1,416 results on '"Geerlings, P."'
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2. Symmetry and reactivity of $\pi$-systems in electric and magnetic fields: a perspective from conceptual DFT
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Wibowo-Teale, Meilani, Huynh, Bang C., Wibowo-Teale, Andrew M., De Proft, Frank, and Geerlings, Paul
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Physics - Chemical Physics - Abstract
[Abridged] The extension of conceptual DFT to include external fields in chemical systems is utilised to investigate the effects of strong magnetic fields on the electronic charge distribution and its consequences on the reactivity of $\pi$-systems. Formaldehyde, H$_2$CO, is considered as a prototypical example and current-DFT calculations are used to evaluate the electric dipole moment together with the electron density and the Fukui functions, which provide insight into how H$_2$CO behaves chemically in a magnetic field. In particular, the symmetries of these quantities are analysed based on group, representation, and corepresentation theories using QSym$^2$. This allows us to leverage the simple symmetry constraints on the macroscopic electric dipole moments to make profound predictions on the more nuanced symmetry transformation properties of the microscopic frontier MOs, electron densities, and Fukui functions. This is especially useful for complex-valued MOs in magnetic fields whose detailed symmetry analyses lead us to define the new concepts of modular and phasal symmetry breaking. Through these, the connection between the vanishing constraints on the electric dipole moments and the symmetry of electron densities and Fukui functions can be formalised, and the inability of the magnetic field in all three orientations considered to induce asymmetry with respect to the molecular plane can be understood from a molecular perspective. Furthermore, the detailed forms of the Fukui functions reveal remarkable reversals in the direction of the C=O dipole moment in the presence of a parallel or perpendicular magnetic field, which can be attributed to the mixing between frontier MOs due to their subduced symmetries in magnetic fields. The findings in this work are also discussed in the wider context of a long-standing debate on the possibility to create enantioselectivity by external fields., Comment: Main text: 26 pages (two-column), 7 figures, 9 tables; Supplementary information: 7 pages (one-column), 4 figures, 2 tables
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- 2024
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3. “Catheter replacement in catheter-associated urinary tract infection: current state of evidence “
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Westgeest, Annette C., van Uhm, Janneke I.M., Pattacini, Laura, Rozemeijer, Wouter, Schout, Barbara M.A., Groenwold, Rolf H.H., Geerlings, Suzanne E., and Lambregts, Merel M.C.
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- 2024
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4. Unveiling the invisible: a qualitative interview study on the impact of young onset Parkinson’s disease on (ex-)partners
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Kapelle, Willanka Mariëlle, Geerlings, Angelika D., Mutsaers, Inge, Bloem, Bastiaan R., Meinders, Marjan J., and Post, Bart
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- 2024
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5. Microvascular Dysfunction and Whole-Brain White Matter Connectivity: The Maastricht Study.
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Beran, Magdalena, van Gennip, April, Stehouwer, Coen, Jansen, Jacobus, Gupta, Monideepa, Houben, Alfons, Berendschot, Tos, Webers, Carroll, Wesselius, Anke, Schalkwijk, Casper, Backes, Walter, de Jong, Joost, van der Kallen, Carla, van Greevenbroek, Marleen, Köhler, Sebastian, Vonk, Jet, Geerlings, Mirjam, Schram, Miranda, and van Sloten, Thomas
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cerebral microcirculation ,cohort ,diffusion tensor imaging ,microvascular dysfunction ,white matter connectivity ,Humans ,Female ,Middle Aged ,Aged ,Male ,White Matter ,Cross-Sectional Studies ,Brain ,Diffusion Magnetic Resonance Imaging ,Biomarkers - Abstract
BACKGROUND: Microvascular dysfunction is involved in the development of various cerebral disorders. It may contribute to these disorders by disrupting white matter tracts and altering brain connectivity, but evidence is scarce. We investigated the association between multiple biomarkers of microvascular function and whole-brain white matter connectivity. METHODS AND RESULTS: Cross-sectional data from The Maastricht Study, a Dutch population-based cohort (n=4326; age, 59.4±8.6 years; 49.7% women). Measures of microvascular function included urinary albumin excretion, central retinal arteriolar and venular calibers, composite scores of flicker light-induced retinal arteriolar and venular dilation, and plasma biomarkers of endothelial dysfunction (intercellular adhesion molecule-1, vascular cell adhesion molecule-1, E-selectin, and von Willebrand factor). White matter connectivity was calculated from 3T diffusion magnetic resonance imaging to quantify the number (average node degree) and organization (characteristic path length, global efficiency, clustering coefficient, and local efficiency) of white matter connections. A higher plasma biomarkers of endothelial dysfunction composite score was associated with a longer characteristic path length (β per SD, 0.066 [95% CI, 0.017-0.114]) after adjustment for sociodemographic, lifestyle, and cardiovascular factors but not with any of the other white matter connectivity measures. After multiple comparison correction, this association was nonsignificant. None of the other microvascular function measures were associated with any of the connectivity measures. CONCLUSIONS: These findings suggest that microvascular dysfunction as measured by indirect markers is not associated with whole-brain white matter connectivity.
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- 2024
6. YELLOW RoUTIne prospective cohort study protocol: insight in the dynamics of bacteria in the elderly bladder
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Wang, Ruo Chen, Van Buul, Laura W., Geerlings, Suzanne E., De Greeff, Sabine C., Haenen, Anja, Halonen, Kati, Notermans, Daan W., Reuland, E. Ascelijn, Smalbrugge, Martin, Twisk, Jos W. R., and Schneeberger, Caroline
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- 2024
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7. Association of amyloid-beta with depression or depressive symptoms in older adults without dementia: a systematic review and meta-analysis
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Twait, Emma L., Wu, Jen-Hao, Kamarioti, Maria, Basten, Maartje, van der Flier, Wiesje M., Gerritsen, Lotte, and Geerlings, Mirjam I.
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- 2024
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8. Assessing the validity of a Parkinson’s care evaluation: the PRIME-NL study
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Gelissen, Liza M. Y., van den Bergh, Robin, Talebi, Amir H., Geerlings, Angelika D., Maas, Bart R., Burgler, Myrthe M., Kroeze, Yvet, Smink, Agnes, Bloem, Bastiaan R., Munneke, Marten, Ben-Shlomo, Yoav, and Darweesh, Sirwan K. L.
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- 2024
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9. Sex differences in modifiable risk factors for stroke incidence and recurrence: the UCC-SMART study
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Rissanen, Ina, Basten, Maartje, Exalto, Lieza G., Peters, Sanne A. E., Visseren, Frank L. J., and Geerlings, Mirjam I.
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- 2024
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10. Semantic item-level metrics relate to future memory decline beyond existing cognitive tests in older adults without dementia.
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Vonk, Jet, Geerlings, Mirjam, Avila-Rieger, Justina, Qian, Carolyn, Schupf, Nicole, Mayeux, Richard, Brickman, Adam, and Manly, Jennifer
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Humans ,Aged ,Aged ,80 and over ,Semantics ,Aging ,Benchmarking ,Alzheimer Disease ,Neuropsychological Tests ,Memory ,Episodic ,Memory Disorders ,Cognitive Dysfunction - Abstract
In normal aging, the cognitive domain of semantic memory remains preserved, while the domain of episodic memory declines to some extent. In Alzheimers disease dementia, both semantic and episodic memory become impaired early in the disease process. Given the need to develop sensitive and accessible cognitive markers for early detection of dementia, we investigated among older adults without dementia whether item-level metrics of semantic fluency related to episodic memory decline above and beyond existing neuropsychological measures and total fluency score. Participants were drawn from the community-based Washington Heights-Inwood Columbia Aging Project cohort (N = 583 English speakers, Mage = 76.3 ± 6.8) followed up to five visits across up to 11 years. We examined the association of semantic fluency metrics with subsequent declines in memory performance using latent growth curve models covaried for age and recruitment wave. Results showed that item-level metrics (e.g., lexical frequency, age of acquisition, and semantic neighborhood density) were associated with a decline in episodic memory-even when covarying for other cognitive tests-while the standard total score was not. Moderation analyses showed that the relationship of semantic fluency metrics with memory decline did not differ across race, sex/gender, or education. In conclusion, item-level data hold a wealth of information with potential to reveal subtle semantic memory impairment, which tracks with episodic memory impairment, among older adults without dementia beyond existing neuropsychological measures. Implementation of psycholinguistic metrics may point to cognitive tools that have better prognostic value or are more sensitive to cognitive change in the context of clinical trials or observational studies. (PsycInfo Database Record (c) 2023 APA, all rights reserved).
