109 results on '"Ghaffari N"'
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2. HRS-Expertenkonsensus (2017) Sondenmanagement und -extraktion von kardialen elektronischen Implantaten sowie EHRA-Expertenkonsensus (2018) zur wissenschaftlichen Aufarbeitung von Sondenextraktionen: Kommentar der AG Herzrhythmusstörungen der Deutschen Gesellschaft für Thorax‑, Herz- und Gefäßchirurgie
- Author
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Starck, C. T., Burger, H., Osswald, B., Hakmi, S., Knaut, M., Bimmel, D., Bärsch, V., Eitz, T., Mierzwa, M., Ghaffari, N., and Siebel, A.
- Published
- 2021
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3. Lead Extraction of Very Old Leads—A GALLERY Subgroup Analysis.
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Pecha, S., Burger, H., Chung, D.U., Madej, T., Maali, A., Osswald, B., De Simone, R., Monsefi, N. PD Dr. med., Ziaukas, V., Erler, S., Elfarra, H., Perthel, M., Wehbe, M., Ghaffari, N., Sandhaus, T., Busk, H., Schmitto, JD., Bärsch, V., Easo, J., and Albert, M.
- Subjects
SUBGROUP analysis (Experimental design) - Abstract
This article, titled "Lead Extraction of Very Old Leads¿A GALLERY Subgroup Analysis," discusses the safety and efficacy of laser lead extraction in a subgroup of patients with leads implanted for at least 10 years. The study analyzed data from the German Laser Lead Extraction Registry (GALLERY) and found that transvenous lead extraction in leads aged 10 years or more had a high success rate and low complication rates, with a low procedure-related mortality. The article concludes that increased lead age should not be a contraindication for lead extraction. [Extracted from the article]
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- 2024
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4. Die „Opferelektrode“: Eine sichere Option zum Management von Schrittmacherinfektionen bei schrittmacherpflichtigen Patienten
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Ghaffari, N., Arslan, I., Stahlhut, P., Mehlhorn, U., and Conzelmann, L. O.
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- 2018
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5. Safety and efficacy of Laser lead extraction in octo- and nonagenarians. A Subgroup Analysis from the GALLERY registry
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Pecha, S, primary, Chung, D, additional, Burger, H, additional, Moeller, V, additional, Osswald, B, additional, Naegele, H, additional, Baersch, V, additional, Ghaffari, N, additional, Knaut, M, additional, Reichenspurner, H, additional, Willems, S, additional, Butter, C, additional, and Hakmi, S, additional
- Published
- 2023
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6. W2 barycenters for radially related distributions
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Ghaffari, N., primary and Walker, S.G., additional
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- 2023
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7. Safety and Efficacy of Laser Lead Extraction in Octo- and Nonagenarians: A Subgroup Analysis from the GALLERY Registry
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Pecha, S., additional, Burger, H., additional, Chung, D. U., additional, Möller, V., additional, Madej, T., additional, Maali, A., additional, Osswald, B., additional, De Simone, R., additional, Monsefi, N., additional, Ziaukas, V., additional, Erler, S., additional, Perthel, M., additional, Wehbe, M. S., additional, Ghaffari, N., additional, Sandhaus, T., additional, Busk, H., additional, Schmitto, J. D., additional, Bärsch, V., additional, Easo, J., additional, Albert, M., additional, Treede, H., additional, Nägele, H., additional, Zenker, D., additional, Hegazy, Y., additional, Gessler, N., additional, Knaut, M., additional, Reichenspurner, H., additional, Willems, S., additional, Butter, C., additional, and Hakmi, S., additional
- Published
- 2023
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8. [formula omitted] barycenters for radially related distributions
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Ghaffari, N. and Walker, S.G.
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- 2023
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9. Parseval’s identity and optimal transport maps
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Ghaffari, N. and Walker, S.G.
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- 2021
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10. Selection policy-induced reduction mappings for boolean networks
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Ivanov, I., Simeonov, P., Ghaffari, N., Xiaoning Qian, and Dougherty, E.R.
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Algebra, Boolean -- Usage ,Cartography -- Usage ,Distribution (Probability theory) -- Methods ,Signal processing -- Innovations ,Digital signal processor ,Business ,Computers ,Electronics ,Electronics and electrical industries - Published
- 2010
11. Anti-proliferative effects of shikonin derivatives on medullary thyroid carcinoma cell lines: Abstract no. 22
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Hasenoehrl, C., Schwach, G., Tabrizi-Wizsy, Ghaffari N., Kretschmer, N., Bauer, R., and Pfragner, R.
- Published
- 2013
12. ADAM28 overexpression modulates cell proliferation in human osteosarcoma cell line U2OS and induces angiogenesis: Abstract no. 14
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Tabrizi-Wizsy, Ghaffari N., Albrecher, N. M., Jöhrer, K., Tam-Amersdorfer, C., Maurer-Ertl, W., Leithner, A., Kuerzl, G., Haas, H. S., and Sadjak, A.
- Published
- 2013
13. 1255Comprehensive analysis of pacemaker patients with and without abandoned leads undergoing transvenous lead extraction: A GALLERY subgroup analysis
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Chung, D, primary, Pecha, S, additional, Burger, H, additional, Moeller, V, additional, Madej, T, additional, Osswald, B, additional, Ghaffari, N, additional, Baersch, V, additional, Naegele, H, additional, Gosau, N, additional, Knaut, M, additional, Butter, C, additional, Willems, S, additional, and Hakmi, S, additional
- Published
- 2020
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14. Clinical trial: the effect of amitriptyline in patients with diarrhoea-predominant irritable bowel syndrome
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VAHEDI, H., MERAT, S., MOMTAHEN, S., KAZZAZI, A. S., GHAFFARI, N., OLFATI, G., and MALEKZADEH, R.
- Published
- 2008
15. The Pacific Biosciences de novo assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, Haemaphysalis longicornis Neumann, 1901.
