76 results on '"Gnewuch, C"'
Search Results
2. 55-jähriger Patient mit abdominellen Schmerzen und Fieber
- Author
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Hahnel, A., Zitzler, N., Schardt, K., Gnewuch, C., Karrasch, T., Schulze, J., Peters, V., Müller, M., and Schäffler, A.
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- 2013
- Full Text
- View/download PDF
3. Critical appraisals of approaches for predictive designs in anticancer drugs
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Gnewuch, C. T. and Sosnovsky, G.
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- 2002
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- View/download PDF
4. A critical appraisal of the evolution of N-nitrosoureas as anticancer drugs
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Gnewuch, C. Thomas and Sosnovsky, George
- Subjects
Antineoplastic agents -- History ,Amino acids -- Research ,Peptides -- Research ,Nucleotides -- Research ,Chemistry - Abstract
The most recent generation, Fourth, of N-nitrosourea analogs with anticancer activities include amino acid and carbohydrate analogs with aminoxyl (nitroxyl) moieties, and conjugates such as steroid-amino acids. The First Generation of N-nitrosourea analogs with anticancer activities consist of heterocyclic, aromatic, alicyclic and lipophilic aliphatic analogs. The Second Generation comprises hydroxyalicyclic and hydroxyalkyl analogs, while the Third Generation comprises analogs containing carrier-groups such as nucleotides and peptides. The anticancer activity of N-nitrosourea drugs will be affected by carcinogenicity, toxicology, pharmacology and metabolism.
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- 1997
5. Genomewide meta-analysis identifies loci associated with IGF-I and IGEBP-3 levels with impact on age-related traits (vol 15, pg 811, 2016)
- Author
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Teumer, A., Qi, Q., Nethander, M., Aschard, H., Bandinelli, S., Beekman, M., Berndt, S.I., Bidlingmaier, M., Broer, L., Cappola, A., Ceda, G.P., Chanock, S., Chen, M.H., Chen, T.C., Chen, Y.D.I., Chung, J., Miglianico, F.D.G., Eriksson, J., Ferrucci, L., Friedrich, N., Gnewuch, C., Goodarzi, M.O., Grarup, N., Guo, T., Hammer, E., Hayes, R.B., Hicks, A.A., Hofman, A., Houwing-Duistermaat, J.J., Hu, F., Hunter, D.J., Husemoen, L.L., Isaacs, A., Jacobs, K.B., Janssen, J.A.M.J.L., Jansson, J.O., Jehmlich, N., Johnson, S., Juul, A., Karlsson, M., Kilpelainen, T.O., Kovacs, P., Kraft, P., Li, C., Linneberg, A., Liu, Y., Loos, R.J.F., Lorentzon, M., Lu, Y., Maggio, M., Magi, R., Meigs, J., Mellstrom, D., Nauck, M., Newman, A.B., Pollak, M.N., Pramstaller, P.P., Prokopenko, I., Psaty, B.M., Reincke, M., Rimm, E.B., Rotter, J.I., Pierre, A.S., Schurmann, C., Seshadri, S., Sjogren, K., Slagboom, P.E., Strickler, H.D., Stumvoll, M., Suh, Y., Sun, Q., Zhang, C., Svensson, J., Tanaka, T., Tare, A., Tonjes, A., Uh, H.W., Duijn, C.M. van, Heemst, D. van, Vandenput, L., Vasan, R.S., Volker, U., Willems, S.M., Ohlsson, C., Wallaschofski, H., Kaplan, R.C., CHARGE Longevity Working Grp, and Body Composition Genetics Consorti
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- 2017
6. Erratum: Genomewide meta-analysis identifies loci associated with IGF-I and IGEBP-3 levels with impact on age-related traits
- Author
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Teumer, A, Qi, Q, Nethander, M, Aschard, H, Bandinelli, S, Beekman, M, Berndt, SI, Bidlingmaier, M, Broer, L, Cappola, A, Ceda, GP, Chanock, S, Chen, M-H, Chen, TC, Chen, Y-DI, Chung, J, Miglianico, DGF, Eriksson, J, Ferrucci, L, Friedrich, N, Gnewuch, C, Goodarzi, MO, Grarup, N, Guo, T, Hammer, E, Hayes, RB, Hicks, AA, Hofman, A, Houwing-Duistermaat, JJ, Hu, F, Hunter, DJ, Husemoen, LL, Isaacs, A, Jacobs, KB, Janssen, JAMJL, Jansson, J-O, Jehmlich, N, Johnson, S, Juul, A, Karlsson, M, Kilpelainen, TO, Kovacs, P, Kraft, P, Li, C, Linneberg, A, Liu, Y, Loos, RJF, Lorentzon, M, Lu, Y, Maggio, M, Magi, R, Meigs, J, Mellstrom, D, Nauck, M, Newman, AB, Pollak, MN, Pramstaller, PP, Prokopenko, I, Psaty, BM, Reincke, M, Rimm, EB, Rotter, JI, Pierre, SA, Schurmann, C, Seshadri, S, Sjogren, K, Slagboom, PE, Strickler, HD, Stumvoll, M, Suh, Y, Sun, Q, Zhang, C, Svensson, J, Tanaka, T, Tare, A, Tonjes, A, Uh, H-W, Van Duijn, CM, Van Heemst, D, Vandenput, L, Vasan, RS, Volker, U, Willems, SM, Ohlsson, C, Wallaschofski, H, and Kaplan, RC
- Subjects
Science & Technology ,Geriatrics & Gerontology ,Cell Biology ,11 Medical And Health Sciences ,06 Biological Sciences ,Life Sciences & Biomedicine ,Developmental Biology - Abstract
In the article, ‘Genomewide meta-analysis identifies loci associated with IGF-I and IGFBP-3 levels with impact on age-related traits’, the published Table 1 was incorrect, due to an error.
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- 2017
7. Erratum: Genomewide meta-analysis identifies loci associated with IGF-I and IGFBP-3 levels with impact on age-related traits (vol 15, pg 811, 2016)
- Author
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Teumer, A., Qi, Q., Nethander, M., Aschard, H., Bandinelli, S., Beekman, M., Berndt, S.I., Bidlingmaier, M., Broer, L., Cappola, A., Ceda, G.P., Chanock, S., Chen, M.-H., Chen, T.C., Chen, Y.-D.I., Chung, J., Del Greco Miglianico, F., Eriksson, J., Ferrucci, L., Friedrich, N., Gnewuch, C., Goodarzi, M.O., Grarup, N., Guo, T., Hammer, E., Hayes, R.B., Hicks, A.A., Hofman, A., Houwing-Duistermaat, J.J., Hu, F., Hunter, D.J., Husemoen, L.L., Isaacs, A., Jacobs, K.B., Janssen, J.A.M.J.L., Jansson, J.-O., Jehmlich, Nico, Johnson, S., Juul, A., Karlsson, M., Kilpelainen, T.O., Kovacs, P., Kraft, P., Li, C., Linneberg, A., Liu, Y., Loos, R.J.F., Lorentzon, M., Lu, Y., Maggio, M., Magi, R., Meigs, J., Mellström, D., Nauck, M., Newman, A.B., Pollak, M.N., Pramstaller, P.P., Prokopenko, I., Psaty, B.M., Reincke, M., Rimm, R.B., Rotter, J.I., Saint Pierre, A., Schurmann, C., Seshadri, S., Sjögren, K., Slagboom, P.E., Strickler, H.D., Stumvoll, M., Suh, Y., Sun, Q., Zhang, C., Svensson, J., Tanaka, T., Tare, A., Tönjes, A., Uh, H.-W., van Duijn, C., van Heemst, D., Vandenput, L., Vasan, R.S., Völker, U., Willems, S.M., Ohlsson, C., Wallaschofski, H., Kaplan, R.C., Teumer, A., Qi, Q., Nethander, M., Aschard, H., Bandinelli, S., Beekman, M., Berndt, S.I., Bidlingmaier, M., Broer, L., Cappola, A., Ceda, G.P., Chanock, S., Chen, M.-H., Chen, T.C., Chen, Y.-D.I., Chung, J., Del Greco Miglianico, F., Eriksson, J., Ferrucci, L., Friedrich, N., Gnewuch, C., Goodarzi, M.O., Grarup, N., Guo, T., Hammer, E., Hayes, R.B., Hicks, A.A., Hofman, A., Houwing-Duistermaat, J.J., Hu, F., Hunter, D.J., Husemoen, L.L., Isaacs, A., Jacobs, K.B., Janssen, J.A.M.J.L., Jansson, J.-O., Jehmlich, Nico, Johnson, S., Juul, A., Karlsson, M., Kilpelainen, T.O., Kovacs, P., Kraft, P., Li, C., Linneberg, A., Liu, Y., Loos, R.J.F., Lorentzon, M., Lu, Y., Maggio, M., Magi, R., Meigs, J., Mellström, D., Nauck, M., Newman, A.B., Pollak, M.N., Pramstaller, P.P., Prokopenko, I., Psaty, B.M., Reincke, M., Rimm, R.B., Rotter, J.I., Saint Pierre, A., Schurmann, C., Seshadri, S., Sjögren, K., Slagboom, P.E., Strickler, H.D., Stumvoll, M., Suh, Y., Sun, Q., Zhang, C., Svensson, J., Tanaka, T., Tare, A., Tönjes, A., Uh, H.-W., van Duijn, C., van Heemst, D., Vandenput, L., Vasan, R.S., Völker, U., Willems, S.M., Ohlsson, C., Wallaschofski, H., and Kaplan, R.C.
- Abstract
no abstract
- Published
- 2017
8. Genomewide meta-analysis identifies loci associated with IGF-I and IGFBP-3 levels with impact on age-related traits
- Author
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Teumer, A. (Alexander), Qi, Q., Nethander, M. (Maria), Aschard, H. (Hugues), Bandinelli, S. (Stefania), Beekman, M. (Marian), Berndt, S.I. (Sonja), Bidlingmaier, M. (Martin), Broer, L. (Linda), Cappola, A.R. (Anne), Ceda, G.P. (Gian Paolo), Chanock, S.J. (Stephen), Chen, M.-H. (Ming-Huei), Chen, T.C. (Tai C.), Chen, Y.D. (Y.), Chung, J. (Jonathan), Del Greco Miglianico, F. (Fabiola), Eriksson, J. (Joel), Ferrucci, L. (Luigi), Friedrich, N. (Nele), Gnewuch, C. (Carsten), Goodarzi, M. (Mark), Grarup, N. (Niels), Guo, T. (Tingwei), Hammer, E. (Elke), Hayes, R.B. (Richard), Hicks, A.A. (Andrew), Hofman, A. (Albert), Houwing-Duistermaat, J.J. (Jeanine), Hu, F. (Frank), Hunter, D. (David), Husemoen, L.L.N. (Lise Lotte), Isaacs, A.J. (Aaron), Jacobs, K.B. (Kevin), Janssen, J.A.M.J.L. (Joop), Jansson, J.-O. (John-Olov), Jehmlich, N. (Nico), Johnson, S. (Simon), Juul, A. (Anders), Karlsson, M. (Magnus), Kilpeläinen, T.O. (Tuomas), Kovacs, P. (Peter), Kraft, P. (Peter), Li, C. (Chao), Linneberg, A. (Allan), Liu, Y. (YongMei), Loos, R.J.F. (Ruth), Lorentzon, M. (Mattias), Lu, Y. (Yingchang), Maggio, M. (Marcello), Mägi, R. (Reedik), Meigs, J.B. (James), Mellström, D. (Dan), Nauck, M. (Matthias), Newman, A.B. (Anne B.), Pollak, M.N. (Michael), Pramstaller, P.P. (Peter Paul), Prokopenko, I. (Inga), Psaty, B.M. (Bruce), Reincke, M. (Martin), Rimm, E.B. (Eric B.), Rotter, J.I. (Jerome I.), Saint Pierre, A. (Aude), Schurmann, C. (Claudia), Seshadri, S. (Sudha), Sjögren, K. (Klara), Slagboom, P.E. (Eline), Strickler, H.D. (Howard D.), Stumvoll, M. (Michael), Suh, Y. (Yousin), Sun, Q. (Qi), Zhang, C. (Cuilin), Svensson, J. (Johan), Tanaka, T. (Toshiko), Tare, A. (Archana), Tönjes, A. (Anke), Uh, H.-W. (Hae-Won), Duijn, C.M. (Cornelia) van, Heemst, D. (Diana) van, Vandenput, L. (Liesbeth), Vasan, R.S. (Ramachandran Srini), Völker, U. (Uwe), Willems, S.M. (Sara), Ohlsson, C. (Claes), Wallaschofski, H. (Henri), Kaplan, R.C. (Robert), Teumer, A. (Alexander), Qi, Q., Nethander, M. (Maria), Aschard, H. (Hugues), Bandinelli, S. (Stefania), Beekman, M. (Marian), Berndt, S.I. (Sonja), Bidlingmaier, M. (Martin), Broer, L. (Linda), Cappola, A.R. (Anne), Ceda, G.P. (Gian Paolo), Chanock, S.J. (Stephen), Chen, M.-H. (Ming-Huei), Chen, T.C. (Tai C.), Chen, Y.D. (Y.), Chung, J. (Jonathan), Del Greco Miglianico, F. (Fabiola), Eriksson, J. (Joel), Ferrucci, L. (Luigi), Friedrich, N. (Nele), Gnewuch, C. (Carsten), Goodarzi, M. (Mark), Grarup, N. (Niels), Guo, T. (Tingwei), Hammer, E. (Elke), Hayes, R.B. (Richard), Hicks, A.A. (Andrew), Hofman, A. (Albert), Houwing-Duistermaat, J.J. (Jeanine), Hu, F. (Frank), Hunter, D. (David), Husemoen, L.L.N. (Lise Lotte), Isaacs, A.J. (Aaron), Jacobs, K.B. (Kevin), Janssen, J.A.M.J.L. (Joop), Jansson, J.-O. (John-Olov), Jehmlich, N. (Nico), Johnson, S. (Simon), Juul, A. (Anders), Karlsson, M. (Magnus), Kilpeläinen, T.O. (Tuomas), Kovacs, P. (Peter), Kraft, P. (Peter), Li, C. (Chao), Linneberg, A. (Allan), Liu, Y. (YongMei), Loos, R.J.F. (Ruth), Lorentzon, M. (Mattias), Lu, Y. (Yingchang), Maggio, M. (Marcello), Mägi, R. (Reedik), Meigs, J.B. (James), Mellström, D. (Dan), Nauck, M. (Matthias), Newman, A.B. (Anne B.), Pollak, M.N. (Michael), Pramstaller, P.P. (Peter Paul), Prokopenko, I. (Inga), Psaty, B.M. (Bruce), Reincke, M. (Martin), Rimm, E.B. (Eric B.), Rotter, J.I. (Jerome I.), Saint Pierre, A. (Aude), Schurmann, C. (Claudia), Seshadri, S. (Sudha), Sjögren, K. (Klara), Slagboom, P.E. (Eline), Strickler, H.D. (Howard D.), Stumvoll, M. (Michael), Suh, Y. (Yousin), Sun, Q. (Qi), Zhang, C. (Cuilin), Svensson, J. (Johan), Tanaka, T. (Toshiko), Tare, A. (Archana), Tönjes, A. (Anke), Uh, H.-W. (Hae-Won), Duijn, C.M. (Cornelia) van, Heemst, D. (Diana) van, Vandenput, L. (Liesbeth), Vasan, R.S. (Ramachandran Srini), Völker, U. (Uwe), Willems, S.M. (Sara), Ohlsson, C. (Claes), Wallaschofski, H. (Henri), and Kaplan, R.C. (Robert)