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- 2023
11. Chapter New Insights and Horizons from the Linear Response Function in Conceptual DFT
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Stuyver, Thijs, De Proft, Frank, Fias, Stijn, Ayers, Paul, and Geerlings, P.
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conceptual DFT, linear response function, nearsightedness of electronic matter, alchemical derivatives, molecular conductivity ,bic Book Industry Communication::P Mathematics & science::PN Chemistry - Abstract
An overview is given of our recent work on the linear response function (LRF) χrr′ and its congener, the softness kernel srr′, the second functional derivatives of the energy E and the grand potential Ω with respect to the external potential at constant N and μ, respectively. In a first section on new insights into the LRF in the context of conceptual DFT, the mathematical and physical properties of these kernels are scrutinized through the concavity of the E=ENv and Ω=Ωμv functionals in vr resulting, for example, in the negative semidefiniteness of χ. As an example of the analogy between the CDFT functionals and thermodynamic state functions, the analogy between the stability conditions of the macroscopic Gibbs free energy function and the concavity conditions for Ω is established, yielding a relationship between the global and local softness and the softness kernel. The role of LRF and especially the softness kernel in Kohn’s nearsightedness of electronic matter (NEM) principle is highlighted. The first numerical results on the softness kernel for molecules are reported and scrutinized for their nearsightedness, reconciling the physicists’ NEM view and the chemists’ transferability paradigm. The extension of LRF in the context of spin polarized conceptual DFT is presented. Finally, two sections are devoted to ‘new horizons’ for the LRF. The role of LRF in (evaluating) alchemical derivatives is stressed, the latter playing a promising role in exploring the chemical compound space. Examples for the transmutation of N2 and the CC→BN substitution pattern in 2D and 3D carbocyclic systems illustrate the computational efficiency of the use of alchemical derivatives in exploring nearest neighbours in the chemical compound space. As a second perspective, the role of LRF in evaluating and interpreting molecular conductivity is described. Returning to its forerunner, Coulson’s atom-atom polarizability, it is shown how in conjugated π systems (and within certain approximations) a remarkable integral-integrand relationship between the atom-atom polarizability and the transmission probability between the atoms/contacts exists, leading to similar trends in both properties. A simple selection rule for transmission probability in alternating hydrocarbons is derived based on the sign of the atom-atom polarizability.
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- 2019
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12. MixLacune: Segmentation of lacunes of presumed vascular origin
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Kutnar, Denis, van der Velden, Bas H. M., Sanguesa, Marta Girones, Geerlings, Mirjam I., Biesbroek, J. Matthijs, and Kuijf, Hugo J.
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Electrical Engineering and Systems Science - Image and Video Processing ,Computer Science - Computer Vision and Pattern Recognition - Abstract
Lacunes of presumed vascular origin are fluid-filled cavities of between 3 - 15 mm in diameter, visible on T1 and FLAIR brain MRI. Quantification of lacunes relies on manual annotation or semi-automatic / interactive approaches; and almost no automatic methods exist for this task. In this work, we present a two-stage approach to segment lacunes of presumed vascular origin: (1) detection with Mask R-CNN followed by (2) segmentation with a U-Net CNN. Data originates from Task 3 of the "Where is VALDO?" challenge and consists of 40 training subjects. We report the mean DICE on the training set of 0.83 and on the validation set of 0.84. Source code is available at: https://github.com/hjkuijf/MixLacune . The docker container hjkuijf/mixlacune can be pulled from https://hub.docker.com/r/hjkuijf/mixlacune ., Comment: Submitted to the "Where is VALDO?" challenge, MICCAI 2021
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- 2021
13. What Drives Task Performance in Animal Fluency in Individuals Without Dementia? The SMART-MR Study
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Adrià Rofes, Magdalena Beran, Roel Jonkers, Mirjam I. Geerlings, and Jet M. J. Vonk
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Purpose: In this study, we aim to understand whether and how performance in animal fluency (i.e., total correct word count) relates to linguistic levels and/or executive functions by looking at sequence information and item-level metrics (i.e., clusters, switches, and word properties). Method: Seven hundred thirty-one Dutch-speaking individuals without dementia from the Second Manifestations of ARTerial disease-Magnetic Resonance study responded to an animal fluency task (120 s). We obtained cluster size and number of switches for the task, and eight different word properties for each correct word produced. We detected variables that determine total word count with random forests, and used conditional inference trees to assess points along the scales of such variables, at which total word count changes significantly. Results: Number of switches, average cluster size, lexical decision response times, word frequency, and concreteness determined total correct word count in animal fluency. People who produced more correct words produced more switches and bigger clusters. People who produced fewer words produced fewer switches and more frequent words. Conclusions: Concurrent with existing literature, individuals without dementia rely on language and executive functioning to produce words in animal fluency. The novelty of our work is that such results were shown based on a data-driven approach using sequence information and item-level metrics.
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- 2023
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14. Predictors of Incident Mild Cognitive Impairment and Its Course in a Diverse Community-Based Population
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Angevaare, Milou J, Vonk, Jet MJ, Bertola, Laiss, Zahodne, Laura, Watson, Caitlin Wei-Ming, Boehme, Amelia, Schupf, Nicole, Mayeux, Richard, Geerlings, Mirjam I, and Manly, Jennifer J
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Biomedical and Clinical Sciences ,Neurosciences ,Clinical Sciences ,Acquired Cognitive Impairment ,Dementia ,Aging ,Neurodegenerative ,Alzheimer's Disease ,Prevention ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Brain Disorders ,Health Disparities ,Cerebrovascular ,Alzheimer's Disease Related Dementias (ADRD) ,Behavioral and Social Science ,Mental Health ,2.1 Biological and endogenous factors ,4.1 Discovery and preclinical testing of markers and technologies ,Neurological ,Cognitive Dysfunction ,Cohort Studies ,Disease Progression ,Humans ,Incidence ,Proportional Hazards Models ,Risk Factors ,Cognitive Sciences ,Neurology & Neurosurgery ,Clinical sciences - Abstract
Background and objectivesTo investigate sociodemographic and medical predictors of incident mild cognitive impairment (MCI) and subsequent course of MCI at follow-up, including sustained MCI diagnosis, classification as cognitively normal, and progression to dementia.MethodsWithin a community-based cohort, diagnoses of MCI were made with a published algorithm. Diagnosis of dementia was based on clinical consensus. Cox regressions estimated hazard ratios of incident MCI associated with several predictors. Modified Poisson regressions estimated relative risks associated with predictors of diagnostic status at follow-up after incidence.ResultsAmong 2,903 cognitively normal participants at baseline, 752 developed MCI over an average of 6.3 (SD 4.5) years (incidence rate 56 per 1,000 person-years). Presence of APOE ε4 and higher medical burden increased risk of incident MCI, while more years of education, more leisure activities, and higher income decreased this risk. Of the incident MCI cases, after an average of 2.4 years of follow-up, 12.9% progressed to dementia, 9.6% declined in functioning and did not meet the algorithmic criteria for MCI but did not meet the clinical criteria for dementia, 29.6% continued to meet MCI criteria, and 47.9% no longer met MCI criteria. Multidomain MCI, presence of APOE ε4, depressive symptoms, and antidepressant use increased the risk of progression to dementia.DiscussionThis community-based study showed that almost half of the individuals with incident MCI diagnoses were classified as cognitively normal at follow-up. Predictors of incident MCI demonstrably differed from those of subsequent MCI course; these findings can refine expectations for cognitive and functional course of those presenting with MCI.