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Guerrero, FD, Bendele, KG, Ghaffari, N, Guhlin, J, Gedye, KR, Lawrence, KE, Dearden, PK, Harrop, TWR, Heath, ACG, Lun, Y, Metz, RP, Teel, P, Perez de Leon, A, Biggs, PJ, Pomroy, WE, Johnson, CD, Blood, PD, Bellgard, SE, Tompkins, DM, Guerrero, FD, Bendele, KG, Ghaffari, N, Guhlin, J, Gedye, KR, Lawrence, KE, Dearden, PK, Harrop, TWR, Heath, ACG, Lun, Y, Metz, RP, Teel, P, Perez de Leon, A, Biggs, PJ, Pomroy, WE, Johnson, CD, Blood, PD, Bellgard, SE, and Tompkins, DM
- Abstract
The longhorned tick, Haemaphysalis longicornis, feeds upon a wide range of bird and mammalian hosts. Mammalian hosts include cattle, deer, sheep, goats, humans, and horses. This tick is known to transmit a number of pathogens causing tick-borne diseases, and was the vector of a recent serious outbreak of oriental theileriosis in New Zealand. A New Zealand-USA consortium was established to sequence, assemble, and annotate the genome of this tick, using ticks obtained from New Zealand's North Island. In New Zealand, the tick is considered exclusively parthenogenetic and this trait was deemed useful for genome assembly. Very high molecular weight genomic DNA was sequenced on the Illumina HiSeq4000 and the long-read Pac Bio Sequel platforms. Twenty-eight SMRT cells produced a total of 21.3 million reads which were assembled with Canu on a reserved supercomputer node with access to 12 TB of RAM, running continuously for over 24 days. The final assembly dataset consisted of 34,211 contigs with an average contig length of 215,205 bp. The quality of the annotated genome was assessed by BUSCO analysis, an approach that provides quantitative measures for the quality of an assembled genome. Over 95% of the BUSCO gene set was found in the assembled genome. Only 48 of the 1066 BUSCO genes were missing and only 9 were present in a fragmented condition. The raw sequencing reads and the assembled contigs/scaffolds are archived at the National Center for Biotechnology Information.
- Published
- 2019
16. P11.03: Predictors of TTTS and SIUGR in monochorionic diamniotic twin pregnancies
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Miller, E., primary, Gosnell, K., additional, Rand, L., additional, Gonzalez, J., additional, Blat, C., additional, and Ghaffari, N., additional
- Published
- 2019
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17. The German Laser Lead Extraction Registry: GALLERY
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Pecha, S., additional, Burger, H., additional, Möller, V., additional, Madej, T., additional, Osswald, B., additional, Maali, A., additional, De Simone, R., additional, Monsefi, N., additional, Ziaukas, V., additional, Erler, S., additional, Elfarra, H., additional, Perthel, M., additional, Hemmer, W., additional, Ghaffari, N., additional, Sandhaus, T., additional, Busk, H., additional, Schmitto, J., additional, Bärsch, V., additional, Easo, J., additional, Treede, H., additional, Albert, M., additional, Nägele, H., additional, Zenker, D., additional, Hegazy, Y., additional, Ahmadi, D., additional, Ehrlich, W., additional, Knaut, M., additional, Reichenspurner, H., additional, Butter, C., additional, and Hakmi, S., additional
- Published
- 2019
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18. Die „Opferelektrode“
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Ghaffari, N., primary, Arslan, I., additional, Stahlhut, P., additional, Mehlhorn, U., additional, and Conzelmann, L. O., additional
- Published
- 2018
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19. Functional RNAs in Stallion Sperm: Potential Indicators of Sperm Quality and Contributors to Fertility
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Ing, N.H., primary, Konganti, K., additional, Ghaffari, N., additional, Johnson, C.D., additional, Forrest, D.W., additional, Love, C.C., additional, and Varner, D.D., additional
- Published
- 2018
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20. Eight Leads at One Stroke: Lead Extraction with the Excimer Laser
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Ghaffari, N., additional, Gerhardus, J., additional, Conzelmann, L., additional, and Mehlhorn, U., additional
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- 2017
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21. The Multidisciplinary Approach to the Care of the Obese Parturient
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Ghaffari, N., primary, Srinivas, S.K., additional, and Durnwald, C.P., additional
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- 2016
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22. Sequencing of RNA from stallion sperm identifies potential markers of fertility
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Ing, N.H., primary, Konganti, K., additional, Ghaffari, N., additional, Johnson, C.D., additional, Forrest, D.W., additional, Love, C.C., additional, and Varner, D.D., additional
- Published
- 2016
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23. Excimer Laser-Assisted Lead Extraction in 88 High-Risk Patients: A Single-Center Experience
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Ghaffari, N., primary, Conzelmann, L., additional, Braun, I., additional, Gerhardus, J., additional, and Mehlhorn, U., additional
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- 2016
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24. Identifying the most significant genes from gene expression profiles for sample classification.
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Al-Mubaid, H. and Ghaffari, N.
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- 2006
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25. The Relationship Between Transcript Expression Levels of Nuclear Encoded (TFAM, NRF1) and Mitochondrial Encoded (MT-CO1) Genes in Single Human Oocytes During Oocyte Maturation
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Ghaffari Novin M., Allahveisi Azra, Noruzinia M., Farhadifar F., Yousefian E., Dehghani Fard A., and Salimi M.
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mitochondria ,oocyte maturation ,quantitative real-time polymerase chain reaction (qrt-pcr) ,single-cell ,Genetics ,QH426-470 - Abstract
In some cases of infertility in women, human oocytes fail to mature when they reach the metaphase II (MII) stage. Mitochondria plays an important role in oocyte maturation. A large number of mitochondrial DNA (mtDNA), copied in oocytes, is essential for providing adenosine triphosphate (ATP) during oocyte maturation. The purpose of this study was to identify the relationship between transcript expression levels of the mitochondrial encoded gene (MT-CO1) and two nuclear encoded genes, nuclear respiratory factor 1 (NRF1) and mitochondrial transcription factor A (TFAM) in various stages of human oocyte maturation. Nine consenting patients, age 21-35 years old, with male factors were selected for ovarian stimulation and intracytoplasmic sperm injection (ICSI) procedures. mRNA levels of mitochondrial- related genes were performed by singlecell TaqMan® quantitative real-time polymerase chain reaction (qRT-PCR). There was no significant relationship between the relative expression levels in germinal vesicle (GV) stage oocytes (p = 0.62). On the contrary, a significant relationship was seen between the relative expression levels of TFAM and NRF1 and the MT-CO1 genes at the stages of metaphase I (MI) and MII (p = 0.03 and p = 0.002). A relationship exists between the transcript expression levels of TFAM and NRF1, and MT-CO1 genes in various stages of human oocyte maturation.
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- 2015
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26. Antipsychotics leading to neuroleptic malignant syndrome in pregnancy.
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Ghaffari N, Dossett E, Lee RH, Aghajanian P, Ghaffari, Neda, Dossett, Emily, Lee, Richard H, and Aghajanian, Paola
- Abstract
Background: Neuroleptic malignant syndrome (NMS) is characterized by a tetrad of mental status changes, extrapyramidal symptoms, hyperpyrexia, and autonomic instability and can develop after the use of antipsychotics.Case: A young, multiparous woman presented at 26 weeks of gestation with acute psychosis and was treated with haloperidol until she developed rigidity of her extremities and then was switched to risperidone. She subsequently developed mental status changes, rigidity, hyperthermia, and autonomic instability, leading to a diagnosis of NMS. Risperidone was discontinued and, owing to ongoing psychosis, olanzapine was initiated. Subsequently, her symptoms resolved.Conclusion: Neuroleptic malignant syndrome may complicate the treatment of pregnant women using antipsychotics. Clinicians should take into account the risks of untreated psychosis when discontinuing the offending agent and consider initiating alternative pharmacotherapy. [ABSTRACT FROM AUTHOR]- Published
- 2012
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27. A CoD based reduction algorithm for Boolean and probabilistic Boolean networks.
