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Une alternative aux traitements phytosanitaires pour lutter contre le mildiou et l'oïdium de la vigne est le développement de variétés résistantes. Leur création doit intégrer non seulement le niveau de résistance mais également sa durabilité, ainsi que les performances agronomiques notamment la productivité et la composition des baies qui doit convenir à la production de vins de haute qualité. L'Inra (France) a engagé le programme de sélection ResDur, basé sur le pyramidage des facteurs de résistance, en 2000. Il a conduit à l'inscription au catalogue français d'une première série de variétés à résistance polygénique – Artaban, Floreal, Vidoc, Voltis – en 2018. Agroscope (Suisse) a démarré la création de variétés résistantes en 1996, en mobilisant les résistances portées par des variétés allemandes, principalement Bronner. Un premier aboutissement a été l'homologation en Suisse de Divico et Divona, respectivement en 2013 et 2018. En 2009 l'Inra et Agroscope ont démarré un programme de sélection commun, visant à combiner les facteurs de résistance aux maladies présents de manière complémentaire dans leurs lignées respectives. Les croisements réalisés ont généré, après sélection assistée par marqueurs, 400 descendants porteurs des facteurs de résistanceRpv1, Rpv10 et/ou Rpv3 ; Run1, Ren3 et/ou Ren3.2. Leur phénotypage agronomique et œnologique est réalisé dans le cadre d'un réseau d'essais situés dans les deux Instituts à Colmar (FR) et à Pully (CH). Les premières observations pluriannuelles, portant sur 80 descendants, ont permis d'étudier leur stabilité phénotypique pour les caractères de résistance, les traits culturaux et la qualité des vins. A l'issue de cette étape, quinze variétés candidates ont été sélectionnées et installées en essais d'évaluation de leur valeur agronomique, technologique et environnementale (VATE) en Valais (CH), ainsi que dans trois régions françaises (Champagne, Val de Loire, Vallée du Rhône). L'inscription au catalogue des premières co-obtentions Inra/Agroscope est prévue à l'horizon 2024–2025.

The negative effects of plant protection products on the human health and the environment have become a major concern for consumers and politics in Europe. In the last years new policies for risk mitigation and reduction of use of synthetic pesticides has been enforce in Europe and Switzerland. A possible strategy to reduce the use of plant protection products is to spray according to the epidemic of diseases and pests by following decision support systems (DSS). The platform VitiMeteo offers a wide set of forecasting models for viticulture including downy and powdery mildew, black rot, grape berry moth and rust mite. Two research institutes the Staatliches Weinbauinstitut Freiburg (Germany) and Agroscope (Switzerland) developed VitiMeteo jointly. A consortium was built with the company Geosens (Germany) which is in charge of the programming of the different forecasting software. Each institute is running his own internet website with specific tools and feature for each country but the core of the system is the same. The combination of these different DSS allows a significant reduction of plant protection products used. All these forecasting systems and tools are freely available for the winegrowers on the platform www.vitimeteo.de and www.agrometeo.ch. The use of these platforms helps the winegrowers to meet current society's expectations.

Switzerland is a pioneer country in the development of integrated production (IP) and integrated pest management (IPM). The overall goal is sustainability at the ecological, economic and social level to produce high quality grapes. In 1993, the IP-IPM head-organisation VITISWISS was created. The starting points were the improvement of pest management by the biocontrol of spider mites and the control of grape berry moths by mating disruption and an optimal soil management, followed over the years by state-of-the-art sprayer calibration, development of disease forecasting models (AgroMeteo, VitiMeteo), leaf-area adapted dosage of plant protection products, enhanced biodiversity, water and cover crop management. The efforts and the results gained in a continuous education process by the growers are considerable, but not enough for consumers and politics concerned by the use of plant protection products. The absence of acaricides and insecticides as well as forecasting systems available on the internet (www.agrometeo.ch) for the control of downy and powdery mildew, represent the major progresses. Where mechanisation is possible, herbicides can progressively be replaced by mechanical technics, which is not possible in steep vineyards. The general irrational unscientific trend against “synthetic” plant protection products requests alternatives for the control of fungal diseases and for cover crop management under the vine rows to avoid excessive water-nitrogen competition particularly in the actual context of climate change.

