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The aim of this study was to analyze the survival and growth of intergeneric (Acispenser ruthenus × Huso huso L.) sterbel hybrids obtained by fertilizing sterlet eggs with cryopreserved beluga semen. The rate of embryonic development did not differ between sterbel hybrids (experimental groups) and sterlets (control groups), and the hatching period was identical in all groups. The survival rate of hybrid larvae was higher in the experimental groups than in the control groups. Body weight and body length measurements revealed that sterbel hybrids grew at a faster rate than the control group sterlets. The hybrid origin of sterbels produced with the use of cryopreserved beluga semen was confirmed in a genetic analysis based on species-specific DNA fragments. To the best of the authors' knowledge, this is the first study to analyze the growth of sterbel hybrids derived from cryopreserved semen. The research findings indicate that this type of intergeneric hybridization delivers satisfactory results and can be applied in sturgeon aquaculture. [ABSTRACT FROM AUTHOR]

The citrus cultivar 'Local Juhong', which has historically been used as a traditional Chinese medicinal material, originated in Yuanjiang County, Hunan Province.Its parental type and genetic background are indistinct as of yet. Morphological observation shows that 'Local Juhong' has a slight oblateness in fruit shape, a relatively smooth pericarp, a fine and slightly raised oil vacuole, and an inward concave at the blossom end. The tree form and fruit and leaf morphology of 'Local Juhong' are similar to those of 'Huangpi' sour orange. To reveal the genetic background of 'Local Juhong', 21 citrus accessions were evaluated using nuclear and chloroplast SSR markers and whole-genome SNP information. 'Local Juhong' was grouped with mandarins and sub-grouped with 'Miyagawa Wase' and 'Yanxi Wanlu' in a nuclear SSR analysis, which indicated that its pollen parent might be mandarins. It was closely clustered with orange and pummelo in the chloroplast SSR analysis. The genomic sequence similarity rate of 'Local Juhong' with mandarin and pummelo heterozygosity was 70.88%; the main part was the heterozygosity, except for the unknown (19.66%), mandarin (8.73%), and pummelo (3.9%) parts. Thus, 'Local Juhong' may be an F1 hybrid with pummelo as the female parent and mandarin as the male parent, sharing sisterhood with 'Huangpi' sour orange. [ABSTRACT FROM AUTHOR]

Despite providing important ecosystem services, termites are also serious pests of wooden structures. Termites are highly adaptive organisms that cause concern as an invasive species. Predictions of the future spread of their distribution range due to factors such as climate change, urban growth, and global trade present new challenges to our capacity to protect our wood and wood-based materials and structures effectively. Reticulitermes grassei Clément, 1978 (Blattodea: Rhinotermitidae) is a subterranean termite native to the Iberian Peninsula and France, whose global distribution has widened over recent years. This article updates the distribution range of this species, confirming its identification in the Azores, Madeira, and Morocco through molecular analysis. The origin and consequences of these putative invasive populations are discussed in light of previously available data. The resulting network showed a highly structured base consisting of many haplotypes from the southern and southwestern Iberian Peninsula (Spain and Portugal), including those from Morocco (in natural landscapes) and Switzerland (in infrastructures). The more derived part of the network includes the haplotypes from southwest France, the northwest Iberian Peninsula, the United Kingdom, Azores, and Madeira, the last 3 being linked probably to human-mediated transportation events. The potential impacts of invasive subterranean termite populations expanding into new regions are concerning, especially in urban environments, and remain uncertain in natural areas. The challenges posed by these termites could be especially worrying in island ecosystems. Hence, it is crucial to implement early warning systems and monitoring programs in regions susceptible to subterranean termite invasions. [ABSTRACT FROM AUTHOR]

Interspecific hybridization has long been of interest to biologists due to its implications for species concepts, gene flow, and conservation. We found a putative hybrid between the endangered brown shrike (Lanius cristatus superciliosus) and the common bull-headed shrike (Lanius bucephalus) at the foot of Mt. Fuji, central Japan, where the adult sex ratio of brown shrikes is biased towards the male. Brown and bull-headed shrikes are closely related, and their hybridization is critical for the survival and conservation of the brown shrike. We tried to identify this individual based on genetic, morphological, plumage, and acoustic analysis. The hybrid had intermediate genetic, morphological, and plumage features between the two parental species. The maternal lineage of the hybrid was suggested to be the bull-headed shrike by COI analysis. We thus conclude that the hybrid resulted from interbreeding between a male brown shrike and a female bull-headed shrike, and a skewed sex ratio in the brown shrike may have contributed to this hybridization. Skewed sex ratio is a useful indicator of population viability and knowledge of this is helpful in rare species conservation. Genetic introgression between brown and bull-headed shrikes cannot be denied because the hybrid individual was fertile and backcrossing occurred. Exploring past and ongoing genetic relationships of the shrikes has led to insights into the evolutionary background and the potential of hybridization in an evolutionary context. [ABSTRACT FROM AUTHOR]

Context: Overfishing is a major cause of decline for many shark species globally, which can be largely offset by shifting consumer demand to sustainable harvests. The inherent difficulty identifying shark species after processing makes informative labelling fundamental to achieving a sustainable market. Aims: We evaluated the level of mislabelling in Australia from shark flesh samples obtained from seafood suppliers across the country. Methods: We used sequence data from the cytochrome oxidase subunit one gene (COI) and the 12S mitochondrial RNA gene (12S) to identify genera and likely species. Key results: We used genetic sequence data to identify species from tissue samples from 91 fillets labelled as shark. Of these, 64 (70%) were mislabelled, and 9 comprised three species listed as threatened in Australia, the scalloped hammerhead (Sphryna lewini), greeneye spurdog (Squalus chloroculus) and school shark (Galeorhinus galeus). The scalloped hammerhead and greeneye spurdog were being sold under the label 'flake'. Overall, 70% of samples were mislabelled and the proportion of mislabelling was significantly greater in takeaways compared with fish markets and wholesalers. Conclusions: High levels of mislabelling of shark product in Australian fish markets and seafood shops was apparent both with respect to the genetically identified shark sample not matching the label and the use of ambiguous labels that do not adhere to the Australian Fish Names Standard. Mislabelling masked the presence of threatened species. Implications: Our results reveal labelling practices that are not providing consumers with reliable information to identify shark products, and we demonstrate the utility of molecular methods in seafood trade monitoring. We collected raw shark fillets from fish markets and takeaway shops across Australia to identify species of shark being sold and the labels used. Our study shows a high level of mislabelling, including misuse of the label 'flake' under the Australian Fish Names Standard, and various threatened species being sold. This has implications for consumers and identifies a potential impact of the Australia seafood industry on threatened species. [ABSTRACT FROM AUTHOR]