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- 2022
15. Chronic neuropsychiatric sequelae of SARS‐CoV‐2: Protocol and methods from the Alzheimer's Association Global Consortium
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Erausquin, Gabriel A, Snyder, Heather, Brugha, Traolach S, Seshadri, Sudha, Carrillo, Maria, Sagar, Rajesh, Huang, Yueqin, Newton, Charles, Tartaglia, Carmela, Teunissen, Charlotte, Håkanson, Krister, Akinyemi, Rufus, Prasad, Kameshwar, D'Avossa, Giovanni, Gonzalez‐Aleman, Gabriela, Hosseini, Akram, Vavougios, George D, Sachdev, Perminder, Bankart, John, Mors, Niels Peter Ole, Lipton, Richard, Katz, Mindy, Fox, Peter T, Katshu, Mohammad Zia, Iyengar, M Sriram, Weinstein, Galit, Sohrabi, Hamid R, Jenkins, Rachel, Stein, Dan J, Hugon, Jacques, Mavreas, Venetsanos, Blangero, John, Cruchaga, Carlos, Krishna, Murali, Wadoo, Ovais, Becerra, Rodrigo, Zwir, Igor, Longstreth, William T, Kroenenberg, Golo, Edison, Paul, Mukaetova‐Ladinska, Elizabeta, Staufenberg, Ekkehart, Figueredo‐Aguiar, Mariana, Yécora, Agustín, Vaca, Fabiana, Zamponi, Hernan P, Re, Vincenzina Lo, Majid, Abdul, Sundarakumar, Jonas, Gonzalez, Hector M, Geerlings, Mirjam I, Skoog, Ingmar, Salmoiraghi, Alberto, Boneschi, Filippo Martinelli, Patel, Vibuthi N, Santos, Juan M, Arroyo, Guillermo Rivera, Moreno, Antonio Caballero, Felix, Pascal, Gallo, Carla, Arai, Hidenori, Yamada, Masahito, Iwatsubo, Takeshi, Sharma, Malveeka, Chakraborty, Nandini, Ferreccio, Catterina, Akena, Dickens, Brayne, Carol, Maestre, Gladys, Blangero, Sarah Williams, Brusco, Luis I, Siddarth, Prabha, Hughes, Timothy M, Zuñiga, Alfredo Ramírez, Kambeitz, Joseph, Laza, Agustin Ruiz, Allen, Norrina, Panos, Stella, Merrill, David, Ibáñez, Agustín, Tsuang, Debby, Valishvili, Nino, Shrestha, Srishti, Wang, Sophia, Padma, Vasantha, Anstey, Kaarin J, Ravindrdanath, Vijayalakshmi, Blennow, Kaj, Mullins, Paul, Łojek, Emilia, Pria, Anand, Mosley, Thomas H, Gowland, Penny, Girard, Timothy D, Bowtell, Richard, and Vahidy, Farhaan S
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Neurosciences ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Brain Disorders ,Alzheimer's Disease ,Infectious Diseases ,Emerging Infectious Diseases ,Clinical Research ,Dementia ,Neurodegenerative ,Prevention ,Acquired Cognitive Impairment ,Aging ,Aetiology ,2.1 Biological and endogenous factors ,Neurological ,Good Health and Well Being ,cognitive impairment ,dementia ,neuropsychiatric sequelae ,predictors ,SARS-CoV-2 ,SARS‐CoV‐2 - Abstract
IntroductionCoronavirus disease 2019 (COVID-19) has caused >3.5 million deaths worldwide and affected >160 million people. At least twice as many have been infected but remained asymptomatic or minimally symptomatic. COVID-19 includes central nervous system manifestations mediated by inflammation and cerebrovascular, anoxic, and/or viral neurotoxicity mechanisms. More than one third of patients with COVID-19 develop neurologic problems during the acute phase of the illness, including loss of sense of smell or taste, seizures, and stroke. Damage or functional changes to the brain may result in chronic sequelae. The risk of incident cognitive and neuropsychiatric complications appears independent from the severity of the original pulmonary illness. It behooves the scientific and medical community to attempt to understand the molecular and/or systemic factors linking COVID-19 to neurologic illness, both short and long term.MethodsThis article describes what is known so far in terms of links among COVID-19, the brain, neurological symptoms, and Alzheimer's disease (AD) and related dementias. We focus on risk factors and possible molecular, inflammatory, and viral mechanisms underlying neurological injury. We also provide a comprehensive description of the Alzheimer's Association Consortium on Chronic Neuropsychiatric Sequelae of SARS-CoV-2 infection (CNS SC2) harmonized methodology to address these questions using a worldwide network of researchers and institutions.ResultsSuccessful harmonization of designs and methods was achieved through a consensus process initially fragmented by specific interest groups (epidemiology, clinical assessments, cognitive evaluation, biomarkers, and neuroimaging). Conclusions from subcommittees were presented to the whole group and discussed extensively. Presently data collection is ongoing at 19 sites in 12 countries representing Asia, Africa, the Americas, and Europe.DiscussionThe Alzheimer's Association Global Consortium harmonized methodology is proposed as a model to study long-term neurocognitive sequelae of SARS-CoV-2 infection.Key pointsThe following review describes what is known so far in terms of molecular and epidemiological links among COVID-19, the brain, neurological symptoms, and AD and related dementias (ADRD)The primary objective of this large-scale collaboration is to clarify the pathogenesis of ADRD and to advance our understanding of the impact of a neurotropic virus on the long-term risk of cognitive decline and other CNS sequelae. No available evidence supports the notion that cognitive impairment after SARS-CoV-2 infection is a form of dementia (ADRD or otherwise). The longitudinal methodologies espoused by the consortium are intended to provide data to answer this question as clearly as possible controlling for possible confounders. Our specific hypothesis is that SARS-CoV-2 triggers ADRD-like pathology following the extended olfactory cortical network (EOCN) in older individuals with specific genetic susceptibility.The proposed harmonization strategies and flexible study designs offer the possibility to include large samples of under-represented racial and ethnic groups, creating a rich set of harmonized cohorts for future studies of the pathophysiology, determinants, long-term consequences, and trends in cognitive aging, ADRD, and vascular disease.We provide a framework for current and future studies to be carried out within the Consortium. and offers a "green paper" to the research community with a very broad, global base of support, on tools suitable for low- and middle-income countries aimed to compare and combine future longitudinal data on the topic.The Consortium proposes a combination of design and statistical methods as a means of approaching causal inference of the COVID-19 neuropsychiatric sequelae. We expect that deep phenotyping of neuropsychiatric sequelae may provide a series of candidate syndromes with phenomenological and biological characterization that can be further explored. By generating high-quality harmonized data across sites we aim to capture both descriptive and, where possible, causal associations.
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- 2022
16. The linear response function as a descriptor of non-covalent interactions: hydrogen and halogen bonds
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Geerlings, Paul, Van Alsenoy, Christian, and De Proft, Frank
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- 2024
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17. Understanding the effect of an educational intervention to optimize HIV testing strategies in primary care in Amsterdam – results of a mixed-methods study
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Bogers, Saskia, Nieuwkerk, Pythia, van Dijk, Nynke, Schim van der Loeff, Maarten, Geerlings, Suzanne, and van Bergen, Jan
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- 2023
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18. Dementia prediction in the general population using clinically accessible variables: a proof-of-concept study using machine learning. The AGES-Reykjavik study
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Twait, Emma L., Andaur Navarro, Constanza L., Gudnason, Vilmunur, Hu, Yi-Han, Launer, Lenore J., and Geerlings, Mirjam I.
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- 2023
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19. Caregiver burden in Parkinson’s disease: a mixed-methods study
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Geerlings, Angelika D., Kapelle, Willanka M., Sederel, Charlotte J., Tenison, Emma, Wijngaards-Berenbroek, Hilde, Meinders, Marjan J., Munneke, Marten, Ben-Shlomo, Yoav, Bloem, Bastiaan R., and Darweesh, Sirwan K. L.
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- 2023
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20. Determinants of coping styles of people with Parkinson’s Disease
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Prins, Eva M., Geerlings, Angelika D., Ben-Shlomo, Yoav, Meinders, Marjan J., Bloem, Bastiaan R., and Darweesh, Sirwan K. L.
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- 2023
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21. Healthcare-associated infections in Dutch hospitals during the COVID-19 pandemic
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Verberk, Janneke D. M., van der Kooi, Tjallie I. I., Kampstra, Nynke A., Reimes, Naomi, van Rooden, Stephanie M., Hopmans, Titia E. M., Geerlings, Suzanne E., and de Greeff, Sabine C.
