80 results on '"Gemei, M"'
Search Results
2. Comparative proteomics of CD133+ and CD133- colon cancer cells reveals activation of the Wnt pathway and a potential therapeutic role of SRp20: P09-12
- Author
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Corbo, C., Orru, S., Gemei, M., Di Noto, R., Mirabelli, P., Imperlini, E., Ruoppolo, M., Vecchio, L. D., and Salvatore, F.
- Published
- 2012
3. Characterization of proteins involved in intracellular pathways distinctive for colon cancer stem cells: YSF-17
- Author
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Corbo, C., Del Vecchio, L., Di Noto, R., Gemei, M., Imperlini, E., Mirabelli, P., Orrù, S., Ruoppolo, M., and Salvatore, F.
- Published
- 2010
4. Gaining insights into the role of tumor initiating cells in colon cancer by a multitask approach
- Author
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Corbo, C, Orrù, S, Gemei, M, Di Noto, R, Mirabelli, P, Imperlini, E, Ruoppolo, M, Del Vecchio, L, Salvatore, F, Corbo, C, Orrù, S, Gemei, M, Di Noto, R, Mirabelli, P, Imperlini, E, Ruoppolo, M, Del Vecchio, L, and Salvatore, F
- Subjects
proteomics, mass spec, colon cancer stem cells, CD133 - Published
- 2013
5. CD66c is a novel marker for colorectal cancer stem cell isolation, and its silencing halts tumor growth in vivo
- Author
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Gemei M, Mirabelli P, Di Noto R, Corbo C, Iaccarino A, Zamboli A, Troncone G, Del Vecchio L, Salvatore F., GALIZIA, Gennaro, LIETO, Eva, Gemei, M, Mirabelli, P, Di Noto, R, Corbo, C, Iaccarino, A, Zamboli, A, Troncone, G, Galizia, Gennaro, Lieto, Eva, Del Vecchio, L, and Salvatore, F.
- Published
- 2013
6. The protein expression pattern of CD133+ colon cancer cells indicates activation of the Wnt pathway and potential alteration of splicing mechanisms
- Author
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Corbo, C, Orrù, S, Gemei, M, Di Noto, R, Mirabelli, P, Imperlini, E, Ruoppolo, M, Del Vecchio, L, Salvatore, F, Corbo C, Orrù S, Gemei M, Di Noto R, Mirabelli P, Imperlini E, Ruoppolo M, Del Vecchio L, Salvatore F, Corbo, C, Orrù, S, Gemei, M, Di Noto, R, Mirabelli, P, Imperlini, E, Ruoppolo, M, Del Vecchio, L, Salvatore, F, Corbo C, Orrù S, Gemei M, Di Noto R, Mirabelli P, Imperlini E, Ruoppolo M, Del Vecchio L, and Salvatore F
- Published
- 2011
7. Different Biomarkers address different colorectal cancer stem cell populations: who's the killer?
- Author
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GALIZIA, Gennaro, Gemei M, Pinto M, Zamboli A, Mabilia A, Auricchio A, ORDITURA, Michele, DE VITA, Ferdinando, LIETO, Eva, ROMANO, Ciro Pasquale, Galizia, Gennaro, Gemei, M, Pinto, M, Zamboli, A, Mabilia, A, Auricchio, A, Orditura, Michele, DE VITA, Ferdinando, Lieto, Eva, and Romano, Ciro Pasquale
- Published
- 2012
8. Comparative proteomics of CD133+and CD133-colon cancer cells reveals activation of the Wnt pathway and a potential therapeutic role of SRp20
- Author
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Corbo, C, Orru', Stefania, Gemei, M, Di Noto, R, Mirabelli, P, Imperlini, Esther, Ruoppolo, M, Del Vecchio, L, Salvatore, F., Corbo, C, Orrù, S, Gemei, M, Di Noto, R, Mirabelli, P, Imperlini, E, Ruoppolo, M, Del Vecchio, L, Salvatore, F, Stefania, O, Marica, G, Rosa Di, N, Peppino, M, Esther, I, Margherita, R, Luigi Del, V, and Francesco, S
- Subjects
cancer stem cells, colon cancer, proteomics, biomarkers ,cancer stem cells, colon cancer, proteomics - Published
- 2012
9. The protein expression pattern of CD133+ colon cancer cells indicates activation of the Wnt pathway and potential alteration of splicing mechanisms
- Author
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Corbo C, Orrù S, Gemei M, Di Noto R, Mirabelli P, Imperlini E, Ruoppolo M, Del Vecchio L, Salvatore F, Corbo, C, Orrù, S, Gemei, M, Di Noto, R, Mirabelli, P, Imperlini, E, Ruoppolo, M, Del Vecchio, L, and Salvatore, F
- Subjects
cancer stem cells, proteomics ,BIO/10 - BIOCHIMICA ,cancer stem cell, colon cancer - Published
- 2011
10. Il pattern di espressione proteica di cellule CD133+ di cancro del colon indica attivazione del pathway di WNT e probabile alterazione del meccanismo di splicing
- Author
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Corbo, C, Orrù, S, Gemei, M, Di Noto, R, Mirabelli, P, Ruoppolo, M, Del Vecchio, L, Salvatore, F, Corbo, C, Orrù, S, Gemei, M, Di Noto, R, Mirabelli, P, Ruoppolo, M, Del Vecchio, L, and Salvatore, F
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WNT pathway, cellule staminali tumorali, cancro del colon, proteomica - Published
- 2010
11. Oncoproteomic approaches to cancer marker discovery: The case of colorectal cancer
- Author
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Salvatore, F, Corbo, C, Gemei, M, Vecchio, L, Vecchio, LD, Salvatore, F, Corbo, C, Gemei, M, Vecchio, L, and Vecchio, LD
- Abstract
Colorectal cancer (CRC) is one of the most common types of cancer; it is diagnosed in more than one million people each year and causes the death of about half of them. Early detection can help to decrease CRC-related mortality. In fact, the 5-year survival rate exceeds 90% when the disease is localized and is only 10% in case of metastases. Consequently, it is imperative to improve methods for the early detection of the disease. In this context, genomic approaches have resulted in new CRC biomarkers and have helped to shed light on the genetic basis of cancer as a whole. However, the proteome provides a more dynamic and faithful image of the genetic program of a cell. Hence, given the importance of proteins as effectors of cellular behavior, proteomic analysis has the potential to identify biomarkers that can help to classify and predict CRC. Several proteomic technique, such as matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS), quantitative isotopic protein labeling (SILAC, ICAT, and iTRAQ), and two-dimensional gel electrophoresis (2D-PAGE and 2D-DIGE), are being used in cancer research and can improve the diagnosis of patients; they are also helping to optimize personalized therapy. In this chapter, the main proteomic approaches used in biomarker research will be discussed, together with their impact and potential in the clinical setting. The proteomic biomarkers currently used for CRC diagnosis and/or therapy monitoring will be also described.
- Published
- 2015
12. Carcinoembryonic antigen family cell adhesion molecules (CEACAM) as colorectal cancer biomarkers
- Author
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Gemei, M, Corbo, C, Salvatore, F, Del Vecchio, L, Gemei, M, Corbo, C, Salvatore, F, and Del Vecchio, L
- Abstract
Each year, nearly one million people develop colorectal cancer, and 50% of them are expected to die because of cancer within 5 years of diagnosis. Over the last two decades, significant advances in screening, surgery, adjuvant chemotherapy, and patient monitoring have improved the 5-year survival rate. Colorectal cancer is a molecularly heterogeneous disease, and the analysis of its molecular signatures and the identification of colorectal cancer biomarkers will lead to better screening approaches and personalized therapeutic plans. A biomarker is a substance that can be measured and used as an indicator of a biological and/or pathological state. In cancer pathology, biomarkers can be used to detect the disease, to predict prognosis or response to therapy, and to evaluate the efficacy of therapy thereby improving the patient’s life expectancy and quality of life. The carcinoembryonic antigen (CEA) is the biomarker most frequently used in colorectal cancer. It is effective in the surveillance of colorectal cancer patients and in monitoring the efficacy of therapy, whereas it is less useful in colorectal screening. Recent studies indicate that also CEA-related proteins (CEACAMs) are promising potential colorectal cancer biomarkers. CEA and CEACAM proteins play important roles in cancer pathology, and the analysis of their functions will be useful for the identification of diagnostic and/or prognostic factors and therapeutic targets in colorectal and other cancers.
- Published
- 2015
13. Diminution of eIF4E activity suppresses parkin mutant phenotypes
- Author
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Ottone C, Galasso A, Gemei M, Pisa v, Gigliotti S, Piccioni F, Graziani F, and Verrotti di Pianella A
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Oogenesis ,Translation initiation ,Drosophila ,Parkin - Abstract
Mutations in the human parkin (PARK2) gene cause autosomal recessive-juvenile Parkinson's disease (AR-JP). In Drosophila melanogaster, mutant parkin alleles display a broad range of phenotypic alterations, including female infertility. Here we report that reducing the level of eukaryotic translation initiation factor 4E (eIF4E) activity specifically rescues the female sterile phenotypes associated with the parkinP23 mutant allele. Additional defects, including reduction of pupal viability and body size, are also entirely recovered in both male and female flies of the abovementioned genotype. We further show that a null eIF4E-binding protein (4EBP) allele counteracts the in vivo effects produced, in a parkinP23 mutant background, by the reduction of functional eIF4E copy number. Moreover, Parkin and eIF4E interact in vitro and co-localize at the posterior end of developing oocytes. Finally, we show that eIF4E is over-expressed in parkinP23 mutant ovaries as compared to wild-types. Taken together, our data are consistent with the idea that Parkin and eIF4E act in a common pathway, likely modulating cap-dependent translation initiation events
- Published
- 2011
14. Characterization of proteins involved in intracellular pathways distinctive for colon cancer stem cells
- Author
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Corbo, C, Del Vecchio, L, Di Noto, R, Gemei, M, Imperlini, Esther, Mirabelli, P, Orru', Stefania, Ruoppolo, M, and Salvatore, F.
- Published
- 2010
15. Extended cytometric characterization of colon cancer stem cells subpopulation from fresh tissues biopsies: a prerequisite for in vivo studies
- Author
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Gemei, M, Mirabelli, P, Di Noto, R, Ruoppolo, M, Orru', Stefania, Corbo, C, Salvatore, F, and Del Vecchio, L.
- Published
- 2010
16. CD34+ cells from AML with mutated NPM1 harbor cytoplasic muatated nucleophosmin and generate leukemia in immunocompromised mice
- Author
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Martelli, Mp, Pettirossi, V, Thiede, C, Bonifacio, E, Mezzasoma, F, Cecchini, D, Pacini, R, Tabarrini, A, Ciurnelli, R, Gionfriddo, I, Manes, I, Rossi, R, Giunchi, L, Oelschlagel, U, Brunetti, L, Gemei, M, Delia, M, Specchia, G, Liso, A, DI IANNI, Mauro, DI RAIMONDO, F, Falzetti, F, DEL VECCHIO, L, Martelli, Mf, and Falini, B.