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Ghaffari, N., Ivanov, I., and Dougherty, E.
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- 2009
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28. Reduction mappings and control policies for intervention in Boolean Networks.
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Ghaffari, N., Ivanov, I., and Dougherty, E.
- Published
- 2008
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29. Biomarker discovery across annotated and unannotated microarray datasets using semi-supervised learning
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Ghaffari Noushin and Harris Cole
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Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract The growing body of DNA microarray data has the potential to advance our understanding of the molecular basis of disease. However annotating microarray datasets with clinically useful information is not always possible, as this often requires access to detailed patient records. In this study we introduce GLAD, a new Semi-Supervised Learning (SSL) method for combining independent annotated datasets and unannotated datasets with the aim of identifying more robust sample classifiers. In our method, independent models are developed using subsets of genes for the annotated and unannotated datasets. These models are evaluated according to a scoring function that incorporates terms for classification accuracy on annotated data, and relative cluster separation in unannotated data. Improved models are iteratively generated using a genetic algorithm feature selection technique. Our results show that the addition of unannotated data into training, significantly improves classifier robustness.
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- 2008
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30. Whole-Genome sequencing and genetic variant analysis of a quarter Horse mare
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Doan Ryan, Cohen Noah D, Sawyer Jason, Ghaffari Noushin, Johnson Charlie D, and Dindot Scott V
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Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background The catalog of genetic variants in the horse genome originates from a few select animals, the majority originating from the Thoroughbred mare used for the equine genome sequencing project. The purpose of this study was to identify genetic variants, including single nucleotide polymorphisms (SNPs), insertion/deletion polymorphisms (INDELs), and copy number variants (CNVs) in the genome of an individual Quarter Horse mare sequenced by next-generation sequencing. Results Using massively parallel paired-end sequencing, we generated 59.6 Gb of DNA sequence from a Quarter Horse mare resulting in an average of 24.7X sequence coverage. Reads were mapped to approximately 97% of the reference Thoroughbred genome. Unmapped reads were de novo assembled resulting in 19.1 Mb of new genomic sequence in the horse. Using a stringent filtering method, we identified 3.1 million SNPs, 193 thousand INDELs, and 282 CNVs. Genetic variants were annotated to determine their impact on gene structure and function. Additionally, we genotyped this Quarter Horse for mutations of known diseases and for variants associated with particular traits. Functional clustering analysis of genetic variants revealed that most of the genetic variation in the horse's genome was enriched in sensory perception, signal transduction, and immunity and defense pathways. Conclusions This is the first sequencing of a horse genome by next-generation sequencing and the first genomic sequence of an individual Quarter Horse mare. We have increased the catalog of genetic variants for use in equine genomics by the addition of novel SNPs, INDELs, and CNVs. The genetic variants described here will be a useful resource for future studies of genetic variation regulating performance traits and diseases in equids.
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- 2012
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31. Acellular spinal cord scaffold containing quercetin-encapsulated nanoparticles plays an anti-inflammatory role in functional recovery from spinal cord injury in rats.
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Ebrahimi B, Mokhtari T, Ghaffari N, Adabi M, and Hassanzadeh G
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- Animals, Rats, Tissue Scaffolds, Rats, Sprague-Dawley, Serum Albumin, Bovine administration & dosage, Male, Spinal Cord Injuries drug therapy, Spinal Cord Injuries therapy, Quercetin pharmacology, Quercetin administration & dosage, Nanoparticles administration & dosage, Recovery of Function drug effects, Anti-Inflammatory Agents pharmacology, Anti-Inflammatory Agents administration & dosage, Spinal Cord drug effects, Spinal Cord metabolism
- Abstract
Inflammatory responses play a crucial role in the pathophysiology of spinal cord injury (SCI) and developing new approaches to establish an anti-inflammatory environment for the promotion of neuroregeneration holds promise as a potential approach. In this study, our aim was to investigate the potential of combining an acellular spinal cord scaffold (ASCS) with quercetin-loaded bovine serum albumin (Qu/BSA) nanoparticles (NPs) for the treatment of SCI. The ASCS was prepared using physical and chemical methods, while the Qu/BSA NPs were prepared through a desolvation technique. The NPs exhibited favorable characteristics, including a mean size of 203 nm, a zeta potential of -38, and an encapsulation efficiency of 96%. Microscopic evaluation confirmed the successful distribution of NPs on the walls of ASCS. Animal studies revealed that Qu/BSA NPs group exhibited a significant decrease in NLRP3, ASC, and Casp1 gene expression compared to the SCI group (p < 0.0001). The findings indicated a significant decrease in the NLRP3, ASC, and Casp1 protein level between the Qu/BSA/ASCS group and the SCI group (p < 0.0001). Moreover, treatment with ASCS containing either blank BSA (B/BSA) NPs or Qu/BSA NPs effectively promoted functional recovery via increasing the amount of nestin- and glial fibrillary acidic protein (GFAP)-positive cells in the site of injury. Notably, Qu/BSA/ASCS exhibited superior outcomes compared to B/BSA/ASCS. Overall, the combination of ASCS with the Qu delivery system presents a promising therapeutic approach for SCI by inhibiting inflammatory responses and promoting neuroregeneration, leading to the restoration of motor function in animals. This study demonstrates the potential of utilizing biomaterials and NPs to enhance the effectiveness of SCI treatment., (© 2024. The Author(s), under exclusive licence to Springer Nature Switzerland AG.)
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- 2024
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32. Neurological recovery and neurogenesis by curcumin sustained-release system cross-linked with an acellular spinal cord scaffold in rat spinal cord injury: Targeting NLRP3 inflammasome pathway.