- Abstract
The growth hormone/insulin-like growth factor (IGF) axis can be manipulated in animal models to promote longevity, and IGF-related proteins including IGF-I and IGF-binding protein-3 (IGFBP-3) have also been implicated in risk of human diseases including cardiovascular diseases, diabetes, and cancer. Through
- Published
- 2016
- Full Text
- View/download PDF
9. Genomewide meta‐analysis identifies loci associated with IGF‐I and IGFBP‐3 levels with impact on age‐related traits
- Author
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Teumer, A., Qi, Q., Nethander, M., Aschard, H., Bandinelli, S., Beekman, M., Berndt, S.I., Bidlingmaier, M., Broer, L., Cappola, A., Ceda, G.P., Chanock, S., Chen, M.-H., Chen, T.C., Chen, Y.-D.I., Chung, J., Del Greco Miglianico, F., Eriksson, J., Ferrucci, L., Friedrich, N., Gnewuch, C., Goodarzi, M.O., Grarup, N., Guo, T., Hammer, E., Hayes, R.B., Hicks, A.A., Hofman, A., Houwing-Duistermaat, J.J., Hu, F., Hunter, D.J., Husemoen, L.L., Isaacs, A., Jacobs, K.B., Janssen, J.A.M.J.L., Jansson, J.-O., Jehmlich, Nico, Johnson, S., Juul, A., Karlsson, M., Kilpelainen, T.O., Kovacs, P., Kraft, P., Li, C., Linneberg, A., Liu, Y., Loos, R.J.F., Lorentzon, M., Lu, Y., Maggio, M., Magi, R., Meigs, J., Mellström, D., Nauck, M., Newman, A.B., Pollak, M.N., Pramstaller, P.P., Prokopenko, I., Psaty, B.M., Reincke, M., Rimm, R.B., Rotter, J.I., Saint Pierre, A., Schurmann, C., Seshadri, S., Sjögren, K., Slagboom, P.E., Strickler, H.D., Stumvoll, M., Suh, Y., Sun, Q., Zhang, C., Svensson, J., Tanaka, T., Tare, A., Tönjes, A., Uh, H.-W., van Duijn, C., van Heemst, D., Vandenput, L., Vasan, R.S., Völker, U., Willems, S.M., Ohlsson, C., Wallaschofski, H., Kaplan, R.C., Teumer, A., Qi, Q., Nethander, M., Aschard, H., Bandinelli, S., Beekman, M., Berndt, S.I., Bidlingmaier, M., Broer, L., Cappola, A., Ceda, G.P., Chanock, S., Chen, M.-H., Chen, T.C., Chen, Y.-D.I., Chung, J., Del Greco Miglianico, F., Eriksson, J., Ferrucci, L., Friedrich, N., Gnewuch, C., Goodarzi, M.O., Grarup, N., Guo, T., Hammer, E., Hayes, R.B., Hicks, A.A., Hofman, A., Houwing-Duistermaat, J.J., Hu, F., Hunter, D.J., Husemoen, L.L., Isaacs, A., Jacobs, K.B., Janssen, J.A.M.J.L., Jansson, J.-O., Jehmlich, Nico, Johnson, S., Juul, A., Karlsson, M., Kilpelainen, T.O., Kovacs, P., Kraft, P., Li, C., Linneberg, A., Liu, Y., Loos, R.J.F., Lorentzon, M., Lu, Y., Maggio, M., Magi, R., Meigs, J., Mellström, D., Nauck, M., Newman, A.B., Pollak, M.N., Pramstaller, P.P., Prokopenko, I., Psaty, B.M., Reincke, M., Rimm, R.B., Rotter, J.I., Saint Pierre, A., Schurmann, C., Seshadri, S., Sjögren, K., Slagboom, P.E., Strickler, H.D., Stumvoll, M., Suh, Y., Sun, Q., Zhang, C., Svensson, J., Tanaka, T., Tare, A., Tönjes, A., Uh, H.-W., van Duijn, C., van Heemst, D., Vandenput, L., Vasan, R.S., Völker, U., Willems, S.M., Ohlsson, C., Wallaschofski, H., and Kaplan, R.C.
- Abstract
The growth hormone/insulin-like growth factor (IGF) axis can be manipulated in animal models to promote longevity, and IGF-related proteins including IGF-I and IGF-binding protein-3 (IGFBP-3) have also been implicated in risk of human diseases including cardiovascular diseases, diabetes, and cancer. Through genomewide association study of up to 30 884 adults of European ancestry from 21 studies, we confirmed and extended the list of previously identified loci associated with circulating IGF-I and IGFBP-3 concentrations (IGF1, IGFBP3, GCKR, TNS3, GHSR, FOXO3, ASXL2, NUBP2/IGFALS, SORCS2, and CELSR2). Significant sex interactions, which were characterized by different genotype–phenotype associations between men and women, were found only for associations of IGFBP-3 concentrations with SNPs at the loci IGFBP3 and SORCS2. Analyses of SNPs, gene expression, and protein levels suggested that interplay between IGFBP3 and genes within the NUBP2 locus (IGFALS and HAGH) may affect circulating IGF-I and IGFBP-3 concentrations. The IGF-I-decreasing allele of SNP rs934073, which is an eQTL of ASXL2, was associated with lower adiposity and higher likelihood of survival beyond 90 years. The known longevity-associated variant rs2153960 (FOXO3) was observed to be a genomewide significant SNP for IGF-I concentrations. Bioinformatics analysis suggested enrichment of putative regulatory elements among these IGF-I- and IGFBP-3-associated loci, particularly of rs646776 at CELSR2. In conclusion, this study identified several loci associated with circulating IGF-I and IGFBP-3 concentrations and provides clues to the potential role of the IGF axis in mediating effects of known (FOXO3) and novel (ASXL2) longevity-associated loci.
- Published
- 2016
10. Genomewide meta-analysis identifies loci associated with IGF-I and IGFBP-3 levels with impact on age-related traits
- Author
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Teumer, A, Qi, QB, Nethander, M, Aschard, H, Bandinelli, S, Beekman, M, Berndt, SI, Bidlingmaier, M, Broer, Linda, Cappola, A, Ceda, G P, Chanock, S, Chen, MH, Chen, T C, Chen, YDI, Chung, JW, Miglianico, F D, Eriksson, J, Ferrucci, L, Friedrich, N, Gnewuch, C, Goodarzi, MO, Grarup, N, Guo, T W, Hammer, E, Hayes, RB, Hicks, AA, Hofman, Bert, Houwing-Duistermaat, JJ, Hu, F, Hunter, DJ, Husemoen, LL, Isaacs, Aaron, Jacobs, KB, Janssen, J.A.M.J.L., Jansson, JO, Jehmlich, N, Johnson, S, Juul, A, Karlsson, M, Kilpelainen, TO, Kovacs, P, Kraft, P, Li, C, Linneberg, A, Liu, YM, Loos, RJF, Lorentzon, M, Lu, YC, Maggio, M, Magi, R, Meigs, J, Mellstrom, D, Nauck, M, Newman, AB, Pollak, MN, Pramstaller, PP, Prokopenko, I, Psaty, BM, Reincke, M, Rimm, EB, Rotter, JI, Saint Pierre, A, Schurmann, C, Seshadri, S, Sjogren, K, Slagboom, PE (Eline), Strickler, H D, Stumvoll, M, Suh, Y S, Sun, Q, Zhang, CL, Svensson, J, Tanaka, T, Tare, A, Tonjes, A, Uh, HW, Duijn, Cornelia, van Heemst, D, Vandenput, L, Vasan, RS, Volker, U, Willems, SM, Ohlsson, C, Wallaschofski, H, Kaplan, RC, Teumer, A, Qi, QB, Nethander, M, Aschard, H, Bandinelli, S, Beekman, M, Berndt, SI, Bidlingmaier, M, Broer, Linda, Cappola, A, Ceda, G P, Chanock, S, Chen, MH, Chen, T C, Chen, YDI, Chung, JW, Miglianico, F D, Eriksson, J, Ferrucci, L, Friedrich, N, Gnewuch, C, Goodarzi, MO, Grarup, N, Guo, T W, Hammer, E, Hayes, RB, Hicks, AA, Hofman, Bert, Houwing-Duistermaat, JJ, Hu, F, Hunter, DJ, Husemoen, LL, Isaacs, Aaron, Jacobs, KB, Janssen, J.A.M.J.L., Jansson, JO, Jehmlich, N, Johnson, S, Juul, A, Karlsson, M, Kilpelainen, TO, Kovacs, P, Kraft, P, Li, C, Linneberg, A, Liu, YM, Loos, RJF, Lorentzon, M, Lu, YC, Maggio, M, Magi, R, Meigs, J, Mellstrom, D, Nauck, M, Newman, AB, Pollak, MN, Pramstaller, PP, Prokopenko, I, Psaty, BM, Reincke, M, Rimm, EB, Rotter, JI, Saint Pierre, A, Schurmann, C, Seshadri, S, Sjogren, K, Slagboom, PE (Eline), Strickler, H D, Stumvoll, M, Suh, Y S, Sun, Q, Zhang, CL, Svensson, J, Tanaka, T, Tare, A, Tonjes, A, Uh, HW, Duijn, Cornelia, van Heemst, D, Vandenput, L, Vasan, RS, Volker, U, Willems, SM, Ohlsson, C, Wallaschofski, H, and Kaplan, RC
- Published
- 2016
11. Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations
- Author
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Demirkan, A., van Duijn, C.M., Ugocsai, P., Isaacs, A., Pramstaller, P.P., Liebisch, G., Wilson, J.F., Johansson, A., Rudan, I., Aulchenko, Y.S., Kirichenko, A.V., Janssens, A.C.J.W., Jansen, R.C., Gnewuch, C., Domingues, F.S., Pattaro, C., Wild, S.H., Jonasson, I., Polasek, O., Zorkoltseva, I.V., Hofman, A., Karssen, L.C., Struchalin, M., Floyd, J., Igl, W., Biloglav, Z., Broer, L., Pfeufer, A., Pichler, I., Campbell, S., Zaboli, G., Kolcic, I., Rivadeneira, F., Huffman, J., Hastie, N.D., Uitterlinden, A., Franke, L., Franklin, C.S., Vitart, V., Nelson, C.P., Preuss, M., Bis, J.C., O'Donnell, C.J., Franceschini, N., Witteman, J.C.M., Axenovich, T., Oostra, B.A., Meitinger, T., Hicks, A.A., Hayward, C., Wright, A.F., Gyllensten, U., Campbell, H., Schmitz, G., and Consortium, EUROSPAN
- Subjects
lipids (amino acids, peptides, and proteins) - Abstract
Phospho- and sphingolipids are crucial cellular and intracellular compounds. These lipids are required for active transport, a number of enzymatic processes, membrane formation, and cell signalling. Disruption of their metabolism leads to several diseases, with diverse neurological, psychiatric, and metabolic consequences. A large number of phospholipid and sphingolipid species can be detected and measured in human plasma. We conducted a meta-analysis of five European family-based genome-wide association studies (N = 4034) on plasma levels of 24 sphingomyelins (SPM), 9 ceramides (CER), 57 phosphatidylcholines (PC), 20 lysophosphatidylcholines (LPC), 27 phosphatidylethanolamines (PE), and 16 PE-based plasmalogens (PLPE), as well as their proportions in each major class. This effort yielded 25 genome-wide significant loci for phospholipids (smallest P-value = 9.88x10(-204)) and 10 loci for sphingolipids (smallest P-value = 3.10x10(-57)). After a correction for multiple comparisons (P-value
- Published
- 2012
12. N-Nitrosamine Fragmentation and N-Nitrosamine Transformation
- Author
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LOEPPKY, RICHARD N., primary, GNEWUCH, C. THOMAS, additional, HAZLITT, LONNIE G., additional, and McKINLEY, WAYNE A., additional
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- 1979
- Full Text
- View/download PDF
13. Automated workflow-based exploitation of pathway databases provides new insights into genetic associations of metabolite profiles
- Author