- Published
- 2010
17. 182 TRAP1 represents a key mediator of stemness and glycolytic metabolism in colorectal cancer cells
- Author
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Lettini, G., primary, Maddalena, F., additional, Sisinni, L., additional, Condelli, V., additional, Del Vecchio, L., additional, Gemei, M., additional, Notarangelo, T., additional, and Landriscina, M., additional
- Published
- 2014
- Full Text
- View/download PDF
18. Surface proteomic analysis of differentiated versus stem-like osteosarcoma human cells
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Gemei, M, Corbo, C, D'Alessio, F, Di Noto, R, Vento, R, Del Vecchio, L, Gemei, M, Corbo, C, D'Alessio, F, Di Noto, R, Vento, R, and Del Vecchio, L
- Abstract
Cancer stem cell characterization represents a breakthrough in cancer research. Despite evidence showing the existence and the role of cancer stem cells in osteosarcoma (OS) onset and progression, little is known about their specific surface phenotype. To address this issue, we carried out a cytometric analysis with an antibody-array comprising 245 membrane proteins comparing the stem and differentiated OS cells. As experimental model, we chose the stem-like cell line 3aminobenzamide-OS and its parental, differentiated, cell line MG63. We identified 50 differentially expressed, 23 homogeneously expressed, and 172 not expressed proteins in the two cell line models, thus defining a surface protein signature specific for each of them. Furthermore, we selected ERK1/2 (p44/42 mitogen-activated protein kinases) as a potential pathway correlated with processes that characterize tumorigenic potential and stemness of 3aminobenzamide-OS cells
- Published
- 2013
19. CD66c is a novel marker for colorectal cancer stem cell isolation, and its silencing halts tumor growth in vivo
- Author
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Gemei, M, Mirabelli, P, Di Noto, R, Corbo, C, Iaccarino, A, Zamboli, A, Troncone, G, Galizia, G, Del Vecchio, L, Salvatore, F, Gemei, M, Mirabelli, P, Di Noto, R, Corbo, C, Iaccarino, A, Zamboli, A, Troncone, G, Galizia, G, Del Vecchio, L, and Salvatore, F
- Abstract
BACKGROUND: Despite the well recognized expression of the cell surface markers cluster of differentiation 44 (homing cell adhesion molecule) and CD133 (Prominin 1) on human colorectal cancer stem cells (CCSCs), these molecules do not appear to be effective targets for stem cell-directed therapies. Because the surface marker CD66c (also known as carcinoembryonic antigen-related cell adhesion molecule 6) has demonstrated promise as a therapeutic target in pancreatic malignancy, the authors evaluated its potential as a target for stem cell-directed treatment of colorectal cancer. METHODS: First, the authors characterized CD66c expression by flow cytometry and immunohistochemistry in colon cancer samples and in normal colon tissues. Then, the coexpression of CD66c and CD133 was evaluated on putative CCSCs. CD66c expression also was measured in stem cell-enriched colon spheres. Finally, the effects of small-interfering RNA-mediated CD66c silencing on the in vitro and in vivo growth of Caco2 colon cancer cells were evaluated. RESULTS: CD66c expression was significantly higher in colon cancers than in contiguous normal colon tissues and paralleled cancer stage. CD66c was absent in CD133-positive cells that were isolated from normal colon, whereas its expression was brightest (CD66cbright) in CD133-positive cells from colon cancer samples. In vitro experiments demonstrated that colon spheres were considerably enriched in a CD66cbright population in a fashion comparable to the enrichment observed in fresh liver metastases. In vitro proliferation and clonogenic potential were hampered when CD66c was silenced in Caco2 cells. Finally, in vivo xenograft experiments demonstrated that CD66c silencing almost completely abrogated the tumorigenic potential of Caco2 cells. CONCLUSIONS: CD66cbright expression was associated with colon cancer stem cells and CD66c silencing blocked tumor growth, thereby opening the way to a potential new treatment for colon cancer. Cancer 2013.
- Published
- 2013
20. Mutant p63 causes defective expansion of ectodermal progenitor cells and impaired FGF signalling in AEC syndrome
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Ferone, G., Thomason, H.A., Antonini, D., Rosa, L. De, Hu, B., Gemei, M., Zhou, Huiqing, Ambrosio, R., Rice, D.P., Acampora, D., Bokhoven, H. van, Vecchio, L. Del, Koster, M.I., Tadini, G., Spencer-Dene, B., Dixon, M., Dixon, J., Missero, C., Ferone, G., Thomason, H.A., Antonini, D., Rosa, L. De, Hu, B., Gemei, M., Zhou, Huiqing, Ambrosio, R., Rice, D.P., Acampora, D., Bokhoven, H. van, Vecchio, L. Del, Koster, M.I., Tadini, G., Spencer-Dene, B., Dixon, M., Dixon, J., and Missero, C.
- Abstract
Contains fulltext : 93977.pdf (publisher's version ) (Open Access)
- Published
- 2012
21. Polychromatic flow cytometry analysis of CD34+ hematopoietic stem cells in cryopreserved early preterm human cord blood samples
- Author
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D'Alessio, F., primary, Mirabelli, P., additional, Gorrese, M., additional, Scalia, G., additional, Gemei, M., additional, Mariotti, E., additional, Di Noto, R., additional, Martinelli, P., additional, Fortunato, G., additional, Paladini, D., additional, and Del Vecchio, L., additional
- Published
- 2010
- Full Text
- View/download PDF
22. Combined CD133/CD44 expression as a prognostic indicator of disease-free survival in patients with colorectal cancer.
- Author
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Galizia G, Gemei M, Del Vecchio L, Zamboli A, Di Noto R, Mirabelli P, Salvatore F, Castellano P, Orditura M, De Vita F, Pinto M, Pignatelli C, and Lieto E
- Abstract
Hypothesis: Because of some inconsistencies in the traditional model of human colorectal carcinogenesis, the cancer stem cell (CSC) model was recently proposed, in which tumor results from neoplastic transformation of stem cells, which become CSCs. Identification of CSCs by expression of surface antigens remains a critical issue because no biomarker has been shown to be completely reliable. CD133 and CD44 are commonly used as CSC markers, and correlation of their expression with colorectal cancer (CRC) clinicopathological features and outcomes may be useful. Design: Pilot study. Setting: University hospital. Patients: Thirty-six consecutive patients with CRC. CD133 and CD44 expression (alone or combined) was determined in nontumor cells and in tumor cells by flow cytometry, which identified viable cells only. Main Outcome Measures: Correlation of CD133 and CD44 expression with each other, with other prognostic indicators, and with disease-free survival. Results: CD133 and CD44 expression was significantly higher in tumor cells than in nontumor cells, and expression of one did not necessarily correlate with expression of the other. CD133 or CD44 expression alone was variable, while combined CD133/CD44 expression identified a small subset of cells positive for CRC. CD133 or CD44 overexpression was not associated with CRC recurrence; only high frequencies of CD133
+ /CD44+ cells were a strong indicator of worse disease-free survival and an independent risk factor for CRC recurrence. Conclusion: Evaluation of combined CD133/CD44 expression could be useful to identify putative colorectal CSCs and tumors with a poor prognosis. [ABSTRACT FROM AUTHOR]- Published
- 2012
23. Polychromatic flow cytometry analysis of CD34+ hematopoietic stem cells in cryopreserved early preterm human cord blood samples.
- Author
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D'Alessio, F., Mirabelli, P., Gorrese, M., Scalia, G., Gemei, M., Mariotti, E., Di Noto, R., Martinelli, P., Fortunato, G., Paladini, D., and Del Vecchio, L.
- Abstract
During the last decades, extended characterizations were performed of human full-term cord blood (hTCB) cells, but little information is available on human early preterm cord blood (hEPCB) hematopoietic stem cells (HSCs). In our study, we analyzed by flow cytometry 19 hEPCB and 17 hTCB samples. First, we observed that the percentage of CD34
Pos CD45Dim cells was higher in hEPCB compared with hTCB and that it decreased during 16th-20th week of pregnancy. Within the CD34Pos CD45Dim population, we examined the expression of CD29, CD31, CD38, CD90, CD117, CD133, CD135, CD200, CD243, and CD338. We found that CD135 intensity and CD243Pos cells percentage were lower in hEPCB compared with hTCB. As to CD38, we observed that hEPCB samples were richer in undifferentiated CD34Pos CD45Dim CD38Neg HSCs compared with hTCB counterparts. We also compared the expression of the above-mentioned molecules in undifferentiated and committed HSCs residing in hEPCB and hTCB. In particular, although CD34Pos CD45Dim CD38Pos HSCs from both hEPCB and hTCB expressed relatively higher amounts of CD29, CD71, and CD135 compared with CD34Pos CD45Dim CD38Neg cells, a higher expression of CD31 was restricted to CD34Pos CD45Dim CD38Pos cells from hEPCB samples, and a higher expression of CD117 was demonstrated in CD34Pos CD45Dim CD38Pos cells from hTCB samples. Moreover, our data showed that CD34Pos CD45Dim cell population from hEPCB displayed higher percent of undifferentiated CD38Neg CD133Pos cells compared with hTCB samples. Finally, analyzing monocytes and lymphocytes within the two samples, we observed that T-cell percentages were higher in hTCB, whereas B-cell percentages were higher in hEPCB. We, therefore, studied the B-cell lineage maturation and found a higher percent of pro-B and pre-B cells in hEPCB compared with hTCB samples. Taken together, these results evidence the hematopoietic peculiarity of hEPCB, potentially useful for highlighting early steps of human hematolymphopoiesis as well as for developing novel strategies of stem cell-based therapy. © 2010 International Society for Advancement of Cytometry [ABSTRACT FROM AUTHOR]- Published
- 2011
- Full Text
- View/download PDF
24. Combined CD133/CD44 Expression as a Prognostic Indicator of Disease-Free Survival in Patients With Colorectal Cancer
- Author
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Marica Gemei, Michele Orditura, Gennaro Galizia, Luigi Del Vecchio, Peppino Mirabelli, Ferdinando De Vita, Paolo Castellano, Francesco Salvatore, Carlo Pignatelli, Eva Lieto, Anna Zamboli, Rosa Di Noto, Margherita Pinto, Galizia, Gennaro, Gemei, M, Del Vecchio, L, Zamboli, A, Di Noto, R, Mirabelli, P, Salvatore, F, Castellano, P, Orditura, Michele, DE VITA, Ferdinando, Pinto, M, Pignatelli, C, Lieto, Eva, Gemei, M., DEL VECCHIO, Luigi, Zamboli, A., DI NOTO, Rosa, Mirabelli, P., Salvatore, Francesco, Castellano, P., Orditura, M., DE VITA, Felice, Pinto, M., and Pignatelli, C.
