kühl, Hjalmar S [0000-0002-4440-9161], Arandjelovic, Mimi [0000-0001-8920-9684], Apollo - University of Cambridge Repository, University of St Andrews. School of Psychology and Neuroscience, University of St Andrews. Institute of Behavioural and Neural Sciences, and University of St Andrews. Centre for Social Learning & Cognitive Evolution
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0106 biological sciences ,Classification and taxonomy ,Medicine (miscellaneous) ,Evolutionary biology ,Subspecies ,Evolutionary ecology ,01 natural sciences ,Gene flow ,Biology (General) ,Phylogeny ,0303 health sciences ,education.field_of_study ,Habitat fragmentation ,Behavior, Animal ,Genetic structure ,General Agricultural and Biological Sciences ,Engineering sciences. Technology ,Settore BIO/05 ,BF Psychology ,Pan troglodytes ,QH301-705.5 ,Population ,NDAS ,BF ,Biology ,010603 evolutionary biology ,General Biochemistry, Genetics and Molecular Biology ,Article ,Evolution, Molecular ,03 medical and health sciences ,QH301 ,Genome Components ,Species Specificity ,Animals ,Genotyping and haplotyping ,education ,Ecosystem ,030304 developmental biology ,Isolation by distance ,Genetic diversity ,QL ,QH ,Genetic Variation ,Genetics, Population ,Animal Migration ,Gene-Environment Interaction ,Structural variation ,Human medicine ,Microsatellite Repeats - Abstract
Funder: Max-Planck-Gesellschaft (Max Planck Society); doi: https://doi.org/10.13039/501100004189, Funder: Max Planck Society Innovation Fund Heinz L. Krekeler Foundation, Much like humans, chimpanzees occupy diverse habitats and exhibit extensive behavioural variability. However, chimpanzees are recognized as a discontinuous species, with four subspecies separated by historical geographic barriers. Nevertheless, their range-wide degree of genetic connectivity remains poorly resolved, mainly due to sampling limitations. By analyzing a geographically comprehensive sample set amplified at microsatellite markers that inform recent population history, we found that isolation by distance explains most of the range-wide genetic structure of chimpanzees. Furthermore, we did not identify spatial discontinuities corresponding with the recognized subspecies, suggesting that some of the subspecies-delineating geographic barriers were recently permeable to gene flow. Substantial range-wide genetic connectivity is consistent with the hypothesis that behavioural flexibility is a salient driver of chimpanzee responses to changing environmental conditions. Finally, our observation of strong local differentiation associated with recent anthropogenic pressures portends future loss of critical genetic diversity if habitat fragmentation and population isolation continue unabated.
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- 2021
49. Deep Learning for Adjacent Segment Disease at Preoperative MRI for Cervical Radiculopathy
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Goedmakers, Caroline M. W., primary, Lak, Asad M., additional, Duey, Akiro H., additional, Senko, Alexander W., additional, Arnaout, Omar, additional, Groff, Michael W., additional, Smith, Timothy R., additional, Vleggeert-Lankamp, Carmen L. A., additional, Zaidi, Hasan A., additional, Rana, Aakanksha, additional, and Boaro, Alessandro, additional
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- 2021
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50. Quantitative estimates of glacial refugia for chimpanzees (Pan troglodytes) since the Last Interglacial (120,000 BP)
