16 results on '"Gilbert Rakotoarisoa"'
Search Results
2. PRINS analysis of the telomeric sequence in seven lemurs
- Author
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Go, Yasuhiro, Millon, Gilbert Rakotoarisoa, Kawamoto, Yoshi, Randrianjafy, Albert, Koyama, Naoki, and Hirai, Hirohisa
- Published
- 2000
3. Anatomy and Adaptations of the Chewing Muscles inDaubentonia(Lemuriformes)
- Author
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Kristen E. Macneill, Amanda L. Heckler, Adam Hartstone-Rose, Gilbert Rakotoarisoa, and Jonathan M. G. Perry
- Subjects
Histology ,biology ,Ontogeny ,Pinnation ,Foraging ,Lemur ,Anatomy ,stomatognathic system ,biology.animal ,Fascicle length ,Juvenile ,Primate ,Adductor muscles ,Ecology, Evolution, Behavior and Systematics ,Biotechnology - Abstract
The extractive foraging behavior in aye-ayes (Daubentonia madagascariensis) is unique among primates and likely has led to selection for a specialized jaw adductor musculature. Although this musculature has previously been examined in a subadult, until now, no one has reported the fascicle length, weight, and physiological cross-sectional area (PCSA) for these muscles in an adult aye-aye specimen. For the present study, we dissected an adult wild-born aye-aye from the Tsimbazaza Botanical and Zoological Park, Antananarivo, Madagascar. The aye-aye follows the general strepsirrhine pattern in its overall jaw adductor muscle anatomy, but has very large muscles and PCSA relative to body size. Fascicle length is also relatively great, but not nearly as much as in the juvenile aye-aye previously dissected. Perhaps chewing muscle fascicles begin relatively long, but shorten through use and growth as connective tissue sheets expand and allow for pinnation and increased PCSA. Alternately, it may be that aye-ayes develop fascicular adaptation to wide gapes early in ontogeny, only to increase PCSA through later development into adulthood. The functional demands related to their distinctive manner of extractive foraging are likely responsible for the great PCSA in the jaw adductor muscles of the adult aye-aye. It may be that great jaw adductor PCSA in the adult, as compared to the juvenile, is a means of increasing foraging efficiency in the absence of parental assistance. Anat Rec, 297:308–316, 2014. V C 2013 Wiley Periodicals, Inc.
- Published
- 2013
4. Evaluating the Genetic Diversity of Three Endangered Lemur Species (Genus: Propithecus) from Northern Madagascar
- Author
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Carolyn A. Bailey, Jean Claude Randriamanana, Runhua Lei, Melissa T. R. Hawkins, Gilbert Rakotoarisoa, Gary D. Shore, Sébastien Rioux Paquette, Andriamahery Razafindrakoto, Edward E. Louis, Rick A. Brenneman, Susie M. McGuire, Joseph Désiré Rabekinaja, and Adam T. McLain
- Subjects
Genetic diversity ,Evolutionary biology ,biology.animal ,Endangered species ,Microsatellite ,Genus Propithecus ,Lemur ,Population genetics ,Biology ,Genealogy - Published
- 2016
5. Characterization of 13 microsatellite marker loci in Verreaux's sifaka (Propithecus verreauxi)
- Author
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Rick A. Brenneman, Gary E. Shore, Susie M. McGuire, Jr Edward E. Louis, Shannon E. Engberg, and Gilbert Rakotoarisoa
- Subjects
Ecology ,biology ,Propithecus ,Endangered species ,Zoology ,Locus (genetics) ,biology.organism_classification ,Biochemistry ,General Biochemistry, Genetics and Molecular Biology ,Sifaka ,Loss of heterozygosity ,Genetic marker ,Microsatellite ,Verreaux's sifaka - Abstract
The Verreaux's sifaka (Propithecus verreauxi) is one of the species of Propithecus, living in the dry forest of southwest Madagascar. This species is endangered due to the loss and fragmentation of its natural habitat, a consequence of deforestation. Thirteen novel nuclear microsatellite loci were isolated and characterized in three populations of Verreaux's sifaka. The marker suite proved informative with an average of 8.9 alleles per locus and observed heterozygosity across the three populations of 0.675.