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Dharuri, H. (Harish), Henneman, P. (Peter), Demirkan, A. (Ayşe), Klinken, J.B. (Jan) van, Mook-Kanamori, D.O. (Dennis), Wang-Sattler, R. (Rui), Gieger, C. (Christian), Adamski, J. (Jerzy), Hettne, K.M. (Kristina), Roos, M. (Marco), Suhre, K. (Karsten), Duijn, C.M. (Cornelia) van, Willems van Dijk, J.A.P. (Ko), Hoen, P.A.C. (Peter) 't, Ugocsai, P. (Peter), Isaacs, A.J. (Aaron), Pramstaller, P.P. (Peter Paul), Liebisch, G. (Gerhard), Wilson, J.F. (James F), Johansson, A. (Åsa), Rudan, I. (Igor), Aulchenko, Y.S. (Yurii), Kirichenko, A.V. (Anatoly), Janssens, A.C.J.W. (Cécile), Jansen, R.C. (Ritsert), Gnewuch, C. (Carsten), Domingues, I. (Inês), Pattaro, C. (Cristian), Wild, S.H. (Sarah), Jonasson, I. (Inger), Polasek, O. (Ozren), Zorkoltseva, I.V. (Irina), Hofman, A. (Albert), Karssen, L.C. (Lennart), Struchalin, M.V. (Maksim), Floyd, J. (Jamie), Igl, W. (Wilmar), Biloglav, Z. (Zrinka), Broer, L. (Linda), Pfeufer, A. (Arne), Pichler, I. (Irene), Campbell, S. (Susan), Zaboli, G. (Ghazal), Kolcic, I. (Ivana), Rivadeneira Ramirez, F. (Fernando), Huffman, J.E. (Jennifer), Hastie, N. (Nick), Uitterlinden, A.G. (André), Franke, L. (Lude), Franklin, C.S. (Christopher), Vitart, V. (Veronique), Witteman, J.C.M. (Jacqueline), Axenovich, T.I. (Tatiana), Oostra, B.A. (Ben), Meitinger, T. (Thomas), Hicks, A.A. (Andrew), Hayward, C. (Caroline), Wright, A.F. (Alan), Gyllensten, U. (Ulf), Campbell, H. (Harry), Schmitz, G. (Gerd), Dharuri, H. (Harish), Henneman, P. (Peter), Demirkan, A. (Ayşe), Klinken, J.B. (Jan) van, Mook-Kanamori, D.O. (Dennis), Wang-Sattler, R. (Rui), Gieger, C. (Christian), Adamski, J. (Jerzy), Hettne, K.M. (Kristina), Roos, M. (Marco), Suhre, K. (Karsten), Duijn, C.M. (Cornelia) van, Willems van Dijk, J.A.P. (Ko), Hoen, P.A.C. (Peter) 't, Ugocsai, P. (Peter), Isaacs, A.J. (Aaron), Pramstaller, P.P. (Peter Paul), Liebisch, G. (Gerhard), Wilson, J.F. (James F), Johansson, A. (Åsa), Rudan, I. (Igor), Aulchenko, Y.S. (Yurii), Kirichenko, A.V. (Anatoly), Janssens, A.C.J.W. (Cécile), Jansen, R.C. (Ritsert), Gnewuch, C. (Carsten), Domingues, I. (Inês), Pattaro, C. (Cristian), Wild, S.H. (Sarah), Jonasson, I. (Inger), Polasek, O. (Ozren), Zorkoltseva, I.V. (Irina), Hofman, A. (Albert), Karssen, L.C. (Lennart), Struchalin, M.V. (Maksim), Floyd, J. (Jamie), Igl, W. (Wilmar), Biloglav, Z. (Zrinka), Broer, L. (Linda), Pfeufer, A. (Arne), Pichler, I. (Irene), Campbell, S. (Susan), Zaboli, G. (Ghazal), Kolcic, I. (Ivana), Rivadeneira Ramirez, F. (Fernando), Huffman, J.E. (Jennifer), Hastie, N. (Nick), Uitterlinden, A.G. (André), Franke, L. (Lude), Franklin, C.S. (Christopher), Vitart, V. (Veronique), Witteman, J.C.M. (Jacqueline), Axenovich, T.I. (Tatiana), Oostra, B.A. (Ben), Meitinger, T. (Thomas), Hicks, A.A. (Andrew), Hayward, C. (Caroline), Wright, A.F. (Alan), Gyllensten, U. (Ulf), Campbell, H. (Harry), and Schmitz, G. (Gerd)
- Abstract
Background: Genome-wide association studies (GWAS) have identified many common single nucleotide polymorphisms (SNPs) that associate with clinical phenotypes, but these SNPs usually explain just a small part of the heritability and have relatively modest effect sizes. In contrast, SNPs that associate with metabolite levels generally explain a higher percentage of the genetic variation and demonstrate larger effect sizes. Still, the discovery of SNPs associated with metabolite levels is challenging since testing all metabolites measured in typical metabolomics studies with all SNPs comes with a severe multiple testing penalty. We have developed an automated workflow approach that utilizes prior knowledge of biochemical pathways present in databases like KEGG and BioCyc to generate a smaller SNP set relevant to the metabolite. This paper explores the opportunities and challenges in the analysis of GWAS of metabolomic phenotypes and provides novel insights into the genetic basis of metabolic variation through the re-analysis of published GWAS datasets. Results: Re-analysis of the published GWAS dataset from Illig et al. (Nature Genetics, 2010) using a pathway-based workflow (http://www.myexperiment.org/packs/319.html), confirmed previously identified hits and identified a new locus of human metabolic individuality, associating Aldehyde dehydrogenase family1 L1 (ALDH1L1) with serine/glycine ratios in blood. Replication in an independent GWAS dataset of phospholipids (Demirkan et al., PLoS Genetics, 2012) identified two novel loci supported by additional literature evidence: GPAM (Glycerol-3 phosphate acyltransferase) and CBS (Cystathionine beta-synthase). In addition, the workflow approach provided novel insight into the affected pathways and relevance of some of these gene-metabolite pairs in disease development and progression. Conclusions: We demonstrate the utility of automated exploitation of background knowledge present in pathway databases for the analysis of GWA
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- 2013
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14. Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations
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Demirkan, A. (Ayşe), Duijn, C.M. (Cornelia) van, Ugocsai, P. (Peter), Isaacs, A.J. (Aaron), Pramstaller, P.P. (Peter Paul), Liebisch, G. (Gerhard), Wilson, J.F. (James), Johansson, A. (Åsa), Rudan, I. (Igor), Aulchenko, Y.S. (Yurii), Kirichenko, A.V. (Anatoly), Janssens, A.C.J.W. (Cécile), Jansen, R.C. (Ritsert), Gnewuch, C. (Carsten), Domingues, I. (Inês), Pattaro, C. (Cristian), Wild, S.H. (Sarah), Jonasson, I. (Inger), Polasek, O. (Ozren), Zorkoltseva, I.V. (Irina), Hofman, A. (Albert), Karssen, L.C. (Lennart), Struchalin, M.V. (Maksim), Floyd, J. (Jamie), Igl, W. (Wilmar), Biloglav, Z. (Zrinka), Broer, L. (Linda), Pfeufer, A. (Arne), Pichler, I. (Irene), Campbell, S. (Susan), Zaboli, G. (Ghazal), Kolcic, I. (Ivana), Rivadeneira Ramirez, F. (Fernando), Huffman, J.E. (Jennifer), Hastie, N. (Nick), Uitterlinden, A.G. (André), Franke, L. (Lude), Franklin, C.S. (Christopher), Vitart, V. (Veronique), Nelson, C.P. (Christopher P.), Preuss, M. (Michael), Bis, J.C. (Joshua), O'Donnell, C.J. (Christopher), Franceschini, N. (Nora), Witteman, J.C.M. (Jacqueline), Axenovich, T.I. (Tatiana), Oostra, B.A. (Ben), Meitinger, T. (Thomas), Hicks, A.A. (Andrew), Hayward, C. (Caroline), Wright, A.F. (Alan), Gyllensten, U. (Ulf), Campbell, H. (Harry), Schmitz, G. (Gerd), Demirkan, A. (Ayşe), Duijn, C.M. (Cornelia) van, Ugocsai, P. (Peter), Isaacs, A.J. (Aaron), Pramstaller, P.P. (Peter Paul), Liebisch, G. (Gerhard), Wilson, J.F. (James), Johansson, A. (Åsa), Rudan, I. (Igor), Aulchenko, Y.S. (Yurii), Kirichenko, A.V. (Anatoly), Janssens, A.C.J.W. (Cécile), Jansen, R.C. (Ritsert), Gnewuch, C. (Carsten), Domingues, I. (Inês), Pattaro, C. (Cristian), Wild, S.H. (Sarah), Jonasson, I. (Inger), Polasek, O. (Ozren), Zorkoltseva, I.V. (Irina), Hofman, A. (Albert), Karssen, L.C. (Lennart), Struchalin, M.V. (Maksim), Floyd, J. (Jamie), Igl, W. (Wilmar), Biloglav, Z. (Zrinka), Broer, L. (Linda), Pfeufer, A. (Arne), Pichler, I. (Irene), Campbell, S. (Susan), Zaboli, G. (Ghazal), Kolcic, I. (Ivana), Rivadeneira Ramirez, F. (Fernando), Huffman, J.E. (Jennifer), Hastie, N. (Nick), Uitterlinden, A.G. (André), Franke, L. (Lude), Franklin, C.S. (Christopher), Vitart, V. (Veronique), Nelson, C.P. (Christopher P.), Preuss, M. (Michael), Bis, J.C. (Joshua), O'Donnell, C.J. (Christopher), Franceschini, N. (Nora), Witteman, J.C.M. (Jacqueline), Axenovich, T.I. (Tatiana), Oostra, B.A. (Ben), Meitinger, T. (Thomas), Hicks, A.A. (Andrew), Hayward, C. (Caroline), Wright, A.F. (Alan), Gyllensten, U. (Ulf), Campbell, H. (Harry), and Schmitz, G. (Gerd)
- Abstract
Phospho- and sphingolipids are crucial cellular and intracellular compounds. These lipids are required for active transport, a number of enzymatic processes, membrane formation, and cell signalling. Disruption of their metabolism leads to several diseases, with diverse neurological, psychiatric, and metabolic consequences. A large number of phospholipid and sphingolipid species can be detected and measured in human plasma. We conducted a meta-analysis of five European family-based genome-wide association studies (N = 4034) on plasma levels of 24 sphingomyelins (SPM), 9 ceramides (CER), 57 phosphatidylcholines (PC), 20 lysophosphatidylcholines (LPC), 27 phosphatidylethanolamines (PE), and 16 PE-based plasmalogens (PLPE), as well as their proportions in each major class. This effort yielded 25 genome-wide significant loci for phospholipids (smallest P-value = 9.88×10 -204) and 10 loci for sphingolipids (smallest P-value = 3.10×10 -57). After a correction for multiple comparisons (P-value&2.2×10 -9), we observed four novel loci significantly associated with phospholipids (PAQR9, AGPAT1, PKD2L1, PDXDC1) and two with sphingolipids (PLD2 and APOE) explaining up to 3.1% of the variance. Further analysis of the top findings with respect to within class molar proportions uncovered three additional loci for phospholipids (PNLIPRP2, PCDH20, and ABDH3) suggesting their involvement in either fatty acid elongation/saturation processes or fatty acid specific turnover mechanisms. Among those, 14 loci (KCNH7, AGPAT1, PNLIPRP2, SYT9, FADS1-2-3, DLG2, APOA1, ELOVL2, CDK17, LIPC, PDXDC1, PLD2, LASS4, and APOE) mapped into the glycerophospholipid and 12 loci (ILKAP, ITGA9, AGPAT1, FADS1-2-3, APOA1, PCDH20, LIPC, PDXDC1, SGPP1, APOE, LASS4, and PLD2) to the sphingolipid pathways. In large meta-analyses, associations between FADS1-2-3 and carotid intima media thickness, AGPAT1 and type 2 diabetes, and APOA1 and coronary artery disease were observed. In conclusion, our study identified nin
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- 2012
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15. Genome-Wide Association Study Identifies Novel Loci Associated with Circulating Phospho- and Sphingolipid Concentrations
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Demirkan, Ayse, Duijn, Cornelia, Ugocsai, P, Isaacs, Aaron, Pramstaller, PP, Liebisch, G, Wilson, JF, Johansson, A, Rudan, I, Aulchenko, YS, Kirichenko, AV, Janssens, Cecile, Jansen, RC, Gnewuch, C, Domingues, FS, Pattaro, C, Wild, SH, Jonasson, I, Polasek, O, Zorkoltseva, IV, Hofman, Bert, Karssen, Lennart, Struchalin, M, Floyd, J, Igl, W, Biloglav, Z, Broer, Linda, Pfeufer, A, Pichler, I, Campbell, S, Zaboli, G, Kolcic, I, Rivadeneira, Fernando, Huffman, J, Hastie, ND, Uitterlinden, André, Franke, L, Franklin, CS, Vitart, V, Nelson, CP, Preuss, M, Bis, JC, O'Donnell, CJ, Franceschini, N, Witteman, JCM, Axenovich, T, Oostra, Ben, Meitinger, T, Hicks, AA, Hayward, C, Wright, AF, Gyllensten, U, Campbell, H, Schmitz, G, Demirkan, Ayse, Duijn, Cornelia, Ugocsai, P, Isaacs, Aaron, Pramstaller, PP, Liebisch, G, Wilson, JF, Johansson, A, Rudan, I, Aulchenko, YS, Kirichenko, AV, Janssens, Cecile, Jansen, RC, Gnewuch, C, Domingues, FS, Pattaro, C, Wild, SH, Jonasson, I, Polasek, O, Zorkoltseva, IV, Hofman, Bert, Karssen, Lennart, Struchalin, M, Floyd, J, Igl, W, Biloglav, Z, Broer, Linda, Pfeufer, A, Pichler, I, Campbell, S, Zaboli, G, Kolcic, I, Rivadeneira, Fernando, Huffman, J, Hastie, ND, Uitterlinden, André, Franke, L, Franklin, CS, Vitart, V, Nelson, CP, Preuss, M, Bis, JC, O'Donnell, CJ, Franceschini, N, Witteman, JCM, Axenovich, T, Oostra, Ben, Meitinger, T, Hicks, AA, Hayward, C, Wright, AF, Gyllensten, U, Campbell, H, and Schmitz, G
- Abstract