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Kevin Lee, Christopher Orbell, David Morgan, Anne Laudisoit, Hjalmar S. Kühl, Annemarie Goedmakers, Alfred Kwabena Assumang, Crickette M. Sanz, Aaron S. Rundus, Tenekwetsche Sop, Angelique Todd, Jessica Junker, Elleni Vendras, Emily Neil, Juan Lapuente, Milica Arandjelovic, Tobias Deschner, Linda Vigilant, Christophe Boesch, Gaëlle Bocksberger, Andrew J. Plumptre, Anh Galat-Luong, Nikki Tagg, Lilian Pintea, Barrie Abdulai, Osiris A. Doumbé, Anne Ntongho, Liliana Pacheco, Louis Nkembi, Dismas Hakizimana, Zacharie N. Dongmo, Rosa M. Garriga, Jef Dupain, Renske E. Onstein, Roman M. Wittig, Christopher D. Barratt, Parag Kadam, Sonia Nicholl, Daniela Hedwig, Alex K. Piel, Sorrel Jones, Nakashima Yoshihiro, Emma Bailey, Thierry Aebischer, Erin G. Wessling, Kouamé P. N′Goran, Chris S. Duvall, Paolo Gratton, Bethan J. Morgan, Volker Sommer, Adam Welsh, Yisa Ginath Yuh, Jacqueline Sunderland-Groves, Manasseh Eno-Nku, Sylvain Gatti, Nadia Mirghani, Joost van Schijndel, Jacob Willie, Ammie K. Kalan, Kyle Yurkiw, Ilka Herbinger, Gilles Etoga, Emmanuel Danquah, Deborah L. Moore, Joana S. Carvalho, Jack D. Lester, Rebecca Chancellor, José F. C. Wenceslau, Célestin Yao Kouakou, Andrea Ghiurghi, Anne-Céline Granjon, Paula Dieguez, Kevin E. Langergraber, Els Ton, Mattia Bessone, Bartelijntje Buys, Anthony Agbor, Fiona A. Stewart, Lauren C. White, Veerle Hermans, Fiona Maisels, Heather Cohen, Lucy Jayne Ormsby, Maureen S. McCarthy, Josephine Head, Hilde Vanleeuwe, Ivonne Kienast, Mohamed Kambi, Barratt, Christopher D [0000-0003-3267-8855], Onstein, Renske E [0000-0002-2295-3510], Plumptre, Andrew J [0000-0002-9333-4047], Wessling, Erin G [0000-0001-9661-4354], Boesch, Christophe [0000-0001-9538-7858], Arandjelovic, Mimi [0000-0001-8920-9684], Kühl, Hjalmar [0000-0002-4440-9161], and Apollo - University of Cambridge Repository
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Settore BIO/05 ,diversification ,Pleistocene ,Pan troglodytes ,Range (biology) ,Climate ,Biodiversity ,Troglodytes ,species distribution modeling ,paleoclimate ,Animals ,Glacial period ,Biology ,Ecology, Evolution, Behavior and Systematics ,Ecosystem ,QL ,GE ,biology ,Ecology ,ensemble ,Genetic Variation ,biology.organism_classification ,Phylogeography ,Geography ,Habitat ,Refugium ,Interglacial ,Africa ,Animal Science and Zoology ,Species richness - Abstract
Paleoclimate reconstructions have enhanced our understanding of how past climates have shaped present-day biodiversity. We hypothesize that the geographic extent of Pleistocene forest refugia and suitable habitat fluctuated significantly in time during the late Quaternary for chimpanzees (Pan troglodytes). Using bioclimatic variables representing monthly temperature and precipitation estimates, past human population density data, and an extensive database of georeferenced presence points, we built a model of changing habitat suitability for chimpanzees at fine spatio-temporal scales dating back to the Last Interglacial (120,000 BP). Our models cover a spatial resolution of 0.0467 degrees (approximately 5.19 km(2) grid cells) and a temporal resolution of between 1000 and 4000 years. Using our model, we mapped habitat stability over time using three approaches, comparing our modeled stability estimates to existing knowledge of Afrotropical refugia, as well as contemporary patterns of major keystone tropical food resources used by chimpanzees, figs (Moraceae), and palms (Arecacae). Results show habitat stability congruent with known glacial refugia across Africa, suggesting their extents may have been underestimated for chimpanzees, with potentially up to approximately 60,000 km(2) of previously unrecognized glacial refugia. The refugia we highlight coincide with higher species richness for figs and palms. Our results provide spatio-temporally explicit insights into the role of refugia across the chimpanzee range, forming the empirical foundation for developing and testing hypotheses about behavioral, ecological, and genetic diversity with additional data. This methodology can be applied to other species and geographic areas when sufficient data are available.
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- 2021
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