- Subjects
Male ,medicine.medical_specialty ,Pathology ,Colorectal cancer ,Pilot Projects ,medicine.disease_cause ,Disease-Free Survival ,Antigen ,Cancer stem cell ,Antigens, CD ,medicine ,Humans ,Neoplastic transformation ,AC133 Antigen ,neoplasms ,Aged ,Glycoproteins ,biology ,business.industry ,CD44 ,Middle Aged ,medicine.disease ,Prognosis ,Surgery ,Hyaluronan Receptors ,embryonic structures ,biology.protein ,Cancer research ,Biomarker (medicine) ,Female ,Stem cell ,Carcinogenesis ,business ,Colorectal Neoplasms ,Peptides - Abstract
Hypothesis Because of some inconsistencies in the traditional model of human colorectal carcinogenesis, the cancer stem cell (CSC) model was recently proposed, in which tumor results from neoplastic transformation of stem cells, which become CSCs. Identification of CSCs by expression of surface antigens remains a critical issue because no biomarker has been shown to be completely reliable. CD133 and CD44 are commonly used as CSC markers, and correlation of their expression with colorectal cancer (CRC) clinicopathological features and outcomes may be useful. Design Pilot study. Setting University hospital. Patients Thirty-six consecutive patients with CRC.CD133 and CD44 expression (alone or combined) was determined in nontumor cells and in tumor cells by flow cytometry, which identified viable cells only. Main Outcome Measures Correlation of CD133 and CD44 expression with each other, with other prognostic indicators, and with disease-free survival. Results CD133 and CD44 expression was significantly higher in tumor cells than in nontumor cells, and expression of one did not necessarily correlate with expression of the other. CD133 or CD44 expression alone was variable, while combined CD133/CD44 expression identified a small subset of cells positive for CRC. CD133 or CD44 overexpression was not associated with CRC recurrence; only high frequencies of CD133 + /CD44 + cells were a strong indicator of worse disease-free survival and an independent risk factor for CRC recurrence. Conclusion Evaluation of combined CD133/CD44 expression could be useful to identify putative colorectal CSCs and tumors with a poor prognosis.
- Published
- 2012
25. 'Molecular Anatomy': a new multi-dimensional hierarchical scaffold analysis tool
- Author
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Carmen Cerchia, Andrea R. Beccari, Candida Manelfi, Filippo Lunghini, Anna Fava, Carmine Talarico, Marica Gemei, Manelfi, C., Gemei, M., Talarico, C., Cerchia, C., Fava, A., Lunghini, F., and Beccari, A. R.
- Subjects
Scaffold ,Library design ,Computer science ,HTS data analysi ,Information technology ,Library and Information Sciences ,01 natural sciences ,Clustering ,Set (abstract data type) ,03 medical and health sciences ,Graph drawing ,Pruning (decision trees) ,Physical and Theoretical Chemistry ,Representation (mathematics) ,Cluster analysis ,Protocol (object-oriented programming) ,QD1-999 ,030304 developmental biology ,Abstraction (linguistics) ,0303 health sciences ,Network visualization ,Anatomy ,T58.5-58.64 ,Scaffold analysis ,Computer Graphics and Computer-Aided Design ,0104 chemical sciences ,Computer Science Applications ,HTS data analysis ,010404 medicinal & biomolecular chemistry ,Chemistry ,Research Article - Abstract
The scaffold representation is widely employed to classify bioactive compounds on the basis of common core structures or correlate compound classes with specific biological activities. In this paper, we present a novel approach called “Molecular Anatomy” as a flexible and unbiased molecular scaffold-based metrics to cluster large set of compounds. We introduce a set of nine molecular representations at different abstraction levels, combined with fragmentation rules, to define a multi-dimensional network of hierarchically interconnected molecular frameworks. We demonstrate that the introduction of a flexible scaffold definition and multiple pruning rules is an effective method to identify relevant chemical moieties. This approach allows to cluster together active molecules belonging to different molecular classes, capturing most of the structure activity information, in particular when libraries containing a huge number of singletons are analyzed. We also propose a procedure to derive a network visualization that allows a full graphical representation of compounds dataset, permitting an efficient navigation in the scaffold’s space and significantly contributing to perform high quality SAR analysis. The protocol is freely available as a web interface at https://ma.exscalate.eu.
- Published
- 2021
26. Binding Mode Exploration of B1 Receptor Antagonists’ by the Use of Molecular Dynamics and Docking Simulation—How Different Target Engagement Can Determine Different Biological Effects
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Chiara Liberati, Luigi Del Vecchio, Lorena Za, Andrea R. Beccari, Laura Brandolini, Marcello Allegretti, Candida Manelfi, Marica Gemei, Carmen Cerchia, Carmine Talarico, Roberto Russo, Silvia Bovolenta, Gemei, M., Talarico, C., Brandolini, L., Manelfi, C., Za, L., Bovolenta, S., Liberati, C., Del Vecchio, L., Russo, R., Cerchia, C., Allegretti, M., and Beccari, A. R.
- Subjects
0301 basic medicine ,Receptor, Bradykinin B1 ,01 natural sciences ,lcsh:Chemistry ,Cricetinae ,Receptor ,Internalization ,lcsh:QH301-705.5 ,Cells, Cultured ,Spectroscopy ,media_common ,biased signaling ,010304 chemical physics ,Chemistry ,allosteric inhibitors ,General Medicine ,Kinin ,Computer Science Applications ,Molecular Docking Simulation ,Protein Transport ,Allosteric Site ,Protein Binding ,Allosteric inhibitor ,media_common.quotation_subject ,Allosteric regulation ,CHO Cells ,Molecular Dynamics Simulation ,Article ,Catalysis ,Inorganic Chemistry ,03 medical and health sciences ,Cricetulus ,Allosteric Regulation ,In vivo ,0103 physical sciences ,Animals ,Humans ,Physical and Theoretical Chemistry ,Molecular Biology ,IC50 ,neuropathic pain ,Organic Chemistry ,bradykinin 1 ,Antagonist ,Bradykinin B1 Receptor Antagonists ,030104 developmental biology ,lcsh:Biology (General) ,lcsh:QD1-999 ,Docking (molecular) ,Biophysics ,Neuralgia - Abstract
The kinin B1 receptor plays a critical role in the chronic phase of pain and inflammation. The development of B1 antagonists peaked in recent years but almost all promising molecules failed in clinical trials. Little is known about these molecules&rsquo, mechanisms of action and additional information will be necessary to exploit the potential of the B1 receptor. With the aim of contributing to the available knowledge of the pharmacology of B1 receptors, we designed and characterized a novel class of allosteric non-peptidic inhibitors with peculiar binding characteristics. Here, we report the binding mode analysis and pharmacological characterization of a new allosteric B1 antagonist, DFL20656. We analyzed the binding of DFL20656 by single point mutagenesis and radioligand binding assays and we further characterized its pharmacology in terms of IC50, B1 receptor internalization and in vivo activity in comparison with different known B1 antagonists. We highlighted how different binding modes of DFL20656 and a Merck compound (compound 14) within the same molecular pocket can affect the biological and pharmacological properties of B1 inhibitors. DFL20656, by its peculiar binding mode, involving tight interactions with N114, efficiently induced B1 receptor internalization and evoked a long-lasting effect in an in vivo model of neuropathic pain. The pharmacological characterization of different B1 antagonists highlighted the effects of their binding modes on activity, receptor occupancy and internalization. Our results suggest that part of the failure of most B1 inhibitors could be ascribed to a lack of knowledge about target function and engagement.
- Published
- 2020
27. Postoperative Detection of Circulating Tumor Cells Predicts Tumor Recurrence in Colorectal Cancer Patients
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Paolo Castellano, Marica Gemei, Andrea Mabilia, Luigi Del Vecchio, Michele Orditura, Gennaro Galizia, Ferdinando De Vita, Eva Lieto, Annamaria Auricchio, Anna Zamboli, Ciro Romano, Galizia, G, Gemei, M, Orditura, M, Romano, C, Zamboli, A, Castellano, P, Mabilia, A, Auricchio, Alberto, De Vita, F, DEL VECCHIO, Luigi, Lieto, E., Auricchio, A, Del Vecchio, L, Lieto, E, Galizia, Gennaro, Orditura, Michele, Romano, Ciro Pasquale, DE VITA, Ferdinando, and Lieto, Eva
- Subjects
Male ,Oncology ,medicine.medical_specialty ,Time Factors ,Colorectal cancer ,Tumor M2-PK ,Flow cytometry ,Circulating tumor cell ,Antigen ,Internal medicine ,Humans ,Medicine ,Radical surgery ,Survival rate ,Aged ,medicine.diagnostic_test ,business.industry ,Gastroenterology ,Neoplastic Cells, Circulating ,Prognosis ,medicine.disease ,Tumor recurrence ,Female ,Surgery ,Neoplasm Recurrence, Local ,Colorectal Neoplasms ,business - Abstract
NTRODUCTION: Circulating tumor cells are thought to play a crucial role in the development of distant metastases. Their detection in the blood of colorectal cancer patients may be linked to poor outcome, but current evidence is controversial. MATERIALS AND METHODS: Pre- and postoperative flow cytometric analysis of blood samples was carried out in 76 colorectal cancer patients undergoing surgical resection. The EpCAM/CD326 epithelial surface antigen was used to identify circulating tumor cells. RESULTS: Fifty-four (71%) patients showed circulating tumor cells preoperatively, and all metastatic patients showed high levels of circulating tumor cells. Surgical resection resulted in a significant decrease in the levels of circulating tumor cells. Among 69 patients undergoing radical surgery, 16 had high postoperative levels of circulating tumor cells, and 12 (75%) experienced tumor recurrence. High postoperative level of circulating tumor cells was the only independent variable related to cancer relapse. In patients without circulating tumor cells, the progression-free survival rate increased from 16 to 86%, with a reduction in the risk of tumor relapse greater than 90%. CONCLUSIONS: High postoperative levels of circulating tumor cells accurately predicted tumor recurrence, suggesting that assessment of circulating tumor cells could optimize tailored management of colorectal cancer patients.