- Published
- 2006
6. Frequent segmental sequence exchanges and rapid gene duplication characterize the MHC class I genes in lemurs
- Author
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Gilbert Rakotoarisoa, Hirohisa Hirai, Yoko Satta, Yasuhiro Go, Albert Randrianjafy, Naoki Koyama, and Yoshi Kawamoto
- Subjects
Lineage (evolution) ,Pseudogene ,Immunology ,Gene Conversion ,Lemur ,Major histocompatibility complex ,MHC Class II Gene ,Evolution, Molecular ,Major Histocompatibility Complex ,Gene Duplication ,biology.animal ,Gene duplication ,Genetics ,Animals ,Selection, Genetic ,Phylogeny ,Recombination, Genetic ,Phylogenetic tree ,biology ,Histocompatibility Antigens Class I ,MHC Class I Gene ,Evolutionary biology ,biology.protein ,Pseudogenes - Abstract
Major histocompatibility complex (MHC) class I genes have complicated and profound evolutionary histories. To reconstruct and better understand their histories, partial class I genes (exon 2-intron 2-exon 3) were sequenced in a sampling of prosimians (Strepsirhini, Primates). In total, we detected 117 different sequences from 36 Malagasy prosimians (lemurs) and 1 non-Malagasy prosimian (galago) representing 4 families, 7 genera, and 13 species. Unlike the MHC class II genes ( MHC-DRB), MHC class I genes show a generally genus-specific mode of evolution in lemurs. Additionally, no prosimian class I loci were found to be orthologous to HLA genes, even at highly conserved loci (such as HLA-E, HLA-F). Phylogenetic analysis indicates that nucleotide diversity among loci was very small and the persistence time of the polymorphisms was short, suggesting that the origin of the lemur MHC class I genes detected in this study was relatively recent. The evolutionary mode of these genes is similar to that of classic HLA genes, HLA-A, HLA-B, and HLA-C, in terms of their recent origin and rarity of pseudogenes, and differs from them with respect to the degree of gene duplications. From the viewpoint of MHC genes evolution, some interlocus sequence exchanges were apparently observed in the lemur lineage upon phylogenetic and amino acid motif analyses. This is also in contrast to the evolutionary mode of HLA genes, where intralocus exchanges have certainly occurred but few interlocus exchanges have taken place. Consequently, the gene conversion model for explaining the generation of the MHC diversity among different loci can be thought to play more important roles in the evolution of lemur MHC class I genes than in that of HLA genes.
- Published
- 2003
7. Mhc-DRB genes evolution in lemurs
- Author
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Naoki Koyama, Yoshi Kawamoto, Yoko Satta, Yasuhiro Go, Albert Randrianjafy, Gilbert Rakotoarisoa, and Hirohisa Hirai
- Subjects
Primates ,Time Factors ,Base Pair Mismatch ,Amino Acid Motifs ,Genes, MHC Class II ,Molecular Sequence Data ,Immunology ,Lemur ,Simian ,Evolution, Molecular ,Species Specificity ,Phylogenetics ,biology.animal ,Genetic variation ,Madagascar ,Genetics ,Animals ,Primate ,Amino Acid Sequence ,Selection, Genetic ,Gene ,Phylogeny ,Base Sequence ,Sequence Homology, Amino Acid ,biology ,Phylogenetic tree ,Histocompatibility Antigens Class II ,Genetic Variation ,DNA ,biology.organism_classification ,Synonymous substitution - Abstract
Partial exon 2 sequences (202 bp) of the lemur Mhc-DRB genes were sequenced. A total of 137 novel sequences were detected in 66 lemurs, representing four out of the five extant families. Trans-species polymorphisms and even identical sequences were observed not only among genera but also among families. Based on the time-scale of lemur evolution, these findings suggest that some identical sequences have been maintained for more than 40 million years. This is in contrast to the evolutionary mode of simian DRB genes, where such identical sequences have been retained for at most several million years. To explore the reasons behind these unexpected findings, the degree of recombination and the synonymous substitution rate in lemurs and simians were examined. We found that (1) little difference existed in the extent of recombination, (2) frequent recombination occurred within the alpha-helix as well as between the beta-pleated sheet and the alpha-helix, and (3) the synonymous substitution rate was significantly reduced in lemur lineages. Upon phylogenetic analysis, lemur DRB genes were clustered by themselves and separated from the other primate DRB genes (simians and non-Malagasy prosimians). This result suggests that the DRB variations in extant lemur populations have been generated after the divergence of the lemurs from the remaining primates. This mode of substitution accumulation is also supported by a pattern of mismatch distribution among lemur DRB genes. These observations correspond with the postulation that a severe bottleneck occurred when the ancestors of lemurs settled into Madagascar from the African continent.
