378 results on '"Giles, W. P."'
Search Results
2. Current Landscape of NTRK Inhibition for Pediatric CNS Tumors
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Moreira, Daniel C., Mikkelsen, Margit, and Robinson, Giles W.
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- 2024
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3. A computational signature of self-other mergence in Borderline Personality Disorder
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Giles W. Story, Sam Ereira, Stephanie Valle, Samuel R. Chamberlain, Jon E. Grant, and Raymond J. Dolan
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Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Abstract A tendency to merge mental representations of self and other is thought to underpin the intense and unstable relationships that feature in Borderline Personality Disorder (BPD). However, clinical theories of BPD do not specify, in computational terms, how the perspectives of self and other might become confused. To address this question, we used a probabilistic false belief task (p-FBT) to examine how individuals with BPD (N = 38) and matched controls from the general population (N = 74) selectively assigned beliefs to self or other. The p-FBT requires participants to track a gradually changing quantity, whilst also predicting another person’s belief about that quantity. We found that BPD participants showed less selectivity in belief assignment compared with controls (Cohen’s d = 0.64). Behaviourally, participants with BPD tended to predict that others’ beliefs resembled their own. Modelling analysis revealed that BPD participants were prone to generalise their own learning signals to others. Furthermore, this generalising tendency correlated with BPD symptomatology across participants, even when controlling for demographic factors and affective psychopathology. Our results support a computational account of self-other mergence, based on a generalisation of learning across agents. Self-other generalisation in learning purports to explain key clinical features of BPD, and suggests a potential transdiagnostic marker of mentalising capability.
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- 2024
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4. Concurrent ependymal and ganglionic differentiation in a subset of supratentorial neuroepithelial tumors with EWSR1-PLAGL1 rearrangement
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Julieann C. Lee, Selene C. Koo, Larissa V. Furtado, Alex Breuer, Mohammad K. Eldomery, Asim K. Bag, Pat Stow, Gary Rose, Trisha Larkin, Rick Sances, Bette K. Kleinschmidt-DeMasters, Jenna L. Bodmer, Nicholas Willard, Murat Gokden, Sonika Dahiya, Kaleigh Roberts, Kelsey C. Bertrand, Daniel C. Moreira, Giles W. Robinson, Jun Qin Mo, David W. Ellison, and Brent A. Orr
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PLAGL1 ,PLAGL2 ,EWSR1-PLAGL1 ,Ganglionic differentiation ,Ependymal-like ,Neuroepithelial tumor ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Neuroepithelial tumors with fusion of PLAGL1 or amplification of PLAGL1/PLAGL2 have recently been described often with ependymoma-like or embryonal histology respectively. To further evaluate emerging entities with PLAG-family genetic alterations, the histologic, molecular, clinical, and imaging features are described for 8 clinical cases encountered at St. Jude (EWSR1-PLAGL1 fusion n = 6; PLAGL1 amplification n = 1; PLAGL2 amplification n = 1). A histologic feature observed on initial resection in a subset (4/6) of supratentorial neuroepithelial tumors with EWSR1-PLAGL1 rearrangement was the presence of concurrent ependymal and ganglionic differentiation. This ranged from prominent clusters of ganglion cells within ependymoma/subependymoma-like areas, to interspersed ganglion cells of low to moderate frequency among otherwise ependymal-like histology, or focal areas with a ganglion cell component. When present, the combination of ependymal-like and ganglionic features within a supratentorial neuroepithelial tumor may raise consideration for an EWSR1-PLAGL1 fusion, and prompt initiation of appropriate molecular testing such as RNA sequencing and methylation profiling. One of the EWSR1-PLAGL1 fusion cases showed subclonal INI1 loss in a region containing small clusters of rhabdoid/embryonal cells, and developed a prominent ganglion cell component on recurrence. As such, EWSR1-PLAGL1 neuroepithelial tumors are a tumor type in which acquired inactivation of SMARCB1 and development of AT/RT features may occur and lead to clinical progression. In contrast, the PLAGL2 and PLAGL1 amplified cases showed either embryonal histology or contained an embryonal component with a significant degree of desmin staining, which could also serve to raise consideration for a PLAG entity when present. Continued compilation of associated clinical data and histopathologic findings will be critical for understanding emerging entities with PLAG-family genetic alterations.
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- 2024
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5. A computational signature of self-other mergence in Borderline Personality Disorder
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Story, Giles W., Ereira, Sam, Valle, Stephanie, Chamberlain, Samuel R., Grant, Jon E., and Dolan, Raymond J.
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- 2024
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6. Concurrent ependymal and ganglionic differentiation in a subset of supratentorial neuroepithelial tumors with EWSR1-PLAGL1 rearrangement
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Lee, Julieann C., Koo, Selene C., Furtado, Larissa V., Breuer, Alex, Eldomery, Mohammad K., Bag, Asim K., Stow, Pat, Rose, Gary, Larkin, Trisha, Sances, Rick, Kleinschmidt-DeMasters, Bette K., Bodmer, Jenna L., Willard, Nicholas, Gokden, Murat, Dahiya, Sonika, Roberts, Kaleigh, Bertrand, Kelsey C., Moreira, Daniel C., Robinson, Giles W., Mo, Jun Qin, Ellison, David W., and Orr, Brent A.
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- 2024
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7. The Value-Added Catalog of ASAS-SN Eclipsing Binaries III: Masses and Radii of Gaia Spectroscopic Binaries
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Rowan, D. M., Jayasinghe, T., Stanek, K. Z., Kochanek, C. S., Thompson, Todd A., Shappee, B. J., and Giles, W.
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Astrophysics - Solar and Stellar Astrophysics - Abstract
Masses and radii of stars can be derived by combining eclipsing binary light curves with spectroscopic orbits. In our previous work, we modeled the All-Sky Automated Survey for Supernovae (ASAS-SN) light curves of more than 30,000 detached eclipsing binaries using PHOEBE. Here we combine our results with 128 double-lined spectroscopic orbits from Gaia Data Release 3. We visually inspect ASAS-SN light curves of double-lined spectroscopic binaries on the lower main sequence and the giant branch, adding 11 binaries to our sample. We find that only 50% of systems have Gaia periods and eccentricities consistent with the ASAS-SN values. We use emcee and PHOEBE to determine masses and radii for a total of 122 stars with median fractional uncertainties of 7.9% and 6.3%, respectively., Comment: 11 pages, 9 figures. Submitted to MNRAS. Data available online at https://asas-sn.osu.edu/binaries
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- 2022
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8. The Value-Added Catalog of ASAS-SN Eclipsing Binaries II: Properties of Extra-Physics Systems
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Rowan, D. M., Jayasinghe, T., Stanek, K. Z., Kochanek, C. S., Thompson, Todd A., Shappee, B. J., Holoien, T. W. -S., Prieto, J. L., and Giles, W.
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Astrophysics - Solar and Stellar Astrophysics - Abstract
Detached eclipsing binaries are the primary tool used to measure precise masses and radii of stars. In our previous paper estimating the parameters of more than 30,000 detached eclipsing binaries, we identified 766 eclipsing binaries with additional features in their All-Sky Automated Survey for Supernovae (ASAS-SN) and Transiting Exoplanet Survey Satellite (TESS) light curves. Here, we characterize these "extra-physics" systems, identifying eclipsing binaries with spotted stars, pulsating components, and candidate triple/quadruple systems. We use the Gaia, ATLAS, ZTF, and ASAS-SN variable star catalogs to consider possible blends. We use MIST isochrones and evolutionary tracks to identify systems with main sequence, subgiant, and giant primaries and highlight systems in sparsely populated regions of the color-magnitude diagram. We find that the orbital period distribution of spotted binaries is divided by evolutionary state and find 68 with X-ray detections. For the candidate triple/quadruples and pulsating systems, we calculate the extra orbital/pulsational period and identify systems with resonances. Finally, we highlight a number of exotic systems, including eclipsing CVs, subdwarfs, and binaries with disks., Comment: 19 pages, 14 figures. Submitted to MNRAS
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- 2022
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9. The Value-Added Catalog of ASAS-SN Eclipsing Binaries: Parameters of Thirty Thousand Detached Systems
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Rowan, D. M., Jayasinghe, T., Stanek, K. Z., Kochanek, C. S., Thompson, Todd A., Shappee, B. J., Holoien, T. W. -S., Prieto, J. L., and Giles, W.