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- 2013
- Full Text
- View/download PDF
28. Carcinoembryonic antigen family cell adhesion molecules (CEACAM) as colorectal cancer biomarkers
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Claudia Corbo, L Del Vecchio, Francesco Salvatore, Marica Gemei, Gemei, M, Corbo, C, Salvatore, F, and Del Vecchio, L
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Oncology ,medicine.medical_specialty ,biology ,Colorectal cancer ,business.industry ,Fecal occult blood ,Rectum ,Cancer ,colorectal cancer, cancer stem cells ,medicine.disease ,Carcinoembryonic antigen ,medicine.anatomical_structure ,Cancer stem cell ,Internal medicine ,medicine ,biology.protein ,Biomarker (medicine) ,business ,Survival rate - Abstract
Each year, nearly one million people develop colorectal cancer, and 50 % of them are expected to die because of cancer within 5 years of diagnosis. Over the last two decades, significant advances in screening, surgery, adjuvant chemotherapy, and patient monitoring have improved the 5-year survival rate. Colorectal cancer is a molecularly heterogeneous disease, and the analysis of its molecular signatures and the identification of colorectal cancer biomarkers will lead to better screening approaches and personalized therapeutic plans. A biomarker is a substance that can be measured and used as an indicator of a biological and/or pathological state. In cancer pathology, biomarkers can be used to detect the disease, to predict prognosis or response to therapy, and to evaluate the efficacy of therapy thereby improving the patient’s life expectancy and quality of life. The carcinoembryonic antigen (CEA) is the biomarker most frequently used in colorectal cancer. It is effective in the surveillance of colorectal cancer patients and in monitoring the efficacy of therapy, whereas it is less useful in colorectal screening. Recent studies indicate that also CEA-related proteins (CEACAMs) are promising potential colorectal cancer biomarkers. CEA and CEACAM proteins play important roles in cancer pathology, and the analysis of their functions will be useful for the identification of diagnostic and/or prognostic factors and therapeutic targets in colorectal and other cancers. List of Abbreviations CEA Carcinoembyonic Antigen CEACAM Carcinoembryonic Antigen-Family Cell Adhesion Molecule FOBT Fecal Occult Blood Test GPI Glycosylphosphatidylinositol Ig Immunoglobulin IgCAM Ig-like Cell Adhesion Molecule PCR Polymerase Chain Reaction TNM Tumor Nodes Metastases Key Facts of Colorectal Cancer • The intestine is the main site of nutrient absorption; it is subdivided in small and large intestine. The latter comprises the right colon, transverse colon, left colon, sigma, and rectum. • Colorectal cancer develops from uncontrolled growth of colorectal mucosa cells. • Colorectal cancer is an epithelial cancer arising in almost 80 % of cases from nonmalignant lesions that turned into cancer within 5–10 years of their appearance. 686 M. Gemei et al.
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- 2015
29. CD 26-positive/CD 326-negative circulating cancer cells as prognostic markers for colorectal cancer recurrence
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Annamaria Auricchio, Andrea Mabilia, Gennaro Galizia, Paolo Castellano, Marica Gemei, Eva Lieto, Ferdinando De Vita, Ciro Romano, Michele Orditura, Anna Zamboli, Lieto, Eva, Galizia, Gennaro, Orditura, Michele, Romano, Ciro Pasquale, Zamboli, A, Castellano, P, Mabilia, A, Auricchio, Am, DE VITA, Ferdinando, and Gemei, M.
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Oncology ,Cancer Research ,medicine.medical_specialty ,Pathology ,Oncogene ,Cluster of differentiation ,Colorectal cancer ,business.industry ,flow cytometry ,Cancer ,colorectal cancer ,Articles ,medicine.disease ,circulating tumor cell ,Circulating tumor cell ,Internal medicine ,Cancer cell ,cluster of differentiation 26 ,medicine ,Clinical significance ,patient management ,business ,Survival rate - Abstract
The present study evaluated the presence and clinical relevance of a cluster of differentiation (CD)26+/CD326− subset of circulating tumor cells (CTCs) in pre- and post-operative blood samples of colorectal cancer patients, who had undergone curative or palliative intervention, in order to find a novel prognostic factor for patient management and follow-up. In total, 80 colorectal cancer patients, along with 25 healthy volunteers were included. The easily transferable methodology of flow cytometry, along with multiparametric antibody staining were used to selectively evaluate CD26+/CD326− CTCs in the peripheral blood samples of colorectal cancer patients. The multiparametric selection allowed any enrichment methods to be avoided thus rendering the whole procedure suitable for clinical routine. The presence of CD26+/CD326− cells was higher in advanced Dukes’ stages and was significantly associated with poor survival and high recurrence rates. Relapsing and non-surviving patients showed the highest number of CD26+/CD326− CTCs. High pre-operative levels of CD26+/CD326− CTCs correctly predicted tumor relapse in 44.4% of the cases, while 69% of post-operative CD26+/CD326− CTC-positive patients experienced cancer recurrence, with a test accuracy of 88.8%. By contrast, post-operative CD26+/CD326− CTC-negative patients showed an increase in the three-year progression-free survival rate of 86%, along with a reduced risk of tumor relapse of >90%. In conclusion, CD26+/CD326− CTCs are an independent prognostic factor for tumor recurrence rate in multivariate analysis, suggesting that their evaluation could be an additional factor for colorectal cancer recurrence risk evaluation in patient management.
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- 2015
30. Oncoproteomic Approaches to Cancer Marker Discovery: The Case of Colorectal Cancer
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Francesco Salvatore, Marica Gemei, Luigi Del Vecchio, Claudia Corbo, Salvatore, F, Corbo, C, Gemei, M, and Vecchio, L
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Oncology ,medicine.medical_specialty ,Colorectal cancer ,business.industry ,Fecal occult blood ,Cancer ,Context (language use) ,Proteomics ,medicine.disease ,colorectal cancer, proteomics, biomarkers ,Internal medicine ,Proteome ,medicine ,Biomarker (medicine) ,business ,Barium enema - Abstract
Colorectal cancer (CRC) is one of the most common types of cancer; it is diagnosed in more than one million people each year and causes the death of about half of them. Early detection can help to decrease CRC-related mortality. In fact, the 5-year survival rate exceeds 90 % when the disease is localized and is only 10 % in case of metastases. Consequently, it is imperative to improve methods for the early detection of the disease. In this context, genomic approaches have resulted in new CRC biomarkers and have helped to shed light on the genetic basis of cancer as a whole. However, the proteome provides a more dynamic and faithful image of the genetic program of a cell. Hence, given the importance of proteins as effectors of cellular behavior, proteomic analysis has the potential to identify biomarkers that can help to classify and predict CRC. Several proteomic technique, such as matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS), quantitative isotopic protein labeling (SILAC, ICAT, and iTRAQ), and two-dimensional gel electrophoresis (2D-PAGE and 2D-DIGE), are being used in cancer research and can improve the diagnosis of patients; they are also helping to optimize personalized therapy. In this chapter, the main proteomic approaches used in biomarker research will be discussed, together with their impact and potential in the clinical setting. The proteomic biomarkers currently used for CRC diagnosis and/or therapy monitoring will be also described. List of Abbreviations 2D-DIGE Two-Dimensional Differential In-gel Electrophoresis 2D-PAGE Two-Dimensional Polyacrylamide Gel Electrophoresis APC Adenomatous Polyposis Coli CEA Carcinoembryonic Antigen CRC Colorectal Cancer Cy2 Cyanine 2 Fluorescent Dye Cy3 Cyanine 3 Fluorescent Dye Cy5 Cyanine 5 Fluorescent Dye DCBE Double-Contrast Barium Enema ESI Electrospray Ionization FIT Fecal Immunological Test FOBT Fecal Occult Blood Test *Email: salvator@unina.it Biomarkers in Cancer DOI 10.1007/978-94-007-7744-6_16-1 # Springer Science+Business Media Dordrecht 2014
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- 2015
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31. Novel Pancreas Organogenesis Markers Refine the Pancreatic Differentiation Roadmap of Embryonic Stem cells
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Antonella Federico, Maria Teresa De Angelis, Fulvio D'Angelo, Mario De Felice, Michele Ceccarelli, Geppino Falco, Filomena Russo, Marica Gemei, Luigi Del Vecchio, De Angelis, Mt, Russo, F, D'Angelo, F, Federico, A, Gemei, M, DEL VECCHIO, Luigi, Ceccarelli, M, DE FELICE, Mario, and Falco, Geppino
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Cancer Research ,Pathology ,medicine.medical_specialty ,Organogenesis ,Gene Expression ,Nerve Tissue Proteins ,Biology ,Bud ,Progenitor cells ,Cell therapy ,Mice ,medicine ,Animals ,Progenitor cell ,Induced pluripotent stem cell ,Pancreas ,Embryonic Stem Cells ,Glycoproteins ,Homeodomain Proteins ,Gene Expression Regulation, Developmental ,Embryonic Stage ,Cell Differentiation ,Cell Biology ,Embryonic stem cell ,Cell biology ,medicine.anatomical_structure ,Organ Specificity ,Trans-Activators ,Intercellular Signaling Peptides and Proteins ,Laser microdissection ,Stem cell ,Specification ,Reprogramming ,Biomarkers - Abstract
The generation of pancreatic endocrine and exocrine functional precursors from embryonic stem cells (ESCs) is an intriguing opportunity to address cell therapy challenges. The main goal of cellular regeneration is to derive, in vitro, pancreatic progenitor cells (PPCs) that retain the capacity to differentiate following the in vivo developmental ontogeny. In our work, we aim to refine the pancreatic in vitro cellular transitions, through the identification of the intrinsic factors that mark the pancreas budding process at embryonic stage 10.5 (E10.5), in which pancreas precursor specification predominantly occurs. We identified a cohort of genes (Bex1, Nepn, Pcbd1, Prdxdd1, Rnf160, Slc2a1, and Tff3) that marked the pancreas budding genesis, and above all signaled ESC differentiation transitions during pancreatic lineage commitment. Noticeably, we demonstrated that the expression of Nepn marked a naïve pancreatic cellular state that resembled PPC-like specification. Our data considerably improve the comprehension of pancreatic cellular ontogeny, which could be critical for implementing pluripotent stem cells programming and reprogramming toward pancreatic lineage commitment. © 2014 Springer Science+Business Media New York.