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- 2023
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22. Dementia risk in the general population: large-scale external validation of prediction models in the AGES-Reykjavik study
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Vonk, Jet MJ, Greving, Jacoba P, Gudnason, Vilmundur, Launer, Lenore J, and Geerlings, Mirjam I
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Health Services and Systems ,Health Sciences ,Dementia ,Brain Disorders ,Aging ,Alzheimer's Disease ,Prevention ,Acquired Cognitive Impairment ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Neurodegenerative ,Neurological ,Female ,Humans ,Male ,Netherlands ,Population Surveillance ,Predictive Value of Tests ,Reproducibility of Results ,Risk Assessment ,Risk Factors ,Alzheimer's disease ,Prognosis ,Validation ,Alzheimer’s disease ,Public Health and Health Services ,Epidemiology - Abstract
We aimed to evaluate the external performance of prediction models for all-cause dementia or AD in the general population, which can aid selection of high-risk individuals for clinical trials and prevention. We identified 17 out of 36 eligible published prognostic models for external validation in the population-based AGES-Reykjavik Study. Predictive performance was assessed with c statistics and calibration plots. All five models with a c statistic > .75 (.76-.81) contained cognitive testing as a predictor, while all models with lower c statistics (.67-.75) did not. Calibration ranged from good to poor across all models, including systematic risk overestimation or overestimation for particularly the highest risk group. Models that overestimate risk may be acceptable for exclusion purposes, but lack the ability to accurately identify individuals at higher dementia risk. Both updating existing models or developing new models aimed at identifying high-risk individuals, as well as more external validation studies of dementia prediction models are warranted.
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- 2021
23. Enabling Learners Starts with Knowing Them: Student Attitudes, Aspiration and Anxiety towards Science and Maths Learning in an Australian Pre-University Enabling Program
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Lisciandro, Joanne G., Jones, Angela, and Geerlings, Peter
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Pre-university enabling programs provide an important pathway to university for underprepared and disadvantaged students. In order to adequately prepare students for their university journey, enabling educators need to understand and respond to the evolving needs of their learners; not only their academic disparity, but also their past learning experiences and perceptions towards particular subjects. In the current study, students entering an Australian enabling program, 'OnTrack', were surveyed on their attitudes, emotions and aspirations towards the study of science and mathematics. Responses were associated with student perceptions of their past science and maths learning experiences. There was incongruity between student expectations of what future study would entail and the realities of their degree choices and career aspirations. This study suggests the need for social and emotional learning and teacher training. Greater attention should be given to both student's affective needs and their understanding of future course content during their enabling education experience to redress negative emotional learning experiences and safeguard student expectations, satisfaction, and retention in the future.
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- 2018
24. Quantum back-action of variable-strength measurement
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Hatridge, M., Shankar, S., Mirrahimi, M., Schackert, F., Geerlings, K., Brecht, T., Sliwa, K. M., Abdo, B., Frunzio, L., Girvin, S. M., Schoelkopf, R. J., and Devoret, M. H.
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Quantum Physics - Abstract
Measuring a quantum system can randomly perturb its state. The strength and nature of this back-action depends on the quantity which is measured. In a partial measurement performed by an ideal apparatus, quantum physics predicts that the system remains in a pure state whose evolution can be tracked perfectly from the measurement record. We demonstrate this property using a superconducting qubit dispersively coupled to a cavity traversed by a microwave signal. The back-action on the qubit state of a single measurement of both signal quadratures is observed and shown to produce a stochastic operation whose action is determined by the measurement result. This accurate monitoring of a qubit state is an essential prerequisite for measurement-based feedback control of quantum systems.
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- 2019
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25. Stroke genetics informs drug discovery and risk prediction across ancestries
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Mishra, Aniket, Malik, Rainer, Hachiya, Tsuyoshi, Jürgenson, Tuuli, Namba, Shinichi, Posner, Daniel C., Kamanu, Frederick K., Koido, Masaru, Le Grand, Quentin, Shi, Mingyang, He, Yunye, Georgakis, Marios K., Caro, Ilana, Krebs, Kristi, Liaw, Yi-Ching, Vaura, Felix C., Lin, Kuang, Winsvold, Bendik Slagsvold, Srinivasasainagendra, Vinodh, Parodi, Livia, Bae, Hee-Joon, Chauhan, Ganesh, Chong, Michael R., Tomppo, Liisa, Akinyemi, Rufus, Roshchupkin, Gennady V., Habib, Naomi, Jee, Yon Ho, Thomassen, Jesper Qvist, Abedi, Vida, Cárcel-Márquez, Jara, Nygaard, Marianne, Leonard, Hampton L., Yang, Chaojie, Yonova-Doing, Ekaterina, Knol, Maria J., Lewis, Adam J., Judy, Renae L., Ago, Tetsuro, Amouyel, Philippe, Armstrong, Nicole D., Bakker, Mark K., Bartz, Traci M., Bennett, David A., Bis, Joshua C., Bordes, Constance, Børte, Sigrid, Cain, Anael, Ridker, Paul M., Cho, Kelly, Chen, Zhengming, Cruchaga, Carlos, Cole, John W., de Jager, Phil L., de Cid, Rafael, Endres, Matthias, Ferreira, Leslie E., Geerlings, Mirjam I., Gasca, Natalie C., Gudnason, Vilmundur, Hata, Jun, He, Jing, Heath, Alicia K., Ho, Yuk-Lam, Havulinna, Aki S., Hopewell, Jemma C., Hyacinth, Hyacinth I., Inouye, Michael, Jacob, Mina A., Jeon, Christina E., Jern, Christina, Kamouchi, Masahiro, Keene, Keith L., Kitazono, Takanari, Kittner, Steven J., Konuma, Takahiro, Kumar, Amit, Lacaze, Paul, Launer, Lenore J., Lee, Keon-Joo, Lepik, Kaido, Li, Jiang, Li, Liming, Manichaikul, Ani, Markus, Hugh S., Marston, Nicholas A., Meitinger, Thomas, Mitchell, Braxton D., Montellano, Felipe A., Morisaki, Takayuki, Mosley, Thomas H., Nalls, Mike A., Nordestgaard, Børge G., O’Donnell, Martin J., Okada, Yukinori, Onland-Moret, N. Charlotte, Ovbiagele, Bruce, Peters, Annette, Psaty, Bruce M., Rich, Stephen S., Rosand, Jonathan, Sabatine, Marc S., Sacco, Ralph L., Saleheen, Danish, Sandset, Else Charlotte, Salomaa, Veikko, Sargurupremraj, Muralidharan, Sasaki, Makoto, Satizabal, Claudia L., Schmidt, Carsten O., Shimizu, Atsushi, Smith, Nicholas L., Sloane, Kelly L., Sutoh, Yoichi, Sun, Yan V., Tanno, Kozo, Tiedt, Steffen, Tatlisumak, Turgut, Torres-Aguila, Nuria P., Tiwari, Hemant K., Trégouët, David-Alexandre, Trompet, Stella, Tuladhar, Anil Man, Tybjærg-Hansen, Anne, van Vugt, Marion, Vibo, Riina, Verma, Shefali S., Wiggins, Kerri L., Wennberg, Patrik, Woo, Daniel, Wilson, Peter W. F., Xu, Huichun, Yang, Qiong, Yoon, Kyungheon, Millwood, Iona Y., Gieger, Christian, Ninomiya, Toshiharu, Grabe, Hans J., Jukema, J. Wouter, Rissanen, Ina L., Strbian, Daniel, Kim, Young Jin, Chen, Pei-Hsin, Mayerhofer, Ernst, Howson, Joanna M. M., Irvin, Marguerite R., Adams, Hieab, Wassertheil-Smoller, Sylvia, Christensen, Kaare, Ikram, Mohammad A., Rundek, Tatjana, Worrall, Bradford B., Lathrop, G. Mark, Riaz, Moeen, Simonsick, Eleanor M., Kõrv, Janika, França, Paulo H. C., Zand, Ramin, Prasad, Kameshwar, Frikke-Schmidt, Ruth, de Leeuw, Frank-Erik, Liman, Thomas, Haeusler, Karl Georg, Ruigrok, Ynte M., Heuschmann, Peter Ulrich, Longstreth, W. T., Jung, Keum Ji, Bastarache, Lisa, Paré, Guillaume, Damrauer, Scott M., Chasman, Daniel I., Rotter, Jerome I., Anderson, Christopher D., Zwart, John-Anker, Niiranen, Teemu J., Fornage, Myriam, Liaw, Yung-Po, Seshadri, Sudha, Fernández-Cadenas, Israel, Walters, Robin G., Ruff, Christian T., Owolabi, Mayowa O., Huffman, Jennifer E., Milani, Lili, Kamatani, Yoichiro, Dichgans, Martin, and Debette, Stephanie