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Astrophysics - Solar and Stellar Astrophysics - Abstract
Detached eclipsing binaries are a fundamental tool for measuring the physical parameters of stars that are effectively evolving in isolation. Starting from more than 40,000 eclipsing binary candidates identified by the All-Sky Automated Survey for Supernovae (ASAS-SN), we use PHOEBE to determine the sum of the fractional radii, the ratio of effective temperatures, the inclinations, and the eccentricities for 35,464 systems. We visually inspect all the light curve models to verify the model fits and examine the TESS light curves, when available, to select systems with evidence for additional physics, such as spots, mass transfer, and hierarchical triples. We examine the distributions of the eclipsing binary model parameters and the orbital parameters. We identify two groups in the sum of the fractional radii and effective temperature ratio parameter space that may distinguish systems approaching the semidetached limit. Combining Gaia EDR3 with extinction estimates from 3-dimensional dust maps, we examine the properties of the systems as a function of their absolute magnitude and evolutionary state. Finally, we present light curves of selected eclipsing binaries that may be of interest for follow-up studies., Comment: 24 pages, 26 figures. Submitted to MNRAS
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- 2022
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10. The ASAS-SN Catalog of Variable Stars X: Discovery of 116,000 New Variable Stars Using g-band Photometry
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Christy, C. T., Jayasinghe, T., Stanek, K. Z., Kochanek, C. S., Thompson, T. A., Shappee, B. J., Holoien, T. W. -S., Prieto, J. L., Dong, Subo, and Giles, W.
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Astrophysics - Solar and Stellar Astrophysics ,Astrophysics - Astrophysics of Galaxies - Abstract
The All-Sky Automated Survey for Supernovae (ASAS-SN) is the first optical survey to monitor the entire sky, currently with a cadence of $\lesssim 24$ hours down to $g \lesssim 18.5$ mag. ASAS-SN has routinely operated since 2013, collecting $\sim$ 2,000 to over 7,500 epochs of $V$ and $g-$band observations per field to date. This work illustrates the first analysis of ASAS-SN's newer, deeper, higher cadence $g-$band data. From an input source list of ${\sim}55$ million isolated sources with $g<18$~mag, we identified $1.5\times10^6$ variable star candidates using a random forest classifier trained on features derived from $\textit{Gaia}$, 2MASS, and AllWISE. Using ASAS-SN $g-$band light curves, and an updated random forest classifier augmented with data from Citizen ASAS-SN, we classified the candidate variables into 8 broad variability types. We present a catalog of ${\sim}116,000$ new variable stars with high classification probabilities, including ${\sim}111,000$ periodic variables and ${\sim}5,000$ irregular variables. We also recovered ${\sim}263,000$ known variable stars., Comment: 18 pages, 21 figures, 1 table. Submitted to MNRAS. The g-band catalog of variables and their light curves are available here: https://drive.google.com/drive/folders/1gxcIokRsw1eyPmbPZ0-C8blfRGItSOAu
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- 2022
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11. A sellar presentation of a WNT-activated embryonal tumor: further evidence of an ectopic medulloblastoma
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Tauziède-Espariat, Arnault, Simbozel, Marie, Liu, Anthony P. Y., Robinson, Giles W., Masliah-Planchon, Julien, Sievers, Philipp, Vasiljevic, Alexandre, Duchesne, Mathilde, Puget, Stéphanie, Dangouloff-Ros, Volodia, Boddaert, Nathalie, Métais, Alice, Hasty, Lauren, Dufour, Christelle, and Varlet, Pascale
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- 2023
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12. DNA-methylation subgroups carry no prognostic significance in ATRT-SHH patients in clinical trial cohorts
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Tran, Quynh T., Upadhyaya, Santhosh A., Billups, Catherine A., Onar-Thomas, Arzu, Alom, Md. Zahangir, Carey, Steven S., Robinson, Giles W., Ellison, David W., Gajjar, Amar, and Orr, Brent A.
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- 2023
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13. Charge transport modelling of lithium ion batteries
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Richardson, Giles W, Foster, Jamie M, Ranom, Rahifa, Please, Colin P, and Ramos, Angel M
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Physics - Chemical Physics ,Physics - Applied Physics ,35B27, 35Q99, 35M33 - Abstract
This paper presents the current state of mathematical modelling of the electrochemical behaviour of lithium-ion batteries as they are charged and discharged. It reviews the models developed by Newman and co-workers, both in the cases of dilute and moderately-concentrated electrolytes and indicates the modelling assumptions required for their development. Particular attention is paid to the interface conditions imposed between the electrolyte and the active electrode material; necessary conditions are derived for one of these, the Butler-Volmer relation, in order to ensure physically realistic solutions. Insight into the origin of the differences between various models found in the literature is revealed by considering formulations obtained by using different measures of the electric potential. Materials commonly used for electrodes in lithium ion batteries are considered and the various mathematical models used to describe lithium transport in them discussed. The problem of up-scaling from models of behaviour at the single electrode particle scale to the cell scale is addressed using homogenisation techniques resulting in the pseudo 2D model commonly used to describe charge transport and discharge behaviour in lithium-ion cells. Numerical solution to this model is discussed and illustrative results for a common device are computed.
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- 2020
14. A sellar presentation of a WNT-activated embryonal tumor: further evidence of an ectopic medulloblastoma
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Arnault Tauziède-Espariat, Marie Simbozel, Anthony P. Y. Liu, Giles W. Robinson, Julien Masliah-Planchon, Philipp Sievers, Alexandre Vasiljevic, Mathilde Duchesne, Stéphanie Puget, Volodia Dangouloff-Ros, Nathalie Boddaert, Alice Métais, Lauren Hasty, Christelle Dufour, and Pascale Varlet
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Neurology. Diseases of the nervous system ,RC346-429 - Published
- 2023
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15. Risk-adapted therapy and biological heterogeneity in pineoblastoma: integrated clinico-pathological analysis from the prospective, multi-center SJMB03 and SJYC07 trials
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Liu, Anthony PY, Gudenas, Brian, Lin, Tong, Orr, Brent A, Klimo, Paul, Kumar, Rahul, Bouffet, Eric, Gururangan, Sridharan, Crawford, John R, Kellie, Stewart J, Chintagumpala, Murali, Fisher, Michael J, Bowers, Daniel C, Hassall, Tim, Indelicato, Daniel J, Onar-Thomas, Arzu, Ellison, David W, Boop, Frederick A, Merchant, Thomas E, Robinson, Giles W, Northcott, Paul A, and Gajjar, Amar
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Biomedical and Clinical Sciences ,Clinical Sciences ,Oncology and Carcinogenesis ,Pediatric Cancer ,Genetics ,Clinical Trials and Supportive Activities ,Biotechnology ,Pediatric ,Clinical Research ,Prevention ,Cancer ,Adolescent ,Age Factors ,Brain Neoplasms ,Child ,Child ,Preschool ,Cohort Studies ,DNA Methylation ,Female ,Humans ,Male ,Pineal Gland ,Pinealoma ,Proto-Oncogene Mas ,Risk Factors ,Survival Rate ,Young Adult ,Pineoblastoma ,Clinical trial ,Molecular subgroups ,DICER1 ,MicroRNA processing ,FOXR2 ,Neurosciences ,Neurology & Neurosurgery - Abstract
Pineoblastoma is a rare embryonal tumor of childhood that is conventionally treated with high-dose craniospinal irradiation (CSI). Multi-dimensional molecular evaluation of pineoblastoma and associated intertumoral heterogeneity is lacking. Herein, we report outcomes and molecular features of children with pineoblastoma from two multi-center, risk-adapted trials (SJMB03 for patients ≥ 3 years; SJYC07 for patients
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- 2020
16. Proceedings of the Comprehensive Oncology Network Evaluating Rare CNS Tumors (NCI-CONNECT) Adult Medulloblastoma Workshop.