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- 2014
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32. Divergent expression of CD133 in different studies on HCT-116 cell line
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Luigi Del Vecchio, Giuliana Fortunato, Marica Gemei, Rosa Di Noto, Peppino Mirabelli, Gemei, M., Mirabelli, P., DI NOTO, Rosa, Fortunato, Giuliana, and DEL VECCHIO, Luigi
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Cancer Research ,Text mining ,Oncology ,Established cell line ,Expression (architecture) ,Cell culture ,business.industry ,Immunology ,Biology ,business ,Cell biology - Published
- 2010
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33. Surface proteomic analysis of differentiated versus stem-like osteosarcoma human cells
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Marica Gemei, Claudia Corbo, Renza Vento, Rosa Di Noto, Luigi Del Vecchio, Francesca D'Alessio, Gemei, M, Corbo, C, D'Alessio, F, Di Noto, R, Vento, R, DEL VECCHIO, Luigi, Del Vecchio, L, and D’Alessio1, F
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Proteomics ,Surface phenotype ,Proteome ,Biology ,Stem cell marker ,Biochemistry ,Cancer stem cell ,Settore BIO/10 - Biochimica ,medicine ,Humans ,Cancer stem cell, Cell biology, Osteosarcoma, Surface proteome ,Protein Interaction Maps ,Molecular Biology ,Osteosarcoma ,Kinase ,Membrane Proteins ,Cell Differentiation ,medicine.disease ,Cell biology ,Membrane protein ,Cell culture ,Neoplastic Stem Cells ,cancer stem cells, proteomics, osteosarcoma - Abstract
Cancer stem cell characterization represents a breakthrough in cancer research. Despite evidence showing the existence and the role of cancer stem cells in osteosarcoma (OS) onset and progression, little is known about their specific surface phenotype. To address this issue, we carried out a cytometric analysis with an antibody-array comprising 245 membrane proteins comparing the stem and differentiated OS cells. As experimental model, we chose the stem-like cell line 3aminobenzamide-OS and its parental, differentiated, cell line MG63. We identified 50 differentially expressed, 23 homogeneously expressed, and 172 not expressed proteins in the two cell line models, thus defining a surface protein signature specific for each of them. Furthermore, we selected ERK1/2 (p44/42 mitogen-activated protein kinases) as a potential pathway correlated with processes that characterize tumorigenic potential and stemness of 3aminobenzamide-OS cells.
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- 2013
34. Cytometric profiling of CD133+ cells in human colon ???carcinoma cell lines identifies a common core phenotype ???and cell type-specific mosaics
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Luigi Del Vecchio, Marica Gemei, Rosa Di Noto, Peppino Mirabelli, Gemei, M, Di Noto, R, Mirabelli, P, and DEL VECCHIO, Luigi
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0301 basic medicine ,Cancer Research ,Colorectal cancer ,Clinical Biochemistry ,Biology ,medicine.disease_cause ,CD49b ,Pathology and Forensic Medicine ,03 medical and health sciences ,0302 clinical medicine ,Antigen ,Cancer stem cell ,Antigens, CD ,Cell Line, Tumor ,medicine ,Biomarkers, Tumor ,Humans ,CD90 ,AC133 Antigen ,Glycoproteins ,medicine.disease ,Flow Cytometry ,Cell biology ,030104 developmental biology ,Phenotype ,Oncology ,Cell culture ,030220 oncology & carcinogenesis ,embryonic structures ,Colonic Neoplasms ,Cancer research ,Neoplastic Stem Cells ,Stem cell ,Carcinogenesis ,Peptides - Abstract
In colorectal cancer, CD133+ cells from fresh biopsies proved to be more tumorigenic than their CD133– counterparts. Nevertheless, the function of CD133 protein in tumorigenic cells seems only marginal. Moreover, CD133 expression alone is insufficient to isolate true cancer stem cells, since only 1 out of 262 CD133+ cells actually displays stem-cell capacity. Thus, new markers for colorectal cancer stem cells are needed. Here, we show the extensive characterization of CD133+ cells in 5 different colon carcinoma continuous cell lines (HT29, HCT116, Caco2, GEO and LS174T), each representing a different maturation level of colorectal cancer cells. Markers associated with stemness, tumorigenesis and metastatic potential were selected. We identified 6 molecules consistently present on CD133+ cells: CD9, CD29, CD49b, CD59, CD151, and CD326. By contrast, CD24, CD26, CD54, CD66c, CD81, CD90, CD99, CD112, CD164, CD166, and CD200 showed a discontinuous behavior, which led us to identify cell type-specific surface antigen mosaics. Finally, some antigens, e.g. CD227, indicated the possibility of classifying the CD133+ cells into 2 subsets likely exhibiting specific features. This study reports, for the first time, an extended characterization of the CD133+ cells in colon carcinoma cell lines and provides a “dictionary” of antigens to be used in colorectal cancer research.
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- 2013
35. CD66c is a novel marker for colorectal cancer stem cell isolation, and its silencing halts tumor growth in vivo
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Marica, Gemei, Peppino, Mirabelli, Rosa, Di Noto, Claudia, Corbo, Antonino, Iaccarino, Anna, Zamboli, Giancarlo, Troncone, Gennaro, Galizia, Eva, Lieto, Luigi, Del Vecchio, Francesco, Salvatore, Gemei, M, Mirabelli, P, Di Noto, R, Corbo, C, Iaccarino, A, Zamboli, A, Troncone, G, Galizia, G, Del Vecchio, L, and Salvatore, F
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Male ,Colon ,Mice, Nude ,Cell Separation ,GPI-Linked Proteins ,Xenograft Model Antitumor Assays ,Mice ,Antigens, CD ,Reference Values ,CD133, CD66c, colon cancer, cancer stem cells ,Biomarkers, Tumor ,Neoplastic Stem Cells ,Animals ,Humans ,Female ,AC133 Antigen ,Gene Silencing ,Caco-2 Cells ,Colorectal Neoplasms ,Peptides ,Cell Adhesion Molecules ,Glycoproteins - Abstract
BACKGROUND: Despite the well recognized expression of the cell surface markers cluster of differentiation 44 (homing cell adhesion molecule) and CD133 (Prominin 1) on human colorectal cancer stem cells (CCSCs), these molecules do not appear to be effective targets for stem cell-directed therapies. Because the surface marker CD66c (also known as carcinoembryonic antigen-related cell adhesion molecule 6) has demonstrated promise as a therapeutic target in pancreatic malignancy, the authors evaluated its potential as a target for stem cell-directed treatment of colorectal cancer. METHODS: First, the authors characterized CD66c expression by flow cytometry and immunohistochemistry in colon cancer samples and in normal colon tissues. Then, the coexpression of CD66c and CD133 was evaluated on putative CCSCs. CD66c expression also was measured in stem cell-enriched colon spheres. Finally, the effects of small-interfering RNA-mediated CD66c silencing on the in vitro and in vivo growth of Caco2 colon cancer cells were evaluated. RESULTS: CD66c expression was significantly higher in colon cancers than in contiguous normal colon tissues and paralleled cancer stage. CD66c was absent in CD133-positive cells that were isolated from normal colon, whereas its expression was brightest (CD66cbright) in CD133-positive cells from colon cancer samples. In vitro experiments demonstrated that colon spheres were considerably enriched in a CD66cbright population in a fashion comparable to the enrichment observed in fresh liver metastases. In vitro proliferation and clonogenic potential were hampered when CD66c was silenced in Caco2 cells. Finally, in vivo xenograft experiments demonstrated that CD66c silencing almost completely abrogated the tumorigenic potential of Caco2 cells. CONCLUSIONS: CD66cbright expression was associated with colon cancer stem cells and CD66c silencing blocked tumor growth, thereby opening the way to a potential new treatment for colon cancer. Cancer 2013.
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- 2013
36. Protein cross-talk in CD133+ colon cancer cells indicates activation of the Wnt pathway and upregulation of SRp20 that is potentially involved in tumorigenicity
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Margherita Ruoppolo, Stefania Orrù, Marica Gemei, Francesco Salvatore, Luigi Del Vecchio, Esther Imperlini, Rosa Di Noto, Peppino Mirabelli, Claudia Corbo, Corbo, C, Orrù, S, Gemei, M, Noto, Rd, Mirabelli, P, Imperlini, Esther, Ruoppolo, Margherita, DEL VECCHIO, Luigi, Salvatore, Francesco, Noto, R, Imperlini, E, Ruoppolo, M, Vecchio, L, and Salvatore, F
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Colorectal cancer ,Blotting, Western ,Wnt pathway ,Cell Growth Processes ,Biology ,medicine.disease_cause ,Biochemistry ,colon CSCs ,Downregulation and upregulation ,Antigens, CD ,Cancer stem cell ,medicine ,CD133 ,2D-DIGE ,SRp20 ,Humans ,Electrophoresis, Gel, Two-Dimensional ,AC133 Antigen ,Gene Silencing ,RNA, Small Interfering ,colon CSC ,Wnt Signaling Pathway ,Molecular Biology ,proteomic ,Glycoproteins ,Serine-Arginine Splicing Factors ,Cell growth ,Wnt signaling pathway ,RNA-Binding Proteins ,Reproducibility of Results ,LRP6 ,LRP5 ,Flow Cytometry ,HCT116 Cells ,medicine.disease ,Up-Regulation ,Cell biology ,Colonic Neoplasms ,Neoplastic Stem Cells ,Caco-2 Cells ,Peptides ,Carcinogenesis ,colorectal cancer,cancer stem cells, proteomics - Abstract
The cancer stem cell (CSC) theory represents a breakthrough in cancer research. We characterized the protein pattern of CSCs to identify specific intracellular pathways in this subpopulation of tumor cells. We studied colon CSCs using two different colon cancer cell lines: CaCo-2 and HCT- 116. Putative CSCs were separated from non-CSCs by flow cytometry using CD133 as stemness marker. Total protein extracts of CD133+ cells were then compared to protein extracts of CD133- cells by 2D DIGE. The protein spots differentially expressed in the two subpopulation of cells were analyzed by mass spectrometry. Bioinformatics analysis of the identified proteins indicated alteration of two main processes: energy metabolism and the Wnt pathway. Interestingly, we observed up-regulation of the splicing factor SRp20, a newly identified target gene of the Wnt/??- catenin pathway, and we demonstrated a direct cause-effect relationship between Wnt pathway activation and the increased SRp20 expression. Our results also show that SRp20 influences cell proliferation, which suggests it plays a role in the tumorigenicity of CD133+ cells. In conclusion, activation of the Wnt pathway in CD133+ cells and up-regulation of SRp20, which is implicated in tumorigenesis, raises the possibility of a sequential series of molecular events occurring in connection with this process.