The razor clam Sinonovacula constricta, is one of the most commercially important cultured bivalves in China and Southeast Asia, while S. rivularis is its closer relatives discovered more than a decade ago. In order to obtain offspring with faster growth rate and stronger salt tolerance of S. constricta and S. rivularis, interspecific hybrids were produced, and the hybridity of the interspecific hybrids was confirmed by microsatellite markers. Microsatellite markers exhibit a high potential for transfer through cross-amplification in related species, and the transferability of 48 pairs of microsatellite marker primers from S. constricta were assessed in S. rivularis. Here, 24 universal microsatellite markers were successfully amplified in S. rivularis, of which 18 were polymorphic with the allele number from 2 to 5. The genetic diversity of two razor clams evaluated by 18 polymorphic microsatellite markers indicated that two species were both above the middle level, with a relatively higher genetic diversity, while S. constricta showed higher genetic diversity than S. rivularis according to the genetic parameters of Na, Ho, He and PIC. Furthermore, a total of two speciesspecific microsatellite markers were screened, which could be used for quick genetic identification of S. constricta, S. rivularis and their hybrids. The results suggest the induced interspecific hybrids are true hybrids between S. constricta and S. rivularis, which provide a basis for breeding, subsequent protection, and germplasm resources utilization of the razor clams. [ABSTRACT FROM AUTHOR]

Simple Summary: Some species of Sarcocystis parasites form cysts in the brains of small mammals. These parasites have been shown in laboratory experiments to be transmitted by Buteo buzzards. However, there is a lack of studies identifying these parasites in natural definitive hosts. In the current investigation, we examined brain tissues of small mammals and small intestines of two buzzard species collected in Lithuania for Sarcocystis spp. Species of Sarcocystis were confirmed using DNA sequence analysis. Of the eleven small mammal species inspected, only bank voles were infected with cysts of Sarcocystis glareoli. The prevalence of this parasite in the brain of vole hosts reached 9.1%. Based on genetic examination, half of the investigated common buzzards were positive for S. glareoli. Furthermore, two Sarcocystis species, including a putative new species, were detected in the small intestines of rough-legged buzzards. Our results indicate that Buteo buzzards play an important role in transmitting rarely studied Sarcocystis parasites forming cysts in the tissues of small mammals. Representatives of the genus Sarcocystis are worldwide distributed apicomplexan parasites characterised by two-host prey-predator relationships. Sarcocystis spp. produce sarcocysts in the muscles and brains of intermediate hosts and develop sporocysts in the intestines of definitive hosts. Two species, Sarcocystis glareoli and Sarcocystis microti, previously assigned to the genus Frenkelia, form cysts in the brains of rodents and are transmitted through the common buzzard (Buteo buteo). In our study, brain samples of 694 small mammals caught in different regions of Lithuania were examined for Sarcocystis spp. Additionally, 10 B. buteo and two rough-legged buzzards (Buteo lagopus) were tested for sporocysts of the analysed parasites. Sarcocystis species were identified based on 28S rRNA sequence comparison. Of the eleven species of small mammals tested, Sarcocystis parasites were observed only in the bank vole (Clethrionomys glareolus). Cysts of S. glareoli were detected in 34 out of 374 C. glareolus (9.1%, 95% CI = 6.4–12.5%). Molecular investigation showed the presence of only S. glareoli in the intestines of 50% of B. buteo. Furthermore, two species, Sarcocystis sp. Rod3 and Sarcocystis sp. Rod4, were confirmed in B. lagopus. Our results demonstrate the need for further studies on Sarcocystis cycling between rodents and birds. [ABSTRACT FROM AUTHOR]

The genus Sarcocystis is an abundant group of Apicomplexa parasites found in mammals, birds, and reptiles. These parasites are characterised by the formation of sarcocysts in the muscles of intermediate hosts and the development of sporocysts in the intestines of definitive hosts. The identification of Sarcocystis spp. is usually carried out in carcasses of animals, while there is a lack of studies on the detection of Sarcocystis species in blood samples. In the current study, blood samples of 214 yellow-necked mice (Apodemus flavicollis) and 143 bank voles (Clethrionomys glareolus) from Lithuania were examined for Sarcocystis. The molecular identification of Sarcocystis was carried out using nested PCR of cox1 and 28S rRNA and subsequent sequencing. Sarcocystis spp. were statistically (p < 0.01) more frequently detected in the bank vole (6.3%) than in yellow-necked mice (0.9%). The analysed parasites were observed in four different habitats, such as mature deciduous forest, bog, natural meadow, and arable land. Three species, Sarcocystis funereus, Sarcocystis myodes, and Sarcocystis cf. glareoli were confirmed in the bank vole, whereas only Sarcocystis myodes were found in yellow-necked mice. The obtained results are important in the development of molecular identification of Sarcocystis parasites in live animals. [ABSTRACT FROM AUTHOR]

To explore the grapevine biodiversity of some minor viticultural districts located in the northwest coastal area of Tuscany, a total of 99 grapevine samples were collected from field borders or no longer cultivated areas and analysed at the molecular level using 12 microsatellite markers (SSR). The results revealed the presence of 58 unique genotypes among which 42 already known varieties (36 belonging to the Vitis vinifera species and 6 Vitis interspecific crosses) and 16 hitherto unreported genetic profiles. About 50 % of the accessions (52 out of 99) were vegetatively propagated and planted in a vineyard collection to protect them from extinction and to record their phenotypic characteristics. This research has highlighted the potential for using several grapevine cultivars that were probably once widespread and can henceforth be cultivated again to help revive the eco-wine tourism of the Tuscan heroic vineyards and add prestige to the local wine panorama.

June 21, 2023, marks the 75th anniversary of RAS Academician Nikolay Kazimirovich Yankovsky, an eminent specialist in the field of general and molecular genetics and biotechnology. Nikolay Kazimirovich has published more than 170 scientific papers, has nine patents, trained six Doctors and 19 Candidates of Science. He is a laureate of the USSR Council of Ministers Prize and several other awards. Nikolay Kazimirovich carries out extensive editorial work, being the Editor-in-Chief of the Journal “Genetics” and a member of editorial boards of a few other specialized periodicals. N.K. Yankovsky is also known as a major organizer in science; in 2006-2016 he held the position of Director of the Institute of General Genetics of the Russian Academy of Sciences, and currently he is the Scientific Director of this Institute. Nikolay Kazimirovich carries out extensive educational work, being the author of dozens of popular scientific publications and presentations in the mass media. It is impossible to overestimate the contribution of N.K. Yankovsky into the work of the Russian genetic community in the rank of the first Vice-President of the Vavilov Society of Geneticists and Breeders, in which position he has always been and still is a generator of new ideas and an active fighter for the ideals of genetic science. Friends and associates – Russian geneticists and breeders, congratulate Nikolay Kazimirovich on his anniversary and wish him achieving new creative successes, grateful apprentices, enthusiasm and inexhaustible energy in solving large-scale challenges of genetics on a national and global scales.