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- 2022
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26. Dynamic metabolic interactions and trophic roles of human gut microbes identified using a minimal microbiome exhibiting ecological properties
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Shetty, Sudarshan A., Kostopoulos, Ioannis, Geerlings, Sharon Y., Smidt, Hauke, de Vos, Willem M., and Belzer, Clara
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- 2022
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27. Progress update from the hippocampal subfields group
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Olsen, Rosanna K, Carr, Valerie A, Daugherty, Ana M, La Joie, Renaud, Amaral, Robert SC, Amunts, Katrin, Augustinack, Jean C, Bakker, Arnold, Bender, Andrew R, Berron, David, Boccardi, Marina, Bocchetta, Martina, Burggren, Alison C, Chakravarty, M Mallar, Chételat, Gaël, de Flores, Robin, DeKraker, Jordan, Ding, Song‐Lin, Geerlings, Mirjam I, Huang, Yushan, Insausti, Ricardo, Johnson, Elliott G, Kanel, Prabesh, Kedo, Olga, Kennedy, Kristen M, Keresztes, Attila, Lee, Joshua K, Lindenberger, Ulman, Mueller, Susanne G, Mulligan, Elizabeth M, Ofen, Noa, Palombo, Daniela J, Pasquini, Lorenzo, Pluta, John, Raz, Naftali, Rodrigue, Karen M, Schlichting, Margaret L, Shing, Yee Lee, Stark, Craig EL, Steve, Trevor A, Suthana, Nanthia A, Wang, Lei, Werkle‐Bergner, Markus, Yushkevich, Paul A, Yu, Qijing, Wisse, Laura EM, and Group, Hippocampal Subfields
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Biological Psychology ,Biomedical and Clinical Sciences ,Neurosciences ,Psychology ,Hippocampus ,Volumetry ,Human ,Neuroimaging ,Structural imaging ,Neuroanatomy ,Histology ,Cytoarchitecture ,ex vivo ,Hippocampal Subfields Group ,ex vivo ,Genetics ,Biological psychology - Abstract
IntroductionHeterogeneity of segmentation protocols for medial temporal lobe regions and hippocampal subfields on in vivo magnetic resonance imaging hinders the ability to integrate findings across studies. We aim to develop a harmonized protocol based on expert consensus and histological evidence.MethodsOur international working group, funded by the EU Joint Programme-Neurodegenerative Disease Research (JPND), is working toward the production of a reliable, validated, harmonized protocol for segmentation of medial temporal lobe regions. The working group uses a novel postmortem data set and online consensus procedures to ensure validity and facilitate adoption.ResultsThis progress report describes the initial results and milestones that we have achieved to date, including the development of a draft protocol and results from the initial reliability tests and consensus procedures.DiscussionA harmonized protocol will enable the standardization of segmentation methods across laboratories interested in medial temporal lobe research worldwide.
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- 2019
28. Slope of the Delocalization Function Is Proportional to Analytical Hardness.
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Wang, Bin, Geerlings, Paul, Heidar-Zadeh, Farnaz, Ayers, Paul W., and De Proft, Frank
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- 2024
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29. 'That's the World Standard': A Critical Ethnography of 'Universal' Knowledge
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Geerlings, Lennie and Lundberg, Anita
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This paper analyzes how knowledge is reproduced as "universal" in contemporary higher education and how this production of universality influences the application of knowledge. Using a case study of clinical psychology, it describes the results of over two years of ethnographic fieldwork in a university and professional settings in Singapore with short comparative field studies in Australia and the Netherlands. The results provide critical insights into the cultural effects and knowledge contestations within transnational higher education.
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- 2020
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30. Pathways to electrochemical solar-hydrogen technologies
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Ardo, Shane, Fernandez Rivas, David, Modestino, Miguel A, Schulze Greiving, Verena, Abdi, Fatwa F, Alarcon Llado, Esther, Artero, Vincent, Ayers, Katherine, Battaglia, Corsin, Becker, Jan-Philipp, Bederak, Dmytro, Berger, Alan, Buda, Francesco, Chinello, Enrico, Dam, Bernard, Di Palma, Valerio, Edvinsson, Tomas, Fujii, Katsushi, Gardeniers, Han, Geerlings, Hans, H. Hashemi, S Mohammad, Haussener, Sophia, Houle, Frances, Huskens, Jurriaan, James, Brian D, Konrad, Kornelia, Kudo, Akihiko, Kunturu, Pramod Patil, Lohse, Detlef, Mei, Bastian, Miller, Eric L, Moore, Gary F, Muller, Jiri, Orchard, Katherine L, Rosser, Timothy E, Saadi, Fadl H, Schüttauf, Jan-Willem, Seger, Brian, Sheehan, Stafford W, Smith, Wilson A, Spurgeon, Joshua, Tang, Maureen H, van de Krol, Roel, Vesborg, Peter CK, and Westerik, Pieter
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Engineering ,Materials Engineering ,Affordable and Clean Energy ,Energy - Abstract
Solar-powered electrochemical production of hydrogen through water electrolysis is an active and important research endeavor. However, technologies and roadmaps for implementation of this process do not exist. In this perspective paper, we describe potential pathways for solar-hydrogen technologies into the marketplace in the form of photoelectrochemical or photovoltaic-driven electrolysis devices and systems. We detail technical approaches for device and system architectures, economic drivers, societal perceptions, political impacts, technological challenges, and research opportunities. Implementation scenarios are broken down into short-term and long-term markets, and a specific technology roadmap is defined. In the short term, the only plausible economical option will be photovoltaic-driven electrolysis systems for niche applications. In the long term, electrochemical solar-hydrogen technologies could be deployed more broadly in energy markets but will require advances in the technology, significant cost reductions, and/or policy changes. Ultimately, a transition to a society that significantly relies on solar-hydrogen technologies will benefit from continued creativity and influence from the scientific community.
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- 2018
31. Using former carers’ expertise in peer support for carers of people with Parkinson’s Disease
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Geerlings, Angelika D., Meinders, Marjan J., Bloem, Bastiaan R., and van der Marck, Marjolein A.
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- 2022
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32. Effect of physical exercise on cognitive function after chemotherapy in patients with breast cancer: a randomized controlled trial (PAM study)
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Koevoets, E. W., Schagen, S. B., de Ruiter, M. B., Geerlings, M. I., Witlox, L., van der Wall, E., Stuiver, M. M., Sonke, G. S., Velthuis, M. J., Jobsen, J. J., Menke-Pluijmers, M. B. E., Göker, E., van der Pol, C. C., Bos, M. E. M. M., Tick, L. W., van Holsteijn, N. A., van der Palen, J., May, A. M., and Monninkhof, E. M.
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- 2022
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33. Urine and vaginal microbiota compositions of postmenopausal and premenopausal women differ regardless of recurrent urinary tract infection and renal transplant status
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Hugenholtz, Floor, van der Veer, Charlotte, Terpstra, Matty L., Borgdorff, Hanneke, van Houdt, Robin, Bruisten, Sylvia, Geerlings, Suzanne E., and van de Wijgert, Janneke H. H. M.
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- 2022
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34. Shared decision making for women with uncomplicated Cystitis in Primary Care in the Netherlands: a qualitative interview study
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van Horrik, Tessa M.Z.X.K., Laan, Bart J., van Seben, Rosanne, Rodenburg, Gerda, Heeregrave, Edwin J., and Geerlings, Suzanne E.
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- 2022
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35. Peer Assisted Study Sessions (PASS): Does Gender Matter?