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- 2012
37. Polychromatic flow cytometry analysis of CD34+ hematopoietic stem cells in cryopreserved early preterm human cord blood samples
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Giuliana Fortunato, P. Martinelli, Peppino Mirabelli, Elisabetta Mariotti, Marica Gemei, Dario Paladini, Francesca D'Alessio, Giulia Scalia, R Di Noto, L Del Vecchio, Marisa Gorrese, D'Alessio, F., Mirabelli, P., Gorrese, M., Scalia, G., Gemei, M., Mariotti, E., Di Noto, R., Martinelli, Pasquale, Fortunato, G., Paladini, Dario, and DEL VECCHIO, Luigi
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Histology ,T-Lymphocytes ,Population ,CD34 ,Antigens, CD34 ,Gestational Age ,Biology ,CD38 ,Monocytes ,Pathology and Forensic Medicine ,Flow cytometry ,Andrology ,Pregnancy ,medicine ,Humans ,Cell Lineage ,CD90 ,education ,Cryopreservation ,B-Lymphocytes ,education.field_of_study ,medicine.diagnostic_test ,Infant, Newborn ,Cell Biology ,Fetal Blood ,Flow Cytometry ,Hematopoietic Stem Cells ,ADP-ribosyl Cyclase 1 ,Lymphocyte Subsets ,Haematopoiesis ,Cord blood ,Immunology ,Leukocyte Common Antigens ,Female ,Stem cell ,Infant, Premature - Abstract
During the last decades, extended characterizations were performed of human full-term cord blood (hTCB) cells, but little information is available on human early preterm cord blood (hEPCB) hematopoietic stem cells (HSCs). In our study, we analyzed by flow cytometry 19 hEPCB and 17 hTCB samples. First, we observed that the percentage of CD34(Pos)CD45(Dim) cells was higher in hEPCB compared with hTCB and that it decreased during 16th-20th week of pregnancy. Within the CD34(Pos)CD45(Dim) population, we examined the expression of CD29, CD31, CD38, CD90, CD117, CD133, CD135, CD200, CD243, and CD338. We found that CD135 intensity and CD243(Pos) cells percentage were lower in hEPCB compared with hTCB. As to CD38, we observed that hEPCB samples were richer in undifferentiated CD34(Pos)CD45(Dim)CD38(Neg) HSCs compared with hTCB counterparts. We also compared the expression of the above-mentioned molecules in undifferentiated and committed HSCs residing in hEPCB and hTCB. In particular, although CD34(Pos)CD45(Dim)CD38(Pos) HSCs from both hEPCB and hTCB expressed relatively higher amounts of CD29, CD71, and CD135 compared with CD34(Pos)CD45(Dim)CD38(Neg) cells, a higher expression of CD31 was restricted to CD34(Pos)CD45(Dim)CD38(Pos) cells from hEPCB samples, and a higher expression of CD117 was demonstrated in CD34(Pos)CD45(Dim)CD38(Pos) cells from hTCB samples. Moreover, our data showed that CD34(Pos)CD45(Dim) cell population from hEPCB displayed higher percent of undifferentiated CD38(Neg)CD133(Pos) cells compared with hTCB samples. Finally, analyzing monocytes and lymphocytes within the two samples, we observed that T-cell percentages were higher in hTCB, whereas B-cell percentages were higher in hEPCB. We, therefore, studied the B-cell lineage maturation and found a higher percent of pro-B and pre-B cells in hEPCB compared with hTCB samples. Taken together, these results evidence the hematopoietic peculiarity of hEPCB, potentially useful for highlighting early steps of human hematolymphopoiesis as well as for developing novel strategies of stem cell-based therapy.
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- 2011
38. The percentage of CD133+ cells in human colorectal cancer cell lines is influenced by Mycoplasma hyorhinis infection
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Rosa Di Noto, Peppino Mirabelli, Francesca D'Alessio, Elisabetta Mariotti, Marica Gemei, Giuliana Fortunato, Luigi Del Vecchio, Mariotti, E., Gemei, M., Mirabelli, P., D'Alessio, F., DI NOTO, Rosa, Fortunato, Giuliana, and DEL VECCHIO, Luigi
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Mycoplasma hyorhinis ,Cancer Research ,Colorectal cancer ,medicine.disease_cause ,lcsh:RC254-282 ,Microbiology ,Flow cytometry ,Cancer stem cell ,Antigens, CD ,Cell Line, Tumor ,Genetics ,Medicine ,Humans ,Mycoplasma Infections ,AC133 Antigen ,Glycoproteins ,biology ,medicine.diagnostic_test ,business.industry ,Mycoplasma ,medicine.disease ,biology.organism_classification ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Virology ,Oncology ,Cell culture ,Mollicutes ,Stem cell ,business ,Colorectal Neoplasms ,Peptides ,HT29 Cells ,Tenericutes ,Research Article - Abstract
Background Mollicutes contamination is recognized to be a critical issue for the cultivation of continuous cell lines. In this work we characterized the effect of Mycoplasma hyorhinis contamination on CD133 expression in human colon cancer cell lines. Methods MycoAlert® and mycoplasma agar culture were used to detect mycoplasma contamination on GEO, SW480 and HT-29 cell lines. Restriction fragment length polymorphism assay was used to determine mycoplasma species. All cellular models were decontaminated by the use of a specific antibiotic panel (Enrofloxacin, Ciprofloxacin, BM Cyclin 1 and 2, Mycoplasma Removal Agent and MycoZap®). The percentage of CD133 positive cells was analyzed by flow cytometry on GEO, SW480 and HT-29 cell lines, before and after Mycoplasma hyorhinis eradication. Results Mycoplasma hyorhinis infected colon cancer cell lines showed an increased percentage of CD133+ cells as compared to the same cell lines rendered mycoplasma-free by effective exposure to antibiotic treatment. The percentage of CD133 positive cells increased again when mycoplasma negative cells were re-infected by Mycoplasma hyorhinis. Conclusions Mycoplasma hyorhinis infection has an important role on the quality of cultured human colon cancer cell lines giving a false positive increase of cancer stem cells fraction characterized by CD133 expression. Possible explanations are (i) the direct involvement of Mycoplasma on CD133 expression or (ii) the selective pressure on a subpopulation of cells characterized by constitutive CD133 expression. In keeping with United Kingdom Coordinating Committee on Cancer Research (UKCCCR) guidelines, the present data indicate the mandatory prerequisite, for investigators involved in human colon cancer research area, of employing mycoplasma-free cell lines in order to avoid the production of non-reproducible or even false data.
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- 2010
39. JAK2V617F mutation persists in blasts and mature cells of transformed- JAK2V617F-positive-myeloproliferative neoplasia: a European Leukemia Net (ENL) study
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Tiziano Barbui, Luigi Gugliotta, Anna Candoni, Giorgia Battipaglia, Paola Rinaldi, Francesco Grimaldi, Giorgina Specchia, Luigi Del Vecchio, Marica Gemei, Ciro R. Rinaldi, Alessandro M. Vannucchi, Fabrizio Pane, Bruno Martino, Hematology and CEINGE, Università degli studi di Napoli Federico II, Hematology, Ospedale di Reggio Calabria, Università degli studi di Bari Aldo Moro (UNIBA), Università degli Studi di Udine - University of Udine [Italie], Ospedale di Reggio Emilia, Università degli Studi di Firenze = University of Florence [Firenze] (UNIFI), Ospedali Riuniti, Rinaldi, Cr, Rinaldi, P, Gemei, M, Grimaldi, F, Battipaglia, G, Del Vecchio, L, Martino, B, Specchia, G, Candoni, A, Gugliotta, L, Vannucchi, Am, Barbui, T, and Pane, Fabrizio
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Adult ,Male ,medicine.medical_specialty ,Bone Marrow Cells ,medicine.disease_cause ,Cohort Studies ,03 medical and health sciences ,0302 clinical medicine ,Myeloproliferative Disorders ,Internal medicine ,hemic and lymphatic diseases ,medicine ,Humans ,Granulocyte Precursor Cells ,Aged ,Aged, 80 and over ,Janus kinase 2 ,Hematology ,biology ,Myeloid leukemia ,food and beverages ,Janus Kinase 2 ,Middle Aged ,medicine.disease ,Flow Cytometry ,3. Good health ,Europe ,Leukemia ,Leukemia, Myeloid, Acute ,medicine.anatomical_structure ,Cell Transformation, Neoplastic ,030220 oncology & carcinogenesis ,Immunology ,Mutation ,biology.protein ,Cancer research ,Medicine ,Female ,Bone marrow ,Carcinogenesis ,030215 immunology - Abstract
International audience; Transformation to acute myeloid leukemia (AML) is a known complication of myeloproliferative neoplasia (MPN). Recent studies reported the high incidence (53%) of JAK2 negative blasts from transformed JAK2V617F-MPN. We collected, by cell sorting, blast cells and mature cells (GRA) from total bone marrow (BM) of 34 patients newly diagnosed of secondary AML. At MPN diagnosis (PMF n = 18; PV n = 9; ET n = 7), JAK2 was mutated in 22 of 34 patients. Twenty of 22 JAK2V617F-MPN (91%) maintained the mutation in blasts and GRA after leukemic switch, while in 2 of 22 patients the selected compartments lost the mutation. Surprisingly we also found the first case of JAK2V617F-AML from a wild type (WT)-MPN. In contrast to the previous study, we conclude that JAK2V617F-MPN yields rarely (9%) a JAK2WT-AML and any JAK2-status modification/persistence involves always the entire BM during leukemic transformation.
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- 2010
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40. Detection of erbB2 copy number variations in plasma of patients with esophageal carcinoma
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Massimo Zollo, Loredana Vecchione, Giancarlo Troncone, Pasqualino De Antonellis, Donatella Montanaro, Immacolata Andolfo, Michele Orditura, Marica Gemei, Achille Iolascon, Fortunato Ciardiello, Giuseppe Petrosino, Mario Capasso, Fernando De Vita, Andolfo, I, Petrosino, Giuseppe, Vecchione, L, De Antonellis, P, Capasso, Mario, Montanaro, D, Gemei, M, Troncone, Giancarlo, Iolascon, Achille, Orditura, M, Ciardiello, F, De Vita, F, Zollo, Massimo, Petrosino, G, DE ANTONELLIS, P, Capasso, M, Troncone, G, Iolascon, A, Orditura, Michele, Ciardiello, Fortunato, DE VITA, Ferdinando, and Zollo, M.
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Male ,Vascular Endothelial Growth Factor A ,Oncology ,Cancer Research ,Esophageal Neoplasms ,erbB2 copy number variation ,Gene Dosage ,0302 clinical medicine ,Surgical oncology ,Copy-number variation ,Early Detection of Cancer ,0303 health sciences ,Reverse Transcriptase Polymerase Chain Reaction ,Middle Aged ,Esophageal cancer ,Prognosis ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,3. Good health ,Cell-free fetal DNA ,030220 oncology & carcinogenesis ,Female ,CTCs ,Research Article ,medicine.medical_specialty ,Sensitivity and Specificity ,Gene dosage ,lcsh:RC254-282 ,Disease-Free Survival ,cell-free DNA ,03 medical and health sciences ,esophageal carcinoma ,Internal medicine ,Biomarkers, Tumor ,Genetics ,medicine ,Carcinoma ,Humans ,Progression-free survival ,Aged ,030304 developmental biology ,business.industry ,DNA ,Genes, erbB-2 ,medicine.disease ,Tumor progression ,business ,prognostic marker - Abstract
Background Mortality is high in patients with esophageal carcinoma as tumors are rarely detected before the disease has progressed to an advanced stage. Here, we sought to isolate cell-free DNA released into the plasma of patients with esophageal carcinoma, to analyze copy number variations of marker genes in the search for early detection of tumor progression. Methods Plasma of 41 patients with esophageal carcinoma was prospectively collected before tumor resection and chemotherapy. Our dataset resulted heterogeneous for clinical data, resembling the characteristics of the tumor. DNA from the plasma was extracted to analyze copy number variations of the erbB2 gene using real-time PCR assays. Results The real-time PCR assays for erbB2 gene showed significant (P = 0.001) copy number variations in the plasma of patients with esophageal carcinoma, as compared to healthy controls with high sensitivity (80%) and specificity (95%). These variations in erbB2 were negatively correlated to the progression free survival of these patients (P = 0.03), and revealed a further risk category stratification of patients with low VEGF expression levels. Conclusion The copy number variation of erbB2 gene from plasma can be used as prognostic marker for early detection of patients at risk of worse clinical outcome in esophageal cancer.