Phospho- and sphingolipids are crucial cellular and intracellular compounds. These lipids are required for active transport, a number of enzymatic processes, membrane formation, and cell signalling. Disruption of their metabolism leads to several diseases, with diverse neurological, psychiatric, and metabolic consequences. A large number of phospholipid and sphingolipid species can be detected and measured in human plasma. We conducted a meta-analysis of five European family-based genome-wide association studies (N = 4034) on plasma levels of 24 sphingomyelins (SPM), 9 ceramides (CER), 57 phosphatidylcholines (PC), 20 lysophosphatidylcholines (LPC), 27 phosphatidylethanolamines (PE), and 16 PE-based plasmalogens (PLPE), as well as their proportions in each major class. This effort yielded 25 genome-wide significant loci for phospholipids (smallest P-value = 9.88 x 10(-204)) and 10 loci for sphingolipids (smallest P-value = 3.10 x 10(-57)). After a correction for multiple comparisons (P-value, 2.2 x 10(-9)), we observed four novel loci significantly associated with phospholipids (PAQR9, AGPAT1, PKD2L1, PDXDC1) and two with sphingolipids (PLD2 and APOE) explaining up to 3.1% of the variance. Further analysis of the top findings with respect to within class molar proportions uncovered three additional loci for phospholipids (PNLIPRP2, PCDH20, and ABDH3) suggesting their involvement in either fatty acid elongation/saturation processes or fatty acid specific turnover mechanisms. Among those, 14 loci (KCNH7, AGPAT1, PNLIPRP2, SYT9, FADS1-2-3, DLG2, APOA1, ELOVL2, CDK17, LIPC, PDXDC1, PLD2, LASS4, and APOE) mapped into the glycerophospholipid and 12 loci (ILKAP, ITGA9, AGPAT1, FADS1-2-3, APOA1, PCDH20, LIPC, PDXDC1, SGPP1, APOE, LASS4, and PLD2) to the sphingolipid pathways. In large meta-analyses, associations between FADS1-2-3 and carotid intima media thickness, AGPAT1 and type 2 diabetes, and APOA1 and coronary artery disease were observed. In conclusion, our study iden
- Published
- 2012
16. A meta-analysis of genome-wide data from five European isolates reveals an association of COL22A1, SYT1, and GABRR2 with serum creatinine level
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Pattaro, C. (Cristian), Grandi, A. (Alessandro) de, Vitart, V. (Veronique), Hayward, C. (Caroline), Franke, A. (Andre), Aulchenko, Y.S. (Yurii), Johansson, A. (Åsa), Wild, S.H. (Sarah), Melville, S.A. (Scott), Isaacs, A.J. (Aaron), Polasek, O. (Ozren), Ellinghaus, D. (David), Kolcic, I. (Ivana), Nöthlings, U. (Ute), Zgaga, L. (Lina), Zemunik, T. (Tatijana), Gnewuch, C. (Carsten), Schreiber, S. (Stefan), Campbell, S. (Susan), Hastie, N. (Nick), Boban, M. (Mladen), Meitinger, T. (Thomas), Oostra, B.A. (Ben), Riegler, P. (Peter), Minelli, C. (Cosetta), Wright, A.F. (Alan), Campbell, H. (Harry), Duijn, C.M. (Cornelia) van, Gyllensten, U. (Ulf), Wilson, J.F. (James), Krawczak, M. (Michael), Rudan, I. (Igor), Pramstaller, P.P. (Peter Paul), Pattaro, C. (Cristian), Grandi, A. (Alessandro) de, Vitart, V. (Veronique), Hayward, C. (Caroline), Franke, A. (Andre), Aulchenko, Y.S. (Yurii), Johansson, A. (Åsa), Wild, S.H. (Sarah), Melville, S.A. (Scott), Isaacs, A.J. (Aaron), Polasek, O. (Ozren), Ellinghaus, D. (David), Kolcic, I. (Ivana), Nöthlings, U. (Ute), Zgaga, L. (Lina), Zemunik, T. (Tatijana), Gnewuch, C. (Carsten), Schreiber, S. (Stefan), Campbell, S. (Susan), Hastie, N. (Nick), Boban, M. (Mladen), Meitinger, T. (Thomas), Oostra, B.A. (Ben), Riegler, P. (Peter), Minelli, C. (Cosetta), Wright, A.F. (Alan), Campbell, H. (Harry), Duijn, C.M. (Cornelia) van, Gyllensten, U. (Ulf), Wilson, J.F. (James), Krawczak, M. (Michael), Rudan, I. (Igor), and Pramstaller, P.P. (Peter Paul)
- Abstract
Background: Serum creatinine (SCR) is the most important biomarker for a quick and non-invasive assessment of kidney function in population-based surveys. A substantial proportion of the inter-individual variability in SCR level is explicable by genetic factors.Methods: We performed a meta-analysis of genome-wide association studies of SCR undertaken in five population isolates ('discovery cohorts'), all of which are part of the European Special Population Network (EUROSPAN) project. Genes showing the strongest evidence f
- Published
- 2010
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17. Modeling of environmental effects in genome-wide association studies identifies SLC2A2 and HP as novel loci influencing serum cholesterol levels
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Igl, W. (Wilmar), Johansson, A. (Åsa), Wilson, J.F. (James), Wild, S.H. (Sarah), Polasek, O. (Ozren), Hayward, C. (Caroline), Vitart, V. (Veronique), Hastie, N. (Nick), Rudan, P. (Pavao), Gnewuch, C. (Carsten), Schmitz, G. (Gerd), Meitinger, T. (Thomas), Pramstaller, P.P. (Peter Paul), Hicks, A.A. (Andrew), Oostra, B.A. (Ben), Duijn, C.M. (Cornelia) van, Rudan, I. (Igor), Wright, A.F. (Alan), Campbell, H. (Harry), Gyllensten, U. (Ulf), Igl, W. (Wilmar), Johansson, A. (Åsa), Wilson, J.F. (James), Wild, S.H. (Sarah), Polasek, O. (Ozren), Hayward, C. (Caroline), Vitart, V. (Veronique), Hastie, N. (Nick), Rudan, P. (Pavao), Gnewuch, C. (Carsten), Schmitz, G. (Gerd), Meitinger, T. (Thomas), Pramstaller, P.P. (Peter Paul), Hicks, A.A. (Andrew), Oostra, B.A. (Ben), Duijn, C.M. (Cornelia) van, Rudan, I. (Igor), Wright, A.F. (Alan), Campbell, H. (Harry), and Gyllensten, U. (Ulf)
- Abstract
Genome-wide association studies (GWAS) have identified 38 larger genetic regions affecting classical blood lipid levels without adjusting for important environmental influences. We modeled diet and physical activity in a GWA
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- 2010
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- View/download PDF
18. Modeling of Environmental Effects in Genome-Wide Association Studies Identifies SLC2A2 and HP as Novel Loci Influencing Serum Cholesterol Levels
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Igl, W, Johansson, A, Wilson, JF, Wild, SH, Polasek, O, Hayward, C, Vitart, V, Hastie, N, Rudan, P, Gnewuch, C, Schmitz, G, Meitinger, T, Pramstaller, PP, Hicks, AA, Oostra, Ben, Duijn, Cornelia, Rudan, I, Wright, A, Campbell, H, Gyllensten, U, Igl, W, Johansson, A, Wilson, JF, Wild, SH, Polasek, O, Hayward, C, Vitart, V, Hastie, N, Rudan, P, Gnewuch, C, Schmitz, G, Meitinger, T, Pramstaller, PP, Hicks, AA, Oostra, Ben, Duijn, Cornelia, Rudan, I, Wright, A, Campbell, H, and Gyllensten, U
- Abstract
Genome-wide association studies (GWAS) have identified 38 larger genetic regions affecting classical blood lipid levels without adjusting for important environmental influences. We modeled diet and physical activity in a GWAS in order to identify novel loci affecting total cholesterol, LDL cholesterol, HDL cholesterol, and triglyceride levels. The Swedish (SE) EUROSPAN cohort (N-SE = 656) was screened for candidate genes and the non-Swedish (NS) EUROSPAN cohorts (N-NS = 3,282) were used for replication. In total, 3 SNPs were associated in the Swedish sample and were replicated in the non-Swedish cohorts. While SNP rs1532624 was a replication of the previously published association between CETP and HDL cholesterol, the other two were novel findings. For the latter SNPs, the p-value for association was substantially improved by inclusion of environmental covariates: SNP rs5400 (p(SE,unadjusted) = 3.6x10(-5), p(SE,adjusted) = 2.26x10(-6), p(NS,unadjusted) = 0.047) in the SLC2A2 ( Glucose transporter type 2) and rs2000999 (p(SE,unadjusted) = 1.1x10(-3), p(SE,adjusted) = 3.8x10(-4), p(NS,unadjusted) = 0.035) in the HP gene (Haptoglobin-related protein precursor). Both showed evidence of association with total cholesterol. These results demonstrate that inclusion of important environmental factors in the analysis model can reveal new genetic susceptibility loci.
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- 2010
19. A meta-analysis of genome-wide data from five European isolates reveals an association of COL22A1, SYT1, and GABRR2 with serum creatinine level
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Pattaro, C, De Grandi, A, Vitart, V, Hayward, C, Franke, A, Aulchenko, YS, Johansson, A, Wild, SH, Melville, SA, Isaacs, Aaron, Polasek, O, Ellinghaus, D, Kolcic, I, Nothlings, U, Zgaga, L, Zemunik, T, Gnewuch, C, Schreiber, S, Campbell, S, Hastie, N, Boban, M, Meitinger, T, Oostra, Ben, Riegler, P, Minelli, C, Wright, AF, Campbell, H, Duijn, Cornelia, Gyllensten, U, Wilson, JF, Krawczak, M, Rudan, I, Pramstaller, PP, Pattaro, C, De Grandi, A, Vitart, V, Hayward, C, Franke, A, Aulchenko, YS, Johansson, A, Wild, SH, Melville, SA, Isaacs, Aaron, Polasek, O, Ellinghaus, D, Kolcic, I, Nothlings, U, Zgaga, L, Zemunik, T, Gnewuch, C, Schreiber, S, Campbell, S, Hastie, N, Boban, M, Meitinger, T, Oostra, Ben, Riegler, P, Minelli, C, Wright, AF, Campbell, H, Duijn, Cornelia, Gyllensten, U, Wilson, JF, Krawczak, M, Rudan, I, and Pramstaller, PP
- Abstract
Background: Serum creatinine (S-CR) is the most important biomarker for a quick and non-invasive assessment of kidney function in population-based surveys. A substantial proportion of the inter-individual variability in SCR level is explicable by genetic factors. Methods: We performed a meta-analysis of genome-wide association studies of SCR undertaken in five population isolates ('discovery cohorts'), all of which are part of the European Special Population Network (EUROSPAN) project. Genes showing the strongest evidence for an association with SCR (candidate loci) were replicated in two additional population-based samples ('replication cohorts'). Results: After the discovery meta-analysis, 29 loci were selected for replication. Association between SCR level and polymorphisms in the collagen type XXII alpha 1 (COL22A1) gene, on chromosome 8, and in the synaptotagmin-1 (SYT1) gene, on chromosome 12, were successfully replicated in the replication cohorts (p value = 1.0 x 10(-6) and 1.7 x 10(-4), respectively). Evidence of association was also found for polymorphisms in a locus including the gamma-aminobutyric acid receptor rho-2 (GABRR2) gene and the ubiquitin-conjugating enzyme E2-J1 (UBE2J1) gene (replication p value = 3.6 x 10(-3)). Previously reported findings, associating glomerular filtration rate with SNPs in the uromodulin (UMOD) gene and in the schroom family member 3 (SCHROOM3) gene were also replicated. Conclusions: While confirming earlier results, our study provides new insights in the understanding of the genetic basis of serum creatinine regulatory processes. In particular, the association with the genes SYT1 and GABRR2 corroborate previous findings that highlighted a possible role of the neurotransmitters GABA(A) receptors in the regulation of the glomerular basement membrane and a possible interaction between GABA(A)receptors and synaptotagmin-I at the podocyte level.