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Ghaffari N, Mokhtari T, Adabi M, Ebrahimi B, Kamali M, Gholaminejhad M, and Hassanzadeh G
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- Animals, Rats, Male, Nanoparticles chemistry, Delayed-Action Preparations pharmacology, Disease Models, Animal, Serum Albumin, Bovine chemistry, Spinal Cord Injuries drug therapy, Spinal Cord Injuries therapy, Curcumin pharmacology, NLR Family, Pyrin Domain-Containing 3 Protein metabolism, Neurogenesis drug effects, Inflammasomes metabolism, Inflammasomes drug effects, Recovery of Function drug effects, Tissue Scaffolds chemistry, Rats, Sprague-Dawley, Spinal Cord drug effects, Spinal Cord metabolism
- Abstract
In the context of treating spinal cord injury (SCI), the modulation of inflammatory responses, and the creation of a suitable region for tissue regeneration may present a promising approach. This study aimed to evaluate the effects of curcumin (Cur)-loaded bovine serum albumin nanoparticles (Cur-BSA NPs) cross-linked with an acellular spinal cord scaffold (ASCS) on the functional recovery in a rat model of SCI. We developed an ASCS using chemical and physical methods. Cur-BSA, and blank (B-BSA) NPs were fabricated and cross-linked with ASCS via EDC-NHS, resulting in the production of Cur-ASCS and B-ASCS. We assessed the properties of scaffolds and NPs as well as their cross-links. Finally, using a male rat hemisection model of SCI, we investigated the consequences of the resulting scaffolds. The inflammatory markers, neuroregeneration, and functional recovery were evaluated. Our results showed that Cur was efficiently entrapped at the rate of 42% ± 1.3 in the NPs. Compared to B-ASCS, Cur-ASCS showed greater effectiveness in the promotion of motor recovery. The implantation of both scaffolds could increase the migration of neural stem cells (Nestin- and GFAP-positive cells) following SCI with the superiority of Cur-ASCS. Cur-ASCS was successful to regulate the gene expression and protein levels of NLRP3, ASC, and Casp1in the spinal cord lesion. Our results indicate that using ASCS can lead to the entrance of cells into the scaffold and promote neurogenesis. However, Cur-ASCS had greater effects in terms of inflammation relief and enhanced neurogenesis., (© 2024 John Wiley & Sons Ltd.)
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- 2024
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33. Speeding genomic island discovery through systematic design of reference database composition.
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Yu SL, Mageeney CM, Shormin F, Ghaffari N, and Williams KP
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- Genomics, Bacteria genetics, Prokaryotic Cells, Prophages genetics, Genomic Islands, Genome, Bacterial
- Abstract
Background: Genomic islands (GIs) are mobile genetic elements that integrate site-specifically into bacterial chromosomes, bearing genes that affect phenotypes such as pathogenicity and metabolism. GIs typically occur sporadically among related bacterial strains, enabling comparative genomic approaches to GI identification. For a candidate GI in a query genome, the number of reference genomes with a precise deletion of the GI serves as a support value for the GI. Our comparative software for GI identification was slowed by our original use of large reference genome databases (DBs). Here we explore smaller species-focused DBs., Results: With increasing DB size, recovery of our reliable prophage GI calls reached a plateau, while recovery of less reliable GI calls (FPs) increased rapidly as DB sizes exceeded ~500 genomes; i.e., overlarge DBs can increase FP rates. Paradoxically, relative to prophages, FPs were both more frequently supported only by genomes outside the species and more frequently supported only by genomes inside the species; this may be due to their generally lower support values. Setting a DB size limit for our SMAll Ranked Tailored (SMART) DB design speeded runtime ~65-fold. Strictly intra-species DBs would tend to lower yields of prophages for small species (with few genomes available); simulations with large species showed that this could be partially overcome by reaching outside the species to closely related taxa, without an FP burden. Employing such taxonomic outreach in DB design generated redundancy in the DB set; as few as 2984 DBs were needed to cover all 47894 prokaryotic species., Conclusions: Runtime decreased dramatically with SMART DB design, with only minor losses of prophages. We also describe potential utility in other comparative genomics projects., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Yu et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2024
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34. Promising Safety Profile of Noninsulin Medications for Type 2 Diabetes in Early Pregnancy.
- Author
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Ghaffari N
- Subjects
- Pregnancy, Female, Humans, Hypoglycemic Agents adverse effects, Diabetes Mellitus, Type 2 drug therapy
- Published
- 2024
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35. Differential Expression of Circadian Clock Genes in the Bovine Neuroendocrine Adrenal System.
- Author
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Earnhardt-San AL, Baker EC, Riley DG, Ghaffari N, Long CR, Cardoso RC, Randel RD, and Welsh TH Jr
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- Female, Cattle genetics, Animals, Period Circadian Proteins, Circadian Rhythm genetics, Hypothalamus, Adrenal Glands, Circadian Clocks genetics
- Abstract
Knowledge of circadian rhythm clock gene expression outside the suprachiasmatic nucleus is increasing. The purpose of this study was to determine whether expression of circadian clock genes differed within or among the bovine stress axis tissues (e.g., amygdala, hypothalamus, pituitary, adrenal cortex, and adrenal medulla). Tissues were obtained at an abattoir from eight mature nonpregnant Brahman cows that had been maintained in the same pasture and nutritional conditions. Sample tissues were stored in RNase-free sterile cryovials at -80 °C until the total RNA was extracted, quantified, assessed, and sequenced (NovaSeq 6000 system; paired-end 150 bp cycles). The trimmed reads were then mapped to a Bos taurus ( B. taurus ) reference genome (Umd3.1). Further analysis used the edgeR package. Raw gene count tables were read into RStudio, and low-expression genes were filtered out using the criteria of three minimum reads per gene in at least five samples. Normalization factors were then calculated using the trimmed mean of M values method to produce normalized gene counts within each sample tissue. The normalized gene counts important for a circadian rhythm were analyzed within and between each tissue of the stress axis using the GLM and CORR procedures of the Statistical Analysis System (SAS). The relative expression profiles of circadian clock genes differed ( p < 0.01) within each tissue, with neuronal PAS domain protein 2 ( NPAS2 ) having greater expression in the amygdala ( p < 0.01) and period circadian regulator ( PER1 ) having greater expression in all other tissues ( p < 0.01). The expression among tissues also differed ( p < 0.01) for individual circadian clock genes, with circadian locomotor output cycles protein kaput ( CLOCK ) expression being greater within the adrenal tissues and nuclear receptor subfamily 1 group D member 1 ( NR1D1 ) expression being greater within the other tissues ( p < 0.01). Overall, the results indicate that within each tissue, the various circadian clock genes were differentially expressed, in addition to being differentially expressed among the stress tissues of mature Brahman cows. Future use of these findings may assist in improving livestock husbandry and welfare by understanding interactions of the environment, stress responsiveness, and peripheral circadian rhythms.
- Published
- 2023
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36. Procedural outcome & risk prediction in young patients undergoing transvenous lead extraction-a GALLERY subgroup analysis.