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Penas-Prado, Marta, Theeler, Brett J, Cordeiro, Brittany, Dunkel, Ira J, Hau, Peter, Mahajan, Anita, Robinson, Giles W, Willmarth, Nicole, Aboud, Orwa, Aldape, Kenneth, Butman, John A, Gajjar, Amar, Kelly, William, Rao, Ganesh, Raygada, Margarita, Siegel, Christine, Romo, Carlos G, Armstrong, Terri S, Gilbert, Mark R, and NCI-CONNECT Adult Medulloblastoma Workshop
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NCI-CONNECT Adult Medulloblastoma Workshop ,NCI-CONNECT ,adult medulloblastoma ,clinical trials ,rare CNS tumors ,workshop ,Brain Disorders ,Cancer ,Neurosciences ,Brain Cancer ,Rare Diseases ,Clinical Research ,Pediatric Cancer ,Pediatric ,Good Health and Well Being - Abstract
BackgroundMedulloblastoma (MB) is a rare brain tumor occurring more frequently in children in whom research has been primarily focused. Treatment recommendations in adults are mainly based on retrospective data and pediatric experience; however, molecular features and treatment tolerance differ between the 2 age groups. In adults, prognostic tools are suboptimal, late recurrences are typical, and long-term sequelae remain understudied. Treatment has not adapted to molecular classification advances; thus, the survival rate of adult MB has not improved.MethodsIn 2017, the National Cancer Institute (NCI) received support from the Cancer Moonshot℠ to address the challenges and unmet needs of adults with rare central nervous system tumors through NCI-CONNECT, a program that creates partnerships among patients, health care professionals, researchers, and advocacy organizations. On November 25, 2019, NCI-CONNECT convened leading clinicians and scientists in a workshop to review advances in research, share scientific insights, and discuss clinical challenges in adult MB.ResultsWorking groups identified unmet needs in clinical trial design, tissue acquisition and testing, tumor modeling, and measurement of clinical outcomes.ConclusionsParticipants identified opportunities for collaboration; discussed plans to create a working group of clinicians, researchers, and patient advocates; and developed specific action items to expedite progress in adult MB.
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- 2020
17. Molecular classification and outcome of children with rare CNS embryonal tumors: results from St. Jude Children’s Research Hospital including the multi-center SJYC07 and SJMB03 clinical trials
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Liu, Anthony P. Y., Dhanda, Sandeep K., Lin, Tong, Sioson, Edgar, Vasilyeva, Aksana, Gudenas, Brian, Tatevossian, Ruth G., Jia, Sujuan, Neale, Geoffrey, Bowers, Daniel C., Hassall, Tim, Partap, Sonia, Crawford, John R., Chintagumpala, Murali, Bouffet, Eric, McCowage, Geoff, Broniscer, Alberto, Qaddoumi, Ibrahim, Armstrong, Greg, Wright, Karen D., Upadhyaya, Santhosh A., Vinitsky, Anna, Tinkle, Christopher L., Lucas, John, Chiang, Jason, Indelicato, Daniel J., Sanders, Robert, Klimo, Jr., Paul, Boop, Frederick A., Merchant, Thomas E., Ellison, David W., Northcott, Paul A., Orr, Brent A., Zhou, Xin, Onar-Thomas, Arzu, Gajjar, Amar, and Robinson, Giles W.
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- 2022
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18. Unified rhombic lip origins of group 3 and group 4 medulloblastoma
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Smith, Kyle S., Bihannic, Laure, Gudenas, Brian L., Haldipur, Parthiv, Tao, Ran, Gao, Qingsong, Li, Yiran, Aldinger, Kimberly A., Iskusnykh, Igor Y., Chizhikov, Victor V., Scoggins, Matthew, Zhang, Silu, Edwards, Angela, Deng, Mei, Glass, Ian A., Overman, Lynne M., Millman, Jake, Sjoboen, Alexandria H., Hadley, Jennifer, Golser, Joseph, Mankad, Kshitij, Sheppard, Heather, Onar-Thomas, Arzu, Gajjar, Amar, Robinson, Giles W., Hovestadt, Volker, Orr, Brent A., Patay, Zoltán, Millen, Kathleen J., and Northcott, Paul A.
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- 2022
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19. Facial injury patterns in victims of intimate partner violence
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Gujrathi, Rahul, Tang, Anji, Thomas, Richard, Park, Hyesun, Gosangi, Babina, Stoklosa, Hanni M., Lewis-O’Connor, Annie, Seltzer, Steven E., Boland, Giles W., Rexrode, Kathryn M., Orgill, Dennis P., and Khurana, Bharti
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- 2022
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20. Molecular Grouping and Outcomes of Young Children with Newly Diagnosed Ependymoma Treated on the Multi-Institutional SJYC07 Trial
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Upadhyaya, Santhosh A, Robinson, Giles W, Onar-Thomas, Arzu, Orr, Brent A, Billups, Catherine A, Bowers, Daniel C, Bendel, Anne E, Hassall, Tim, Crawford, John R, Partap, Sonia, Fisher, Paul G, Tatevossian, Ruth G, Seah, Tiffany, Qaddoumi, Ibrahim A, Vinitsky, Anna, Armstrong, Gregory T, Sabin, Noah D, Tinkle, Christopher L, Klimo, Paul, Indelicato, Danny J, Boop, Frederick A, Merchant, Thomas E, Ellison, David W, and Gajjar, Amar
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Cancer ,Brain Cancer ,Rare Diseases ,Pediatric ,Brain Disorders ,Clinical Research ,Evaluation of treatments and therapeutic interventions ,6.1 Pharmaceuticals ,Antineoplastic Combined Chemotherapy Protocols ,Brain Neoplasms ,Chemoradiotherapy ,Chemotherapy ,Adjuvant ,Child ,Preschool ,Ependymoma ,Female ,Humans ,Infant ,Infant ,Newborn ,Male ,Neurosurgical Procedures ,Progression-Free Survival ,Radiotherapy ,Adjuvant ,Treatment Outcome ,1q gain ,chemotherapy ,clinical target volume ,ependymoma groups ,Neurosciences ,Oncology and Carcinogenesis ,Oncology & Carcinogenesis - Abstract
BackgroundThis report documents the clinical characteristics, molecular grouping, and outcome of young children with ependymoma treated prospectively on a clinical trial.MethodsFifty-four children (aged ≤3 y) with newly diagnosed ependymoma were treated on the St Jude Young Children 07 (SJYC07) trial with maximal safe surgical resection, 4 cycles of systemic chemotherapy, consolidation therapy using focal conformal radiation therapy (RT) (5-mm clinical target volume), and 6 months of oral maintenance chemotherapy. Molecular groups were determined by tumor DNA methylation using Infinium Methylation EPIC BeadChip and profiled on the German Cancer Research Center/Molecular Neuropathology 2.0 classifier.ResultsOne of the 54 study patients had metastases (cerebrospinal fluid positive) at diagnosis. Gross or near-total resection was achieved in 48 (89%) patients prior to RT. At a median follow-up of 4.4 years (range, 0.2-10.3 y), 4-year progression-free survival (PFS) was 75.1% ± 7.2%, and overall survival was 92.6% ± 4.4%. The molecular groups showed no significant difference in PFS (4-year estimates: posterior fossa ependymoma group A [PF-EPN-A; 42/54], 71.2% ± 8.3%; supratentorial ependymoma positive for v-rel avian reticuloendotheliosis viral oncogene homolog A [ST-EPN-RELA; 8/54], 83.3% ± 17.0%; and supratentorial ependymoma positive for Yes-associated protein [4/54], 100%, P = 0.22). Subtotal resection prior to RT was associated with an inferior PFS compared with gross or near-total resection (4-year PFS: 41.7% ± 22.5% vs 79.0% ± 7.1%, P = 0.024), as was PF-EPN-A group with 1q gain (P = 0.05). Histopathologic grading was not associated with outcomes (classic vs anaplastic; P = 0.89).ConclusionsIn this prospectively treated cohort of young children with ependymoma, ST-EPN-RELA tumors had a more favorable outcome than reported from retrospective data. Histologic grade did not impact outcome. PF-EPN-A with 1q gain and subtotal resection were associated with inferior outcomes.
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- 2019
21. The posterior fossa syndrome questionnaire: using science to inform practice
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Wickenhauser, Molly E., Khan, Raja B., Raches, Darcy, Ashford, Jason M., Russell, Kathryn M. W., Lyons, Kristin, Robinson, Giles W., Gajjar, Amar, Klimo, Jr, Paul, and Conklin, Heather M.