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- 2010
20. Genetic determinants of circulating sphingolipid concentrations in European populations
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Hicks, A.A. (Andrew), Pramstaller, P.P. (Peter Paul), Johansson, A. (Åsa), Vitart, V. (Veronique), Rudan, I. (Igor), Ugocsai, P. (Peter), Aulchenko, Y.S. (Yurii), Franklin, C.S. (Christopher), Liebisch, G. (Gerhard), Jonasson, I. (Inger), Zorkoltseva, I.V. (Irina), Pattaro, C. (Cristian), Hayward, C. (Caroline), Isaacs, A.J. (Aaron), Hengstenberg, C. (Christian), Campbell, S. (Susan), Gnewuch, C. (Carsten), Janssens, A.C.J.W. (Cécile), Kirichenko, A.V. (Anatoly), König, I.R. (Inke), Marroni, F. (Fabio), Polasek, O. (Ozren), Demirkan, A. (Ayşe), Kolcic, I. (Ivana), Schwienbacher, C. (Christine), Igl, W. (Wilmar), Biloglav, Z. (Zrinka), Witteman, J.C.M. (Jacqueline), Pichler, I. (Irene), Zaboli, G. (Ghazal), Axenovich, T.I. (Tatiana), Peters, A. (Annette), Schreiber, S. (Stefan), Wichmann, H.E. (Heinz Erich), Erdmann, J. (Jeanette), Schunkert, H. (Heribert), Hastie, N. (Nick), Oostra, B.A. (Ben), Wild, S.H. (Sarah), Meitinger, T. (Thomas), Gyllensten, U. (Ulf), Tikka-Kleemola, P. (Päivi), Wilson, J.F. (James), Wright, A.F. (Alan), Schmitz, G. (Gerd), Hicks, A.A. (Andrew), Pramstaller, P.P. (Peter Paul), Johansson, A. (Åsa), Vitart, V. (Veronique), Rudan, I. (Igor), Ugocsai, P. (Peter), Aulchenko, Y.S. (Yurii), Franklin, C.S. (Christopher), Liebisch, G. (Gerhard), Jonasson, I. (Inger), Zorkoltseva, I.V. (Irina), Pattaro, C. (Cristian), Hayward, C. (Caroline), Isaacs, A.J. (Aaron), Hengstenberg, C. (Christian), Campbell, S. (Susan), Gnewuch, C. (Carsten), Janssens, A.C.J.W. (Cécile), Kirichenko, A.V. (Anatoly), König, I.R. (Inke), Marroni, F. (Fabio), Polasek, O. (Ozren), Demirkan, A. (Ayşe), Kolcic, I. (Ivana), Schwienbacher, C. (Christine), Igl, W. (Wilmar), Biloglav, Z. (Zrinka), Witteman, J.C.M. (Jacqueline), Pichler, I. (Irene), Zaboli, G. (Ghazal), Axenovich, T.I. (Tatiana), Peters, A. (Annette), Schreiber, S. (Stefan), Wichmann, H.E. (Heinz Erich), Erdmann, J. (Jeanette), Schunkert, H. (Heribert), Hastie, N. (Nick), Oostra, B.A. (Ben), Wild, S.H. (Sarah), Meitinger, T. (Thomas), Gyllensten, U. (Ulf), Tikka-Kleemola, P. (Päivi), Wilson, J.F. (James), Wright, A.F. (Alan), and Schmitz, G. (Gerd)
- Abstract
Sphingolipids have essential roles as structural components of cell membranes and in cell signalling, and disruption of their metabolism causes several diseases, with diverse neurological, psychiatric, and metabolic consequences. Increasingly, variants within a few of the genes that encode enzymes involved in sphingolipidmetabolismare being associated with complex disease phenotypes. Direct experimental evidence supports a role of specific sphingolipid species in several common complex chronic disease processes including atherosclerotic plaque formation, myocardial infarction (MI), cardiomyopathy, pancreatic b-cell failure, insulin resistance, and type 2 diabetes mellitus. Therefore, sphingolipids represent novel and important intermediate phenotypes for genetic analysis, yet little is known about the major genetic variants that influence their circulating levels in the general population. We performed a genome-wide association study (GWAS) between 318,237 single-nucleotide polymorphisms (SNPs) and levels of circulating sphingomyelin (SM), dihydrosphingomyelin (Dih-SM), ceramide (Cer), and glucosylceramide (GluCer) single lipid species (33 traits); and 43 matchedmetabolite ratiosmeasured in 4,400 subjects from five diverse European populations. Associated variants (32) in five genomic regions were identified with genome-wide significant corrected p-values ranging down to 9.08610266. The strongest associations were observed in or near 7 genes functionally involved in ceramide biosynthesis and trafficking: SPTLC3, LASS4, SGPP1, ATP10D, and FADS1-3. Variants in3 loci (ATP10D, FADS3, and SPTLC3) associate with MI in a series of th
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- 2009
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21. Genetic Determinants of Circulating Sphingolipid Concentrations in European Populations
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Hicks, AA, Pramstaller, PP, Johansson, A, Vitart, V, Rudan, I, Ugocsai, P, Aulchenko, Yuriy, Franklin, CS, Liebisch, G, Erdmann, J, Jonasson, I, Zorkoltseva, IV, Pattaro, C, Hayward, C, Isaacs, Aaron, Hengstenberg, C, Campbell, S, Gnewuch, C, Janssens, Cecile, Kirichenko, AV, Konig, IR, Marroni, F, Polasek, O, Demirkan, Ayse, Kolcic, I, Schwienbacher, C, Igl, W, Biloglav, Z, Witteman, JCM, Pichler, I, Zaboli, G, Axenovich, TI, Peters, A, Schreiber, S, Wichmann, HE, Schunkert, H, Hastie, N, Oostra, Ben, Wild, SH, Meitinger, T, Gyllensten, U, Duijn, Cornelia, Wilson, JF, Wright, A, Schmitz, G, Campbell, H, Hicks, AA, Pramstaller, PP, Johansson, A, Vitart, V, Rudan, I, Ugocsai, P, Aulchenko, Yuriy, Franklin, CS, Liebisch, G, Erdmann, J, Jonasson, I, Zorkoltseva, IV, Pattaro, C, Hayward, C, Isaacs, Aaron, Hengstenberg, C, Campbell, S, Gnewuch, C, Janssens, Cecile, Kirichenko, AV, Konig, IR, Marroni, F, Polasek, O, Demirkan, Ayse, Kolcic, I, Schwienbacher, C, Igl, W, Biloglav, Z, Witteman, JCM, Pichler, I, Zaboli, G, Axenovich, TI, Peters, A, Schreiber, S, Wichmann, HE, Schunkert, H, Hastie, N, Oostra, Ben, Wild, SH, Meitinger, T, Gyllensten, U, Duijn, Cornelia, Wilson, JF, Wright, A, Schmitz, G, and Campbell, H
- Abstract
Sphingolipids have essential roles as structural components of cell membranes and in cell signalling, and disruption of their metabolism causes several diseases, with diverse neurological, psychiatric, and metabolic consequences. Increasingly, variants within a few of the genes that encode enzymes involved in sphingolipid metabolism are being associated with complex disease phenotypes. Direct experimental evidence supports a role of specific sphingolipid species in several common complex chronic disease processes including atherosclerotic plaque formation, myocardial infarction (MI), cardiomyopathy, pancreatic beta-cell failure, insulin resistance, and type 2 diabetes mellitus. Therefore, sphingolipids represent novel and important intermediate phenotypes for genetic analysis, yet little is known about the major genetic variants that influence their circulating levels in the general population. We performed a genome-wide association study (GWAS) between 318,237 single-nucleotide polymorphisms (SNPs) and levels of circulating sphingomyelin (SM), dihydrosphingomyelin (Dih-SM), ceramide (Cer), and glucosylceramide (GluCer) single lipid species (33 traits); and 43 matched metabolite ratios measured in 4,400 subjects from five diverse European populations. Associated variants (32) in five genomic regions were identified with genome-wide significant corrected p-values ranging down to 9.08 x 10(-66). The strongest associations were observed in or near 7 genes functionally involved in ceramide biosynthesis and trafficking: SPTLC3, LASS4, SGPP1, ATP10D, and FADS1-3. Variants in 3 loci (ATP10D, FADS3, and SPTLC3) associate with MI in a series of three German MI studies. An additional 70 variants across 23 candidate genes involved in sphingolipid-metabolizing pathways also demonstrate association (p = 10(-4) or less). Circulating concentrations of several key components in sphingolipid metabolism are thus under strong genetic control, and variants in these loci can be tested f
- Published
- 2009
22. ChemInform Abstract: In the Search for New Anticancer Drugs. Part 25. Role of N-Nitrosated Amadori Compounds Derived from Glucose-Amino Acid Conjugates in Cancer Promotion or Inhibition.
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SOSNOVSKY, G., primary, GNEWUCH, C. T., additional, and RYOO, E.-S., additional
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- 2010
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23. ChemInform Abstract: In the Search for New Anticancer Drugs. Part 27. Synthesis and Comparison of Anticancer Activity in vivo of Amino Acids, Carbohydrates, and Carbohydrate-Amino Acid Conjugates Containing the ( N′-(2-Chloroethyl)-N′-nitrosoamino)carbony
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SOSNOVSKY, G., primary and GNEWUCH, C. T., additional
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- 2010
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- View/download PDF
24. ChemInform Abstract: A Critical Appraisal of the Evolution of N‐Nitrosoureas as Anticancer Drugs
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GNEWUCH, C. T., primary and SOSNOVSKY, G., additional
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- 1997
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25. In the Search for New Anticancer Drugs. 27. Synthesis and Comparison of Anticancer Activity in Vivo of Amino Acids, Carbohydrates, and Carbohydrate-Amino Acid Conjugates Containing the [N′‐(2‐chloroethyl)‐N′‐nitrosoamino]carbonyl group
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Sosnovsky, George, primary and Thomas Gnewuch, C., additional
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- 1994
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- View/download PDF
26. In the Search for New Anticancer Drugs. XXV: Role of M-Nitrosated Amadori Compounds Derived from Glucose-Amino Acid Conjugates in Cancer Promotion or Inhibition
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Sosnovsky, George, primary, Thomas Gnewuch, C., additional, and Ryoo, Eui-Sang, additional
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- 1993
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27. Serum bile acid profiling reflects enterohepatic detoxification state and intestinal barrier function in inflammatory bowel disease
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Gnewuch, C, Liebisch, G, Langmann, T, Dieplinger, B, Mueller, T, Haltmayer, M, Dieplinger, H, Zahn, A, Stremmel, W, Rogler, G, and Schmitz, G
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3. Good health
28. ChemInform Abstract: PYRIDIN‐ISOSTERE DER BETA‐ADRENERGISCHEN ANTAGONISTEN VON 2‐P‐NITROPHENYL‐1‐ISOPROPYLAMINO‐2‐AETHANOL UND 3‐P‐NITROPHENOXY‐1‐ISOPROPYLAMINO‐2‐PROPANOL
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GNEWUCH, C. T., primary and FRIEDMAN, H. L., additional
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- 1973
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29. General methods of synthesis of indole alkaloids. VII. Syntheses of dl-dihydrogambirtannine and aspidosperma-strychnos alkaloid models
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Wenkert, Ernest, primary, Dave, K. G., additional, Gnewuch, C. T., additional, and Sprague, P. W., additional
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- 1968
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- View/download PDF
30. ChemInform Abstract: In the Search for New Anticancer Drugs. Part 27. Synthesis and Comparison of Anticancer Activity in vivo of Amino Acids, Carbohydrates, and Carbohydrate-Amino Acid Conjugates Containing the ( N′-(2-Chloroethyl)-N′-nitrosoamino)carbonyl Group.
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SOSNOVSKY, G. and GNEWUCH, C. T.
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- 1995
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31. ChemInform Abstract: In the Search for New Anticancer Drugs. Part 25. Role of N-Nitrosated Amadori Compounds Derived from Glucose-Amino Acid Conjugates in Cancer Promotion or Inhibition.
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SOSNOVSKY, G., GNEWUCH, C. T., and RYOO, E.-S.
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- 1993
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- View/download PDF
32. Renal Recovery after the Implementation of an Electronic Alert and Biomarker-Guided Kidney-Protection Strategy following Major Surgery.
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Halmy L, Riedel J, Zeman F, Tege B, Linder V, Gnewuch C, Graf BM, Schlitt HJ, Bergler T, and Göcze I
- Abstract
Background: The facilitation of early recovery of acute kidney injury (AKI) is an important step to improve outcome, particularly because of the limited therapeutic interventions currently available for AKI. The combination of an electronic alert and biomarker-guided kidney-protection strategy implemented in the routine care may have an impact on the incidence of early complete reversal of AKI after major non-cardiac surgery. Methods: We studied 294 patients in two cohorts before ( n = 151) and after protocol implementation ( n = 143). Data collection required 6 months for each cohort. The kidney-protection protocol included an electronic alert to detect patients who were eligible for urinary biomarker [TIMP2 × IGFBP7]-guided kidney-protection intervention. Intervention was stratified according to three levels of immediate AKI risk: low, moderate, and high. After intervention, postoperative changes in the glomerular filtration rate (eGFR) were identified with a tracking software that included an alert for nephrology consultation if the eGFR had declined by >25% from the preoperative reference value. Primary outcome was early AKI recovery, i.e., the complete reversal of any AKI stage to absence of AKI within the first 7 postoperative days. Results: Protocol implementation significantly increased the recovery of AKI (36/46, 78% compared to control 27/48, 56%, ( p = 0.025)) and reduced the length of the ICU stay ( p < 0.001). There was no significant difference in the overall incidence of all AKI and moderate and severe AKI in the first 7 postoperative days: 46/143 (32%) and 12/151 (8%) in the protocol implementation group compared to 48/151 (32%) and 18/151 (12%) in the historical control group. Patients with AKI reversal within the first 7 postoperative days had lower in-hospital mortality than patients without AKI reversal. Conclusions: Implementing a combined electronic alert and biomarker-guided kidney-protection strategy in routine care improved early recovery of AKI after major surgery.
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- 2021
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33. Biomarker-guided Intervention to Prevent Acute Kidney Injury After Major Surgery: The Prospective Randomized BigpAK Study.
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Göcze I, Jauch D, Götz M, Kennedy P, Jung B, Zeman F, Gnewuch C, Graf BM, Gnann W, Banas B, Bein T, Schlitt HJ, and Bergler T
- Subjects
- Abdomen surgery, Acute Kidney Injury diagnosis, Acute Kidney Injury metabolism, Aged, Biomarkers urine, Creatinine blood, Female, Humans, Length of Stay, Male, Middle Aged, Prospective Studies, Acute Kidney Injury prevention & control, Critical Care methods, Digestive System Surgical Procedures, Insulin-Like Growth Factor Binding Proteins urine, Patient Care Bundles methods, Tissue Inhibitor of Metalloproteinase-2 urine
- Abstract
Objective: To determine the impact of renal biomarker-guided implementation of the Kidney Disease Improving Global Outcomes (KDIGO) care bundle on the incidence of acute kidney injury (AKI) after major noncardiac surgery in a single-center unblinded randomized clinical trial., Background: Early optimization of volume status and discontinuation of nephrotoxic medication before the occurrence of AKI may be the crucial step to reduce preventable AKI., Methods: The urinary biomarker-triggered KDIGO care bundle (early optimization of fluid status, maintenance of perfusion pressure, discontinuation of nephrotoxic agents) was compared to standard intensive care unit (ICU) care in 121 patients with an increased AKI risk after major abdominal surgery that was determined by urinary biomarker (inhibitor of metalloproteinase-2 × insulin-like growth factor-binding protein 7) >0.3. Incidence of overall AKI, severity of AKI, length of stay, major kidney events at discharge, and cost effectiveness were evaluated., Results: The overall stages of AKI were not statistically different between the 2 groups, but in patients with inhibitor of metalloproteinase-2 × insulin-like growth factor-binding protein 7 values of 0.3 to 2.0 a subgroup analysis demonstrated a significantly reduced incidence of AKI 13/48 (27.1%) in the intervention group compared to control 24/50 (48.0%, P = 0.03). Incidence of moderate and severe AKI (P = 0.04), incidence of creatinine increase >25% of baseline value (P = 0.01), length of ICU, and hospital stay (P = 0.04) were significantly lower in the intervention group. Intervention was associated with cost reduction. There were no significant differences regarding renal replacement therapy, in-hospital mortality, or major kidney events at hospital discharge., Conclusions: Early biomarker-based prediction of imminent AKI followed by implementation of KDIGO care bundle reduced AKI severity, postoperative creatinine increase, length of ICU, and hospital stay in patients after major noncardiac surgery.
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- 2018
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34. Potential cost savings by dose down-rounding of monoclonal antibodies in a community cancer center.