- Published
- 2002
8. [Untitled]
- Author
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C. Rabarivola, Y. Rumpler, Prosper, Gilbert Rakotoarisoa, Marcel Hauwy, and Bernard Dutrillaux
- Subjects
Systematics ,biology ,Heterochromatin ,fungi ,Zoology ,Chromosome ,Lemur ,Karyotype ,Subspecies ,biology.organism_classification ,Hapalemur griseus ,Phylogenetics ,biology.animal ,Genetics - Abstract
A cytogenetic study has been performed on Hapalemur griseus caught in different locations of the eastern and northern forests of Madagascar. This allowed the determination of the more precise distribution areas of the different subspecies and the isolation of a new cytogenetic polymorphic subspecies of H. griseus. The chromosomal changes distinguishing the different subspecies are Robertsonian translocations and gain of heterochromatin. The phylogeny established on chromosome comparison is compatible with the geographic distribution of the subspecies.
- Published
- 2002
9. Chromosomal localization of 18S rDNA and telomere sequence in the aye-aye, Daubentonia madagascariensis
- Author
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Yasuhiro Go, Gilbert Rakotoarisoa, Hirohisa Hirai, Naoki Koyama, Roger Mora, Yoshi Kawamoto, Albert Randrianjafy, Yuriko Hirai, and Taizo Shima
- Subjects
Male ,Silver Staining ,Transcription, Genetic ,Biology ,DNA, Ribosomal ,Chromosomes ,Evolution, Molecular ,Centromere ,Nucleolus Organizer Region ,RNA, Ribosomal, 18S ,Genetics ,medicine ,Animals ,Humans ,Molecular Biology ,Gene ,Ribosomal DNA ,In Situ Hybridization, Fluorescence ,medicine.diagnostic_test ,Lemur ,Chromosome Mapping ,Chromosome ,Karyotype ,General Medicine ,Telomere ,Ribosomal RNA ,Karyotyping ,Female ,Fluorescence in situ hybridization - Abstract
Chromosomal localization of 18S rDNA and telomere sequence was attempted on the chromosomes of the aye-aye (2n = 30) using fluorescence in situ hybridization (FISH) and primed in situ labeling (PRINS), respectively. The rDNA was localized at the tip or whole of the short arm of acrocentric chromosomes 13 and 14 in all spreads observed. However, post-FISH silver-nitrate (Ag) staining showed that transcriptional activity of the rRNA genes was variable, particularly in chromosome 14, which was most frequently negative in one homologue carrying the smaller copy number of rDNA. This observation supports, at the molecular cytogenetic level, previous data concerning the relationship between the copy number of rDNA and its trancriptional activity. On the other hand, telomere sequence was localized only at the telomeric region of all chromosomes, the so-called telomere-only pattern, a characteristic similar to that of the greater bushbaby. These data may provide information on the chromosomal evolution of the lemur, because locations of rDNA and telomere sequences frequently offer important clues in reconstruction of karyotype differentiation.
- Published
- 2000
10. [Untitled]
- Author
-
Hirohisa Hirai, Gilbert Rakotoarisoa, Albert Randrianjafy, Yoshi Kawamoto, Naoki Koyama, and Yasuhiro Go
- Subjects
Genetics ,Heterochromatin ,biology.animal ,Centromere ,Constitutive heterochromatin ,Lemur ,Chromosome ,Chromosomal translocation ,Karyotype ,Gene rearrangement ,Biology - Abstract
We examined the chromosomal localization of the telomeric sequence, (TTAGGG)n, in seven species of the lemurs and one greater galago, as an outgroup, using the primed in-situ labeling (PRINS) technique. As expected, the telomeric sequence was identified at both ends of all chromosomes of the eight prosimians. However, six species showed a signal at some pericentromeric regions involving constitutive heterochromatin as well. The pericentromeric region of chromosome 1 of Verreaux's sifaka (Propithecus verreauxi verreauxi) was labeled with a large and intense signal. The range of the signal considerably exceeded the area of DAPI positive heterochromatin. On the other hand, in the five lemurs, a large signal was detected also in the short arm of acrocentric chromosomes. Acquisition of the large block of the telomeric sequence into the acrocentric short arm might be interpretable in terms of the tandem growth of the heterochromatic short arm and the reciprocal translocation between heterochromatic short arms involving the telomeric sequence. Subsequently, it was postulated that meta- or submetacentric chromosomes possessing the telomeric sequence at the pericentromeric region could be formed by centric fusion between such acrocentric chromosomes.