- Author
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Rexha E, Chung DU, Burger H, Ghaffari N, Madej T, Ziaukas V, Hassan K, Reichenspurner H, Gessler N, Willems S, Butter C, Pecha S, and Hakmi S
- Abstract
Background: The prevalence of young patients with cardiac implantable electronic devices (CIED) is steadily increasing, accompanied by a rise in the occurrence of complications related to CIEDs. Consequently, transvenous lead extraction (TLE) has become a crucial treatment approach for such individuals., Objective: The purpose of this study was to examine the characteristics and procedural outcomes of young patients who undergo TLE, with a specific focus on identifying independent risk factors associated with adverse events., Methods: All patients in the GALLERY (GermAn Laser Lead Extraction RegistrY) were categorized into two groups based on their age at the time of enrollment: 45 years or younger, and over 45 years. A subgroup analysis was conducted specifically for the younger population. In this analysis, predictor variables for all-cause mortality, procedural complications, and procedural failure were evaluated using multivariable analyses., Results: We identified 160 patients aged 45 years or younger with a mean age of 35.3 ± 7.6 years and 42.5% ( n = 68) female patients. Leading extraction indication was lead dysfunction in 51.3% of cases, followed by local infections in 20.6% and systemic infections in 16.9%. The most common device to be extracted were implantable cardioverter-defibrillators (ICD) with 52.5%. Mean number of leads per patient was 2.2 ± 1.0. Median age of the oldest indwelling lead was 91.5 [54.75-137.5] months. Overall complication rate was 3.8% with 1.9% minor and 1.9% major complications. Complete procedural success was achieved in 90.6% of cases. Clinical procedural success rate was 98.1%. Procedure-related mortality was 0.0%. The all-cause in-hospital mortality rate was 2.5%, with septic shock identified as the primary cause of mortality. Multivariable analysis revealed CKD (OR: 19.0; 95% CI: 1.84-194.9; p = 0.018) and systemic infection (OR: 12.7; 95% CI: 1.14-142.8; p = 0.039) as independent predictor for all-cause mortality. Lead age ≥ 10 years (OR: 14.58, 95% CI: 1.36-156.2; p = 0.027) was identified as sole independent risk factor for procedural complication., Conclusion: TLE in young patients is safe and effective with a procedure-related mortality rate of 0.0%. CKD and systemic infection are predictors for all-cause mortality, whereas lead age ≥ 10 years was identified as independent risk factor for procedural complications in young patients undergoing TLE., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (© 2023 Rexha, Chung, Burger, Ghaffari, Madej, Ziaukas, Hassan, Reichenspurner, Gessler, Willems, Butter, Pecha and Hakmi.)
- Published
- 2023
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37. Laser lead extraction in octo- and nonagenarians. A subgroup analysis from the GALLERY registry.
- Author
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Pecha S, Chung DU, Burger H, Osswald B, Ghaffari N, Knaut M, Reichenspurner H, Willems S, Butter C, and Hakmi S
- Subjects
- Aged, 80 and over, Humans, Lasers, Nonagenarians, Registries, Treatment Outcome, Octogenarians, Defibrillators, Implantable, Device Removal adverse effects
- Abstract
Introduction: In an aging population with cardiac implantable electronic devices, an increasing number of octo- and even nonagenarians present for lead extraction procedures. Those patients are considered at increased risk for surgical procedures including lead extraction. Here, we investigated safety and efficacy of transvenous lead extraction in a large patient cohort of octo- and nonagenarians., Methods and Results: A subgroup analysis of all patients aged ≥80 years (n = 499) in the German Laser Lead Extraction Registry (GALLERY) was performed. Outcomes were compared to the nonoctogenarians from the registry. Primary extraction method was Laser lead extraction, with additional use of mechanical rotational sheaths or femoral snares, if necessary. An analysis of patient- and device characteristics, as well as an assessment of predictors for adverse events via multivariate analyses was conducted. Mean patients age was 84.3 ± 3.7 years in the octogenarians group and 64.1 ± 12.4 years in the nonoctogenarians group. The median lead dwell time was 118.0 months (78; 167) and 92.0 months [60; 133], p < .001 in the octogenarians and nonoctogenarians group, respectively. Clinical procedural success rate was achieved in 97.6% of the cases in octogenarians and 97.9% in nonoctogenarians (p = .70). Overall complication rate was 4.4% in octogenarians and 4.3% in nonoctogenarians (0.91). In octogenarians procedure-related mortality was 0.8% and all-cause in-hospital mortality was 5.4%, while in nonoctogenarians, procedure related and all-cause in-hospital mortality were 0.5% and 3.1%, respectively. A body mass index (BMI) <20 kg/m
2 , was the only statistically significant predictor for procedure-related complications in octogenarians, while systemic infection, BMI ≤20 kg/m2 , procedural complications and chronic kidney disease were predictors for in-hospital mortality., Conclusions: Laser lead extraction in octo- and nonagenarians is safe and effective. BMI ≤20 kg/m2 was the only statistically significant predictor for procedural complications. According to our data, advanced age should not be considered as contraindication for laser lead extraction., (© 2023 The Authors. Journal of Cardiovascular Electrophysiology published by Wiley Periodicals LLC.)- Published
- 2023
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38. Raman spectroscopy provides valuable process insights for cell-derived and cellular products.
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Matuszczyk JC, Zijlstra G, Ede D, Ghaffari N, Yuh J, and Brivio V
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- Spectrum Analysis, Raman methods, Biological Products analysis
- Abstract
Two of the big challenges in modern bioprocesses are process economics and in-depth process understanding. Getting access to online process data helps to understand process dynamics and monitor critical process parameters (CPPs). This is an important part of the quality-by- design concept that was introduced to the pharmaceutical industry in the last decade. Raman spectroscopy has proven to be a versatile tool to allow noninvasive measurements and access to a broad spectrum of analytes. This information can then be used for enhanced process control strategies. This review article will focus on the latest applications of Raman spectroscopy in established protein production bioprocesses as well as show its potential for virus, cell therapy, and mRNA processes., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this article., (Copyright © 2023 Sartorius Stedim Biotech GmbH. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2023
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39. Inter-Individual Variation in DNA Methylation Patterns across Two Tissues and Leukocytes in Mature Brahman Cattle.
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Baker EC, San AE, Cilkiz KZ, Littlejohn BP, Cardoso RC, Ghaffari N, Long CR, Riggs PK, Randel RD, Welsh TH Jr, and Riley DG
- Abstract
Quantifying the natural inter-individual variation in DNA methylation patterns is important for identifying its contribution to phenotypic variation, but also for understanding how the environment affects variability, and for incorporation into statistical analyses. The inter-individual variation in DNA methylation patterns in female cattle and the effect that a prenatal stressor has on such variability have yet to be quantified. Thus, the objective of this study was to utilize methylation data from mature Brahman females to quantify the inter-individual variation in DNA methylation. Pregnant Brahman cows were transported for 2 h durations at days 60 ± 5; 80 ± 5; 100 ± 5; 120 ± 5; and 140 ± 5 of gestation. A non-transport group was maintained as a control. Leukocytes, amygdala, and anterior pituitary glands were harvested from eight cows born from the non-transport group (Control) and six from the transport group (PNS) at 5 years of age. The DNA harvested from the anterior pituitary contained the greatest variability in DNA methylation of cytosine-phosphate-guanine (mCpG) sites from both the PNS and Control groups, and the amygdala had the least. Numerous variable mCpG sites were associated with retrotransposable elements and highly repetitive regions of the genome. Some of the genomic features that had high variation in DNA methylation are involved in immune responses, signaling, responses to stimuli, and metabolic processes. The small overlap of highly variable CpG sites and features between tissues and leukocytes supports the role of variable DNA methylation in regulating tissue-specific gene expression. Many of the CpG sites that exhibited high variability in DNA methylation were common between the PNS and Control groups within a tissue, but there was little overlap in genomic features with high variability. The interaction between the prenatal environment and the genome could be responsible for the differences in location of the variable DNA methylation.