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Copur MS, Gnewuch C, Schriner M, Tharnish M, Gonen M, McDonald M, Kezeor J, Ramaekers RC, Gauchan D, Clark D, Greenwalt L, Mickey M, and Norvell M
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- Antibodies, Monoclonal economics, Cancer Care Facilities economics, Humans, Neoplasm Metastasis, Antibodies, Monoclonal administration & dosage, Antineoplastic Agents, Immunological administration & dosage, Antineoplastic Agents, Immunological economics, Cost Savings, Drug Costs, Neoplasms drug therapy
- Abstract
Purpose Increasing new cancer cases and approval of effective but expensive new drugs extending survival have led to unsustainable cancer care costs. Potential cost savings by a hypothetical dose down-rounding project of monoclonal antibodies at a community-based cancer center is presented. Methods From October 2014 through October 2015, metastatic cancer patients receiving monoclonal antibodies at CHI-Health St Francis Cancer Treatment Center in Grand Island, Nebraska, were identified through electronic health records. A total of 11 different types of monoclonal antibodies that were administered during the study period were identified. Trastuzumab, ofatumumab, and obinutuzumab did not require dose-rounding; thus, they were excluded from the analyses. Available vial size(s) and costs per milligram per average wholesale price for each monoclonal antibody were recorded. Costs of actual amounts prescribed were compared to the costs of theoretically reduced ≤5% and ≤10% doses rounded to the nearest vial sizes. Reduced doses resulting in a decreased number of opened vials qualified for meaningful dose down-rounding and were included in the analysis. Average actual dose reduction percentage resulting in cost savings for both groups was also calculated. Results A total of 728 doses of eight monoclonal antibodies suitable for dose down-rounding were identified. Vial sizes of pembrolizumab and ipilimumab did not allow for a meaningful dose down-rounding. At the ≤5% dose down-rounding, 255 of 728 doses (35%) qualified with a potential annual cost savings of $220,793.80. At the ≤10% dose down-rounding, 526 of 728 doses (72%) qualified with a potential annual cost savings of $454,461.00. The average actual dose reduction was 2.4% for the ≤5% dose reduction group and 4.9% for the ≤10% dose reduction group. Overall average cost savings per qualifying dose reduction was around $865.00. More doses qualified for cost savings in the ≤10% dose reduction group. Significant differences between different monoclonal antibodies for dose rounding at either ≤5% (p = 0.002) or ≤10% (p < 0.001) were observed. Conclusion A practical dose down-rounding procedure may allow significant cost reduction in metastatic cancer setting, where the cure is not the goal. Drug waste can be avoided by convenient vial sizes or can even be eliminated by lyophilized forms like in trastuzumab. Our data reflect the monoclonal antibody use and potential cost savings with the proposed dose down-rounding approach in a community-based cancer program.
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- 2018
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35. ApoE is a major determinant of hepatic bile acid homeostasis in mice.
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von Hardenberg S, Gnewuch C, Schmitz G, and Borlak J
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- Animals, Apolipoproteins E genetics, Bile Acids and Salts analysis, Chenodeoxycholic Acid metabolism, Cholesterol Esters metabolism, Cholic Acids metabolism, Cytochrome P-450 Enzyme System genetics, Cytochrome P-450 Enzyme System metabolism, Diet, High-Fat, Gallbladder metabolism, Homeostasis, Male, Mice, Mutant Strains, Sterol Regulatory Element Binding Protein 1 genetics, Sterol Regulatory Element Binding Protein 1 metabolism, Transcription Factors genetics, Transcription Factors metabolism, Apolipoproteins E metabolism, Bile Acids and Salts metabolism, Liver metabolism
- Abstract
Apolipoprotein E (ApoE) plays a central role in lipid transport and cholesterol metabolism, with surplus cholesterol being removed from the liver through bile acid (BA) synthesis. Furthermore, BAs are of critical importance in fat absorption by forming intestinal lipid-bile salt mixed micelles. To define ApoE's role in BA homeostasis, the metabolism of cholesterol and BA was investigated in liver tissue and gallbladder bile of ApoE-deficient mice given a chow or high-cholesterol/high-fat diet (HCHF) diet for 6 months. When compared to wild-type mice, muricholic acid (MCA) and chenodeoxycholic acid (CDCA) increased approximately 15-, 82-, 22- and 38-fold, respectively, in hepatic tissue of ApoE-deficient mice given a chow or HCHF diet. Moreover, ApoE-deficient mice on an HCHF diet increased the amounts of hepatic free cholesterol, MCA and CDCA by 61%, 61% and 50% (P<.05). Conversely, total cholesterol and cholesterol esters were unchanged, and the bile acids taurohyodeoxycholic acid, taurodeoxycholic acid and hyodeoxycholic acid decreased to one third as compared to the chow diet (P<.05). Additionally, quantitative reverse-transcription polymerase chain reaction assays revealed induced expression of the bile acid receptor (Fxr) and associated transcription factors, i.e.Fxr, Lrh, Lxra and Srebp1c. Transcript expression of Cyp2a12, Cyp1b1, Cyp2e1, Cyp3a16 and Cyp4a10 was also induced. Note that Cyp4a10 catalyzes ω-hydroxylation of arachidonic acid to epoxy- and hydroxyeicosatrienoic acids to control vascular tone. Altogether, MCA and CDCA synthesis is selectively induced in ApoE-deficient mice. These hydrophilic BAs alter micellar size and structure to lower intestinal cholesterol solubilization. Furthermore, CDCA and MCA are potent FXR agonist and antagonist, respectively, and function in a regulatory loop to mitigate impaired ApoE function., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2018
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36. Limited comparability of creatinine assays in patients with liver cirrhosis and their impact on the MELD score.
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Kaiser T, Kinny-Köster B, Gnewuch C, Karailieva D, Kiehntopf M, Kessler A, Ritter-Sket C, Schmidt M, Brand K, Thiery J, and Lichtinghagen R
- Abstract
Background & Aim: Patients with end-stage liver disease require valid estimations of mortality for organ allocation and risk stratification. The model of end-stage liver disease (MELD) score is used for this purpose in most countries and incorporates bilirubin, International Normalized ratio, and creatinine. The aim of this study was to evaluate the comparability of creatinine results from different routine assays in the serum samples of patients with liver cirrhosis., Methods: Residual material from 60 serum samples was available from patients in different stages of liver cirrhosis. Four centers participated; each center analyzed the samples with Jaffé-based and enzymatic routine assays in parallel. In addition, an accredited calibration laboratory certified the panel of samples by an internationally accepted reference measurement procedure (RMP) based on isotope dilution mass spectrometry (ID-MS). This method served as the independent reference., Results: All routine methods displayed a high correlation to the RMP (r ≥0.937, p<0.001). Two enzymatic and two Jaffé-based methods provided results that were all within a ±20% range of the RMP. The other methods showed deviations >20% in up to 27% of the samples. The enzymatic methods were systematically lower, whereas the Jaffé-based methods were systematically higher (p<0.001). The resulting MELD scores differed from 0 to 4 points., Conclusions: There are systematic deviations from the RMP. Jaffé-based assays gave higher results, whereas the enzymatic-based assays gave lower results compared to the results of the RMP. The comparability of results is limited and could be disadvantageous to patients listed for liver transplantation.
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- 2017
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37. Genomewide meta-analysis identifies loci associated with IGF-I and IGFBP-3 levels with impact on age-related traits.
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Teumer A, Qi Q, Nethander M, Aschard H, Bandinelli S, Beekman M, Berndt SI, Bidlingmaier M, Broer L, Cappola A, Ceda GP, Chanock S, Chen MH, Chen TC, Chen YD, Chung J, Del Greco Miglianico F, Eriksson J, Ferrucci L, Friedrich N, Gnewuch C, Goodarzi MO, Grarup N, Guo T, Hammer E, Hayes RB, Hicks AA, Hofman A, Houwing-Duistermaat JJ, Hu F, Hunter DJ, Husemoen LL, Isaacs A, Jacobs KB, Janssen JA, Jansson JO, Jehmlich N, Johnson S, Juul A, Karlsson M, Kilpelainen TO, Kovacs P, Kraft P, Li C, Linneberg A, Liu Y, Loos RJ, Lorentzon M, Lu Y, Maggio M, Magi R, Meigs J, Mellström D, Nauck M, Newman AB, Pollak MN, Pramstaller PP, Prokopenko I, Psaty BM, Reincke M, Rimm EB, Rotter JI, Saint Pierre A, Schurmann C, Seshadri S, Sjögren K, Slagboom PE, Strickler HD, Stumvoll M, Suh Y, Sun Q, Zhang C, Svensson J, Tanaka T, Tare A, Tönjes A, Uh HW, van Duijn CM, van Heemst D, Vandenput L, Vasan RS, Völker U, Willems SM, Ohlsson C, Wallaschofski H, and Kaplan RC
- Subjects
- Adult, Aging blood, Female, Gene Expression Regulation, Humans, Insulin-Like Growth Factor Binding Protein 3 blood, Male, Metabolome genetics, Quantitative Trait Loci genetics, Regulatory Sequences, Nucleic Acid genetics, Aging genetics, Genome-Wide Association Study, Insulin-Like Growth Factor Binding Protein 3 genetics, Insulin-Like Growth Factor I genetics, Quantitative Trait, Heritable
- Abstract
The growth hormone/insulin-like growth factor (IGF) axis can be manipulated in animal models to promote longevity, and IGF-related proteins including IGF-I and IGF-binding protein-3 (IGFBP-3) have also been implicated in risk of human diseases including cardiovascular diseases, diabetes, and cancer. Through genomewide association study of up to 30 884 adults of European ancestry from 21 studies, we confirmed and extended the list of previously identified loci associated with circulating IGF-I and IGFBP-3 concentrations (IGF1, IGFBP3, GCKR, TNS3, GHSR, FOXO3, ASXL2, NUBP2/IGFALS, SORCS2, and CELSR2). Significant sex interactions, which were characterized by different genotype-phenotype associations between men and women, were found only for associations of IGFBP-3 concentrations with SNPs at the loci IGFBP3 and SORCS2. Analyses of SNPs, gene expression, and protein levels suggested that interplay between IGFBP3 and genes within the NUBP2 locus (IGFALS and HAGH) may affect circulating IGF-I and IGFBP-3 concentrations. The IGF-I-decreasing allele of SNP rs934073, which is an eQTL of ASXL2, was associated with lower adiposity and higher likelihood of survival beyond 90 years. The known longevity-associated variant rs2153960 (FOXO3) was observed to be a genomewide significant SNP for IGF-I concentrations. Bioinformatics analysis suggested enrichment of putative regulatory elements among these IGF-I- and IGFBP-3-associated loci, particularly of rs646776 at CELSR2. In conclusion, this study identified several loci associated with circulating IGF-I and IGFBP-3 concentrations and provides clues to the potential role of the IGF axis in mediating effects of known (FOXO3) and novel (ASXL2) longevity-associated loci., (© 2016 The Authors. Aging Cell published by the Anatomical Society and John Wiley & Sons Ltd.)
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- 2016
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38. Estimation of creatinine clearance using plasma creatinine or cystatin C: a secondary analysis of two pharmacokinetic studies in surgical ICU patients.
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Steinke T, Moritz S, Beck S, Gnewuch C, and Kees MG
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- Adult, Aged, Aged, 80 and over, Anti-Bacterial Agents pharmacokinetics, Creatinine urine, Critical Care, Female, Glomerular Filtration Rate physiology, Humans, Kidney Function Tests methods, Male, Middle Aged, ROC Curve, Vancomycin pharmacokinetics, Young Adult, beta-Lactams pharmacokinetics, Creatinine blood, Cystatin C blood
- Abstract
Background: In ICU patients, glomerular filtration is often impaired, but also supraphysiological values are observed ("augmented renal clearance", >130 mL/min/1.73 m(2)). Renally eliminated drugs (e.g. many antibiotics) must be adjusted accordingly, which requires a quantitative measure of renal function throughout all the range of clinically encountered values. Estimation from plasma creatinine is standard, but cystatin C may be a valuable alternative., Methods: This was a secondary analysis of renal function parameters in 100 ICU patients from two pharmacokinetic studies on vancomycin and betalactam antibiotics. Estimated clearance values obtained by the Cockcroft-Gault formula (eCLCG), the CKD-EPI formula (eCLCKD-EPI) or the cystatin C based Hoek formula (eCLHoek) were compared with the measured endogenous creatinine clearance (CLCR). Agreement of values was assessed by modified Bland-Altman plots and by calculating bias (median error) and precision (median absolute error). Sensitivity and specificity of estimates to identify patients with reduced (<60 mL/min/1.73 m(2)) or augmented (>130 mL/min/1.73 m(2)) CLCR were calculated., Results: The CLCR was well distributed from highly compromised to supraphysiological values (median 73.2, range 16.8-234 mL/min/1.73 m(2)), even when plasma creatinine was not elevated (≤0.8 mg/dL for women, ≤1.1 mg/dL for men). Bias and precision were +13.5 mL/min/1.73 m(2) and ±18.5 mL/min/1.73 m(2) for eCLCG, +7.59 and ±16.8 mL/min/1.73 m(2) for eCLCKD-EPI, and -4.15 and ±12.9 mL/min/1.73 m(2) for eCLHoek, respectively, with eCLHoek being more precise than the other two (p < 0.05). The central 95% of observed errors fell between -59.8 and +250 mL/min/1.73 m(2) for eCLCG, -83.9 and +79.8 mL/min/1.73 m(2) for eCLCKD-EPI, and -103 and +27.9 mL/min/1.73 m(2) for eCLHoek. Augmented renal clearance was underestimated by eCLCKD-EPI and eCLHoek. Patients with reduced CLCR were identified with good specificity by eCLCG, eCLCKD-EPI and eCLHoek (0.95, 0.97 and 0.91, respectively), but with less sensitivity (0.55, 0.55 and 0.83). For augmented renal clearance, specificity was 0.81, 0.96 and 0.96, but sensitivity only 0.69, 0.25 and 0.38., Conclusions: Normal plasma creatinine concentrations can be highly misleading in ICU patients. Agreement of the cystatin C based eCLHoek with CLCR is better than that of the creatinine based eCLCG or eCLCKD-EPI. Detection and quantification of augmented renal clearance by estimates is problematic, and should rather rely on CLCR.
- Published
- 2015
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39. A rat toxicogenomics study with the calcium sensitizer EMD82571 reveals a pleiotropic cause of teratogenicity.