Introduction: Mycobacterium tuberculosis (Mtb), the causative agent of tuberculosis, remains a serious threat to human health worldwide and the quest for new anti-tubercular drugs is an enduring and demanding journey. Natural products (NPs) have played a significant role in advancing drug therapy of infectious diseases., Methods: This study evaluated the suitability of a high-throughput infection system composed of the host amoeba Dictyostelium discoideum (Dd) and Mycobacterium marinum (Mm), a close relative of Mtb, to identify anti-infective compounds. Growth of Dd and intracellular Mm were quantified by using luminescence and fluorescence readouts in phenotypic assays. The system was first benchmarked with a set of therapeutic anti-Mtb antibiotics and then used to screen a library of biotransformed stilbenes., Results: The study confirmed both efficacy of established antibiotics such as rifampicin and bedaquiline, with activities below defined anti-mycobacterium susceptibility breakpoints, and the lack of activity of pyrazinamide against Mm. The screening revealed the promising anti-infective activities of trans -δ-viniferins and in particular of two compounds 17 and 19 with an IC 50 of 18.1 μM, 9 μM, respectively. Both compounds had no activity on Mm in broth. Subsequent exploration via halogenation and structure-activity relationship studies led to the identification of derivatives with improved selectivity and potency. The modes of action of the anti-infective compounds may involve inhibition of mycobacterial virulence factors or boosting of host defense., Discussion: The study highlights the potential of biotransformation and NP-inspired derivatization approaches for drug discovery and underscores the utility of the Dd-Mm infection system in identifying novel anti-infective compounds., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Nitschke, Huber, Vossio, Moreau, Marcourt, Gindro, Queiroz, Soldati and Hanna.)

Insects' host preferences are regulated by multiple factors whose interactions are only partly understood. Here we make use of an in-depth, untargeted metabolomic approach combining molecular networking (MN) and supervised Analysis of variance Multiblock Orthogonal Partial Least Squares (AMOPLS) to untangle egg-laying preferences of Drosophila suzukii , an invasive, highly polyphagous and destructive fruit pest originating from Southeast Asia. Based on behavioural experiments in the laboratory as well as field observation, we selected eight genetically related Vitis vinifera cultivars (e.g., Ancellotta, Galotta, Gamaret, Gamay, Gamay précoce, Garanoir, Mara and Reichensteiner) exhibiting significant differences in their susceptibility toward D. suzukii . The two most and the two least attractive red cultivars were chosen for further metabolomic analyses of their grape skins. The combination of MN and statistical AMOPLS findings with semi-quantitative detection information enabled us to identify flavonoids as interesting markers for differences in the attractiveness of the four studied grape cultivars towards D. suzukii . Overall, dihydroflavonols were accumulated in unattractive grape cultivars, while attractive grape cultivars were richer in flavonols. Crucially, both dihydroflavonols and flavonols were abundant metabolites in the semi-quantitative analysis of the extracted molecules from the grape skin. We discuss how these two flavonoid classes might influence the egg-laying behaviour of D. suzukii females and how they could serve as potential markers for D. suzukii infestations in grapes that can be potentially extended to other fruits. We believe that our novel, integrated analytical approach could also be applied to the study of other biological relationships characterised by multiple evolving parameters., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Marcellin-Gros, Hévin, Chevalley, Boccard, Hofstetter, Gindro, Wolfender and Kehrli.)

Phenoxy radical coupling reactions are widely used in nature for the synthesis of complex molecules such as lignin. Their use in the laboratory has great potential for the production of high value compounds from the polyphenol family. While the enzymes responsible for the generation of the radicals are well known, the behavior of the latter is still enigmatic and difficult to control in a reaction flask. Previous work in our laboratory using the enzymatic secretome of B. cinerea containing laccases has shown that incubation of stilbenes leads to dimers, while incubation of phenylpropanoids leads to dimers as well as larger coupling products. Building on these previous studies, this paper investigates the role of different structural features in phenoxy radical couplings. We first demonstrate that the presence of an exocyclic conjugated double bond plays a role in the generation of efficient reactions. In addition, we show that the formation of phenylpropanoid trimers and tetramers can proceed via a decarboxylation reaction that regenerates this reactive moiety. Lastly, this study investigates the reactivity of other phenolic compounds: stilbene dimers, a dihydro-stilbene, a 4- O -methyl-stilbene and a simple phenol with the enzymatic secretome of B. cinerea . The observed efficient dimerization reactions consistently correlate with the presence of a para-phenol conjugated to an exocyclic double bond. The absence of this structural feature leads to variable results, with some compounds showing low conversion or no reaction at all. This research has allowed the development of a controlled method for the synthesis of specific dimers and tetramers of phenylpropanoid derivatives and novel stilbene derivatives, as well as an understanding of features that can promote efficient radical coupling reactions., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision., (Copyright © 2024 Huber, Marcourt, Félix, Tardy, Michellod, Scapozza, Wolfender, Gindro and Queiroz.)