The rapid expansion of wild pigs (Sus scrofa) throughout the United States has been fueled by unlawful introductions, with invasive populations causing extensive crop losses, damaging native ecosystems, and serving as a reservoir for disease. Multiple states have passed laws prohibiting the possession or transport of wild pigs. However, genetic and phenotypic similarities between domestic pigs and invasive wild pigs—which overwhelmingly represent domestic pig and wild boar hybrids—pose a challenge for the enforcement of such regulations. We sought to exploit wild boar ancestry as a common attribute among the vast majority of invasive wild pigs as a means of genetically differentiating wild pigs from breeds of domestic pig found within the United States. We organized reference high‐density single nucleotide polymorphism genotypes (1039 samples from 33 domestic breeds and 382 samples from 16 wild boar populations) into five genetically cohesive reference groups: mixed‐commercial breeds, Durocs, heritage breeds, primitive breeds, and wild boar. Building upon well‐established genetic clustering approaches, we structured the test statistic to describe the difference in the likelihood of a given genotype's ancestry vectors (sensu genetic clustering analysis) if derived strictly from the four described domestic pig reference groups versus allowing for admixture from the wild boar group. By fitting statistical distributions to test statistics of reference domestic pigs, we characterized the distribution of the null hypothesis that a given genotype descends strictly from domestic pig reference groups. We tested the approach with simulated genotypes and empirical data from an additional 29 breeds of domestic pig represented by 435 unique genotypes; all associated test statistics for simulated and empirical domestic pig challenge sets fell within the distribution of reference domestic pigs. We then evaluated 6566 invasive wild pigs sampled across the contiguous United States, of which 63% exceeded the maximum threshold for domestic pigs and could be statistically classified as possessing wild boar ancestry. This approach provides a scientific foundation to enforce regulations prohibiting the possession of this destructive invasive species. Further, this computationally efficient and generalizable approach could be readily adapted to quantify gene flow among ecological systems of conservation or management concern. [ABSTRACT FROM AUTHOR]

In the current study, we assessed the genetic diversity of 20 individual plants representing three commercially bred hybrid willow clones, namely 'Tora', 'Tordis', and 'Loden'. The study was carried out in connection with the necessity of repeated clonal identification due to potential mismarking of the source plant material. We implemented sequence-related amplified polymorphism (SRAP) molecular markers, due to their simplicity, reliability, effectiveness, and genome-wide coverage. The analysis of the SRAP chromatograms revealed clear differentiation of the investigated samples into three groups, consisting of 11, 6, and 3 individual plants, respectively. Within the groups, the plant material was highly homogenous in terms of genetic variability. The proposed research scheme proved as a suitable approach for a larger-scale screening of the genetic diversity of available germplasm of Salix spp., thus showing potential for implementation of genome-based breeding strategies. [ABSTRACT FROM AUTHOR]

Rapid identification of organisms is essential for many biological and medical disciplines, from understanding basic ecosystem processes, disease diagnosis, to the detection of invasive pests. CRISPR‐based diagnostics offers a novel and rapid alternative to other identification methods and can revolutionize our ability to detect organisms with high accuracy. Here we describe a CRISPR‐based diagnostic developed with the universal cytochrome‐oxidase 1 gene (CO1). The CO1 gene is the most sequenced gene among Animalia, and therefore our approach can be adopted to detect nearly any animal. We tested the approach on three difficult‐to‐identify moth species (Keiferia lycopersicella, Phthorimaea absoluta and Scrobipalpa atriplicella) that are major invasive pests globally. We designed an assay that combines recombinase polymerase amplification (RPA) with CRISPR for signal generation. Our approach has a much higher sensitivity than real‐time PCR assays and achieved 100% accuracy for identification of all three species, with a detection limit of up to 120 fM for P. absoluta and 400 fM for the other two species. Our approach does not require a sophisticated laboratory, reduces the risk of cross‐contamination, and can be completed in less than 1 h. This work serves as a proof of concept that has the potential to revolutionize animal detection and monitoring. [ABSTRACT FROM AUTHOR]

The Assamese snake-head fish, Channa stewartii (Playfair, 1867) is endemic to the Brahmaputra River Basin (upper, middle, and lower) in India and Bangladesh, as well as the Ganges River basin extending from southern Nepal south-eastward. This study aimed to examine the taxonomic status and the length-weight relationship and condition factor of C. stewartii populations from a newly found community in Assam, Morigaon district, India. Taxonomic assessment involves morphological examination and comparison with existing literature to confirm the species identity. The morphological observation clearly indicated that C. stewartii specimens were distinguished by their blue fins with black patches, red fin edges, and reddish-pink pectoral fins. The female fishes have slightly duller, yellowish colours than the males, although they still have brighter colours than the males. Phylogenetic analyses also showed that our recent collection was clustered with C. stewartii from Assam, India. Measurements of C. stewartii length-weight relationship exhibited that both male (b = 3.389) and female (b = 3.396) showed a positive allometric growth. Additionally, the condition factor (K) for both sexes exceeded 1, indicating the well-being and health of the fish in their habitat. The findings contribute to the understanding of the ecological characteristics and population dynamics of C. stewartii in Morigaon district, providing valuable information's for fisheries management and conservation efforts in the region. [ABSTRACT FROM AUTHOR]

Despite being one of the most speciose fish families in the Mediterranean Sea, knowledge about the diversity of gobies (Actinopterygii: Gobiidae) in this sea is still unsatisfactory, as documented by recent descriptions of a number of new species. Although very common in shallow water, Gobius incognitus Kovačić & Šanda, 2016, had escaped attention until 2016, when it was discovered. Due to its overall superficial morphological similarity, G. incognitus used to be confused with a much rarer species, Gobius bucchichi Steindachner, 1870, which was considered one of the most common shallow-water gobies in the Mediterranean Sea. In this work, we tested the suitability of the genetic data (mitochondrial gene encoding cytochrome b) for identifying and distinguishing between these two goby species, and assessed the congruency between the distribution records based on genetic data and those based on morphological identification. We analysed material of 304 specimens of G. incognitus and G. bucchichi from 49 localities covering a considerable part of the Mediterranean Sea, Black Sea, and the Atlantic Ocean near Gibraltar, representing 19 geographically well-separated areas. We detected 270 sequences of G. incognitus, and only 34 of G. bucchichi. In both species, a high haplotype variability was observed. The sequence species identity matched morphological identification for all specimens for which vouchers were available. The mean uncorrected p-distance between G. incognitus and G. bucchichi was 13%, while the mean intraspecific distances were much lower (0.63% and 0.68%, respectively). We found 79 fixed mutations between these two species. Data on distribution based on genetic identification are completely congruent with published results based on morphological identification. The results of this study support molecular methods as a reliable tool for distinguishing morphologically similar fish species, which is particularly useful when only tissue is available for determination. [ABSTRACT FROM AUTHOR]