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Geerlings, Peter M., Cole, Helen, Batt, Sharryn, and Martin-Lynch, Pamela
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Peer-learning is an effective way to assist students to acquire study skills and content knowledge, especially in university courses that students find difficult, and it is an effective adjunct to improve student retention. In 2014, Murdoch University in Perth, Western Australia, commenced Peer Assisted Study Sessions (PASS) in two first-year undergraduate subjects: a mathematics (statistics) unit and a business unit. The key finding in this evaluation was that while female mathematics students improved their final marks in response to attending a greater number of sessions per semester, male students achieved lower final marks on average. Although several studies have shown that in PASS-like programs gender tends to not be a significant factor relating to achievement, our results suggest otherwise. In this article we posit the observed differences in achievement attributed to gender arise from complex gender-related issues, including gender stereotypes, student gender ratios in class, the gender of the teacher relative to the gender of the student, and gender-related motivation, engagement, and subject choice. An approach to remediate gender-associated differences in achievement for PASS attendees is proposed.
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- 2016
36. Classroom Identification in Ethnic Minority and Majority Students: Effects of Relationships and Ethnic Composition
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Thijs, Jochem, Keim, Abigail C., and Geerlings, Jolien
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Background: Many studies have shown that school belonging is crucial for students' school adjustment, but the construct has been operationalized in different ways. Moreover, most research has focused on adolescents and not compared its antecedents for ethnic minority versus majority students. Aims: Based on Goodenow and Grady's (1993) seminal paper, we examined classroom identification as a central aspect of school belonging in minority and majority preadolescents, and predicted it from relationships with peers and teachers, taking into account classroom ethnic composition and perceived multicultural teaching. Sample: Participants were 485 grade 4-6 students from 39 classrooms in Dutch primary schools. Of these children, 68 had a Turkish background, 72 had a Moroccan background, and 345 had a native Dutch background. Methods: Participants completed questionnaires at two waves (4.5 months apart). We used self-reports to measure classroom identification at both waves, and student-teacher relationship closeness and conflict, multicultural teaching, and peer friendship and rejection at Wave 1. We conducted multilevel analyses to predict classroom identification at Wave 2, while controlling for classroom identification at Wave 1. Results: Children of all ethnicities reported more classroom identification over time if they were less rejected by their peers and had more co-ethnic classmates. For minority children, both closeness and conflict with the teacher predicted less identification, but the effect of conflict appeared to result from their ethnic underrepresentation in the classroom. Conclusions: Negative peer relationships can undermine classroom identification, and the student-teacher relationship has special significance for ethnic minority students.
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- 2019
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37. Depressive Symptoms and Plasma Markers of Alzheimer's Disease and Neurodegeneration: A Coordinated Meta-Analysis of 8 Cohort Studies.
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Twait, Emma L., Kamarioti, Maria, Verberk, Inge M.W., Teunissen, Charlotte E., Nooyens, Astrid C.J., Monique Verschuren, W.M., Visser, Pieter Jelle, Huisman, Martijn, Kok, Almar A.L., Eline Slagboom, P., Beekman, Marian, Vojinovic, Dina, Lakenberg, Nico, Arfan Ikram, M., Schuurmans, Isabel K., Wolters, Frank J., Moonen, Justine E.F., Gerritsen, Lotte, van der Flier, Wiesje M., and Geerlings, Mirjam I.
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• What is the primary question addressed by this study? The current study aimed to assess if late-life depressive symptoms were associated with plasma amyloid-beta42/40, p-tau181, neurofilament light, or glial fibrillary acidic protein. • What is the main finding of this study? Late-life depressive symptoms were not associated with plasma biomarkers for Alzheimer's disease pathology, axonal injury, or astrocytic activation. • What is the meaning of the finding? In those with a genetic risk for Alzheimer's disease, axonal injury was associated with increased depressive symptoms. Depressive symptoms are associated with an increased risk of Alzheimer's disease (AD). There has been a recent emergence in plasma biomarkers for AD pathophysiology, such as amyloid-beta (Aβ) and phosphorylated tau (p-tau), as well as for axonal damage (neurofilament light, NfL) and astrocytic activation (glial fibrillary acidic protein, GFAP). Hypothesizing that depressive symptoms may occur along the AD process, we investigated associations between plasma biomarkers of AD with depressive symptoms in individuals without dementia. A two-stage meta-analysis was performed on 2 clinic-based and 6 population-based cohorts (N = 7210) as part of the Netherlands Consortium of Dementia Cohorts. Plasma markers (Aβ42/40, p-tau181, NfL, and GFAP) were measured using Single Molecular Array (Simoa; Quanterix) assays. Depressive symptoms were measured with validated questionnaires. We estimated the cross-sectional association of each standardized plasma marker (determinants) with standardized depressive symptoms (outcome) using linear regressions, correcting for age, sex, education, and APOE ε4 allele presence, as well as subgrouping by sex and APOE ε4 allele. Effect estimates were entered into a random-effects meta-analysis. Mean age of participants was 71 years. The prevalence of clinically relevant depressive symptoms ranged from 1% to 22%. None of the plasma markers were associated with depressive symptoms in the meta-analyses. However, NfL was associated with depressive symptoms only in APOE ε4 carriers (β 0.11; 95% CI: 0.05–0.17). Late-life depressive symptoms did not show an association to plasma biomarkers of AD pathology. However, in APOE ε4 allele carriers, a more profound role of neurodegeneration was suggested with depressive symptoms. [ABSTRACT FROM AUTHOR]
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- 2024
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38. Publisher Correction: Stroke genetics informs drug discovery and risk prediction across ancestries
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Mishra, Aniket, Malik, Rainer, Hachiya, Tsuyoshi, Jürgenson, Tuuli, Namba, Shinichi, Posner, Daniel C., Kamanu, Frederick K., Koido, Masaru, Le Grand, Quentin, Shi, Mingyang, He, Yunye, Georgakis, Marios K., Caro, Ilana, Krebs, Kristi, Liaw, Yi-Ching, Vaura, Felix C., Lin, Kuang, Winsvold, Bendik Slagsvold, Srinivasasainagendra, Vinodh, Parodi, Livia, Bae, Hee-Joon, Chauhan, Ganesh, Chong, Michael R., Tomppo, Liisa, Akinyemi, Rufus, Roshchupkin, Gennady V., Habib, Naomi, Jee, Yon Ho, Thomassen, Jesper Qvist, Abedi, Vida, Cárcel-Márquez, Jara, Nygaard, Marianne, Leonard, Hampton L., Yang, Chaojie, Yonova-Doing, Ekaterina, Knol, Maria J., Lewis, Adam J., Judy, Renae L., Ago, Tetsuro, Amouyel, Philippe, Armstrong, Nicole D., Bakker, Mark K., Bartz, Traci M., Bennett, David A., Bis, Joshua C., Bordes, Constance, Børte, Sigrid, Cain, Anael, Ridker, Paul M., Cho, Kelly, Chen, Zhengming, Cruchaga, Carlos, Cole, John W., de Jager, Phil L., de Cid, Rafael, Endres, Matthias, Ferreira, Leslie E., Geerlings, Mirjam I., Gasca, Natalie C., Gudnason, Vilmundur, Hata, Jun, He, Jing, Heath, Alicia K., Ho, Yuk-Lam, Havulinna, Aki S., Hopewell, Jemma C., Hyacinth, Hyacinth I., Inouye, Michael, Jacob, Mina A., Jeon, Christina