microbeMASST, a taxonomically informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. Identification of microbe-derived metabolites and relative producers without a priori knowledge will vastly enhance the understanding of microorganisms' role in ecology and human health., (© 2024. The Author(s).)

Background: An endophytic fungal strain Penicillium crustosum was isolated from the seagrass Posidonia oceanica and investigated to identify its antimicrobial constituents and characterize its metabolome composition. The ethyl acetate extract of this fungus exhibited antimicrobial activity against methicillin-resistant Staphylococcus aureus (MRSA) as well as an anti-quorum sensing effect against Pseudomonas aeruginosa ., Methods: The crude extract was profiled by UHPLC-HRMS/MS, and the dereplication was assisted by feature-based molecular networking. As a result, more than twenty compounds were annotated in this fungus. To rapidly identify the active compounds, the enriched extract was fractionated by semipreparative HPLC-UV applying a chromatographic gradient transfer and dry load sample introduction to maximise resolution. The collected fractions were profiled by 1 H-NMR and UHPLC-HRMS., Results: The use of molecular networking-assisted UHPLC-HRMS/MS dereplication allowed preliminary identification of over 20 compounds present in the ethyl acetate extract of P. crustosum . The chromatographic approach significantly accelerated the isolation of the majority of compounds present in the active extract. The one-step fractionation allowed the isolation and identification of eight compounds (1-8)., Conclusion: This study led to the unambiguous identification of eight known secondary metabolites as well as the determination of their antibacterial properties., (Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.net.)

Introduction: In contrast to the dynamics observed in plant/pathogen interactions, endophytic fungi have the capacity to establish enduring associations within their hosts, leading to the development of a mutually beneficial relationship that relies on specialized chemical interactions. Research indicates that the presence of endophytic fungi has the ability to significantly modify the chemical makeup of the host organism. Our hypothesis proposes the existence of a reciprocal exchange of chemical signals between plants and fungi, facilitated by specialized chemical processes that could potentially manifest within the tissues of the host. This research aimed to precisely quantify the portion of the cumulative fungal endophytic community's metabolome detectable within host leaves, and tentatively evaluate its relevance to the host-endophyte interplay. The understory palm Astrocaryum sciophilum (Miq.) Pulle was used as a interesting host plant because of its notable resilience and prolonged life cycle, in a tropical ecosystem., Method: Using advanced metabolome characterization, including UHPLC-HRMS/MS and molecular networking, the study explored enriched metabolomes of both host leaves and 15 endophytic fungi. The intention was to capture a metabolomic "snapshot" of both host and endophytic community, to achieve a thorough and detailed analysis., Results and Discussion: This approach yielded an extended MS-based molecular network, integrating diverse metadata for identifying host- and endophyte-derived metabolites. The exploration of such data (>24000 features in positive ionization mode) enabled effective metabolome comparison, yielding insights into cultivable endophyte chemodiversity and occurrence of common metabolites between the holobiont and its fungal communities. Surprisingly, a minor subset of features overlapped between host leaf and fungal samples despite significant plant metabolome enrichment. This indicated that fungal metabolic signatures produced in vitro remain sparingly detectable in the leaf. Several classes of primary metabolites were possibly shared. Specific fungal metabolites and/or compounds of their chemical classes were only occasionally discernible in the leaf, highlighting endophytes partial contribution to the overall holobiont metabolome. To our knowledge, the metabolomic study of a plant host and its microbiome has rarely been performed in such a comprehensive manner. The general analytical strategy proposed in this paper seems well-adapted for any study in the field of microbial- or microbiome-related MS and can be applied to most host-microbe interactions., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Pellissier, Gaudry, Vilette, Lecoultre, Rutz, Allard, Marcourt, Ferreira Queiroz, Chave, Eparvier, Stien, Gindro and Wolfender.)