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- 2011
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41. HMGA1 silencing restores normal stem cell characteristics in colon cancer stem cells by increasing p53 levels
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Francesca Puca, Salvatore Pece, Marica Gemei, Antonella Federico, Sabrina Battista, Luigi Del Vecchio, André Uchimura Bastos, Nadia Tosti, Marianna Colamaio, Alfredo Fusco, Puca, F, Colamaio, M, Federico, A, Gemei, M, Tosti, N, Bastos, Au, DEL VECCHIO, Luigi, Pece, S, Battista, S, and Fusco, Alfredo
- Subjects
cancer stem cells ,p53 ,HMGA1 ,Chromatin Immunoprecipitation ,Colorectal cancer ,Blotting, Western ,Fluorescent Antibody Technique ,colon carcinoma ,Biology ,Real-Time Polymerase Chain Reaction ,Transfection ,NUMB ,Downregulation and upregulation ,Cancer stem cell ,Cell Line, Tumor ,In Situ Nick-End Labeling ,medicine ,Humans ,Gene silencing ,HMGA1a Protein ,RNA, Small Interfering ,Cancer ,Flow Cytometry ,medicine.disease ,Immunohistochemistry ,Molecular biology ,Oncology ,Gene Knockdown Techniques ,Colonic Neoplasms ,Neoplastic Stem Cells ,Tumor Suppressor Protein p53 ,Stem cell ,Research Paper - Abstract
// Francesca Puca 1 , Marianna Colamaio 1 , Antonella Federico 1 , Marica Gemei 2 , Nadia Tosti 1 , Andre Uchimura Bastos 1 , Luigi Del Vecchio 2 , Salvatore Pece 3 , Sabrina Battista 1 and Alfredo Fusco 1 1 Istituto di Endocrinologia ed Oncologia Sperimentale - CNR e/o Dipartimento di Medicina Molecolare e Biotecnologie Mediche, Universita degli Studi di Napoli “Federico II”, Naples, Italy 2 CEINGE, Biotecnologie Avanzate, Naples, Italy 3 Istituto Europeo di Oncologia, Milan, Italy Correspondence: Alfredo Fusco, email: // Sabrina Battista, email: // Keywords : HMGA1, cancer stem cells, p53, colon carcinoma, NUMB Received : March 04, 2014 Accepted : April 16, 2014 Published : April 18, 2014 Abstract High-mobility group A1 (HMGA1) proteins are architectural chromatinic proteins, abundantly expressed during embryogenesis and in most cancer tissues, but expressed at low levels or absent in normal adult tissues. Several studies have demonstrated that HMGA1 proteins play a causal role in neoplastic cell transformation. The aim of this study was to investigate the role of these proteins in the control of cancer stem cells (CSCs), which have emerged as a preferred target in cancer therapy, because of their role in cancer recurrence. We observed that HMGA1 is overexpressed in colon tumour stem cell (CTSC) lines compared to normal and colon cancer tissues. We demonstrated that HMGA1 silencing in CTSCs increases stem cell quiescence and reduces self-renewal and sphere-forming efficiency (SFE). The latter, together with the upregulation and asymmetric distribution of NUMB, is indicative of the recovery of an asymmetric division pattern, typical of normal stem cells. We further found that HMGA1 transcriptionally regulates p53, which is known to control the balance between symmetric and asymmetric divisions in CSCs. Therefore, our data indicate a critical role for HMGA1 in regulating both self-renewal and the symmetric/asymmetric division ratio in CSCs, suggesting that blocking HMGA1 function may be an effective anti-cancer therapy.
42. "Molecular Anatomy": a new multi-dimensional hierarchical scaffold analysis tool.
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Manelfi C, Gemei M, Talarico C, Cerchia C, Fava A, Lunghini F, and Beccari AR
- Abstract
The scaffold representation is widely employed to classify bioactive compounds on the basis of common core structures or correlate compound classes with specific biological activities. In this paper, we present a novel approach called "Molecular Anatomy" as a flexible and unbiased molecular scaffold-based metrics to cluster large set of compounds. We introduce a set of nine molecular representations at different abstraction levels, combined with fragmentation rules, to define a multi-dimensional network of hierarchically interconnected molecular frameworks. We demonstrate that the introduction of a flexible scaffold definition and multiple pruning rules is an effective method to identify relevant chemical moieties. This approach allows to cluster together active molecules belonging to different molecular classes, capturing most of the structure activity information, in particular when libraries containing a huge number of singletons are analyzed. We also propose a procedure to derive a network visualization that allows a full graphical representation of compounds dataset, permitting an efficient navigation in the scaffold's space and significantly contributing to perform high quality SAR analysis. The protocol is freely available as a web interface at https://ma.exscalate.eu ., Competing Interests: Competing interestsThe authors declare that they have no competing interests., (© 2021. The Author(s).)
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- 2021
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43. Binding Mode Exploration of B1 Receptor Antagonists' by the Use of Molecular Dynamics and Docking Simulation-How Different Target Engagement Can Determine Different Biological Effects.
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Gemei M, Talarico C, Brandolini L, Manelfi C, Za L, Bovolenta S, Liberati C, Vecchio LD, Russo R, Cerchia C, Allegretti M, and Beccari AR
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- Allosteric Regulation, Allosteric Site, Animals, Bradykinin B1 Receptor Antagonists chemistry, CHO Cells, Cells, Cultured, Cricetinae, Cricetulus, Humans, Protein Binding, Protein Transport, Receptor, Bradykinin B1 metabolism, Bradykinin B1 Receptor Antagonists pharmacology, Molecular Docking Simulation, Molecular Dynamics Simulation, Neuralgia metabolism, Receptor, Bradykinin B1 chemistry
- Abstract
The kinin B1 receptor plays a critical role in the chronic phase of pain and inflammation. The development of B1 antagonists peaked in recent years but almost all promising molecules failed in clinical trials. Little is known about these molecules' mechanisms of action and additional information will be necessary to exploit the potential of the B1 receptor. With the aim of contributing to the available knowledge of the pharmacology of B1 receptors, we designed and characterized a novel class of allosteric non-peptidic inhibitors with peculiar binding characteristics. Here, we report the binding mode analysis and pharmacological characterization of a new allosteric B1 antagonist, DFL20656. We analyzed the binding of DFL20656 by single point mutagenesis and radioligand binding assays and we further characterized its pharmacology in terms of IC
50 , B1 receptor internalization and in vivo activity in comparison with different known B1 antagonists. We highlighted how different binding modes of DFL20656 and a Merck compound (compound 14) within the same molecular pocket can affect the biological and pharmacological properties of B1 inhibitors. DFL20656, by its peculiar binding mode, involving tight interactions with N114, efficiently induced B1 receptor internalization and evoked a long-lasting effect in an in vivo model of neuropathic pain. The pharmacological characterization of different B1 antagonists highlighted the effects of their binding modes on activity, receptor occupancy and internalization. Our results suggest that part of the failure of most B1 inhibitors could be ascribed to a lack of knowledge about target function and engagement.- Published
- 2020
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44. ADPredict: ADP-ribosylation site prediction based on physicochemical and structural descriptors.
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Lo Monte M, Manelfi C, Gemei M, Corda D, and Beccari AR
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- Humans, Machine Learning, Protein Structure, Secondary, ADP-Ribosylation, Computational Biology methods, Models, Molecular, Sequence Analysis, Protein methods, Software
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Motivation: ADP-ribosylation is a post-translational modification (PTM) implicated in several crucial cellular processes, ranging from regulation of DNA repair and chromatin structure to cell metabolism and stress responses. To date, a complete understanding of ADP-ribosylation targets and their modification sites in different tissues and disease states is still lacking. Identification of ADP-ribosylation sites is required to discern the molecular mechanisms regulated by this modification. This motivated us to develop a computational tool for the prediction of ADP-ribosylated sites., Results: Here, we present ADPredict, the first dedicated computational tool for the prediction of ADP-ribosylated aspartic and glutamic acids. This predictive algorithm is based on (i) physicochemical properties, (ii) in-house designed secondary structure-related descriptors and (iii) three-dimensional features of a set of human ADP-ribosylated proteins that have been reported in the literature. ADPredict was developed using principal component analysis and machine learning techniques; its performance was evaluated both internally via intensive bootstrapping and in predicting two external experimental datasets. It outperformed the only other available ADP-ribosylation prediction tool, ModPred. Moreover, a novel secondary structure descriptor, HM-ratio, was introduced and successfully contributed to the model development, thus representing a promising tool for bioinformatics studies, such as PTM prediction., Availability and Implementation: ADPredict is freely available at www.ADPredict.net., Supplementary Information: Supplementary data are available at Bioinformatics online.
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- 2018
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45. Publisher Correction: Novel selective, potent naphthyl TRPM8 antagonists identified through a combined ligand- and structure-based virtual screening approach.
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Beccari AR, Gemei M, Lo Monte M, Menegatti N, Fanton M, Pedretti A, Bovolenta S, Nucci C, Molteni A, Rossignoli A, Brandolini L, Taddei A, Za L, Liberati C, and Vistoli G
- Abstract
A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has been fixed in the paper.
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- 2018
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46. Novel selective, potent naphthyl TRPM8 antagonists identified through a combined ligand- and structure-based virtual screening approach.