In North America, some moose populations are declining, and meningeal worm (Parelaphostrongylus tenuis) infections may be contributing. Moose are aberrant hosts for meningeal worm and develop severe pathology whereas white-tailed deer (WTD) are definitive hosts that experience minimal pathology and spread parasite larvae into the environment. Analyses of harvested WTD heads confirmed meningeal worm in Western Manitoba, Canada including in areas where moose have experienced population declines and are currently of management concern. The prevalence of larval meningeal worm from WTD feces in these areas are unknown, particularly because the dorsal-spined larvae (DSL) are morphologically indistinguishable from muscle worm (Parelaphostrongylus andersoni). To assess transmission risk of DSL, we investigated the spatial and temporal variation of prevalence in WTD feces from four areas (two with historical moose population declines and two without) sampled across two summers. We predicted higher prevalence of DSL in areas where moose are of management concern and surveys have shown higher meningeal worm prevalence in WTD heads. Further, we expected to only recover meningeal worm, as muscle worm has only been reported from caribou in more northern areas of Manitoba. We collected WTD feces by transect sampling, used the Baermann technique to obtain larvae, and sequenced partial cytochrome oxidase 1 and internal transcribed spacer 2 genes to confirm species identity. Zero-inflated models revealed that DSL prevalence did not differ temporally but was higher in areas where moose are of management concern. Genetic analyses revealed that meningeal worm and muscle worm were both present in Western Manitoba and co-occurred in three areas. Our results reveal novel insights into the geographic distribution of muscle worm and emphasize the importance of DNA sequencing for DSL identification. We suggest that concern for moose populations is warranted given the increased risk of parasite infection in some management areas.

We isolated a new orthonairovirus from Dermacentor silvarum ticks near the China–North Korea border. Phylogenetic analysis showed 71.9%–73.0% nucleic acid identity to the recently discovered Songling orthonairovirus, which causes febrile illness in humans. We recommend enhanced surveillance for infection by this new virus among humans and livestock.

Abstract The rapid expansion of wild pigs (Sus scrofa) throughout the United States has been fueled by unlawful introductions, with invasive populations causing extensive crop losses, damaging native ecosystems, and serving as a reservoir for disease. Multiple states have passed laws prohibiting the possession or transport of wild pigs. However, genetic and phenotypic similarities between domestic pigs and invasive wild pigs—which overwhelmingly represent domestic pig and wild boar hybrids—pose a challenge for the enforcement of such regulations. We sought to exploit wild boar ancestry as a common attribute among the vast majority of invasive wild pigs as a means of genetically differentiating wild pigs from breeds of domestic pig found within the United States. We organized reference high‐density single nucleotide polymorphism genotypes (1039 samples from 33 domestic breeds and 382 samples from 16 wild boar populations) into five genetically cohesive reference groups: mixed‐commercial breeds, Durocs, heritage breeds, primitive breeds, and wild boar. Building upon well‐established genetic clustering approaches, we structured the test statistic to describe the difference in the likelihood of a given genotype's ancestry vectors (sensu genetic clustering analysis) if derived strictly from the four described domestic pig reference groups versus allowing for admixture from the wild boar group. By fitting statistical distributions to test statistics of reference domestic pigs, we characterized the distribution of the null hypothesis that a given genotype descends strictly from domestic pig reference groups. We tested the approach with simulated genotypes and empirical data from an additional 29 breeds of domestic pig represented by 435 unique genotypes; all associated test statistics for simulated and empirical domestic pig challenge sets fell within the distribution of reference domestic pigs. We then evaluated 6566 invasive wild pigs sampled across the contiguous United States, of which 63% exceeded the maximum threshold for domestic pigs and could be statistically classified as possessing wild boar ancestry. This approach provides a scientific foundation to enforce regulations prohibiting the possession of this destructive invasive species. Further, this computationally efficient and generalizable approach could be readily adapted to quantify gene flow among ecological systems of conservation or management concern.

Through fingerprinting analysis using reference microsatellite markers and comparing with the Vitis International Variety Catalogue (VIVC) database, it was possible to discover that in Brazil, the wine grape variety cultivated for over 70 years, called 'Peverella' (Variety number VIVC = 12963; National Register of Vine Varieties (Italy), code: 254) is actually the grape variety called 'Boschera' (Variety number VIVC = 1576; National Register of Vine Varieties (Italy), code: 326). This discovery makes wines produced in Brazil even rarer (with only approximately 10 hectares planted worldwide), presenting an additional means to promote and market this historic variety. [ABSTRACT FROM AUTHOR]

This study provides the first baseline information on the trophic interactions of the endemic shark Cephalurus cephalus through a multidisciplinary approach analyzing its diet, parasite component community, parasite diversity, and infection rates. Preys and parasites of 132 sharks caught off Magdalena Bay, Mexico, during June and July 2015 were identified and assessed ecologically adding new information on the behavior and interspecies interaction of C. cephalus. Diet of C. cephalus neonates, juveniles, and adults differed significantly. Individuals specialize on different prey types preying mainly on bentho-pelagic crustaceans, though the most important prey item was Pleuroncodes planipes (IRI 82.5%). The parasite component community was made up of larval stages of the nematodes Raphidascarididae, Ascarophis, Contracaecum, Anisakis, and Heliconema and adults of Mooleptus rabuka. Nevertheless, the infection was impoverished and mild from neonates to adults. Genetic evidence revealed the first infection by Anisakis berlandi and A. brevispiculata in a shark host. The encapsulated third stage larvae, impoverished abundance, and infection values of anisakids suggest that C. cephalus functions as facultative paratenic host for Anisakis spp. in open waters, though it serves as alternative final host for M. rabuka. Crustaceans and squids could potentially play different roles transmitting nematode species. However, the trophic link C. cephalus-Abraliopsis falco is proposed as a novel infection path for Anisakis spp. (redundancy analysis: R2 = 0.61, F = 2.742, permutations n = 999, p = 0.05). These findings reinforce the carcinophagus feeding trend of C. cephalus and mild nematode infection. Anisakis berlandi is confirmed in the study area and reveals a trans-Pacific range of distribution for A. brevispiculata. [ABSTRACT FROM AUTHOR]