E., Jern, Christina, Kamouchi, Masahiro, Keene, Keith L., Kitazono, Takanari, Kittner, Steven J., Konuma, Takahiro, Kumar, Amit, Lacaze, Paul, Launer, Lenore J., Lee, Keon-Joo, Lepik, Kaido, Li, Jiang, Li, Liming, Manichaikul, Ani, Markus, Hugh S., Marston, Nicholas A., Meitinger, Thomas, Mitchell, Braxton D., Montellano, Felipe A., Morisaki, Takayuki, Mosley, Thomas H., Nalls, Mike A., Nordestgaard, Børge G., O’Donnell, Martin J., Okada, Yukinori, Onland-Moret, N. Charlotte, Ovbiagele, Bruce, Peters, Annette, Psaty, Bruce M., Rich, Stephen S., Rosand, Jonathan, Sabatine, Marc S., Sacco, Ralph L., Saleheen, Danish, Sandset, Else Charlotte, Salomaa, Veikko, Sargurupremraj, Muralidharan, Sasaki, Makoto, Satizabal, Claudia L., Schmidt, Carsten O., Shimizu, Atsushi, Smith, Nicholas L., Sloane, Kelly L., Sutoh, Yoichi, Sun, Yan V., Tanno, Kozo, Tiedt, Steffen, Tatlisumak, Turgut, Torres-Aguila, Nuria P., Tiwari, Hemant K., Trégouët, David-Alexandre, Trompet, Stella, Tuladhar, Anil Man, Tybjærg-Hansen, Anne, van Vugt, Marion, Vibo, Riina, Verma, Shefali S., Wiggins, Kerri L., Wennberg, Patrik, Woo, Daniel, Wilson, Peter W. F., Xu, Huichun, Yang, Qiong, Yoon, Kyungheon, Millwood, Iona Y., Gieger, Christian, Ninomiya, Toshiharu, Grabe, Hans J., Jukema, J. Wouter, Rissanen, Ina L., Strbian, Daniel, Kim, Young Jin, Chen, Pei-Hsin, Mayerhofer, Ernst, Howson, Joanna M. M., Irvin, Marguerite R., Adams, Hieab, Wassertheil-Smoller, Sylvia, Christensen, Kaare, Ikram, Mohammad A., Rundek, Tatjana, Worrall, Bradford B., Lathrop, G. Mark, Riaz, Moeen, Simonsick, Eleanor M., Kõrv, Janika, França, Paulo H. C., Zand, Ramin, Prasad, Kameshwar, Frikke-Schmidt, Ruth, de Leeuw, Frank-Erik, Liman, Thomas, Haeusler, Karl Georg, Ruigrok, Ynte M., Heuschmann, Peter Ulrich, Longstreth, W. T., Jung, Keum Ji, Bastarache, Lisa, Paré, Guillaume, Damrauer, Scott M., Chasman, Daniel I., Rotter, Jerome I., Anderson, Christopher D., Zwart, John-Anker, Niiranen, Teemu J., Fornage, Myriam, Liaw, Yung-Po, Seshadri, Sudha, Fernández-Cadenas, Israel, Walters, Robin G., Ruff, Christian T., Owolabi, Mayowa O., Huffman, Jennifer E., Milani, Lili, Kamatani, Yoichiro, Dichgans, Martin, and Debette, Stephanie
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- 2022
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39. The effect of bile acids on the growth and global gene expression profiles in Akkermansia muciniphila
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Hagi, Tatsuro, Geerlings, Sharon Y., Nijsse, Bart, and Belzer, Clara
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- 2020
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40. Shifting Landscapes in Higher Education: A Case Study of Transferable Skills and a Networked Classroom in South-East Asia
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Carter, Margaret Anne, Lundberg, Anita, Geerlings, Lennie R. C., and Bhati, Abhishek
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The rapidly changing workforce of the C21st places increasing demands on higher education institutions to produce graduates who possess sound academic credentials and key skills, and who furthermore demonstrate the ability to transfer knowledge and skills from their studies to the workplace. This paper begins with a definition of key/core skills, followed by a discussion of how they relate to transferable skills. A review of literature regarding the transference of skills from tertiary settings to workplaces in South-East Asia reveals that most literature of the region addresses key competencies rather than the transferable skills that employers value. Transferable skills are further analysed in the context of networked spaces of learning and the theory of connectivist learning. A case study of one networked classroom (NC) of an Australian university in Singapore is presented, highlighting how engagement in problem-based and project-based learning contributes to the development of transferable skills. Results indicate that the spatial and material resources of the NC intersect with practice-based learning experiences assisting students in skills acquisition by providing a teaching and learning space in which to apply transferable skills. Implications of this study point to the need for further research regarding embedding transferable skills within higher education curricula.
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- 2019
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41. Quantitative comparison of 21 protocols for labeling hippocampal subfields and parahippocampal subregions in in vivo MRI: Towards a harmonized segmentation protocol
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Yushkevich, Paul A, Amaral, Robert SC, Augustinack, Jean C, Bender, Andrew R, Bernstein, Jeffrey D, Boccardi, Marina, Bocchetta, Martina, Burggren, Alison C, Carr, Valerie A, Chakravarty, M Mallar, Chételat, Gaël, Daugherty, Ana M, Davachi, Lila, Ding, Song-Lin, Ekstrom, Arne, Geerlings, Mirjam I, Hassan, Abdul, Huang, Yushan, Iglesias, J Eugenio, La Joie, Renaud, Kerchner, Geoffrey A, LaRocque, Karen F, Libby, Laura A, Malykhin, Nikolai, Mueller, Susanne G, Olsen, Rosanna K, Palombo, Daniela J, Parekh, Mansi B, Pluta, John B, Preston, Alison R, Pruessner, Jens C, Ranganath, Charan, Raz, Naftali, Schlichting, Margaret L, Schoemaker, Dorothee, Singh, Sachi, Stark, Craig EL, Suthana, Nanthia, Tompary, Alexa, Turowski, Marta M, Van Leemput, Koen, Wagner, Anthony D, Wang, Lei, Winterburn, Julie L, Wisse, Laura EM, Yassa, Michael A, Zeineh, Michael M, and Group, for the Hippocampal Subfields
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Biomedical and Clinical Sciences ,Biomedical Imaging ,Neurosciences ,Adult ,Clinical Protocols ,Hippocampus ,Humans ,Image Processing ,Computer-Assisted ,Magnetic Resonance Imaging ,Parahippocampal Gyrus ,Medial temporal lobe ,Hippocampal subfields ,CA1 ,CA2 ,CA3 ,Dentate gyrus ,Subiculum ,Entorhinal cortex ,Perirhinal cortex ,Parahippocampal gyrus ,Magnetic resonance imaging ,Segmentation ,Unified protocol ,Hippocampal Subfields Group ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Neurology & Neurosurgery ,Biomedical and clinical sciences ,Health sciences - Abstract
ObjectiveAn increasing number of human in vivo magnetic resonance imaging (MRI) studies have focused on examining the structure and function of the subfields of the hippocampal formation (the dentate gyrus, CA fields 1-3, and the subiculum) and subregions of the parahippocampal gyrus (entorhinal, perirhinal, and parahippocampal cortices). The ability to interpret the results of such studies and to relate them to each other would be improved if a common standard existed for labeling hippocampal subfields and parahippocampal subregions. Currently, research groups label different subsets of structures and use different rules, landmarks, and cues to define their anatomical extents. This paper characterizes, both qualitatively and quantitatively, the variability in the existing manual segmentation protocols for labeling hippocampal and parahippocampal substructures in MRI, with the goal of guiding subsequent work on developing a harmonized substructure segmentation protocol.MethodMRI scans of a single healthy adult human subject were acquired both at 3 T and 7 T. Representatives from 21 research groups applied their respective manual segmentation protocols to the MRI modalities of their choice. The resulting set of 21 segmentations was analyzed in a common anatomical space to quantify similarity and identify areas of agreement.ResultsThe differences between the 21 protocols include the region within which segmentation is performed, the set of anatomical labels used, and the extents of specific anatomical labels. The greatest overall disagreement among the protocols is at the CA1/subiculum boundary, and disagreement across all structures is greatest in the anterior portion of the hippocampal formation relative to the body and tail.ConclusionsThe combined examination of the 21 protocols in the same dataset suggests possible strategies towards developing a harmonized subfield segmentation protocol and facilitates comparison between published studies.