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Hewitt PG, Singh PK, Kumar A, Gnewuch C, Liebisch G, Schmitz G, and Borlak J
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- Animals, Bile Acids and Salts metabolism, Bone and Bones metabolism, Calcium metabolism, Craniofacial Abnormalities chemically induced, Female, Gene Expression Profiling, Liver drug effects, Liver pathology, Neural Tube Defects chemically induced, Neurulation drug effects, Oligonucleotide Array Sequence Analysis, Organ Size drug effects, Osteogenesis, Pregnancy, Rats, Wistar, Toxicogenetics, Phosphodiesterase 3 Inhibitors toxicity, Quinolines toxicity, Teratogens toxicity, Thiadiazines toxicity
- Abstract
The calcium sensitizer and PDEIII inhibitor EMD82571 caused exencephaly, micrognathia, agnathia and facial cleft in 58% of fetuses. In pursue of mechanisms and to define adverse outcome pathways pregnant Wistar rats were dosed daily with either EMD82571 (50 or 150mg/kg/day) or retinoic acid (12mg/kg/day) on gestational days 6-11 and 6-17, respectively. Hypothesis driven and whole genome microarray experiments were performed with whole embryo, maternal liver, embryonic liver and malformed bone at gestational days 12 and 20. This revealed regulation of genes critically involved in osteogenesis, odontogenesis, differentiation and development and extracellular matrix. Importantly, repression of osteocalcin and members of TGF-β/BMP signaling hampered osteo- and odontogenesis. Furthermore, EMD82571 impaired neurulation by inhibiting mid hinge point formation to cause neural tube defects. Taken collectively, a molecular rationale for the observed teratogenicity induced by EMD82571 is presented that links molecular initiating events with AOPs., (Copyright © 2014 Elsevier Inc. All rights reserved.)
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- 2014
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40. Animal source food intake and association with blood cholesterol, glycerophospholipids and sphingolipids in a northern Swedish population.
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Igl W, Kamal-Eldin A, Johansson A, Liebisch G, Gnewuch C, Schmitz G, and Gyllensten U
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- Animals, Animals, Wild, Cholesterol, HDL blood, Cholesterol, LDL blood, Female, Humans, Male, Middle Aged, Motor Activity, Risk Factors, Sweden epidemiology, Triglycerides blood, Cholesterol blood, Diet statistics & numerical data, Glycerophospholipids blood, Meat adverse effects, Sphingolipids blood
- Abstract
Background: The high intake of game meat in populations with a subsistence-based diet may affect their blood lipids and health status., Objective: To examine the association between diet and circulating levels of blood lipid levels in a northern Swedish population., Study Design: We compared a group with traditional lifestyle (TLS) based on reindeer herding (TLS group) with those from the same area with a non-traditional lifestyle (NTLS) typical of more industrialized regions of Sweden (NTLS group). The analysis was based on self-reported intake of animal source food (i.e. non-game meat, game meat, fish, dairy products and eggs) and the serum blood level of a number of lipids [total cholesterol (TC), low-density lipoprotein cholesterol (LDL), high-density lipoprotein cholesterol (HDL), triglycerides (TG), glycerophospholipids and sphingolipids]., Results: The TLS group had higher cholesterol, LDL and HDL levels than the reference group. Of the TLS group, 65% had cholesterol levels above the threshold for increased risk of coronary heart disease (≥ 240 mg/dl), as compared to 38% of the NTLS group. Self-reported consumption of game meat was positively associated with TC and LDL., Conclusions: The high game meat consumption of the TLS group is associated with increased cholesterol levels. High intake of animal protein and fat and low fibre is known to increase the risk of cardiovascular disease, but other studies of the TLS in northern Sweden have shown comparable incidences of cardiovascular disease to the reference (NTLS) group from the same geographical area. This indicates that factors other than TC influence disease risk. One such possible factor is dietary phospholipids, which are also found in high amounts specifically in game meat and have been shown to inhibit cholesterol absorption.
- Published
- 2013
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41. Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.
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Demirkan A, van Duijn CM, Ugocsai P, Isaacs A, Pramstaller PP, Liebisch G, Wilson JF, Johansson Å, Rudan I, Aulchenko YS, Kirichenko AV, Janssens AC, Jansen RC, Gnewuch C, Domingues FS, Pattaro C, Wild SH, Jonasson I, Polasek O, Zorkoltseva IV, Hofman A, Karssen LC, Struchalin M, Floyd J, Igl W, Biloglav Z, Broer L, Pfeufer A, Pichler I, Campbell S, Zaboli G, Kolcic I, Rivadeneira F, Huffman J, Hastie ND, Uitterlinden A, Franke L, Franklin CS, Vitart V, Nelson CP, Preuss M, Bis JC, O'Donnell CJ, Franceschini N, Witteman JC, Axenovich T, Oostra BA, Meitinger T, Hicks AA, Hayward C, Wright AF, Gyllensten U, Campbell H, and Schmitz G
- Subjects
- Carotid Intima-Media Thickness, Databases, Genetic, Delta-5 Fatty Acid Desaturase, Diabetes Mellitus, Type 2 blood, Diabetes Mellitus, Type 2 genetics, Genetic Loci, Humans, Polymorphism, Single Nucleotide, Genome, Human, Genome-Wide Association Study, Phospholipids blood, Phospholipids genetics, Sphingolipids blood, Sphingolipids genetics, White People genetics
- Abstract
Phospho- and sphingolipids are crucial cellular and intracellular compounds. These lipids are required for active transport, a number of enzymatic processes, membrane formation, and cell signalling. Disruption of their metabolism leads to several diseases, with diverse neurological, psychiatric, and metabolic consequences. A large number of phospholipid and sphingolipid species can be detected and measured in human plasma. We conducted a meta-analysis of five European family-based genome-wide association studies (N = 4034) on plasma levels of 24 sphingomyelins (SPM), 9 ceramides (CER), 57 phosphatidylcholines (PC), 20 lysophosphatidylcholines (LPC), 27 phosphatidylethanolamines (PE), and 16 PE-based plasmalogens (PLPE), as well as their proportions in each major class. This effort yielded 25 genome-wide significant loci for phospholipids (smallest P-value = 9.88×10(-204)) and 10 loci for sphingolipids (smallest P-value = 3.10×10(-57)). After a correction for multiple comparisons (P-value<2.2×10(-9)), we observed four novel loci significantly associated with phospholipids (PAQR9, AGPAT1, PKD2L1, PDXDC1) and two with sphingolipids (PLD2 and APOE) explaining up to 3.1% of the variance. Further analysis of the top findings with respect to within class molar proportions uncovered three additional loci for phospholipids (PNLIPRP2, PCDH20, and ABDH3) suggesting their involvement in either fatty acid elongation/saturation processes or fatty acid specific turnover mechanisms. Among those, 14 loci (KCNH7, AGPAT1, PNLIPRP2, SYT9, FADS1-2-3, DLG2, APOA1, ELOVL2, CDK17, LIPC, PDXDC1, PLD2, LASS4, and APOE) mapped into the glycerophospholipid and 12 loci (ILKAP, ITGA9, AGPAT1, FADS1-2-3, APOA1, PCDH20, LIPC, PDXDC1, SGPP1, APOE, LASS4, and PLD2) to the sphingolipid pathways. In large meta-analyses, associations between FADS1-2-3 and carotid intima media thickness, AGPAT1 and type 2 diabetes, and APOA1 and coronary artery disease were observed. In conclusion, our study identified nine novel phospho- and sphingolipid loci, substantially increasing our knowledge of the genetic basis for these traits., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2012
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42. Glycomics meets lipidomics--associations of N-glycans with classical lipids, glycerophospholipids, and sphingolipids in three European populations.
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Igl W, Polašek O, Gornik O, Knežević A, Pučić M, Novokmet M, Huffman J, Gnewuch C, Liebisch G, Rudd PM, Campbell H, Wilson JF, Rudan I, Gyllensten U, Schmitz G, and Lauc G
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Chromatography, High Pressure Liquid methods, Chromatography, Ion Exchange, Europe, Female, Glycomics, Humans, Hydrophobic and Hydrophilic Interactions, Lipids blood, Male, Middle Aged, Polysaccharides chemistry, Polysaccharides isolation & purification, Spectrometry, Mass, Electrospray Ionization, Tandem Mass Spectrometry, Young Adult, Lipids chemistry, Polysaccharides blood
- Abstract
Recently, high-throughput technologies have been made available which allow the measurement of a broad spectrum of glycomics and lipidomics parameters in many samples. The aim of this study was to apply these methods and investigate associations between 46 glycan and 183 lipid traits measured in blood of 2041 Europeans from three different local populations (Croatia - VIS cohort; Sweden - NSPHS cohort; Great Britain - ORCADES cohort). N-glycans have been analyzed with High Performance Liquid Chromatography (HPLC) and lipids with Electrospray Ionization Tandem Mass Spectrometry (ESI-MS/MS) covering sterol lipids, glycerolipids, glycerophospholipids and sphingolipids in eight subclasses. Overall, 8418 associations were calculated using linear mixed effect models adjusted for pedigree, sex, age and multiple testing. We found 330 significant correlations in VIS. Pearson's correlation coefficient r ranged from -0.27 to 0.34 with corresponding p-values between 1.45 × 10(-19) and 4.83 × 10(-6), indicating statistical significance. A total of 71 correlations in VIS could be replicated in NSPHS (r = [-0.19; 0.35], p = [4.16 × 10(-18); 9.38 × 10(-5)]) and 31 correlations in VIS were also found in ORCADES (r = [-0.20; 0.24], p = [2.69 × 10(-10); 7.55 × 10(-5)]). However, in total only 10 correlations between a subset of triantennary glycans and unsaturated phosphatidylcholine, saturated ceramide, and sphingomyelin lipids in VIS (r = [0.18; 0.34], p = [2.98 × 10(-21); 1.69 × 10(-06)]) could be replicated in both NSPHS and ORCADES. In summary, the results show strong and consistent associations between certain glycans and lipids in all populations, but also population-specific correlations which may be caused by environmental and genetic differences. These associations point towards potential interactive metabolic pathways.
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- 2011
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43. Identification of a common variant in the TFR2 gene implicated in the physiological regulation of serum iron levels.
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Pichler I, Minelli C, Sanna S, Tanaka T, Schwienbacher C, Naitza S, Porcu E, Pattaro C, Busonero F, Zanon A, Maschio A, Melville SA, Grazia Piras M, Longo DL, Guralnik J, Hernandez D, Bandinelli S, Aigner E, Murphy AT, Wroblewski V, Marroni F, Theurl I, Gnewuch C, Schadt E, Mitterer M, Schlessinger D, Ferrucci L, Witcher DR, Hicks AA, Weiss G, Uda M, and Pramstaller PP
- Subjects
- Adult, Aged, Aged, 80 and over, Cross-Sectional Studies, Female, Humans, Male, Middle Aged, Polymorphism, Single Nucleotide, Receptors, Transferrin metabolism, Young Adult, Genetic Variation, Iron blood, Receptors, Transferrin genetics
- Abstract
The genetic determinants of variation in iron status are actively sought, but remain incompletely understood. Meta-analysis of two genome-wide association (GWA) studies and replication in three independent cohorts was performed to identify genetic loci associated in the general population with serum levels of iron and markers of iron status, including transferrin, ferritin, soluble transferrin receptor (sTfR) and sTfR-ferritin index. We identified and replicated a novel association of a common variant in the type-2 transferrin receptor (TFR2) gene with iron levels, with effect sizes highly consistent across samples. In addition, we identified and replicated an association between the HFE locus and ferritin and confirmed previously reported associations with the TF, TMPRSS6 and HFE genes. The five replicated variants were tested for association with expression levels of the corresponding genes in a publicly available data set of human liver samples, and nominally statistically significant expression differences by genotype were observed for all genes, although only rs3811647 in the TF gene survived the Bonferroni correction for multiple testing. In addition, we measured for the first time the effects of the common variant in TMPRSS6, rs4820268, on hepcidin mRNA in peripheral blood (n = 83 individuals) and on hepcidin levels in urine (n = 529) and observed an association in the same direction, though only borderline significant. These functional findings require confirmation in further studies with larger sample sizes, but they suggest that common variants in TMPRSS6 could modify the hepcidin-iron feedback loop in clinically unaffected individuals, thus making them more susceptible to imbalances of iron homeostasis.
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- 2011
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44. Clearance of vancomycin during continuous infusion in Intensive Care Unit patients: correlation with measured and estimated creatinine clearance and serum cystatin C.
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Kees MG, Hilpert JW, Gnewuch C, Kees F, and Voegeler S
- Subjects
- Adult, Aged, Aged, 80 and over, Female, Humans, Infusions, Intravenous, Intensive Care Units, Male, Metabolic Clearance Rate, Middle Aged, Statistics as Topic, Anti-Bacterial Agents administration & dosage, Anti-Bacterial Agents pharmacokinetics, Creatinine blood, Cystatin C blood, Serum chemistry, Vancomycin administration & dosage, Vancomycin pharmacokinetics
- Abstract
Vancomycin (VAN) dosing requires adjustment to renal function, which is often estimated using the Cockcroft-Gault formula; however, its precision is poor in Intensive Care Unit (ICU) patients. VAN clearance (CL(Van)) during continuous infusion was prospectively determined in 25 ICU patients [14 male, 11 female; age range 31-82 years; body mass index (BMI) 16.5-41.5 kg/m²; Acute Physiology and Chronic Health Evaluation (APACHE) II score at admission 8-36; creatinine clearance 25-195 mL/min] and its correlation with measured creatinine clearance (CL(Crea)), estimated creatinine clearance using the Cockcroft-Gault formula (CL(CG)) and estimated glomerular filtration rate according to Hoek's formula based on serum cystatin C (GFR(Hoek)) was investigated. The correlation between CL(Van) and CL(Crea) was very good (r²=0.88), but it was rather poor with CL(CG) (r² = 0.37) and was acceptable with GFR(Hoek) (r² = 0.70). For VAN dose adjustments in ICU patients, determination of cystatin C may be an interesting and practical alternative to measured CL(Crea), whereas the Cockcroft-Gault formula should be used with caution., (Copyright © 2010 Elsevier B.V. and the International Society of Chemotherapy. All rights reserved.)
- Published
- 2010
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45. A meta-analysis of genome-wide data from five European isolates reveals an association of COL22A1, SYT1, and GABRR2 with serum creatinine level.