Different types of disasters, whether natural or human in character, lead to the significant loss of human lives. In the latter case, the quick action of identification of corpses and human remains is mandatory. There are a variety of protocols to identify victims; however, genetics is one of the tools that allows an exact identification of the victim. However, several factors may interfere with this identification, from the biological samples' degradation not allowing the analysis of nuclear information, to failure to dispose of biological samples from family members. Access to certain family members could be a determinant of the proper choice of genetic markers that allow the identification of the victim, or his/her inclusion in a given genetic maternal or paternal lineage. New advances in the field of genetics are soon expected to allow for the identification of victims from disasters with only their biological postmortem samples; it may also be possible to draw a robot portrait of a victim's most likely physical characteristics. In all cases, genetics is the only modern tool with universal character and can be used in essentially all biological samples, giving and identification of more or less accurate statistical character, depending on whether nuclear or lineage markers are used. [ABSTRACT FROM AUTHOR]

Kompetitive allele-specific PCR (KASP) was a fluorescence-based homogeneous genotyping technique, which could perform the biallelic genotyping detection on the single nucleotide polymorphism sites and insertion/deletion polymorphisms in the genome・ It had the advantages of rapid detection, low cost and high accuracy・ The composition, amplification principle and reaction steps of KASP detection system were described in this paper, as well as its advantages over the traditional SNP detection methods. Then, the current research progresses in animal genetic identification, functional gene analysis and molecular marker-assisted selection (MAS) assisted breeding were summarized, in order to provide reference for the application of KASP technology in animal field. [ABSTRACT FROM AUTHOR]

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The aim of this study was to analyze the survival and growth of intergeneric (Acispenser ruthenus × Huso huso L.) sterbel hybrids obtained by fertilizing sterlet eggs with cryopreserved beluga semen. The rate of embryonic development did not differ between sterbel hybrids (experimental groups) and sterlets (control groups), and the hatching period was identical in all groups. The survival rate of hybrid larvae was higher in the experimental groups than in the control groups. Body weight and body length measurements revealed that sterbel hybrids grew at a faster rate than the control group sterlets. The hybrid origin of sterbels produced with the use of cryopreserved beluga semen was confirmed in a genetic analysis based on species-specific DNA fragments. To the best of the authors’ knowledge, this is the first study to analyze the growth of sterbel hybrids derived from cryopreserved semen. The research findings indicate that this type of intergeneric hybridization delivers satisfactory results and can be applied in sturgeon aquaculture.

The genus Sarcocystis is an abundant group of Apicomplexa parasites found in mammals, birds, and reptiles. These parasites are characterised by the formation of sarcocysts in the muscles of intermediate hosts and the development of sporocysts in the intestines of definitive hosts. The identification of Sarcocystis spp. is usually carried out in carcasses of animals, while there is a lack of studies on the detection of Sarcocystis species in blood samples. In the current study, blood samples of 214 yellow-necked mice (Apodemus flavicollis) and 143 bank voles (Clethrionomys glareolus) from Lithuania were examined for Sarcocystis. The molecular identification of Sarcocystis was carried out using nested PCR of cox1 and 28S rRNA and subsequent sequencing. Sarcocystis spp. were statistically (p < 0.01) more frequently detected in the bank vole (6.3%) than in yellow-necked mice (0.9%). The analysed parasites were observed in four different habitats, such as mature deciduous forest, bog, natural meadow, and arable land. Three species, Sarcocystis funereus, Sarcocystis myodes, and Sarcocystis cf. glareoli were confirmed in the bank vole, whereas only Sarcocystis myodes were found in yellow-necked mice. The obtained results are important in the development of molecular identification of Sarcocystis parasites in live animals.

In North America, some moose populations are declining, and meningeal worm (Parelaphostrongylus tenuis) infections may be contributing. Moose are aberrant hosts for meningeal worm and develop severe pathology whereas white-tailed deer (WTD) are definitive hosts that experience minimal pathology and spread parasite larvae into the environment. Analyses of harvested WTD heads confirmed meningeal worm in Western Manitoba, Canada including in areas where moose have experienced population declines and are currently of management concern. The prevalence of larval meningeal worm from WTD feces in these areas are unknown, particularly because the dorsal-spined larvae (DSL) are morphologically indistinguishable from muscle worm (Parelaphostrongylus andersoni). To assess transmission risk of DSL, we investigated the spatial and temporal variation of prevalence in WTD feces from four areas (two with historical moose population declines and two without) sampled across two summers. We predicted higher prevalence of DSL in areas where moose are of management concern and surveys have shown higher meningeal worm prevalence in WTD heads. Further, we expected to only recover meningeal worm, as muscle worm has only been reported from caribou in more northern areas of Manitoba. We collected WTD feces by transect sampling, used the Baermann technique to obtain larvae, and sequenced partial cytochrome oxidase 1 and internal transcribed spacer 2 genes to confirm species identity. Zero-inflated models revealed that DSL prevalence did not differ temporally but was higher in areas where moose are of management concern. Genetic analyses revealed that meningeal worm and muscle worm were both present in Western Manitoba and co-occurred in three areas. Our results reveal novel insights into the geographic distribution of muscle worm and emphasize the importance of DNA sequencing for DSL identification. We suggest that concern for moose populations is warranted given the increased risk of parasite infection in some management areas. [Display omitted] • Higher Parelaphostrongylus transmission risk in areas with moose management concern. • DNA sequencing reveals meningeal worm and muscle worm in white-tailed deer feces. • Novel reports of muscle worm infections in white-tailed deer in Manitoba. • Meningeal worm and muscle worm co-occur throughout Western Manitoba. • Wider geographic distribution of muscle worm in Manitoba than previously reported. [ABSTRACT FROM AUTHOR]