- Published
- 2000
11. Characterization of 20 microsatellite marker loci in Coquerel's sifaka (Propithecus coquereli)
- Author
-
Rick A. Brenneman, Gary D. Shore, Susie M. McGuire, Edward Louis, Gilbert Rakotoarisoa, and Shannon E. Engberg
- Subjects
Coquerel's sifaka ,education.field_of_study ,Ecology ,biology ,Population ,Endangered species ,Propithecus ,biology.organism_classification ,Biochemistry ,General Biochemistry, Genetics and Molecular Biology ,Sifaka ,Genetic marker ,Deforestation ,parasitic diseases ,Microsatellite ,education - Abstract
The Coquerel's sifaka (Propithecus coquereli) is one of the species of Propithecus, living in the dry forest of northwest Madagascar. This species is endangered due to the loss and fragmentation of its natural habitat, consequential of deforestation. Twenty nuclear microsatellite loci were isolated from genomic DNA derived from a free ranging Coquerel's sifaka from the Mariarano Classified Forest, Madagascar. Population genetic parameters were estimated as baseline values from samples collected in that forest.
- Published
- 2006
12. Anatomy and adaptations of the chewing muscles in Daubentonia (Lemuriformes)
- Author
-
Jonathan M G, Perry, Kristen E, Macneill, Amanda L, Heckler, Gilbert, Rakotoarisoa, and Adam, Hartstone-Rose
- Subjects
Aging ,Strepsirhini ,Jaw ,Masticatory Muscles ,Animals ,Body Size ,Mastication ,Regression Analysis ,Female ,Adaptation, Physiological ,Models, Biological ,Phylogeny - Abstract
The extractive foraging behavior in aye-ayes (Daubentonia madagascariensis) is unique among primates and likely has led to selection for a specialized jaw adductor musculature. Although this musculature has previously been examined in a subadult, until now, no one has reported the fascicle length, weight, and physiological cross-sectional area (PCSA) for these muscles in an adult aye-aye specimen. For the present study, we dissected an adult wild-born aye-aye from the Tsimbazaza Botanical and Zoological Park, Antananarivo, Madagascar. The aye-aye follows the general strepsirrhine pattern in its overall jaw adductor muscle anatomy, but has very large muscles and PCSA relative to body size. Fascicle length is also relatively great, but not nearly as much as in the juvenile aye-aye previously dissected. Perhaps chewing muscle fascicles begin relatively long, but shorten through use and growth as connective tissue sheets expand and allow for pinnation and increased PCSA. Alternately, it may be that aye-ayes develop fascicular adaptation to wide gapes early in ontogeny, only to increase PCSA through later development into adulthood. The functional demands related to their distinctive manner of extractive foraging are likely responsible for the great PCSA in the jaw adductor muscles of the adult aye-aye. It may be that great jaw adductor PCSA in the adult, as compared to the juvenile, is a means of increasing foraging efficiency in the absence of parental assistance. Anat Rec, 297:308-316, 2014. © 2013 Wiley Periodicals, Inc.
- Published
- 2013
13. What Can Virtual Vocal Tracts Tell Us About Lemur Communication?
- Author
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Marco Gamba, Gilbert Rakotoarisoa, Haingoson Andriamialison, Cristina Giacoma, and Jules Medard
- Subjects
Vocal communication ,Formant ,biology ,biology.animal ,Nasopharyngeal cavity ,otorhinolaryngologic diseases ,Lemur ,Primate ,Anatomy ,respiratory system ,Vocal tract ,Acoustic response - Abstract
Recent research emphasizes the importance of species-specific acoustic signals in primate vocal communication. We examine the potential of nasal tract resonance in generating these signals using anatomically based vocal tract computational modeling in lemurs. True lemurs (Eulemur) show a remarkable species diversity, and nasal vocalizations play a crucial role in their communication systems. The supralaryngeal cavities (glottal constriction, nasopharyngeal cavity, nasal chambers, and nostrils) of E. coronatus, E. rufus, E. rubriventer, E. macaco, and E. fulvus were approximated as fixed-length concatenated tubes, variable in number according to nasal tract length and varying in size according to anatomical measurements. Formants extracted from the acoustic response of the computational models showed that differences in morphological features between lemur taxa determine the structural characters of their vocalizations.