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- 2015
42. The EADC‐ADNI Harmonized Protocol for manual hippocampal segmentation on magnetic resonance: Evidence of validity
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Frisoni, Giovanni B, Jack, Clifford R, Bocchetta, Martina, Bauer, Corinna, Frederiksen, Kristian S, Liu, Yawu, Preboske, Gregory, Swihart, Tim, Blair, Melanie, Cavedo, Enrica, Grothe, Michel J, Lanfredi, Mariangela, Martinez, Oliver, Nishikawa, Masami, Portegies, Marileen, Stoub, Travis, Ward, Chadwich, Apostolova, Liana G, Ganzola, Rossana, Wolf, Dominik, Barkhof, Frederik, Bartzokis, George, DeCarli, Charles, Csernansky, John G, deToledo‐Morrell, Leyla, Geerlings, Mirjam I, Kaye, Jeffrey, Killiany, Ronald J, Lehéricy, Stephane, Matsuda, Hiroshi, O'Brien, John, Silbert, Lisa C, Scheltens, Philip, Soininen, Hilkka, Teipel, Stefan, Waldemar, Gunhild, Fellgiebel, Andreas, Barnes, Josephine, Firbank, Michael, Gerritsen, Lotte, Henneman, Wouter, Malykhin, Nikolai, Pruessner, Jens C, Wang, Lei, Watson, Craig, Wolf, Henrike, deLeon, Mony, Pantel, Johannes, Ferrari, Clarissa, Bosco, Paolo, Pasqualetti, Patrizio, Duchesne, Simon, Duvernoy, Henri, Boccardi, Marina, Initiative, EADC‐ADNI Working Group on The Harmonized Protocol for Manual Hippocampal Volumetry and for the Alzheimer's Disease Neuroimaging, Albert, Marilyn S, Bennet, David, Camicioli, Richard, Collins, D Louis, Dubois, Bruno, Hampel, Harald, denHeijer, Tom, Hock, Christofer, Jagust, William, Launer, Leonore, Maller, Jerome J, Mueller, Susan, Sachdev, Perminder, Simmons, Andy, Thompson, Paul M, Visser, Peter‐Jelle, Wahlund, Lars‐Olof, Weiner, Michael W, and Winblad, Bengt
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Biomedical and Clinical Sciences ,Neurosciences ,Clinical Sciences ,Biomedical Imaging ,Neurodegenerative ,Clinical Research ,Brain Disorders ,Acquired Cognitive Impairment ,Bioengineering ,Aged ,Alzheimer Disease ,Atrophy ,Female ,Functional Laterality ,Hippocampus ,Humans ,Image Processing ,Computer-Assisted ,Imaging ,Three-Dimensional ,Internet ,Magnetic Resonance Imaging ,Male ,Middle Aged ,Neuroimaging ,Organ Size ,Reproducibility of Results ,Hippocampal volumetry ,Magnetic resonance ,Alzheimer's disease ,Biomarkers ,Diagnostic criteria ,Enrichment ,Clinical trials ,Validation ,Harmonized protocol ,Standard operating procedures ,Manual segmentation ,EADC-ADNI Working Group on The Harmonized Protocol for Manual Hippocampal Volumetry and for the Alzheimer's Disease Neuroimaging Initiative ,Geriatrics ,Clinical sciences ,Biological psychology - Abstract
BackgroundAn international Delphi panel has defined a harmonized protocol (HarP) for the manual segmentation of the hippocampus on MR. The aim of this study is to study the concurrent validity of the HarP toward local protocols, and its major sources of variance.MethodsFourteen tracers segmented 10 Alzheimer's Disease Neuroimaging Initiative (ADNI) cases scanned at 1.5 T and 3T following local protocols, qualified for segmentation based on the HarP through a standard web-platform and resegmented following the HarP. The five most accurate tracers followed the HarP to segment 15 ADNI cases acquired at three time points on both 1.5 T and 3T.ResultsThe agreement among tracers was relatively low with the local protocols (absolute left/right ICC 0.44/0.43) and much higher with the HarP (absolute left/right ICC 0.88/0.89). On the larger set of 15 cases, the HarP agreement within (left/right ICC range: 0.94/0.95 to 0.99/0.99) and among tracers (left/right ICC range: 0.89/0.90) was very high. The volume variance due to different tracers was 0.9% of the total, comparing favorably to variance due to scanner manufacturer (1.2), atrophy rates (3.5), hemispheric asymmetry (3.7), field strength (4.4), and significantly smaller than the variance due to atrophy (33.5%, P < .001), and physiological variability (49.2%, P < .001).ConclusionsThe HarP has high measurement stability compared with local segmentation protocols, and good reproducibility within and among human tracers. Hippocampi segmented with the HarP can be used as a reference for the qualification of human tracers and automated segmentation algorithms.
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- 2015
43. An anomaly detection approach to identify chronic brain infarcts on MRI
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van Hespen, Kees M., Zwanenburg, Jaco J. M., Dankbaar, Jan W., Geerlings, Mirjam I., Hendrikse, Jeroen, and Kuijf, Hugo J.
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- 2021
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44. Efficient long-range conduction in cable bacteria through nickel protein wires
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Boschker, Henricus T. S., Cook, Perran L. M., Polerecky, Lubos, Eachambadi, Raghavendran Thiruvallur, Lozano, Helena, Hidalgo-Martinez, Silvia, Khalenkow, Dmitry, Spampinato, Valentina, Claes, Nathalie, Kundu, Paromita, Wang, Da, Bals, Sara, Sand, Karina K., Cavezza, Francesca, Hauffman, Tom, Bjerg, Jesper Tataru, Skirtach, Andre G., Kochan, Kamila, McKee, Merrilyn, Wood, Bayden, Bedolla, Diana, Gianoncelli, Alessandra, Geerlings, Nicole M. J., Van Gerven, Nani, Remaut, Han, Geelhoed, Jeanine S., Millan-Solsona, Ruben, Fumagalli, Laura, Nielsen, Lars Peter, Franquet, Alexis, Manca, Jean V., Gomila, Gabriel, and Meysman, Filip J. R.
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- 2021
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45. A randomised controlled trial testing the efficacy of Fit after COVID, a cognitive behavioural therapy targeting severe post-infectious fatigue following COVID-19 (ReCOVer): study protocol
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Kuut, T. A., Müller, F., Aldenkamp, A., Assmann-Schuilwerve, E., Braamse, A., Geerlings, S. E., Gibney, K. B., Kanaan, R. A. A., Nieuwkerk, P., Olde Hartman, T. C., Pauëlsen, D., Prins, M., Slieker, K., Van Vugt, M., Bleeker-Rovers, C. P., Keijmel, S. P., and Knoop, H.
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- 2021
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46. The relationship between time to diagnose and diagnostic accuracy among internal medicine residents: a randomized experiment
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Staal, J., Alsma, J., Mamede, S., Olson, A. P. J., Prins-van Gilst, G., Geerlings, S. E., Plesac, M., Sundberg, M. A., Frens, M. A., Schmidt, H. G., Van den Broek, W. W., and Zwaan, L.
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- 2021
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47. Genomic convergence between Akkermansia muciniphila in different mammalian hosts
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Geerlings, Sharon Y., Ouwerkerk, Janneke P., Koehorst, Jasper J., Ritari, Jarmo, Aalvink, Steven, Stecher, Bärbel, Schaap, Peter J., Paulin, Lars, de Vos, Willem M., and Belzer, Clara
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- 2021
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48. Fatigue in patients with chronic disease: results from the population-based Lifelines Cohort Study
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Goërtz, Yvonne M. J., Braamse, Annemarie M. J., Spruit, Martijn A., Janssen, Daisy J. A., Ebadi, Zjala, Van Herck, Maarten, Burtin, Chris, Peters, Jeannette B., Sprangers, Mirjam A. G., Lamers, Femke, Twisk, Jos W. R., Thong, Melissa S. Y., Vercoulen, Jan H., Geerlings, Suzanne E., Vaes, Anouk W., Beijers, Rosanne J. H. C. G., van Beers, Martijn, Schols, Annemie M. W. J., Rosmalen, Judith G. M., and Knoop, Hans
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- 2021
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49. Protein Intake Falls below 0.6 g·kg-1·d-1 in Healthy, Older Patients Admitted for Elective Hip or Knee Arthroplasty
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Weijzen, M.E.G., Kouw, I.W.K., Verschuren, A.A.J., Muyters, R., Geurts, J.A., Emans, P.J., Geerlings, P., Verdijk, L.B., and van Loon, L.J.C.
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- 2019
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50. Demonstrating a Driven Reset Protocol of a Superconducting Qubit
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Geerlings, K., Leghtas, Z., Pop, I. M., Shankar, S., Frunzio, L., Schoelkopf, R. J., Mirrahimi, M., and Devoret, M. H.
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Condensed Matter - Mesoscale and Nanoscale Physics ,Quantum Physics - Abstract
Qubit reset is crucial at the start of and during quantum information algorithms. We present the experimental demonstration of a practical method to force qubits into their ground state, based on driving certain qubit and cavity transitions. Our protocol, called the double drive reset of population is tested on a superconducting transmon qubit in a three-dimensional cavity. Using a new method for measuring population, we show that we can prepare the ground state with a fidelity of at least 99.5 % in less than 3 microseconds; faster times and higher fidelity are predicted upon parameter optimization., Comment: 5 pages, 4 figures
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- 2012
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