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- 2022
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22. Adoption of a diagnostic certainty scale in abdominal imaging: 2-year experience at an academic institution
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Glazer, Daniel I., Budiawan, Elvira, Burk, Kristine S., Shinagare, Atul B., Lacson, Ronilda, Boland, Giles W., and Khorasani, Ramin
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- 2022
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23. Circulating tumor DNA profiling for childhood brain tumors: Technical challenges and evidence for utility
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Liu, Anthony Pak-Yin, Northcott, Paul A., Robinson, Giles W., and Gajjar, Amar
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- 2022
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24. Upper extremity fractures due to intimate partner violence versus accidental causes
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Khurana, Bharti, Raja, Ali, Dyer, George S. M., Seltzer, Steven E., Boland, Giles W., Harris, Mitchel B., Tornetta, Paul, and Loder, Randall T.
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- 2022
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25. Successful replantation of self-amputated penis using microvascular repair resulting in restoration of voiding and erectile function
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Kyle S. Garcia, Giles W. Becker, and Matthew B. Gretzer
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Penile amputation ,Reconstructive urology ,Trauma ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Intentional self-amputation of the penis is rarely encountered and usually occurs in the context of an underlying psychiatric illness. We report the case of a 42-year-old male who intentionally amputated his penis, both testicles, and a large portion of the scrotum en bloc using garden shears. Microscopic and macroscopic replantation of the penis was undertaken, resulting in restoration of normal urinary function and moderate erectile function.
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- 2023
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26. Spectrum and prevalence of genetic predisposition in medulloblastoma: a retrospective genetic study and prospective validation in a clinical trial cohort.
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Waszak, Sebastian M, Northcott, Paul A, Buchhalter, Ivo, Robinson, Giles W, Sutter, Christian, Groebner, Susanne, Grund, Kerstin B, Brugières, Laurence, Jones, David TW, Pajtler, Kristian W, Morrissy, A Sorana, Kool, Marcel, Sturm, Dominik, Chavez, Lukas, Ernst, Aurelie, Brabetz, Sebastian, Hain, Michael, Zichner, Thomas, Segura-Wang, Maia, Weischenfeldt, Joachim, Rausch, Tobias, Mardin, Balca R, Zhou, Xin, Baciu, Cristina, Lawerenz, Christian, Chan, Jennifer A, Varlet, Pascale, Guerrini-Rousseau, Lea, Fults, Daniel W, Grajkowska, Wiesława, Hauser, Peter, Jabado, Nada, Ra, Young-Shin, Zitterbart, Karel, Shringarpure, Suyash S, De La Vega, Francisco M, Bustamante, Carlos D, Ng, Ho-Keung, Perry, Arie, MacDonald, Tobey J, Hernáiz Driever, Pablo, Bendel, Anne E, Bowers, Daniel C, McCowage, Geoffrey, Chintagumpala, Murali M, Cohn, Richard, Hassall, Timothy, Fleischhack, Gudrun, Eggen, Tone, Wesenberg, Finn, Feychting, Maria, Lannering, Birgitta, Schüz, Joachim, Johansen, Christoffer, Andersen, Tina V, Röösli, Martin, Kuehni, Claudia E, Grotzer, Michael, Kjaerheim, Kristina, Monoranu, Camelia M, Archer, Tenley C, Duke, Elizabeth, Pomeroy, Scott L, Shelagh, Redmond, Frank, Stephan, Sumerauer, David, Scheurlen, Wolfram, Ryzhova, Marina V, Milde, Till, Kratz, Christian P, Samuel, David, Zhang, Jinghui, Solomon, David A, Marra, Marco, Eils, Roland, Bartram, Claus R, von Hoff, Katja, Rutkowski, Stefan, Ramaswamy, Vijay, Gilbertson, Richard J, Korshunov, Andrey, Taylor, Michael D, Lichter, Peter, Malkin, David, Gajjar, Amar, Korbel, Jan O, and Pfister, Stefan M
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Humans ,Medulloblastoma ,Cerebellar Neoplasms ,Genetic Predisposition to Disease ,Risk Factors ,Retrospective Studies ,Prospective Studies ,Reproducibility of Results ,Predictive Value of Tests ,Gene Expression Profiling ,Pedigree ,DNA Mutational Analysis ,DNA Methylation ,Heredity ,Phenotype ,Germ-Line Mutation ,Models ,Genetic ,Adolescent ,Adult ,Child ,Child ,Preschool ,Infant ,Female ,Male ,Young Adult ,Genetic Testing ,Transcriptome ,Biomarkers ,Tumor ,Progression-Free Survival ,Exome Sequencing ,Brain Cancer ,Genetics ,Cancer ,Human Genome ,Pediatric ,Pediatric Cancer ,Rare Diseases ,Brain Disorders ,Aetiology ,2.1 Biological and endogenous factors ,Oncology and Carcinogenesis ,Oncology & Carcinogenesis - Abstract
BackgroundMedulloblastoma is associated with rare hereditary cancer predisposition syndromes; however, consensus medulloblastoma predisposition genes have not been defined and screening guidelines for genetic counselling and testing for paediatric patients are not available. We aimed to assess and define these genes to provide evidence for future screening guidelines.MethodsIn this international, multicentre study, we analysed patients with medulloblastoma from retrospective cohorts (International Cancer Genome Consortium [ICGC] PedBrain, Medulloblastoma Advanced Genomics International Consortium [MAGIC], and the CEFALO series) and from prospective cohorts from four clinical studies (SJMB03, SJMB12, SJYC07, and I-HIT-MED). Whole-genome sequences and exome sequences from blood and tumour samples were analysed for rare damaging germline mutations in cancer predisposition genes. DNA methylation profiling was done to determine consensus molecular subgroups: WNT (MBWNT), SHH (MBSHH), group 3 (MBGroup3), and group 4 (MBGroup4). Medulloblastoma predisposition genes were predicted on the basis of rare variant burden tests against controls without a cancer diagnosis from the Exome Aggregation Consortium (ExAC). Previously defined somatic mutational signatures were used to further classify medulloblastoma genomes into two groups, a clock-like group (signatures 1 and 5) and a homologous recombination repair deficiency-like group (signatures 3 and 8), and chromothripsis was investigated using previously established criteria. Progression-free survival and overall survival were modelled for patients with a genetic predisposition to medulloblastoma.FindingsWe included a total of 1022 patients with medulloblastoma from the retrospective cohorts (n=673) and the four prospective studies (n=349), from whom blood samples (n=1022) and tumour samples (n=800) were analysed for germline mutations in 110 cancer predisposition genes. In our rare variant burden analysis, we compared these against 53 105 sequenced controls from ExAC and identified APC, BRCA2, PALB2, PTCH1, SUFU, and TP53 as consensus medulloblastoma predisposition genes according to our rare variant burden analysis and estimated that germline mutations accounted for 6% of medulloblastoma diagnoses in the retrospective cohort. The prevalence of genetic predispositions differed between molecular subgroups in the retrospective cohort and was highest for patients in the MBSHH subgroup (20% in the retrospective cohort). These estimates were replicated in the prospective clinical cohort (germline mutations accounted for 5% of medulloblastoma diagnoses, with the highest prevalence [14%] in the MBSHH subgroup). Patients with germline APC mutations developed MBWNT and accounted for most (five [71%] of seven) cases of MBWNT that had no somatic CTNNB1 exon 3 mutations. Patients with germline mutations in SUFU and PTCH1 mostly developed infant MBSHH. Germline TP53 mutations presented only in childhood patients in the MBSHH subgroup and explained more than half (eight [57%] of 14) of all chromothripsis events in this subgroup. Germline mutations in PALB2 and BRCA2 were observed across the MBSHH, MBGroup3, and MBGroup4 molecular subgroups and were associated with mutational signatures typical of homologous recombination repair deficiency. In patients with a genetic predisposition to medulloblastoma, 5-year progression-free survival was 52% (95% CI 40-69) and 5-year overall survival was 65% (95% CI 52-81); these survival estimates differed significantly across patients with germline mutations in different medulloblastoma predisposition genes.InterpretationGenetic counselling and testing should be used as a standard-of-care procedure in patients with MBWNT and MBSHH because these patients have the highest prevalence of damaging germline mutations in known cancer predisposition genes. We propose criteria for routine genetic screening for patients with medulloblastoma based on clinical and molecular tumour characteristics.FundingGerman Cancer Aid; German Federal Ministry of Education and Research; German Childhood Cancer Foundation (Deutsche Kinderkrebsstiftung); European Research Council; National Institutes of Health; Canadian Institutes for Health Research; German Cancer Research Center; St Jude Comprehensive Cancer Center; American Lebanese Syrian Associated Charities; Swiss National Science Foundation; European Molecular Biology Organization; Cancer Research UK; Hertie Foundation; Alexander and Margaret Stewart Trust; V Foundation for Cancer Research; Sontag Foundation; Musicians Against Childhood Cancer; BC Cancer Foundation; Swedish Council for Health, Working Life and Welfare; Swedish Research Council; Swedish Cancer Society; the Swedish Radiation Protection Authority; Danish Strategic Research Council; Swiss Federal Office of Public Health; Swiss Research Foundation on Mobile Communication; Masaryk University; Ministry of Health of the Czech Republic; Research Council of Norway; Genome Canada; Genome BC; Terry Fox Research Institute; Ontario Institute for Cancer Research; Pediatric Oncology Group of Ontario; The Family of Kathleen Lorette and the Clark H Smith Brain Tumour Centre; Montreal Children's Hospital Foundation; The Hospital for Sick Children: Sonia and Arthur Labatt Brain Tumour Research Centre, Chief of Research Fund, Cancer Genetics Program, Garron Family Cancer Centre, MDT's Garron Family Endowment; BC Childhood Cancer Parents Association; Cure Search Foundation; Pediatric Brain Tumor Foundation; Brainchild; and the Government of Ontario.