- Published
- 2023
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40. The GermAn Laser Lead Extraction RegistrY: GALLERY.
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Pecha S, Burger H, Chung DU, Möller V, Madej T, Maali A, Osswald B, De Simone R, Monsefi N, Ziaukas V, Erler S, Elfarra H, Perthel M, Wehbe MS, Ghaffari N, Sandhaus T, Busk H, Schmitto JD, Bärsch V, Easo J, Albert M, Treede H, Nägele H, Zenker D, Hegazy Y, Ahmadi D, Gessler N, Ehrlich W, Romano G, Knaut M, Reichenspurner H, Willems S, Butter C, and Hakmi S
- Subjects
- Aged, Child, Device Removal methods, Female, Humans, Lasers, Excimer, Postoperative Complications etiology, Registries, Retrospective Studies, Treatment Outcome, Defibrillators, Implantable adverse effects, Pacemaker, Artificial adverse effects, Renal Insufficiency, Chronic
- Abstract
Aims: The GermAn Laser Lead Extraction RegistrY: GALLERY is a retrospective, national multicentre registry, investigating the safety and efficacy of laser lead extraction procedures in Germany., Methods and Results: Twenty-four German centres that are performing laser lead extraction have participated in the registry. All patients, treated with a laser lead extraction procedure between January 2013 and March 2017, were consecutively enrolled. Safety and efficacy of laser lead extraction were investigated. A total number of 2524 consecutive patients with 6117 leads were included into the registry. 5499 leads with a median lead dwell time of 96 (62-141) months were treated. The mean number of treated leads per patient was 2.18 ± 1.02. The clinical procedural success rate was 97.86% and the complete lead removal was observed in 94.85%. Additional extraction tools were used in 6.65% of cases. The rate of procedural failure was 2.14% with lead age ≥10 years being its only predictor. The overall complication rate was 4.32%, including 2.06% major and 2.26% minor complications. Procedure-related mortality was 0.55%. Female sex and the presence of abandoned leads were predictors for procedure-related complications. The all-cause in-hospital mortality was 3.56% with systemic infection being the strongest predictor, followed by age ≥75 years and chronic kidney disease., Conclusion: In the GALLERY, a high success- and low procedure-related complication rates have been demonstrated. In multivariate analysis, female sex and the presence of abandoned leads were predictors for procedure-related complications, while the presence of systemic infection, age ≥75 years, and chronic kidney disease were independent predictors for all-cause mortality., Competing Interests: Conflict of interest: S.P. reports grants and personal fees from Philips/Spectranetics, Medtronic, and AtriCure. H.B. reports grants and personal fees from Philips/Spectranetics, Cook Medical, Zoll Medical, Braun Medical, Abbott, Sorin Group/LivaNova, Impulse Dynamics, Biotronik, and Medtronic. B.O. reports grants and personal fees from Philips/Spectranetics and Medtronic. H.E. reports personal fees from Philips/Spectranetics. N.G. reports grants and personal fees from Boston Scientific, Medtronic, and Bayer Vital. M.K. reports grants and personal fees from Philips/Spectranetics, Zoll Medical, Sorin Group/LivaNova, Medtronic, Boston Scientific, and CVRx. H.R. reports personal fees from Medtronic. S.W. reports grants and personal fees from Abbott, Boston Scientific, Medtronic, Boehringer Ingelheim, Bristol Myers Squibb, Bayer Vital, Acutus, and Daiichi Sankyo. S.H. reports grants and personal fees from Boston Scientific, Edwards Lifesciences, Medtronic, Meril, Philips/Spectranetics, and Zoll Medical. All other authors have no conflicts of interest., (© The Author(s) 2022. Published by Oxford University Press on behalf of the European Society of Cardiology. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
- Published
- 2022
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41. DNA methylation patterns and gene expression from amygdala tissue of mature Brahman cows exposed to prenatal stress.
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Baker EC, Earnhardt AL, Cilkiz KZ, Collins HC, Littlejohn BP, Cardoso RC, Ghaffari N, Long CR, Riggs PK, Randel RD, Welsh TH Jr, and Riley DG
- Abstract
Prenatal stress can alter postnatal performance and temperament of cattle. These phenotypic effects may result from changes in gene expression caused by stress-induced epigenetic alterations. Specifically, shifts in gene expression caused by DNA methylation within the brain's amygdala can result in altered behavior because it regulates fear, stress response and aggression in mammals Thus, the objective of this experiment was to identify DNA methylation and gene expression differences in the amygdala tissue of 5-year-old prenatally stressed (PNS) Brahman cows compared to control cows. Pregnant Brahman cows ( n = 48) were transported for 2-h periods at 60 ± 5, 80 ± 5, 100 ± 5, 120 ± 5, and 140 ± 5 days of gestation. A non-transported group ( n = 48) were controls (Control). Amygdala tissue was harvested from 6 PNS and 8 Control cows at 5 years of age. Overall methylation of gene body regions, promoter regions, and cytosine-phosphate-guanine (CpG) islands were compared between the two groups. In total, 202 genes, 134 promoter regions, and 133 CpG islands exhibited differential methylation (FDR ≤ 0.15). Following comparison of gene expression in the amygdala between the PNS and Control cows, 2 differentially expressed genes were identified (FDR ≤ 0.15). The minimal differences observed could be the result of natural changes of DNA methylation and gene expression as an animal ages, or because this degree of transportation stress was not severe enough to cause lasting effects on the offspring. A younger age may be a more appropriate time to assess methylation and gene expression differences produced by prenatal stress., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Baker, Earnhardt, Cilkiz, Collins, Littlejohn, Cardoso, Ghaffari, Long, Riggs, Randel, Welsh and Riley.)
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- 2022
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42. SMFM Fetal Anomalies Consult Series #4: Genitourinary anomalies.