Simple Summary: Small mammals not only play an important role in ecosystems, but they also can transmit a wide range of pathogens to humans and domestic animals. The data on protozoan Sarcocystis parasites in orchard-dwelling small mammals are still scarce. Members of the genus Sarcocystis form sarcocysts in the muscles of intermediate hosts and develop sporocysts in the intestines of definitive hosts. In the present study, 679 muscle samples of small mammals, collected in commercial orchards and berry plantations in Lithuania, were screened for Sarcocystis parasites via DNA analysis. The prevalence of Sarcocystis spp. was low as only nine pooled muscle samples were found to contain the parasites examined. Four species were identified in the examined small mammals, including two potentially new Sarcocystis species that were detected in the muscles of voles. The phylogenetic results suggested that birds and mammals are the definitive hosts of the Sarcocystis spp. identified in the current study. Small mammals are an important group of wildlife that can transmit pathogens to humans and animals. There is a lack of comprehensive studies on the protozoan parasites of the genus Sarcocystis in agricultural areas. The aim of the current research was to evaluate the prevalence of Sarcocystis spp., and to identify the parasite species found in the skeletal muscles of rodents and insectivores from commercial orchards. A total of 679 muscle samples from small mammals, mainly rodents (n = 674), belonging to eight species were examined. Muscle samples were pooled into groups, then digested, and the presence of the Sarcocystis species was confirmed by molecular methods. The examined parasites were determined in five rodent species, Apodemus agrarius, A. flavicollis, Clethrionomys glareolus, Microtus arvalis, and M. oeconomus. The prevalence of Sarcocystis spp. was low: 2.23% in voles and 0.79% in mice. Based on a sequence comparison of cox1 and 28S rDNA, four species were identified: S. myodes, Sarcocystis cf. strixi, Sarcocystis sp. Rod1, and Sarcocystis sp. Rod2. This is the first report of S. myodes in A. agrarius, A. flavicollis, and M. arvalis. The identified species were most closely related to Sarcocystis spp., and were transmitted by predatory mammals and birds. Future studies are needed to describe the species morphologically, as well as to define the host spectrum and to evaluate their possible pathogenicity. [ABSTRACT FROM AUTHOR]

The family Deuterophlebiidae is considered the most plesiomorphic Diptera family, with striking morphology and life history. In this study, we provide detailed descriptions and figures of two new species from Southwestern China: Deuterophlebia pseudopoda sp. nov. and Deuterophlebia pachychaeta sp. nov., along with genetic distances of COI sequences between the seven known Chinese species of Deuterophlebia Edwards, 1922. The two new species can be identified by the adults' male terminalia, head structures, male and female antennae and mesothoracic spines or abdominal projections of the pupae. As a result, China is currently the country with the highest Deuterophlebia species diversity. [ABSTRACT FROM AUTHOR]

The sizes of Astyanax mexicanus blind cavefish populations of North-East Mexico are demographic parameters of great importance for investigating a variety of ecological, evolutionary, and conservation issues. However, few estimates have been obtained. For these mobile animals living in an environment difficult to explore as a whole, methods based on capture-mark-recapture are appropriate, but their feasibility and interpretation of results depend on several assumptions that must be carefully examined. Here, we provide evidence that minimally invasive genetic identification from captures at different time intervals (three days and three years) can give insights into cavefish population size dynamics as well as other important demographic parameters of interest. We also provide tools to calibrate sampling and genotyping efforts necessary to reach a given level of precision. Our results suggest that the El Pachón cave population is currently very small, of an order of magnitude of a few hundreds of individuals, and is distributed in a relatively isolated area. The probable decline in population size in the El Pachón cave since the last census in 1971 raises serious conservation issues. [ABSTRACT FROM AUTHOR]

Background: Protothecosis is a rare infectious disease caused by unicellular, achlorophyllous, microalgae of the genus Prototheca, ubiquitously distributed in nature. The algae are emerging pathogens, whose incidence is increasing in both human and animal populations and serious systemic infections related to this pathogen have been increasingly described in humans in recent years. After mastitis in dairy cows, canine protothecosis is the second most prevalent form of the protothecal disease in animals. Here, we report the first case of chronic cutaneous protothecosis due to P. wickerhamii in a dog in Brazil, successfully treated with a long-term therapy with itraconazole in pulse. Case presentation: Upon clinical examination, exudative nasolabial plaque, ulcered, and painful lesions in central and digital pads and lymphadenitis were observed in a 2-year-old mixed-breed dog, with a 4-month history of cutaneous lesions and contact with sewage water. Histopathological examination revealed intense inflammatory reaction, with numerous spherical to oval, encapsulated structures stained with Periodic Acid Schiff, compatible with Prototheca morphology. Tissue culture on Sabouraud agar revealed yeast-like, greyish-white colonies after 48 h of incubation. The isolate was subjected to mass spectrometry profiling and PCR-sequencing of the mitochondrial cytochrome b (CYTB) gene marker, leading to identification of the pathogen as P. wickerhamii. The dog was initially treated with oral itraconazole at a dosage of 10 mg/kg once daily. After six months, the lesions resolved completely, yet recurred shortly after cessation of therapy. The dog was then treated with terbinafine at a dose of 30 mg/kg, once daily for 3 months, with no success. The resolution of clinical signs, with no recurrence over a 36-months follow-up period, was achieved after 3 months of treatment with itraconazole (20 mg/kg) in pulse intermittently on two consecutive days a week. Conclusions: This report highlights the refractoriness of skin infections by Prototheca wickerhamii with therapies proposed in the literature and suggests a new treatment option with oral itraconazole in pulse dosing for long-term disease control successfully performed in a dog with skin lesions. [ABSTRACT FROM AUTHOR]

Abstract Background Protothecosis is a rare infectious disease caused by unicellular, achlorophyllous, microalgae of the genus Prototheca, ubiquitously distributed in nature. The algae are emerging pathogens, whose incidence is increasing in both human and animal populations and serious systemic infections related to this pathogen have been increasingly described in humans in recent years. After mastitis in dairy cows, canine protothecosis is the second most prevalent form of the protothecal disease in animals. Here, we report the first case of chronic cutaneous protothecosis due to P. wickerhamii in a dog in Brazil, successfully treated with a long-term therapy with itraconazole in pulse. Case presentation Upon clinical examination, exudative nasolabial plaque, ulcered, and painful lesions in central and digital pads and lymphadenitis were observed in a 2-year-old mixed-breed dog, with a 4-month history of cutaneous lesions and contact with sewage water. Histopathological examination revealed intense inflammatory reaction, with numerous spherical to oval, encapsulated structures stained with Periodic Acid Schiff, compatible with Prototheca morphology. Tissue culture on Sabouraud agar revealed yeast-like, greyish-white colonies after 48 h of incubation. The isolate was subjected to mass spectrometry profiling and PCR-sequencing of the mitochondrial cytochrome b (CYTB) gene marker, leading to identification of the pathogen as P. wickerhamii. The dog was initially treated with oral itraconazole at a dosage of 10 mg/kg once daily. After six months, the lesions resolved completely, yet recurred shortly after cessation of therapy. The dog was then treated with terbinafine at a dose of 30 mg/kg, once daily for 3 months, with no success. The resolution of clinical signs, with no recurrence over a 36-months follow-up period, was achieved after 3 months of treatment with itraconazole (20 mg/kg) in pulse intermittently on two consecutive days a week. Conclusions This report highlights the refractoriness of skin infections by Prototheca wickerhamii with therapies proposed in the literature and suggests a new treatment option with oral itraconazole in pulse dosing for long-term disease control successfully performed in a dog with skin lesions.