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- 2018
27. Patient-derived models recapitulate heterogeneity of molecular signatures and drug response in pediatric high-grade glioma
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Chen He, Ke Xu, Xiaoyan Zhu, Paige S. Dunphy, Brian Gudenas, Wenwei Lin, Nathaniel Twarog, Laura D. Hover, Chang-Hyuk Kwon, Lawryn H. Kasper, Junyuan Zhang, Xiaoyu Li, James Dalton, Barbara Jonchere, Kimberly S. Mercer, Duane G. Currier, William Caufield, Yingzhe Wang, Jia Xie, Alberto Broniscer, Cynthia Wetmore, Santhosh A. Upadhyaya, Ibrahim Qaddoumi, Paul Klimo, Frederick Boop, Amar Gajjar, Jinghui Zhang, Brent A. Orr, Giles W. Robinson, Michelle Monje, Burgess B. Freeman III, Martine F. Roussel, Paul A. Northcott, Taosheng Chen, Zoran Rankovic, Gang Wu, Jason Chiang, Christopher L. Tinkle, Anang A. Shelat, and Suzanne J. Baker
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Science - Abstract
Patient-derived xenografts provide a resource for basic and translational cancer research. Here, the authors generate multiple pediatric high-grade glioma xenografts, use omics technologies to show that they are representative of primary tumours and use them to assess therapeutic response.
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- 2021
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28. The whole-genome landscape of medulloblastoma subtypes
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Northcott, Paul A, Buchhalter, Ivo, Morrissy, A Sorana, Hovestadt, Volker, Weischenfeldt, Joachim, Ehrenberger, Tobias, Gröbner, Susanne, Segura-Wang, Maia, Zichner, Thomas, Rudneva, Vasilisa A, Warnatz, Hans-Jörg, Sidiropoulos, Nikos, Phillips, Aaron H, Schumacher, Steven, Kleinheinz, Kortine, Waszak, Sebastian M, Erkek, Serap, Jones, David TW, Worst, Barbara C, Kool, Marcel, Zapatka, Marc, Jäger, Natalie, Chavez, Lukas, Hutter, Barbara, Bieg, Matthias, Paramasivam, Nagarajan, Heinold, Michael, Gu, Zuguang, Ishaque, Naveed, Jäger-Schmidt, Christina, Imbusch, Charles D, Jugold, Alke, Hübschmann, Daniel, Risch, Thomas, Amstislavskiy, Vyacheslav, Gonzalez, Francisco German Rodriguez, Weber, Ursula D, Wolf, Stephan, Robinson, Giles W, Zhou, Xin, Wu, Gang, Finkelstein, David, Liu, Yanling, Cavalli, Florence MG, Luu, Betty, Ramaswamy, Vijay, Wu, Xiaochong, Koster, Jan, Ryzhova, Marina, Cho, Yoon-Jae, Pomeroy, Scott L, Herold-Mende, Christel, Schuhmann, Martin, Ebinger, Martin, Liau, Linda M, Mora, Jaume, McLendon, Roger E, Jabado, Nada, Kumabe, Toshihiro, Chuah, Eric, Ma, Yussanne, Moore, Richard A, Mungall, Andrew J, Mungall, Karen L, Thiessen, Nina, Tse, Kane, Wong, Tina, Jones, Steven JM, Witt, Olaf, Milde, Till, Von Deimling, Andreas, Capper, David, Korshunov, Andrey, Yaspo, Marie-Laure, Kriwacki, Richard, Gajjar, Amar, Zhang, Jinghui, Beroukhim, Rameen, Fraenkel, Ernest, Korbel, Jan O, Brors, Benedikt, Schlesner, Matthias, Eils, Roland, Marra, Marco A, Pfister, Stefan M, Taylor, Michael D, and Lichter, Peter
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Cancer ,Human Genome ,Brain Disorders ,Pediatric Cancer ,Brain Cancer ,Genetics ,Biotechnology ,Rare Diseases ,Neurosciences ,Pediatric ,Aetiology ,2.1 Biological and endogenous factors ,Development of treatments and therapeutic interventions ,5.1 Pharmaceuticals ,Good Health and Well Being ,Carcinogenesis ,Carrier Proteins ,Cohort Studies ,DNA Methylation ,DNA Mutational Analysis ,Datasets as Topic ,Epistasis ,Genetic ,Genome ,Human ,Genomics ,Humans ,Medulloblastoma ,Molecular Targeted Therapy ,Muscle Proteins ,Mutation ,Oncogenes ,Transcription Factors ,Whole Genome Sequencing ,Wnt Proteins ,General Science & Technology - Abstract
Current therapies for medulloblastoma, a highly malignant childhood brain tumour, impose debilitating effects on the developing child, and highlight the need for molecularly targeted treatments with reduced toxicity. Previous studies have been unable to identify the full spectrum of driver genes and molecular processes that operate in medulloblastoma subgroups. Here we analyse the somatic landscape across 491 sequenced medulloblastoma samples and the molecular heterogeneity among 1,256 epigenetically analysed cases, and identify subgroup-specific driver alterations that include previously undiscovered actionable targets. Driver mutations were confidently assigned to most patients belonging to Group 3 and Group 4 medulloblastoma subgroups, greatly enhancing previous knowledge. New molecular subtypes were differentially enriched for specific driver events, including hotspot in-frame insertions that target KBTBD4 and 'enhancer hijacking' events that activate PRDM6. Thus, the application of integrative genomics to an extensive cohort of clinical samples derived from a single childhood cancer entity revealed a series of cancer genes and biologically relevant subtype diversity that represent attractive therapeutic targets for the treatment of patients with medulloblastoma.
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- 2017
29. Upper extremity injuries in the victims of intimate partner violence
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Thomas, Richard, Dyer, George S. M., Tornetta III, Paul, Park, Hyesun, Gujrathi, Rahul, Gosangi, Babina, Lebovic, Jordan, Hassan, Najmo, Seltzer, Steven E., Rexrode, Kathryn M., Boland, Giles W., Harris, Mitchel B., and Khurana, Bharti
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- 2021
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30. Low-coverage whole-genome sequencing of cerebrospinal-fluid-derived cell-free DNA in brain tumor patients
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Anthony P.Y. Liu, Kyle S. Smith, Rahul Kumar, Giles W. Robinson, and Paul A. Northcott
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Bioinformatics ,Sequence analysis ,Cancer ,Health Sciences ,Clinical Protocol ,Genomics ,Science (General) ,Q1-390 - Abstract
Summary: This protocol summarizes the pipeline for analysis of tumor-derived cell-free DNA (cfDNA) from cerebrospinal fluid (CSF) using low-coverage whole-genome sequencing (lcWGS). This approach enables resolution of chromosomal and focal copy-number variations (CNVs) as oncologic signatures, particularly for patients with central nervous system tumors. Our strategy tolerates sub-nanogram cfDNA input and is thus optimized for CSF samples where cfDNA yields are typically low. Overall, the detection of tumor-specific signatures in CSF-derived cfDNA is a promising biomarker for personalization of brain-tumor therapy.For complete details on the use and execution of this protocol, please refer to Liu et al. (2021).