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Norton ME, Cheng Y, Chetty S, Chyu JK, Connolly K, Ghaffari N, Hopkins LM, Jelin A, Mardy A, Osmundson SS, Sparks TN, Sperling J, Swanson K, Zuckerwise LC, and Kuller JA
- Subjects
- Adrenal Gland Neoplasms congenital, Diagnosis, Differential, Dilatation, Pathologic congenital, Dilatation, Pathologic diagnostic imaging, Female, Fetal Diseases genetics, Fetal Diseases therapy, Genetic Testing, Humans, Kidney Pelvis diagnostic imaging, Kidney Pelvis pathology, Male, Neuroblastoma congenital, Ovarian Cysts congenital, Ovarian Cysts diagnostic imaging, Pregnancy, Urinoma congenital, Urinoma diagnostic imaging, Urogenital Abnormalities genetics, Urogenital Abnormalities therapy, Adrenal Gland Neoplasms diagnostic imaging, Delivery, Obstetric, Fetal Diseases diagnostic imaging, Neuroblastoma diagnostic imaging, Ultrasonography, Prenatal, Urogenital Abnormalities diagnostic imaging
- Published
- 2021
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43. Ectopic ureterocele.
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Ghaffari N
- Subjects
- Diagnosis, Differential, Female, Fetoscopy, Humans, Pregnancy, Prognosis, Ultrasonography, Prenatal, Ureterocele congenital, Ureterocele therapy, Ureter abnormalities, Ureter diagnostic imaging, Ureterocele diagnostic imaging
- Published
- 2021
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44. Biomedical features of flaxseed against different pathologic situations: A narrative review.
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Ebrahimi B, Nazmara Z, Hassanzadeh N, Yarahmadi A, Ghaffari N, Hassani F, Liaghat A, Noori L, and Hassanzadeh G
- Abstract
Flaxseed is a plant that grows and is cultivated in more than 50 countries; the main flax producer countries are Canada, China, the United States, and India. The purpose of the present study was to overview the source, chemical compounds, and mechanisms of the therapeutic effects of this valuable plant. For writing this manuscript, we made a list of relevant keywords and phrases, and then we started searching for studies in PubMed, Scopus, and Web of Science databases. The main constituents of flaxseed include lipids, proteins, lignans, fibers, and minerals. Flaxseed is full of antioxidants such as tocopherols, betacarotene, cysteine, and methionine which result in a decrease in blood pressure, heart disease, hepatic and neurological disorders, and increased insulin sensitivity. Flaxseed is commonly used for its antidiabetic and anticancer activities and also it is beneficial for cardiovascular, gastrointestinal, hepatic, urological, and reproductive disorders, and because of these beneficial effects, it is recognized as a medical plant.
- Published
- 2021
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45. Serum zinc level and children`s asthma: A systematic and meta-analysis review article.
- Author
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Ghaffari J, Alizadeh-Navaei R, Dabaghzadeh A, and Ghaffari N
- Abstract
Background: Asthma is a chronic inflammatory respiratory disorder. Nutritional conditions affect allergic diseases such as asthma. The aim of this study was to review the serum zinc level in children with asthma., Methods: This is a review article found in databases such as Google, PubMed, SID, Irandoc, Scopus and up-to-date. Key words for search included zinc, asthma, children and pediatric. There was no time limitation for the search. These articles on zinc levels in asthmatic children were meta-analyzed., Results: Out of the 40 articles, 19 articles were excluded and 21 articles were included in this analysis. 15 articles evaluated serum zinc levels, 4 articles on hair zinc levels, one article evaluated nail zinc levels and another on zinc level in erythrocyte cells in children with asthma. Only 3 articles evaluated effects of zinc supplement treatment in children with asthma. Meta-analysis of studies showed that there was no significant difference between the standard mean differences of zinc level in asthmatic patients compared to the control group. We cannot analyze the association between zinc levels in hair and nail in children with asthma. All clinical trial studies show that zinc supplement improves clinical manifestations of asthma and patient's pulmonary function test., Conclusion: We found that the mean serum zinc level difference is not significant in children with asthma than healthy control group and it seems that there is no relation between mean serum zinc level and severity of asthma in children., (Copyright © 2020, Babol University of Medical Sciences.)
- Published
- 2021
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46. The Use of Sequential Integrated Screening to Stratify Risk in Monochorionic-Diamniotic Twin Pregnancies.
- Author
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Miller E, Blat C, Gosnell K, Gonzalez J, and Ghaffari N
- Subjects
- Adult, Female, Fetofetal Transfusion etiology, Humans, Nuchal Translucency Measurement, Pregnancy, Pregnancy Trimester, First, Pregnancy Trimester, Second, Prenatal Diagnosis, Retrospective Studies, San Francisco epidemiology, Young Adult, Fetofetal Transfusion diagnostic imaging, Fetofetal Transfusion epidemiology, Placenta, Twins, Ultrasonography, Prenatal
- Abstract
Objective: This study aimed to identify differences in sequential integrated screening and early ultrasound markers in monochorionic/diamniotic (MC/DA) pregnancies complicated by twin-to-twin transfusion syndrome (TTTS) and unequal placental sharing (UPS)., Study Design: Retrospective cohort study of MC/DA pregnancies evaluated between January 2012 and July 2017 at the University of California San Francisco. MC/DA pregnancies with ultrasound surveillance up to 26 weeks who participated in the California Prenatal Screening Program (CPSP) were included. Pregnancies with structural or genetic anomalies were excluded. UPS was defined as an intertwin growth discordance ≥20%. Intertwin nuchal translucency (NT) discordance was calculated by the absolute value of the difference of the NT of cotwins. Kruskal-Wallis or ANOVA testing was performed where appropriate, and negative binomial regression models were chosen to test for differences in mean biomarker levels by outcome group., Results: A total of 191 MC/DA pregnancies were included; 85 were affected by TTTS, 35 by UPS, and 71 controls. Significant differences in intertwin NT discordance in pregnancies complicated by TTTS and UPS compared with controls ( p = 0.007) were found. TTTS cases had a mean NT discordance greater than two times that of controls ( p = 0.04), while UPS cases had a value more than three times greater ( p = 0.003). There was a statistically significant difference in mean second trimester human chorionic gonadotropin (hCG) between the cohorts ( p = 0.0002) with TTTS cases having a mean second trimester hCG value 1.5 greater than both controls ( p < 0.001) and UPS cases ( p = 0.001). Analysis showed a significant difference in mean second trimester inhibin between the three cohorts ( p = 0.029). Pregnancies complicated by UPS had a mean second trimester inhibin 1.5 times greater than controls ( p = 0.010)., Conclusion: Our study shows that there are unique differences in early ultrasound and sequential integrated serum markers between MC/DA gestations complicated by TTTS and UPS versus those unaffected., Key Points: · Differences exist in sequential integrated screening markers in monochorionic-diamniotic twin pregnancies.. · Early risk stratification of monochorionic-diamniotic twin pregnancies may be possible.. · Sequential integrated screening testing can provide useful information to clinicians when evaluating monochorionic-diamnitoic twin pregnancies.., Competing Interests: None declared., (Thieme. All rights reserved.)