Anthocyanidin Synthase (ANS) is a key enzyme in the later stages of the anthocyanin biosynthetic pathway, and its role is to convert colorless leucoanthocyanidins to colored anthocyanidins. In this study, a total of 75 members of the pomegranate ANS family were identified and divided into four groups (Group I, Group Ⅱ, Group Ⅲ and Group Ⅳ) based on evolutionary relationships. The 75 ANS gene family members were unevenly distributed on seven of the eight chromosomes of pomegranate. The results of the physical and chemical property analysis showed that 93.33% of the proteins were acidic proteins, 6.67% were alkaline proteins, 28% of the proteins were stable proteins and 72% were unstable proteins. Protein secondary structure analysis showed that α-Spiral and irregular curl are the main structural elements. Analysis of the conserved structural domains of the proteins showed that all 75 ANS family members contained one DIOX -N subfamily structural domain and one 2OG-FeII_Oxy subfamily structural domain. The results of subcellular localization showed that all 75 ANS family members of pomegranate were localized in the cytoplasm. Analysis of the transcriptome data showed that the expression of the pomegranate ANS genes were variety-specific and period-specific. [ABSTRACT FROM AUTHOR]

Despite being landed in commercial cephalopod fisheries, species of Alloteuthis are not yet well defined, with A. subulata and A. media often confused. DNA barcoding combined with morphometric analyses has begun to clarify the distinction between these two morphologically similar species but has been limited in its geographic coverage to date. Herein, we provide DNA barcodes for 228 specimens collected from Guinea Bissau in the south, up the Atlantic coast, to the Irish shelf and North Sea. Employing species delimitation analyses, and with comparison to the literature, we identified 24 individuals of A. africana, 66 individuals of A. subulata and 138 individuals of A. media. We confirm that A. media has the northernmost distribution and is the only species identified by DNA sequencing from the Irish shelf and North Sea. We analysed morphometric measures and indices from 388 individuals from the North Sea, a subset of which (n = 58) were barcoded. The most useful traits for identification were tail length as a percentage of dorsal mantle length, and largest club sucker width as a percentage of head width. By comparison to other published data, we determined that A. media phenotypes vary substantially across the geographic range of this species. This partly explains the difficulties in morphological identification and suggests regional identification guides may be required in support of fisheries management. Interregional analyses suggest character displacement may occur where species co-exist. [ABSTRACT FROM AUTHOR]

The diversity of biota in different parts of the planet has demonstrated dramatic changes within the last several decades due to the extinction of native taxa and the appearance of invasive taxa. The correct taxonomic identification of non-native species is important for understanding their dispersal abilities, especially when potential invaders may be of closely related species. Information on the species identity of ricefish (Oryzias spp.), which have formed self-sustainable populations in some parts of Eurasia, is contradictory. In this paper, we studied samples from non-native populations of Oryzias from several Eurasian regions. The results of our mtDNA COI partial sequence study confirm that the individuals we studied belong to the species Chinese ricefish, O. sinensis. Analyses of the literature and our own data suggest that all known alien populations of Oryzias in continental Eurasia belong to the same species, O. sinensis. A recent finding of O. sinensis in the Don delta suggests that one of the species' secondary dispersal pathways could run from the Kuban region through the lower part of the Don basin to the Cis-Azov area. [ABSTRACT FROM AUTHOR]

Despite being one of the most speciose fish families in the Mediterranean Sea, knowledge about the diversity of gobies (Actinopterygii: Gobiidae) in this sea is still unsatisfactory, as documented by recent descriptions of a number of new species. Although very common in shallow water, Gobius incognitus Kovačić & Šanda, 2016, had escaped attention until 2016, when it was discovered. Due to its overall superficial morphological similarity, G. incognitus used to be confused with a much rarer species, Gobius bucchichi Steindachner, 1870, which was considered one of the most common shallow-water gobies in the Mediterranean Sea. In this work, we tested the suitability of the genetic data (mitochondrial gene encoding cytochrome b) for identifying and distinguishing between these two goby species, and assessed the congruency between the distribution records based on genetic data and those based on morphological identification. We analysed material of 304 specimens of G. incognitus and G. bucchichi from 49 localities covering a considerable part of the Mediterranean Sea, Black Sea, and the Atlantic Ocean near Gibraltar, representing 19 geographically well-separated areas. We detected 270 sequences of G. incognitus, and only 34 of G. bucchichi. In both species, a high haplotype variability was observed. The sequence species identity matched morphological identification for all specimens for which vouchers were available. The mean uncorrected p-distance between G. incognitus and G. bucchichi was 13%, while the mean intraspecific distances were much lower (0.63% and 0.68%, respectively). We found 79 fixed mutations between these two species. Data on distribution based on genetic identification are completely congruent with published results based on morphological identification. The results of this study support molecular methods as a reliable tool for distinguishing morphologically similar fish species, which is particularly useful when only tissue is available for determination.

Microsatellite primers are a valuable tool to use for both observational and experimental studies in numerous taxa. Here, we develop 18 and 16 microsatellite markers for the widespread duckweeds Lemna minor and Spirodela polyrhiza, respectively. Only four primers were not polymorphic when tested on samples from Europe and Western Pennsylvania, USA.

• The study evaluated the molecular characterization of 81 accessions, as well as ELISA analysis to estimate sanitary status. • The results can improve grapevines germplasm management and emphasizes the need to recover the endangered genetic diversity. • Autochthonous grapevines have shown a high incidence of certain viruses. The conservation of genetic variability and the preservation of vine biodiversity are critical, current objectives of viticultural research. Germplasm assessment is extremely difficult, particularly when many accessions are included. Microsatellite markers have become an essential tool for germplasm collection management and an approach to genetic diversity. This research reviews the molecular characterization of eighty-one accessions stored at the Skikda germplasm collection in Algeria, as well as ELISA analysis to detect viruses and estimate sanitary status. Accessions were genotyped with 12 highly polymorphic microsatellite markers, including the nine 'international' loci used for grapevine identity. Genetic diversity is affirmed by the high number (149) of different alleles (mean of 12,42 alleles per locus), the average expected heterozygosity and observed heterozygosity were determined to be 0,850 and 0,864, respectively and to uncover instances of synonymy, misnaming, and duplication. A total of 43 distinct genotypes were found and the genotypes of 30 accessions were validated according to the reference literature and Vitis public and private databases; most of autochthonous varieties that have been propagated for a long time in a small, closed and circle area have displayed a high incidence of GLRaV-3 and GVA, with 61.9% and 50%, respectively. A close relationship was demonstrated with certain grape varieties from the eastern and western areas of the Mediterranean basin, resulting from previous vine cultivar exchanges. Together, our results can improve grapevine germplasm management and emphasizes the need to recover the endangered genetic diversity that characterizes negligible and ignored vines or germplasm biotypes, and the need to reappraise and support the effective exploitation of variability resources to assist in the development of new grapes varieties and rootstocks which will then enhance the regional food and agriculture industry. [ABSTRACT FROM AUTHOR]