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- 2022
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31. Clinical and molecular heterogeneity of pineal parenchymal tumors: a consensus study
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Liu, Anthony P. Y., Li, Bryan K., Pfaff, Elke, Gudenas, Brian, Vasiljevic, Alexandre, Orr, Brent A., Dufour, Christelle, Snuderl, Matija, Karajannis, Matthias A., Rosenblum, Marc K., Hwang, Eugene I., Ng, Ho-Keung, Hansford, Jordan R., Szathmari, Alexandru, Faure-Conter, Cécile, Merchant, Thomas E., Levine, Max, Bouvier, Nancy, von Hoff, Katja, Mynarek, Martin, Rutkowski, Stefan, Sahm, Felix, Kool, Marcel, Hawkins, Cynthia, Onar-Thomas, Arzu, Robinson, Giles W., Gajjar, Amar, Pfister, Stefan M., Bouffet, Eric, Northcott, Paul A., Jones, David T. W., and Huang, Annie
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- 2021
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32. Improving the completeness of structured MRI reports for rectal cancer staging
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Zhao, Anna H., Matalon, Shanna A., Shinagare, Atul B., Lee, Leslie K., Boland, Giles W., and Khorasani, Ramin
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- 2021
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33. EDucated: The emergency medicine pharmacotherapy literature of 2023.
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Koehl, Jennifer, Brown, Caitlin S., Faine, Brett, Rech, Megan A., Zimmerman, David E., Flack, Tara, Gilbert, Brian W., Howington, Gavin T., Laub, Jessica, Porter, Blake, Slocum, Giles W., Zepeski, Anne, Feldman, Ryan, Santiago, Ruben D., and Sarangarm, Preeyaporn
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The purpose of this article is to summarize pharmacotherapy related emergency medicine (EM) literature indexed in 2023. Articles were selected utilizing a modified Delphi approach. The table of contents from pre-determined journals were reviewed and independently evaluated via the Grading of Recommendations, Assessment, Development and Evaluation (GRADE) system by paired authors. Pharmacotherapy-related publications deemed to be GRADE 1A and 1B were reviewed by the collective group for inclusion in the review. In all, this article summarizes and provides commentary on the potential clinical impact of 13 articles, 6 guidelines, and 5 meta-analyses covering topics including guideline releases and updates on rapid sequence intubation in the critically ill, managing cardiac arrest or life-threatening toxicity due to poisoning, and management of major bleeding following trauma. Also discussed are ongoing controversies surrounding fluid resuscitation, time and treatment modalities for ischemic stroke, steroid use in community-acquired pneumonia, targeted blood product administration, and much more. [ABSTRACT FROM AUTHOR]
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- 2024
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34. Doxycycline adherence for the management of Chlamydia trachomatis infections.
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Apato, Amanda, Cruz, Stephany Nuñez, Desai, Dharati, and Slocum, Giles W.
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The updated 2021 CDC treatment guidelines recommend a single dose of 500 mg intramuscular ceftriaxone for Neisseria gonorrhea and doxycycline 100 mg by mouth twice daily for 7 days for Chlamydia trachomatis coinfection. However, there is a significant public health concern regarding patient non-adherence to the 7-day course of doxycycline. To date, there are no studies assessing this concern. Therefore, the objective of this study was to evaluate a patient's adherence to doxycycline for chlamydial infections after discharge from the Emergency Department (ED). This was an IRB-approved, single-center, retrospective cohort study evaluating the adherence to doxycycline for Chlamydia trachomatis infections. Patients who received treatment and were discharged from the ED with a doxycycline e-prescription between May 2021 and September 2022 were included. Patients were excluded if <18 years of age, pregnant, a sexual assault victim, or admitted inpatient. The primary endpoint was the incidence of doxycycline prescription pick-up after discharge from the ED. The secondary endpoint was the incidence of repeat ED visits for the same chief complaint within 28 days. Descriptive statistics were computed for all study variables and Fisher's Exact tests were used to assess the outcomes. A review of 144 patients who tested positive for chlamydia and were discharged from the ED with an e-prescription for doxycycline revealed that 18% of patients did not pick up their prescription (N = 26). Non-adherent patients were more likely to return to the ED with the same chief complaint within 28 days (23.1% vs 7.6%, OR 3.6 [1.2–11.3], p = 0.026). No differences were detected in baseline demographics, housing status, insurance type, sexual orientation, or Sexually Transmitted Infection history. For patients with a positive chlamydia infection who were discharged from the ED on doxycycline, an 18% non-adherence rate was found and a 3.6-fold higher likelihood of returning to the ED with the same chief complaint if the prescription was not picked up. [ABSTRACT FROM AUTHOR]
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- 2024
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35. Rare cases of medulloblastoma with hypermutation
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Aditi Bagchi, Ian Beddows, Albert Cornelius, Giles W. Robinson, and Scott D. Jewell
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hypermutation ,medulloblastoma ,MMRD ,POLE‐Mutations ,SHH‐Medulloblastoma ,signature 10 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Medulloblastoma is the most common malignant brain tumor of childhood and is considered a tumor with low mutational burden (~1 Mut/Mb). Therefore, though the medulloblastoma genomes have been extensively characterized in literature, reports on potential hypermutations and underlying mutagenic processes in medulloblastomas are limited. Aim In this report, we studied the landscape of mutational burden in primary and recurrent medulloblastoma. Furthermore, we wanted to understand the differences in underlying mutagenic mechanisms in medulloblastoma with low and high mutational burdens. Methods Fifty‐three primary and recurrent medulloblastoma genomic sequence were downloaded from the European Genome Archive as BAM files. Thirty‐three cases were obtained from formalin‐fixed paraffin‐embedded tissues from pathology diagnostic archives of Spectrum Health and Cooperative Human Tissue Network. Somatic mutations were called using Mutect2, following best practices guidelines for Genome Analysis Toolkit V4. Mutational signatures were analyzed using deconstructSigs. Results We identified nine medulloblastoma cases with high mutational burden (>5 Mut/Mb). Of them, five cases met the criteria of hypermutation (>10Mut/Mb), two of the five tumors had canonical mutations in the POLE proof‐reading domain, where a large proportion of mutations in these tumor genomes contributed to signature 10. The hypermutated cases also demonstrated mutational signatures 14, 15, and 21, indicating the role of mis match repair deficiency in their mutagenesis. Of the four known molecular subgroups in medulloblastoma–SHH, WNT, Group 3, and Group 4—both the POLE‐mutated cases belonged to the SHH subgroup. This report identifies rare cases of hypermutation in medulloblastoma driven by defects in DNA repair mechanisms. Conclusion Hypermutation in medulloblastoma can impact therapeutic decisions, especially at recurrence in otherwise fatal high risk SHH‐medulloblastomas. A defect in DNA repair leading to SHH ‐medulloblastoma is yet another important mechanism that should be further investigated in the genesis of these tumors. Therefore, this report provides important scientific and clinical rationale for future research looking for incidence of hypermutation in large cohorts of medulloblastoma patients.