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Beccari AR, Gemei M, Lo Monte M, Menegatti N, Fanton M, Pedretti A, Bovolenta S, Nucci C, Molteni A, Rossignoli A, Brandolini L, Taddei A, Za L, Liberati C, and Vistoli G
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- Animals, Cell Line, Dose-Response Relationship, Drug, High-Throughput Screening Assays, Humans, Models, Molecular, Molecular Conformation, Molecular Docking Simulation, Molecular Dynamics Simulation, Molecular Structure, Mutation, Quantitative Structure-Activity Relationship, Rats, TRPM Cation Channels genetics, Urinary Bladder, Overactive drug therapy, Urinary Bladder, Overactive etiology, Urinary Bladder, Overactive metabolism, Drug Discovery methods, Ligands, TRPM Cation Channels antagonists & inhibitors
- Abstract
Transient receptor potential melastatin 8 (TRPM8), a nonselective cation channel, is the predominant mammalian cold temperature thermosensor and it is activated by cold temperatures and cooling compounds, such as menthol and icilin. Because of its role in cold allodynia, cold hyperalgesia and painful syndromes TRPM8 antagonists are currently being pursued as potential therapeutic agents for the treatment of pain hypersensitivity. Recently TRPM8 has been found in subsets of bladder sensory nerve fibres, providing an opportunity to understand and treat chronic hypersensitivity. However, most of the known TRPM8 inhibitors lack selectivity, and only three selective compounds have reached clinical trials to date. Here, we applied two virtual screening strategies to find new, clinics suitable, TRPM8 inhibitors. This strategy enabled us to identify naphthyl derivatives as a novel class of potent and selective TRPM8 inhibitors. Further characterization of the pharmacologic properties of the most potent compound identified, compound 1, confirmed that it is a selective, competitive antagonist inhibitor of TRPM8. Compound 1 also proved itself active in a overreactive bladder model in vivo. Thus, the novel naphthyl derivative compound identified here could be optimized for clinical treatment of pain hypersensitivity in bladder disorders but also in different other pathologies.
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- 2017
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47. TRAP1 regulates stemness through Wnt/β-catenin pathway in human colorectal carcinoma.
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Lettini G, Sisinni L, Condelli V, Matassa DS, Simeon V, Maddalena F, Gemei M, Lopes E, Vita G, Del Vecchio L, Esposito F, and Landriscina M
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- Activated-Leukocyte Cell Adhesion Molecule metabolism, Clone Cells, Colorectal Neoplasms genetics, Down-Regulation, Gene Expression Regulation, Neoplastic, Gene Silencing, HCT116 Cells, Humans, Intestinal Mucosa metabolism, Intestinal Mucosa pathology, Phenotype, Phosphorylation, Protein Binding, Ubiquitination, Up-Regulation, beta Catenin metabolism, Colorectal Neoplasms metabolism, Colorectal Neoplasms pathology, HSP90 Heat-Shock Proteins metabolism, Neoplastic Stem Cells metabolism, Neoplastic Stem Cells pathology, Wnt Signaling Pathway
- Abstract
Colorectal carcinoma (CRC) is a common cause of cancer-related death worldwide. Indeed, treatment failures are triggered by cancer stem cells (CSCs) that give rise to tumor repopulation upon initial remission. Thus, the role of the heat shock protein TRAP1 in stemness was investigated in CRC cell lines and human specimens, based on its involvement in colorectal carcinogenesis, through regulation of apoptosis, protein homeostasis and bioenergetics. Strikingly, co-expression between TRAP1 and stem cell markers was observed in stem cells located at the bottom of intestinal crypts and in CSCs sorted from CRC cell lines. Noteworthy, TRAP1 knockdown reduced the expression of stem cell markers and impaired colony formation, being the CSC phenotype and the anchorage-independent growth conserved in TRAP1-rich cancer cells. Consistently, the gene expression profiling of HCT116 cells showed that TRAP1 silencing results in the loss of the stem-like signature with acquisition of a more-differentiated phenotype and the downregulation of genes encoding for activating ligands and target proteins of Wnt/β-catenin pathway. Mechanistically, TRAP1 maintenance of stemness is mediated by the regulation of Wnt/β-catenin signaling, through the modulation of the expression of frizzled receptor ligands and the control of β-catenin ubiquitination/phosphorylation. Remarkably, TRAP1 is associated with higher expression of β-catenin and several Wnt/β-catenin target genes in human CRCs, thus supporting the relevance of TRAP1 regulation of β-catenin in human pathology. This study is the first demonstration that TRAP1 regulates stemness and Wnt/β-catenin pathway in CRC and provides novel landmarks in cancer biology and therapeutics.
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- 2016
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48. HMGA1 silencing reduces stemness and temozolomide resistance in glioblastoma stem cells.
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Colamaio M, Tosti N, Puca F, Mari A, Gattordo R, Kuzay Y, Federico A, Pepe A, Sarnataro D, Ragozzino E, Raia M, Hirata H, Gemei M, Mimori K, Del Vecchio L, Battista S, and Fusco A
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- Antineoplastic Agents, Alkylating pharmacology, Brain Neoplasms drug therapy, Brain Neoplasms genetics, Cell Line, Tumor, Dacarbazine analogs & derivatives, Dacarbazine pharmacology, Drug Resistance, Neoplasm, Gene Knockdown Techniques, Gene Silencing, Glioblastoma drug therapy, Glioblastoma pathology, Humans, RNA, Small Interfering genetics, Temozolomide, Brain Neoplasms pathology, Glioblastoma genetics, HMGA1a Protein genetics, Neoplastic Stem Cells metabolism
- Abstract
Objective: Glioblastoma multiforme (GBM) develops from a small subpopulation of stem-like cells, which are endowed with the ability to self-renew, proliferate and give rise to progeny of multiple neuroepithelial lineages. These cells are resistant to conventional chemo- and radiotherapy and are hence also responsible for tumor recurrence. HMGA1 overexpression has been shown to correlate with proliferation, invasion, and angiogenesis of GBMs and to affect self-renewal of cancer stem cells from colon cancer. The role of HMGA1 in GBM tumor stem cells is not completely understood., Research Design and Methods: We have investigated the role of HMGA1 in brain tumor stem cell (BTSC) self-renewal, stemness and resistance to temozolomide by shRNA- mediated HMGA1 silencing., Results: We first report that HMGA1 is overexpressed in a subset of BTSC lines from human GBMs. Then, we show that HMGA1 knockdown reduces self-renewal, sphere forming efficiency and stemness, and sensitizes BTSCs to temozolomide. Interestingly, HMGA1 silencing also leads to reduced tumor initiation ability in vivo., Conclusions: These results demonstrate a pivotal role of HMGA1 in cancer stem cell gliomagenesis and endorse HMGA1 as a suitable target for CSC-specific GBM therapy.
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- 2016
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49. CD26-positive/CD326-negative circulating cancer cells as prognostic markers for colorectal cancer recurrence.
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Lieto E, Galizia G, Orditura M, Romano C, Zamboli A, Castellano P, Mabilia A, Auricchio A, DE Vita F, and Gemei M
- Abstract
The present study evaluated the presence and clinical relevance of a cluster of differentiation (CD)26
+ /CD326- subset of circulating tumor cells (CTCs) in pre- and post-operative blood samples of colorectal cancer patients, who had undergone curative or palliative intervention, in order to find a novel prognostic factor for patient management and follow-up. In total, 80 colorectal cancer patients, along with 25 healthy volunteers were included. The easily transferable methodology of flow cytometry, along with multiparametric antibody staining were used to selectively evaluate CD26+ /CD326- CTCs in the peripheral blood samples of colorectal cancer patients. The multiparametric selection allowed any enrichment methods to be avoided thus rendering the whole procedure suitable for clinical routine. The presence of CD26+ /CD326- cells was higher in advanced Dukes' stages and was significantly associated with poor survival and high recurrence rates. Relapsing and non-surviving patients showed the highest number of CD26+ /CD326- CTCs. High pre-operative levels of CD26+ /CD326- CTCs correctly predicted tumor relapse in 44.4% of the cases, while 69% of post-operative CD26+ /CD326- CTC-positive patients experienced cancer recurrence, with a test accuracy of 88.8%. By contrast, post-operative CD26+ /CD326- CTC-negative patients showed an increase in the three-year progression-free survival rate of 86%, along with a reduced risk of tumor relapse of >90%. In conclusion, CD26+ /CD326- CTCs are an independent prognostic factor for tumor recurrence rate in multivariate analysis, suggesting that their evaluation could be an additional factor for colorectal cancer recurrence risk evaluation in patient management.- Published
- 2015
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50. miR-142-3p down-regulation contributes to thyroid follicular tumorigenesis by targeting ASH1L and MLL1.
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Colamaio M, Puca F, Ragozzino E, Gemei M, Decaussin-Petrucci M, Aiello C, Bastos AU, Federico A, Chiappetta G, Del Vecchio L, Torregrossa L, Battista S, and Fusco A
- Subjects
- Adenocarcinoma, Follicular metabolism, Adenocarcinoma, Follicular pathology, Adenoma genetics, Adenoma metabolism, Adenoma pathology, Carcinogenesis metabolism, Carcinogenesis pathology, Cell Proliferation genetics, DNA-Binding Proteins metabolism, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, Histone-Lysine N-Methyltransferase, Humans, MicroRNAs metabolism, Myeloid-Lymphoid Leukemia Protein metabolism, Thyroid Gland metabolism, Thyroid Gland pathology, Thyroid Neoplasms metabolism, Thyroid Neoplasms pathology, Transcription Factors metabolism, Adenocarcinoma, Follicular genetics, Carcinogenesis genetics, DNA-Binding Proteins genetics, Down-Regulation, MicroRNAs genetics, Myeloid-Lymphoid Leukemia Protein genetics, Thyroid Neoplasms genetics, Transcription Factors genetics
- Abstract
Context: A previous micro-RNA expression profile of thyroid follicular adenomas identified miR-142 precursor among the miRNAs downregulated in the neoplastic tissues compared to normal thyroid gland., Objective: The aim of this work has been to assess the expression of miR-142-3p in a large panel of follicular thyroid adenomas and carcinomas and evaluate its effect on thyroid cell proliferation and target expression., Design: The expression of miR-142-3p was analyzed by qRT-PCR in thyroid follicular adenomas and carcinomas, compared to normal thyroids. MiR-142-3p expression was restored in WRO cells and the effects on cell proliferation and target expression were evaluated., Results: Here we show that miR-142-3p is downregulated in FTAs, FTCs, and FVPTCs. MiR-142-3p was demonstrated to reduce the proliferation rate of WRO and FTC133 cells, supporting its tumor suppressor role in thyroid cancerogenesis. Moreover, this microRNA was able to downregulate the expression of ASH1L and MLL1, by direct and indirect mechanisms, respectively. Consistently, an inverse correlation between miR-142-3p expression and ASH1L and MLL1 proteins was found in thyroid follicular adenomas and carcinomas. ASH1L and MLL1, which belong to the Trithorax group (TrxG) proteins and are major regulators of Homeobox gene expression, maintain active target gene transcription by histone 3 lysine 4 methylation. Interestingly, we found that FTCs and FTC cell lines express tumor specific, shorter forms of the two proteins. The capability of miR-142-3p to modulate the levels of these tumor-associated forms and to reactivate thyroid-specific Hox gene expression, likely contributes to its tumor suppressive function., Conclusions: These data demonstrate that miR-142-3p downregulation has a role in thyroid tumorigenesis, by regulating ASH1L and MLL1.
- Published
- 2015
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