- Published
- 2021
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47. Raw pacific biosciences and illumina sequencing reads and assembled genome data for the cattle ticks Rhipicephalus microplus and Rhipicephalus annulatus .
- Author
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Guerrero FD, Ghaffari N, Bendele KG, Metz RP, Dickens CM, Blood PD, Tidwell J, Miller RJ, de León AAP, Teel PD, and Johnson CD
- Abstract
Ticks from the genus Rhipicephalus have enormous global economic impact as ectoparasites of cattle. Rhipicephalus microplus and Rhipicephalus annulatus are known to harbor infectious pathogens such as Babesia bovis, Babesia bigemina , and Anaplasma marginale . Having reference quality genomes of these ticks would advance research to identify druggable targets for chemical entities with acaricidal activity and refine anti-tick vaccine approaches. We sequenced and assembled the genomes of R. microplus and R. annulatus , using Pacific Biosciences and HiSeq 4000 technologies on very high molecular weight genomic DNA. We used 22 and 29 SMRT cells on the Pacific Biosciences Sequel for R. microplus and R. annulatus , respectively, and 3 lanes of the Illumina HiSeq 4000 platform for each tick. The PacBio sequence yields for R. microplus and R. annulatus were 21.0 and 27.9 million subreads, respectively, which were assembled with Canu v. 1.7. The final Canu assemblies consisted of 92,167 and 57,796 contigs with an average contig length of 39,249 and 69,055 bp for R. microplus and R. annulatus , respectively. Annotated genome quality was assessed by BUSCO analysis to provide quantitative measures for each assembled genome. Over 82% and 92% of the 1066 member BUSCO gene set was found in the assembled genomes of R. microplus and R. annulatus , respectively. For R. microplus , only 189 of the 1066 BUSCO genes were missing and only 140 were present in a fragmented condition. For R. annulatus , only 75 of the BUSCO genes were missing and only 109 were present in a fragmented condition. The raw sequencing reads and the assembled contigs/scaffolds are archived at the National Center for Biotechnology Information., Competing Interests: This work was funded in parts by the USDA-ARS CRIS Project No. 3094-32000-036-00D, a USDA-ARS Cooperative Agreement No. 58-3094-6-017 with the Department of Entomology, Texas A&M AgriLife Research, College Station, TX, USA, and by Texas A&M AgriLife Research through an Insect Vector Diseases Competitive Grant and High Consequence Genomics Research Project on Vector-borne Diseases to the Department of Entomology. This work used the Extreme Science and Engineering Discovery Environment (XSEDE), which is supported by National Science Foundation grant number ACI-1548562. Specifically, it used the Bridges system, which is supported by NSF award number ACI-1445606, at the Pittsburgh Supercomputing Center (PSC).
- Published
- 2021
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48. Caution in Prescribing Modafinil and Armodafinil to Individuals Who Could Become Pregnant.
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Ghaffari N and Robertson PA
- Subjects
- Female, Humans, Modafinil pharmacology, Pregnancy, Wakefulness drug effects, Central Nervous System Stimulants adverse effects
- Published
- 2021
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49. Challenging the role of challenge in intensive short-term dynamic psychotherapy for social anxiety disorder: A randomized controlled trial.
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Rahmani F, Abbass A, Hemmati A, Ghaffari N, and Rezaei Mirghaed S
- Subjects
- Adolescent, Adult, Diagnostic and Statistical Manual of Mental Disorders, Female, Humans, Male, Treatment Outcome, Young Adult, Phobia, Social therapy, Psychotherapy, Brief methods
- Abstract
Objectives: Intensive short-term dynamic psychotherapy (ISTDP) requires the technique of challenge to defenses when treating resistant patients. As the technique of challenge is difficult for some therapists to practice, it leads us to question whether challenge can be replaced by clarification of defenses without losing treatment effectiveness. This study compared ISTDP with two different technical emphases while treating social anxiety disorder (SAD)., Method: Forty-two subjects with DSM-5 SAD were randomly assigned to either a waitlist control, 10 sessions of ISTDP with the use of challenge or 10 sessions of ISTDP without the use of challenge., Results: ISTDP led to significant, sustained symptom reduction on the Liebowitz Social Anxiety Scale (LSAS-SR) compared with the control group. There were no significant outcome differences between standard ISTDP and ISTDP where challenge was restricted., Conclusion: ISTDP is efficacious for SAD. ISTDP may be effective for SAD without the use of challenge elements., (© 2020 Wiley Periodicals LLC.)
- Published
- 2020
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50. COVID-19 and multiorgan failure: A narrative review on potential mechanisms.
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Mokhtari T, Hassani F, Ghaffari N, Ebrahimi B, Yarahmadi A, and Hassanzadeh G
- Subjects
- Angiotensin-Converting Enzyme 2, Betacoronavirus, COVID-19, Cytokine Release Syndrome pathology, Heart Diseases virology, Humans, Kidney pathology, Kidney Diseases virology, Liver pathology, Liver Diseases virology, Lung pathology, Multiple Organ Failure virology, Myocardium pathology, Pandemics, Peptidyl-Dipeptidase A metabolism, SARS-CoV-2, Coronavirus Infections pathology, Heart Diseases pathology, Kidney Diseases pathology, Liver Diseases pathology, Multiple Organ Failure pathology, Pneumonia, Viral pathology
- Abstract
The outbreak of severe acute respiratory syndrome coronavirus 2 (SARS-CoV2) in December 2019 form Wuhan, China leads to coronavirus disease 2019 (COVID-19) pandemic. While the common cold symptoms are observed in mild cases, COVID-19 is accompanied by multiorgan failure in severe patients. The involvement of different organs in severe patients results in lengthening the hospitalization duration and increasing the mortality rate. In this review, we aimed to investigate the involvement of different organs in COVID-19 patients, particularly in severe cases. Also, we tried to define the potential underlying mechanisms of SARS-CoV2 induced multiorgan failure. The multi-organ dysfunction is characterized by acute lung failure, acute liver failure, acute kidney injury, cardiovascular disease, and as well as a wide spectrum of hematological abnormalities and neurological disorders. The most important mechanisms are related to the direct and indirect pathogenic features of SARS-CoV2. Although the presence of angiotensin-converting enzyme 2, a receptor of SARS-CoV2 in the lung, heart, kidney, testis, liver, lymphocytes, and nervous system was confirmed, there are controversial findings to about the observation of SARS-CoV2 RNA in these organs. Moreover, the organ failure may be induced by the cytokine storm, a result of increased levels of inflammatory mediators, endothelial dysfunction, coagulation abnormalities, and infiltration of inflammatory cells into the organs. Therefore, further investigations are needed to detect the exact mechanisms of pathogenesis. Since the involvement of several organs in COVID-19 patients is important for clinicians, increasing their knowledge may help to improve the outcomes and decrease the rate of mortality and morbidity.
- Published
- 2020
- Full Text
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