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- 2022
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36. Deficiency in matrix metalloproteinase-2 results in long-term vascular instability and regression in the injured mouse spinal cord
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Trivedi, Alpa, Zhang, Haoqian, Ekeledo, Adanma, Lee, Sangmi, Werb, Zena, Plant, Giles W, and Noble-Haeusslein, Linda J
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Medical Biotechnology ,Biomedical and Clinical Sciences ,Neurodegenerative ,Physical Injury - Accidents and Adverse Effects ,Traumatic Head and Spine Injury ,Neurosciences ,Aetiology ,2.1 Biological and endogenous factors ,Cardiovascular ,Matrix metalloproteinases ,Contusion injury ,PDGFr beta positive pericytes ,Angiogenesis ,Vascularity ,Vascular regression ,Proliferation ,PDGFrβ positive pericytes ,Clinical Sciences ,Psychology ,Neurology & Neurosurgery ,Biological psychology - Abstract
Angiogenesis plays a critical role in wound healing after spinal cord injury. Therefore, understanding the events that regulate angiogenesis has considerable relevance from a therapeutic standpoint. We evaluated the contribution of matrix metalloproteinase (MMP)-2 to angiogenesis and vascular stability in spinal cord injured MMP-2 knockout and wildtype (WT) littermates. While MMP-2 deficiency resulted in reduced endothelial cell division within the lesioned epicenter, there were no genotypic differences in vascularity (vascular density, vascular area, and endothelial cell number) over the first two weeks post-injury. However, by 21days post-injury MMP-2 deficiency resulted in a sharp decline in vascularity, indicative of vascular regression. Complementary in vitro studies of brain capillary endothelial cells confirmed MMP-2 dependent proliferation and tube formation. As deficiency in MMP-2 led to prolonged MMP-9 expression in the injured spinal cord, we examined both short-term and long-term exposure to MMP-9 in vitro. While MMP-9 supported endothelial tube formation and proliferation, prolonged exposure resulted in loss of tubes, findings consistent with vascular regression. Vascular instability is frequently associated with pericyte dissociation and precedes vascular regression. Quantification of PDGFrβ+ pericyte coverage of mature vessels within the glial scar (the reactive gliosis zone), a known source of MMP-9, revealed reduced coverage in MMP-2 deficient animals. These findings suggest that acting in the absence of MMP-2, MMP-9 transiently supports angiogenesis during the early phase of wound healing while its prolonged expression leads to vascular instability and regression. These findings should be considered while developing therapeutic interventions that block MMPs.
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- 2016
37. Periodic void formation in chevron folds
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Dodwell, Timothy J. and Hunt, Giles W.
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Nonlinear Sciences - Pattern Formation and Solitons - Abstract
An energy-based model is developed to describe the periodic formation of voids/saddle reefs in hinge zones of chevron folds. Such patterns have been observed in a series of experiments on layers of paper, as well as in the field. A simplified hinge region in a stack of elastic layers, with straight limbs connected by convex segments, is constructed so that a void forms every m layers and repeats periodically. Energy contributions include strain energy of bending, and work done both against a confining overburden pressure and an axial compressive load. The resulting total potential energy functional for the system is minimized subject to the constraint of non-interpenetration of layers, leading to representation as a nonlinear second-order free boundary problem. Numerical solutions demonstrate that there can exist a minimum-energy m-periodic solution with m equal to 1. Good agreement is found with experiments on layers of paper.
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- 2014
38. Social training reconfigures prediction errors to shape Self-Other boundaries
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Sam Ereira, Tobias U. Hauser, Rani Moran, Giles W. Story, Raymond J. Dolan, and Zeb Kurth-Nelson
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Science - Abstract
The human brain can simulate other people’s mental processes with Self-specific and Other-specific neural circuits, but it is not known how these circuits emerge. Here, the authors show that these circuits adapt to social experience, to determine whether a computation is attributed to Self or Other.
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- 2020
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39. Patient-derived models recapitulate heterogeneity of molecular signatures and drug response in pediatric high-grade glioma
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He, Chen, Xu, Ke, Zhu, Xiaoyan, Dunphy, Paige S., Gudenas, Brian, Lin, Wenwei, Twarog, Nathaniel, Hover, Laura D., Kwon, Chang-Hyuk, Kasper, Lawryn H., Zhang, Junyuan, Li, Xiaoyu, Dalton, James, Jonchere, Barbara, Mercer, Kimberly S., Currier, Duane G., Caufield, William, Wang, Yingzhe, Xie, Jia, Broniscer, Alberto, Wetmore, Cynthia, Upadhyaya, Santhosh A., Qaddoumi, Ibrahim, Klimo, Paul, Boop, Frederick, Gajjar, Amar, Zhang, Jinghui, Orr, Brent A., Robinson, Giles W., Monje, Michelle, Freeman III, Burgess B., Roussel, Martine F., Northcott, Paul A., Chen, Taosheng, Rankovic, Zoran, Wu, Gang, Chiang, Jason, Tinkle, Christopher L., Shelat, Anang A., and Baker, Suzanne J.
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- 2021
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40. Patient-derived orthotopic xenografts of pediatric brain tumors: a St. Jude resource
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Smith, Kyle S., Xu, Ke, Mercer, Kimberly S., Boop, Frederick, Klimo, Paul, DeCupyere, Michael, Grenet, Jose, Robinson, Sarah, Dunphy, Paige, Baker, Suzanne J., Ellison, David W., Merchant, Thomas E., Upadayaya, Santhosh A., Gajjar, Amar, Wu, Gang, Orr, Brent A., Robinson, Giles W., Northcott, Paul A., and Roussel, Martine F.
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- 2020
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41. Germline Elongator mutations in Sonic Hedgehog medulloblastoma
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Waszak, Sebastian M., Robinson, Giles W,, Gudenas, Brian L., Smith, Kyle S., Forget, Antoine, Kojic, Marija, Garcia-Lopez, Jesus, Hadley, Jennifer, Hamilton, Kayla V., Indersie, Emilie, Buchhalter, Ivo, Kerssemakers, Jules, Jäger, Natalie, Sharma, Tanvi, Rausch, Tobias, Kool, Marcel, Sturm, Dominik, Jones, David T. W., Vasilyeva, Aksana, Tatevossian, Ruth G., Neale, Geoffrey, Lombard, Bérangère, Loew, Damarys, Nakitandwe, Joy, Rusch, Michael, Bowers, Daniel C., Bendel, Anne, Partap, Sonia, Chintagumpala, Murali, Crawford, John, Gottardo, Nicholas G., Smith, Amy, Dufour, Christelle, Rutkowski, Stefan, Eggen, Tone, Wesenberg, Finn, Kjaerheim, Kristina, Feychting, Maria, Lannering, Birgitta, Schüz, Joachim, Johansen, Christoffer, Andersen, Tina V., Röösli, Martin, Kuehni, Claudia E., Grotzer, Michael, Remke, Marc, Puget, Stéphanie, Pajtler, Kristian W., Milde, Till, Witt, Olaf, Ryzhova, Marina, Korshunov, Andrey, Orr, Brent A., Ellison, David W., Brugieres, Laurence, Lichter, Peter, Nichols, Kim E., Gajjar, Amar, Wainwright, Brandon J., Ayrault, Olivier, Korbel, Jan O., Northcott, Paul A., and Pfister, Stefan M.
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- 2020
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42. Medulloblastomics revisited: biological and clinical insights from thousands of patients
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Hovestadt, Volker, Ayrault, Olivier, Swartling, Fredrik J., Robinson, Giles W., Pfister, Stefan M., and Northcott, Paul A.