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Pattaro C, De Grandi A, Vitart V, Hayward C, Franke A, Aulchenko YS, Johansson A, Wild SH, Melville SA, Isaacs A, Polasek O, Ellinghaus D, Kolcic I, Nöthlings U, Zgaga L, Zemunik T, Gnewuch C, Schreiber S, Campbell S, Hastie N, Boban M, Meitinger T, Oostra BA, Riegler P, Minelli C, Wright AF, Campbell H, van Duijn CM, Gyllensten U, Wilson JF, Krawczak M, Rudan I, and Pramstaller PP
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Chromosomes, Human, Pair 12 genetics, Chromosomes, Human, Pair 8 genetics, Cohort Studies, Croatia, Germany, Humans, Middle Aged, Polymorphism, Single Nucleotide genetics, Reproducibility of Results, Young Adult, Collagen Type XVII, Autoantigens genetics, Creatinine blood, Genome-Wide Association Study, Non-Fibrillar Collagens genetics, Receptors, GABA-A genetics, Synaptotagmin I genetics, White People genetics
- Abstract
Background: Serum creatinine (S CR) is the most important biomarker for a quick and non-invasive assessment of kidney function in population-based surveys. A substantial proportion of the inter-individual variability in S CR level is explicable by genetic factors., Methods: We performed a meta-analysis of genome-wide association studies of S CR undertaken in five population isolates ('discovery cohorts'), all of which are part of the European Special Population Network (EUROSPAN) project. Genes showing the strongest evidence for an association with SCR (candidate loci) were replicated in two additional population-based samples ('replication cohorts')., Results: After the discovery meta-analysis, 29 loci were selected for replication. Association between SCR level and polymorphisms in the collagen type XXII alpha 1 (COL22A1) gene, on chromosome 8, and in the synaptotagmin-1 (SYT1) gene, on chromosome 12, were successfully replicated in the replication cohorts (p value = 1.0 x 10(-6) and 1.7 x 10(-4), respectively). Evidence of association was also found for polymorphisms in a locus including the gamma-aminobutyric acid receptor rho-2 (GABRR2) gene and the ubiquitin-conjugating enzyme E2-J1 (UBE2J1) gene (replication p value = 3.6 x 10(-3)). Previously reported findings, associating glomerular filtration rate with SNPs in the uromodulin (UMOD) gene and in the schroom family member 3 (SCHROOM3) gene were also replicated., Conclusions: While confirming earlier results, our study provides new insights in the understanding of the genetic basis of serum creatinine regulatory processes. In particular, the association with the genes SYT1 and GABRR2 corroborate previous findings that highlighted a possible role of the neurotransmitters GABAA receptors in the regulation of the glomerular basement membrane and a possible interaction between GABAA receptors and synaptotagmin-I at the podocyte level.
- Published
- 2010
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46. Modeling of environmental effects in genome-wide association studies identifies SLC2A2 and HP as novel loci influencing serum cholesterol levels.
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Igl W, Johansson A, Wilson JF, Wild SH, Polasek O, Hayward C, Vitart V, Hastie N, Rudan P, Gnewuch C, Schmitz G, Meitinger T, Pramstaller PP, Hicks AA, Oostra BA, van Duijn CM, Rudan I, Wright A, Campbell H, and Gyllensten U
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Cohort Studies, Cross-Sectional Studies, Diet, Female, Humans, Life Style, Male, Middle Aged, Models, Genetic, Motor Activity, Pedigree, Polymorphism, Single Nucleotide, Sweden, White People genetics, Young Adult, Cholesterol blood, Genome-Wide Association Study, Glucose Transporter Type 2 genetics, Haptoglobins genetics
- Abstract
Genome-wide association studies (GWAS) have identified 38 larger genetic regions affecting classical blood lipid levels without adjusting for important environmental influences. We modeled diet and physical activity in a GWAS in order to identify novel loci affecting total cholesterol, LDL cholesterol, HDL cholesterol, and triglyceride levels. The Swedish (SE) EUROSPAN cohort (N(SE) = 656) was screened for candidate genes and the non-Swedish (NS) EUROSPAN cohorts (N(NS) = 3,282) were used for replication. In total, 3 SNPs were associated in the Swedish sample and were replicated in the non-Swedish cohorts. While SNP rs1532624 was a replication of the previously published association between CETP and HDL cholesterol, the other two were novel findings. For the latter SNPs, the p-value for association was substantially improved by inclusion of environmental covariates: SNP rs5400 (p(SE,unadjusted) = 3.6 x 10(-5), p(SE,adjusted) = 2.2 x 10(-6), p(NS,unadjusted) = 0.047) in the SLC2A2 (Glucose transporter type 2) and rs2000999 (p(SE,unadjusted) = 1.1 x 10(-3), p(SE,adjusted) = 3.8 x 10(-4), p(NS,unadjusted) = 0.035) in the HP gene (Haptoglobin-related protein precursor). Both showed evidence of association with total cholesterol. These results demonstrate that inclusion of important environmental factors in the analysis model can reveal new genetic susceptibility loci., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2010
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47. Rapid quantification of bile acids and their conjugates in serum by liquid chromatography-tandem mass spectrometry.
- Author
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Scherer M, Gnewuch C, Schmitz G, and Liebisch G
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- Adult, Bile Acids and Salts chemistry, Female, Humans, Male, Middle Aged, Young Adult, Bile Acids and Salts blood, Chromatography, Liquid methods, Tandem Mass Spectrometry methods
- Abstract
Beside their role as lipid solubilizers, bile acids (BAs) are increasingly appreciated as signaling factors. As ligands of G-protein coupled receptors and nuclear hormone receptors BAs control their own metabolism and act on lipid and energy metabolism. To study BA function in detail, it is necessary to use methods for their quantification covering the structural diversity of this group. Here we present a simple, sensitive liquid chromatography-tandem mass spectrometry (LC-MS/MS) method for the analysis of bile acid profiles in human plasma/serum. Protein precipitation was performed in the presence of stable-isotope labeled internal standards. In contrast to previous LC-MS/MS methods, we used a reversed-phase C18 column with 1.8microm particles and a gradient elution at basic pH. This allows base line separation of 18 bile acid species (free and conjugated) within 6.5min run time and a high sensitivity in negative ion mode with limits of detection below 10nmol/L. Quantification was achieved by standard addition and calibration lines were linear in the tested range up to 28micromol/L. Validation was performed according to FDA guidelines and overall imprecision was below 11% CV for all species. The developed LC-MS/MS method for bile acid quantification is characterized by simple sample preparation, baseline separation of isobaric species, a short analysis time and provides a valuable tool for both, routine diagnostics and the evaluation of BAs as diagnostic biomarkers in large clinical studies.
- Published
- 2009
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48. Changes in HDL-associated apolipoproteins relate to mortality in human sepsis and correlate to monocyte and platelet activation.
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Barlage S, Gnewuch C, Liebisch G, Wolf Z, Audebert FX, Glück T, Fröhlich D, Krämer BK, Rothe G, and Schmitz G
- Subjects
- APACHE, Adult, Aged, Apolipoproteins deficiency, Apolipoproteins immunology, Cholesterol blood, Cholesterol deficiency, Cholesterol, HDL blood, Cholesterol, HDL deficiency, Cholesterol, LDL blood, Female, Germany epidemiology, HLA-DR Antigens blood, Humans, Hypolipoproteinemias blood, Hypolipoproteinemias complications, Hypolipoproteinemias immunology, Logistic Models, Male, Middle Aged, P-Selectin blood, Predictive Value of Tests, Prognosis, Prospective Studies, ROC Curve, Statistics, Nonparametric, Survival Rate, Apolipoprotein A-I blood, Apolipoprotein A-I deficiency, Apolipoproteins B blood, Apolipoproteins B deficiency, Lipoproteins, HDL deficiency, Lipoproteins, HDL immunology, Monocytes immunology, Platelet Activation immunology, Sepsis blood, Sepsis immunology, Sepsis mortality
- Abstract
Objective: Lipoproteins modulate vascular cell function in inflammation. In this study, we analyzed whether plasma concentrations of lipoproteins and apolipoproteins in human sepsis are related to patient survival and the activation of blood monocytes and platelets., Design: Observational study., Setting: Medical and surgical intensive care units (ICU) of a university hospital., Patients: 151 consecutive patients after sepsis criteria had been met for the first time., Interventions: None., Measurements: Plasma lipoproteins, apolipoproteins, platelet CD62P-expression, monocyte HLA-DR-expression, SAPS II-scores (Simplified Acute Physiology Score) and 30-day-mortality were recorded., Results: Total cholesterol, high-density-lipoprotein (HDL) and low-density-lipoprotein (LDL) cholesterol, apolipoprotein (apo)-AI and apo-B were all found to be significantly lower in non-survivors than in survivors. In contrast to other (apo)lipoproteins, apo-AI and HDL cholesterol further decreased in non-survivors during the ICU stay. Logistic regression analysis revealed apo-AI to be an independent predictor of 30-day-mortality. A significant inverse correlation was found for apo-AI/HDL-cholesterol and platelet activation. Later in the course of the disease, HLA-DR expression on monocytes correlated positively to apo-AI and apo-CI concentrations and inversely to the apo-E concentration., Conclusion: Low apo-AI is independently related to 30-day mortality in human sepsis and the decrease in apo-AI/HDL cholesterol correlates to increased platelet activation. Moreover, changes in apolipoproteins supposed to modulate lipopolysaccharide effects, such as apo-CI and apo-E, correlate to monocyte activation.
- Published
- 2009
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49. Genetic determinants of circulating sphingolipid concentrations in European populations.
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Hicks AA, Pramstaller PP, Johansson A, Vitart V, Rudan I, Ugocsai P, Aulchenko Y, Franklin CS, Liebisch G, Erdmann J, Jonasson I, Zorkoltseva IV, Pattaro C, Hayward C, Isaacs A, Hengstenberg C, Campbell S, Gnewuch C, Janssens AC, Kirichenko AV, König IR, Marroni F, Polasek O, Demirkan A, Kolcic I, Schwienbacher C, Igl W, Biloglav Z, Witteman JC, Pichler I, Zaboli G, Axenovich TI, Peters A, Schreiber S, Wichmann HE, Schunkert H, Hastie N, Oostra BA, Wild SH, Meitinger T, Gyllensten U, van Duijn CM, Wilson JF, Wright A, Schmitz G, and Campbell H
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Delta-5 Fatty Acid Desaturase, Female, Genome-Wide Association Study, Genotype, Humans, Male, Middle Aged, Pedigree, Polymorphism, Single Nucleotide, Young Adult, Sphingolipids blood, White People genetics
- Abstract
Sphingolipids have essential roles as structural components of cell membranes and in cell signalling, and disruption of their metabolism causes several diseases, with diverse neurological, psychiatric, and metabolic consequences. Increasingly, variants within a few of the genes that encode enzymes involved in sphingolipid metabolism are being associated with complex disease phenotypes. Direct experimental evidence supports a role of specific sphingolipid species in several common complex chronic disease processes including atherosclerotic plaque formation, myocardial infarction (MI), cardiomyopathy, pancreatic beta-cell failure, insulin resistance, and type 2 diabetes mellitus. Therefore, sphingolipids represent novel and important intermediate phenotypes for genetic analysis, yet little is known about the major genetic variants that influence their circulating levels in the general population. We performed a genome-wide association study (GWAS) between 318,237 single-nucleotide polymorphisms (SNPs) and levels of circulating sphingomyelin (SM), dihydrosphingomyelin (Dih-SM), ceramide (Cer), and glucosylceramide (GluCer) single lipid species (33 traits); and 43 matched metabolite ratios measured in 4,400 subjects from five diverse European populations. Associated variants (32) in five genomic regions were identified with genome-wide significant corrected p-values ranging down to 9.08x10(-66). The strongest associations were observed in or near 7 genes functionally involved in ceramide biosynthesis and trafficking: SPTLC3, LASS4, SGPP1, ATP10D, and FADS1-3. Variants in 3 loci (ATP10D, FADS3, and SPTLC3) associate with MI in a series of three German MI studies. An additional 70 variants across 23 candidate genes involved in sphingolipid-metabolizing pathways also demonstrate association (p = 10(-4) or less). Circulating concentrations of several key components in sphingolipid metabolism are thus under strong genetic control, and variants in these loci can be tested for a role in the development of common cardiovascular, metabolic, neurological, and psychiatric diseases., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2009
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50. Serum bile acid profiling reflects enterohepatic detoxification state and intestinal barrier function in inflammatory bowel disease.
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Gnewuch C, Liebisch G, Langmann T, Dieplinger B, Mueller T, Haltmayer M, Dieplinger H, Zahn A, Stremmel W, Rogler G, and Schmitz G
- Subjects
- Adolescent, Adult, Aged, Chromatography, Liquid, Female, Humans, Inflammatory Bowel Diseases classification, Inflammatory Bowel Diseases diagnosis, Intestines physiology, Intestines surgery, Male, Middle Aged, Spectrometry, Mass, Electrospray Ionization, Young Adult, Bile Acids and Salts analysis, Bile Acids and Salts blood, Inflammatory Bowel Diseases blood, Inflammatory Bowel Diseases physiopathology, Intestines pathology, Intestines physiopathology, Liver metabolism
- Abstract
Aim: To determine free and conjugated serum bile acid (BA) levels in inflammatory bowel disease (IBD) subgroups with defined clinical manifestations., Methods: Comprehensive serum BA profiling was performed in 358 IBD patients and 310 healthy controls by liquid chromatography coupled to electrospray ionization tandem mass spectrometry., Results: Serum levels of hyodeoxycholic acid, the CYP3A4-mediated detoxification product of the secondary BA lithocholic acid (LCA), was increased significantly in Crohn's disease (CD) and ulcerative colitis (UC), while most other serum BA species were decreased significantly. Total BA, total BA conjugate, and total BA glycoconjugate levels were decreased only in CD, whereas total unconjugated BA levels were decreased only in UC. In UC patients with hepatobiliary manifestations, the conjugated primary BAs glycocholic acid, taurocholic acid, and glycochenodeoxycholic acid were as significantly increased as the secondary BAs LCA, ursodeoxycholic acid, and tauroursodeoxycholic acid compared to UC patients without hepatobiliary manifestations. Finally, we found that in ileocecal resected CD patients, the unconjugated primary BAs, cholic acid and chenodeoxycholic acid, were increased significantly compared to controls and patients without surgical interventions., Conclusion: Serum BA profiling in IBD patients that indicates impaired intestinal barrier function and increased detoxification is suitable for advanced diagnostic characterization and differentiation of IBD subgroups with defined clinical manifestations.
- Published
- 2009
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