To explore how Asplenium nidus responds to drought stress and to find V-PPase (AVP1) homologous genes of this species, we conducted greenhouse experiments. We measured a series of physiological and biochemical indices after drought treatment and analyzed the expression of AVP1 homologous genes in A. nidus by RT-qPCR. The results indicated that A. nidus can adapt to drought by limiting stomatal conductance, thus inhibiting plant photosynthesis and reducing physiological activities. In addition, A. nidus can also change its osmotic potential by increasing proline content to maintain normal metabolic activities, and prevent the destruction of reactive oxygen species by increasing the activities of superoxide dismutase (SOD) and peroxidase (POD). According to analysis of the relative expression levels of genes, AVP1-2 and AVP1-4 may be the drought-resistant genes of A. nidus. This study lays a foundation for further exploration of the drought tolerance mechanism and drought-resistant genes of A. nidus. [ABSTRACT FROM AUTHOR]

In this study, the imagoes and subimagoes of Polyplocia orientalis Nguyen & Bae, 2003 (Ephemeroptera, Euthyplociidae) were reared from nymphs in the lab and described for the first time. Nymphal structures are also photographed and described. The imagoes of this species can be identified by having transparent wings (except costal and subcostal areas), sterna without regular markings and penis divergent in apical half and basal half fused. The K2P distance between newly-sequenced COI gene of Chinese materials and a stored Vietnamese one is 0.10. This report not only confirms the presence of the genus and family in China, but also provides the first nymph-imago association in the genus. [ABSTRACT FROM AUTHOR]

Copyright of Journal of Hydrobiology is the property of Editorial Department of Journal of Hydrobiology and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Identifying charred human remains poses a challenge to forensic laboratories. High temperature completely incinerates the superficial tissues and partially destroys bones, forcing the forensics to seek an alternative, for bones and teeth, forensic material that should quickly and cheaply deliver DNA of sufficient quantity and quality. We sought, other than rib cartilage, types of cartilages that could serve as a DNA source. DNA was isolated from the fibrous cartilage of a fibrous ring of intervertebral L1-L2 discs sampled from charred cadavers or charred body fragments: 5 victims of car fires, 1 victim of combustion during a residential house gas explosion, and 3 victims of nitroglycerin explosion. DNA was isolated by the column method. DNA quality and concentration were assessed by RT-PCR and multiplex PCR for 23 autosomal and 17 Y chromosome STR loci. STR polymorphism results obtained by capillary electrophoresis served for likelihood ratio (LR) calculations. DNA concentration in relation to the cadaver's age and post-mortem interval (PMI) were analyzed. All samples (n = 9) yielded good-quality DNA in quantities (0.57–17.51 ng/µL for T. Large autosomal sequence) suitable for STR-based amplification. The isolated DNA characterized a low degradation index (0.80–1.99), and we were able to obtain complete genetic profiles. In each of the nine cases, the genotyping results allowed identifying the victims based on comparative material from the immediate family. The results demonstrate the usefulness of human intervertebral disc fibrocartilage as an alternative DNA source for the genetic identification of charred bodies or charred torso fragments. [ABSTRACT FROM AUTHOR]

Bakterie z rodzaju Azotobacter są przedmiotem wielu badań prowadzonych zarówno w Polsce jak i za granicą. Zainteresowanie tą grupą bakterii w dużej mierze związane jest z ich właściwościami, które mogą być wykorzystywane w rolnictwie. Najnowsze badania opierają się na zaawansowanych metodach molekularnych i bazują na poznanej sekwencji genomów dwóch gatunków: Azotobacter vinelandii i Azotobacter chroococcum. W 2009 roku Setubal i in. opublikowali pełną sekwencję genomu Azotobacter vinelandii DJ, z kolei pełną sekwencję genomu Azotobacter chroococcum 8003 opublikowali Robson i in. w pracy z 2015 roku. Obie bakterie mają pojedynczy, kolisty chromosom o wielkości odpowiednio 5,365,318 pz. i 5,192,291 pz. Poznanie i porównanie sekwencji genomów Azotobacter vinelandii DJ i Azotobacter chroococcum 8003 pozwoliło odpowiedzieć na wiele pytań dotyczących ewolucji, różnorodności i miejsca tych bakterii w środowisku. Zsekwencjonowanie większej liczby genomów innych szczepów A. chroococcum i A. vinelandii przyniosłoby wiele korzyści i pozwoliłoby uporządkować dotychczasową wiedzę na ich temat.

Omphalotus japonicus is a major toxic mushroom in Japan. When food poisoning caused by O. japonicus occurs, quick and accurate identification using a method that does not rely on morphological discrimination is required. Because the loop-mediated isothermal amplification (LAMP) method meets these requirements, we developed a LAMP method for detecting O. japonicus. Amplification occurred within 60 min, and the presence or absence of O. japonicus was confirmed within 2 h, including the DNA extraction protocol. The LAMP method did not show cross-reactivity with 13 species of edible mushrooms, had high specificity toward O. japonicus, and had sufficient detection sensitivity even in a mixed mushroom sample containing 1% O. japonicus. Additionally, O. japonicus could be detected in simulated food poisoning samples of heated and digested mushrooms, and in actual food poisoning residual samples.

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This is the first study to determine the main shark species being sold in the '17 de Diciembre' market, in Santo Domingo de Los Tsáchilas, Ecuador. A total of 150 samples were collected and molecularly identified through a multiplex polymerase chain reaction (PCR) with species-specific primers based on the ribosomal region ITS2. As a result, we found that the shark sales are made up by five main species. The pelagic thresher (Alopias pelagicus) was the most common species, followed by the silky shark (Carcharhinus falciformis), the scalloped hammerhead shark (Sphyrna lewini), the blue shark (Prionace glauca) and the shortfin mako shark (Isurus oxyrinchus). Of the analyzed samples, 93.24% (n = 138) correspond with species that are in one of the International Union for Conservation of Nature (IUCN) threat categories and Appendix II of Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES). The study highlights the need for this molecular tool to be implemented in strategic control points, as well as other measures that better ensure traceability. Four of the five identified species are in Appendix II of CITES. 93.24% of the identified individuals are found in one of the threat categories of IUCN. The shark meat in the '17 de Diciembre' market is cheaper in comparison with most bony fishes that are commercialized. [ABSTRACT FROM AUTHOR]