- Published
- 2012
14. Considerable Synteny and Sequence Similarity of Primate Chromosomal Region VIIq31
- Author
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Anthony J. Tosi, Dondin Sajuthi, Yuriko Hirai, Hirohisa Hirai, Joko Pamungkas, Gilbert Rakotoarisoa, Yasuhiro Go, Sudarath Baicharoen, and Israt Jahan
- Subjects
Primates ,Pan troglodytes ,Biology ,Genome ,Chromosome Painting ,Evolution, Molecular ,03 medical and health sciences ,0302 clinical medicine ,Sequence Homology, Nucleic Acid ,Genetics ,Animals ,Humans ,Computer Simulation ,Molecular Biology ,Gene ,Genetics (clinical) ,Conserved Sequence ,In Situ Hybridization, Fluorescence ,030304 developmental biology ,Synteny ,Chromosomal inversion ,Chromosome 7 (human) ,0303 health sciences ,Pan paniscus ,Subtelomere ,Chromosome microdissection ,Chromosomes, Mammalian ,Evolutionary biology ,030220 oncology & carcinogenesis ,Chromosomal region ,Chromosomes, Human, Pair 7 - Abstract
Human chromosome 7 has been the focus of many behavioral, genetic, and medical studies because it carries genes related to cancer and neurodevelopment. We examined the evolution of the chromosome 7 homologs, and the 7q31 region in particular, using chromosome painting analyses and 3 paint probes derived from (i) the whole of chimpanzee chromosome VII (wcVII), (ii) human 7q31 (h7q31), and (iii) the chimpanzee homolog VIIq31 (cVIIq31). The wcVII probe was used instead of the whole human chromosome 7 because the chimpanzee contains additional C-bands and revealed large areas of synteny conservation as well as fragmentation across 20 primate species. Analyses focusing specifically on the 7q31 homolog and vicinity revealed considerable conservation across lineages with 2 exceptions. First, the probes verified an insertion of repetitive sequence at VIIq22 in chimpanzees and bonobos and also detected the sequence in most subtelomeres of the African apes. Second, a paracentric inversion with a breakpoint in the cVIIq31 block was found in the common marmoset, confirming earlier studies. Subsequent in silico comparative genome analysis of 17 primate species revealed that VIIq31.1 is more significantly conserved at the sequence level than other regions of chromosome VII, which indicates that its components are likely responsible for critical shared traits across the order, including conditions necessary for proper human development and wellbeing.
- Published
- 2009
15. Characterization and evolution of major histocompatibility complex class II genes in the aye-aye, Daubentonia madagascariensis
- Author
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Yoshi Kawamoto, Taizo Shima, Hirohisa Hirai, Naoki Koyama, Gilbert Rakotoarisoa, Albert Randrianjafy, Roger Mora, and Yasuhiro Go
- Subjects
Population ,Genes, MHC Class II ,Molecular Sequence Data ,Lemur ,Major histocompatibility complex ,Evolution, Molecular ,Species Specificity ,Phylogenetics ,biology.animal ,Genetic variation ,Madagascar ,Animals ,Cluster Analysis ,Allele ,education ,Phylogeny ,DNA Primers ,education.field_of_study ,biology ,Base Sequence ,Geography ,Aye-aye ,Genetic Variation ,Sequence Analysis, DNA ,biology.organism_classification ,Strepsirhini ,Evolutionary biology ,Animal ecology ,biology.protein ,Animal Science and Zoology - Abstract
Major histocompatibility complex genes (Mhc-DQB and Mhc-DRB) were sequenced in seven aye-ayes (Daubentonia madagascariecsis), which is an endemic and endangered species in Madagascar. An aye-aye from a north-eastern population showed genetic relatedness to individuals of a north-western population and had a somewhat different repertoire from another north-eastern individual. These observations suggest that the extent of genetic variation in Mhc genes is not excessively small in the aye-aye in spite of recent rapid destruction of their habitat by human activities. In light of Mhc gene evolution, trans-species and allelic polymorphisms can be estimated to have been retained for more than 50 Ma (million years) based on the time scale of lemur evolution.
- Published
- 2003
16. Chromosomal evolution of the Hapalemur griseus subspecies (Malagasy Prosimian), including a new chromosomal polymorphic cytotype
- Author
-
Yves, Rumpler, Prosper, Marcel, Hauwy, Clement, Rabarivola, Gilbert, Rakotoarisoa, and Bernard, Dutrillaux
- Subjects
Evolution, Molecular ,Male ,Heterochromatin ,Karyotyping ,Lemuridae ,Animals ,Female ,Chromosomes ,Translocation, Genetic ,Chromosome Banding - Abstract
A cytogenetic study has been performed on Hapalemur griseus caught in different locations of the eastern and northern forests of Madagascar. This allowed the determination of the more precise distribution areas of the different subspecies and the isolation of a new cytogenetic polymorphic subspecies of H. griseus. The chromosomal changes distinguishing the different subspecies are Robertsonian translocations and gain of heterochromatin. The phylogeny established on chromosome comparison is compatible with the geographic distribution of the subspecies.
- Published
- 2002
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