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- 2020
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43. Vismodegib Exerts Targeted Efficacy Against Recurrent Sonic Hedgehog–Subgroup Medulloblastoma: Results From Phase II Pediatric Brain Tumor Consortium Studies PBTC-025B and PBTC-032
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Robinson, Giles W, Orr, Brent A, Wu, Gang, Gururangan, Sridharan, Lin, Tong, Qaddoumi, Ibrahim, Packer, Roger J, Goldman, Stewart, Prados, Michael D, Desjardins, Annick, Chintagumpala, Murali, Takebe, Naoko, Kaste, Sue C, Rusch, Michael, Allen, Sariah J, Onar-Thomas, Arzu, Stewart, Clinton F, Fouladi, Maryam, Boyett, James M, Gilbertson, Richard J, Curran, Tom, Ellison, David W, and Gajjar, Amar
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Rare Diseases ,Neurosciences ,Pediatric Research Initiative ,Brain Cancer ,Cancer ,Clinical Research ,Pediatric ,Brain Disorders ,Pediatric Cancer ,Genetics ,Human Genome ,Adult ,Anilides ,Brain Neoplasms ,Female ,Hedgehog Proteins ,Humans ,Male ,Medulloblastoma ,Middle Aged ,Pyridines ,Young Adult ,Clinical Sciences ,Oncology and Carcinogenesis ,Oncology & Carcinogenesis - Abstract
PurposeTwo phase II studies assessed the efficacy of vismodegib, a sonic hedgehog (SHH) pathway inhibitor that binds smoothened (SMO), in pediatric and adult recurrent medulloblastoma (MB).Patients and methodsAdult patients enrolled onto PBTC-025B and pediatric patients enrolled onto PBTC-032 were treated with vismodegib (150 to 300 mg/d). Protocol-defined response, which had to be sustained for 8 weeks, was confirmed by central neuroimaging review. Molecular tests to identify patterns of response and insensitivity were performed when tissue was available.ResultsA total of 31 patients were enrolled onto PBTC-025B, and 12 were enrolled onto PBTC-032. Three patients in PBTC-025B and one in PBTC-032, all with SHH-subgroup MB (SHH-MB), exhibited protocol-defined responses. Progression-free survival (PFS) was longer in those with SHH-MB than in those with non-SHH-MB, and prolonged disease stabilization occurred in 41% of patient cases of SHH-MB. Among those with SHH-MB, loss of heterozygosity of PTCH1 was associated with prolonged PFS, and diffuse staining of P53 was associated with reduced PFS. Whole-exome sequencing identified mutations in SHH genes downstream from SMO in four of four tissue samples from nonresponders and upstream of SMO in two of four patients with favorable responses.ConclusionVismodegib exhibits activity against adult recurrent SHH-MB but not against recurrent non-SHH-MB. Inadequate accrual of pediatric patients precluded conclusions in this population. Molecular analyses support the hypothesis that SMO inhibitor activity depends on the genomic aberrations within the tumor. Such inhibitors should be advanced in SHH-MB studies; however, molecular and genomic work remains imperative to identify target populations that will truly benefit.
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- 2015
44. A semi-analytical model for the wrinkling of laminates during consolidation over a corner radius
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Dodwell, Timothy J., Butler, Richard, and Hunt, Giles W.
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Nonlinear Sciences - Pattern Formation and Solitons - Abstract
If carbon fibre layers are prevented from slipping over one another as they consolidate onto a non-trivial geometry, they can be particularly susceptible to wrinkling/buckling instabilities. A one dimensional model for wrinkling during consolidation over an external radius is presented. Critical conditions for the appearance of wrinkles provide possible manufacturing and design strategies to minimise wrinkling. Numerical results for the unstable post buckling paths show localized buckling behaviour which demonstrates qualitative agreement with micrographs of wrinkles., Comment: 9 Pages, 8 figures, submitted to Composite Science and Technology May 2013
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- 2013
45. Evaluating pediatric spinal low-grade gliomas: a 30-year retrospective analysis
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Carey, Steven S., Sadighi, Zsila, Wu, Shengjie, Chiang, Jason, Robinson, Giles W., Ghazwani, Yahya, Liu, Anthony P. Y., Acharya, Sahaja, Merchant, Thomas E., Boop, Frederick A., Gajjar, Amar, and Qaddoumi, Ibrahim
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- 2019
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46. Turbulent transition in a truncated one-dimensional model for shear flow
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Dawes, J. H. P. and Giles, W. J.
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Physics - Fluid Dynamics ,Nonlinear Sciences - Chaotic Dynamics ,Nonlinear Sciences - Pattern Formation and Solitons ,76F20, 76E05, 76E30, 37N10 - Abstract
We present a reduced model for the transition to turbulence in shear flow that is simple enough to admit a thorough numerical investigation while allowing spatio-temporal dynamics that are substantially more complex than those allowed in previous modal truncations. Our model allows a comparison of the dynamics resulting from initial perturbations that are localised in the spanwise direction with those resulting from sinusoidal perturbations. For spanwise-localised initial conditions the subcritical transition to a `turbulent' state (i) takes place more abruptly, with a boundary between laminar and `turbulent' flow that is appears to be much less `structured' and (ii) results in a spatiotemporally chaotic regime within which the lifetimes of spatiotemporally complicated transients are longer, and are even more sensitive to initial conditions. The minimum initial energy $E_0$ required for a spanwise-localised initial perturbation to excite a chaotic transient has a power-law scaling with Reynolds number $E_0 \sim Re^p$ with $p \approx -4.3$. The exponent $p$ depends only weakly on the width of the localised perturbation and is lower than that commonly observed in previous low-dimensional models where typically $p \approx -2$. The distributions of lifetimes of chaotic transients at fixed Reynolds number are found to be consistent with exponential distributions., Comment: 22 pages. 11 figures. To appear in Proc. Roy. Soc. A
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- 2011
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47. Norepinephrine versus epinephrine for hemodynamic support in post-cardiac arrest shock: A systematic review.
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Lawson, Christine K., Faine, Brett A., Rech, Megan A., Childs, Christopher A., Brown, Caitlin S., Slocum, Giles W., Acquisto, Nicole M., and Ray, Lance
- Abstract
The preferred vasopressor in post-cardiac arrest shock has not been established with robust clinical outcomes data. Our goal was to perform a systematic review and meta-analysis comparing rates of in-hospital mortality, refractory shock, and hemodynamic parameters in post-cardiac arrest patients who received either norepinephrine or epinephrine as primary vasopressor support. We conducted a search of PubMed, Cochrane Library, and CINAHL from 2000 to 2022. Included studies were prospective, retrospective, or published abstracts comparing norepinephrine and epinephrine in adults with post-cardiac arrest shock or with cardiogenic shock and extractable post-cardiac arrest data. The primary outcome of interest was in-hospital mortality. Other outcomes included incidence of arrhythmias or refractory shock. The database search returned 2646 studies. Two studies involving 853 participants were included in the systematic review. The proposed meta-analysis was deferred due to low yield. Crude incidence of in-hospital mortality was numerically higher in the epinephrine group compared with norepinephrine in both studies, but only statistically significant in one. Risk of bias was moderate to severe for in-hospital mortality. Additional outcomes were reported differently between studies, minimizing direct comparison. The vasopressor with the best mortality and hemodynamic outcomes in post-cardiac arrest shock remains unclear. Randomized studies are crucial to remedy this. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
48. Hypothenar hammer syndrome: Case report and literature review
- Author
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Marcus P. Carr, MD, MPH, Giles W. Becker, MD, Mihra S. Taljanovic, MD, PhD, and Wendy E. McCurdy, MD
- Subjects
Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Hypothenar hammer syndrome is a rare but serious cause of digital ischemia and morbidity. Presented here is a case of a manual laborer who had symptoms of digital ischemia after acute hyperextension injury to the ring finger. Magnetic resonance imaging revealed thrombosed ulnar artery aneurysm. Etiology, presentation, and current treatments are reviewed. Keywords: Hypothenar hammer syndrome, Ulnar artery aneurysm, MR imaging, MR angiogram
- Published
- 2019
- Full Text
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49. WNT-activated embryonal tumors of the pineal region: ectopic medulloblastomas or a novel pineoblastoma subgroup?
- Author
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Liu, Anthony P. Y., Priesterbach-Ackley, Loudy P., Orr, Brent A., Li, Bryan K., Gudenas, Brian, Reddingius, Roel E., Suñol, Mariona, Lavarino, Cinzia E., Olaciregui, Nagore G., Santa-María López, Vicente, Fisher, Michael J., Hazrati, Lili-Naz, Bouffet, Eric, Huang, Annie, Robinson, Giles W., Wesseling, Pieter, Northcott, Paul A., and Gajjar, Amar
- Published
- 2020
- Full Text
- View/download PDF
50. Correction to: Risk-adapted therapy and biological heterogeneity in pineoblastoma: integrated clinico-pathological analysis from the prospective, multi-center SJMB03 and SJYC07 trials
- Author
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Liu, Anthony P. Y., Gudenas, Brian, Lin, Tong, Orr, Brent A., Klimo, Jr., Paul, Kumar, Rahul, Bouffet, Eric, Gururangan, Sridharan, Crawford, John R., Kellie, Stewart J., Chintagumpala, Murali, Fisher, Michael J., Bowers, Daniel C., Hassall, Tim, Indelicato, Daniel J., Onar-Thomas, Arzu, Ellison, David W., Boop, Frederick A., Merchant, Thomas E., Robinson, Giles W., Northcott, Paul A., and Gajjar, Amar
- Published
- 2020
- Full Text
- View/download PDF
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