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Total alkalinity (AT) and dissolved inorganic carbon (CT) in the oceans are important properties with respect to understanding the ocean carbon cycle and its link to global change (ocean carbon sinks and sources, ocean acidification) and ultimately finding carbon-based solutions or mitigation procedures (marine carbon removal). We present a database of more than 44 400 AT and CT observations along with basic ancillary data (spatiotemporal location, depth, temperature and salinity) from various ocean regions obtained, mainly in the framework of French projects, since 1993. This includes both surface and water column data acquired in the open ocean, coastal zones and in the Mediterranean Sea and either from time series or dedicated one-off cruises. Most AT and CT data in this synthesis were measured from discrete samples using the same closed-cell potentiometric titration calibrated with Certified Reference Material, with an overall accuracy of ±4 µmol kg−1 for both AT and CT. The data are provided in two separate datasets – for the Global Ocean and the Mediterranean Sea (https://doi.org/10.17882/95414, Metzl et al., 2023), respectively – that offer a direct use for regional or global purposes, e.g., AT–salinity relationships, long-term CT estimates, and constraint and validation of diagnostic CT and AT reconstructed fields or ocean carbon and coupled climate–carbon models simulations as well as data derived from Biogeochemical-Argo (BGC-Argo) floats. When associated with other properties, these data can also be used to calculate pH, the fugacity of CO2 (fCO2) and other carbon system properties to derive ocean acidification rates or air–sea CO2 fluxes.

Iron (Fe) is an essential micronutrient for phytoplankton, particularly diazotrophs, which are abundant in the Western Tropical South Pacific Ocean (WTSP). Their success depends on the numerous trace metals, particularly iron, released from shallow hydrothermal vents along the Tonga Arc. This study aimed to explore the impact of hydrothermal fluids on particulate trace metal concentrations and biological activity. To identify the composition of sinking particles across a wide area of the WTSP, we deployed sediment traps at various depths, both close and further west of the Tonga Arc. Seafloor sediments were cored at these deployment sites, including at a remote location in the South Pacific Gyre. The sinking particles were composed of a large amount of biological material, indicative of the high productivity of the Lau Basin. A significant portion of this material was lithogenic of hydrothermal origin, as revealed through Al-Fe-Mn tracing. The sinking material showed similar patterns between lithogenic and biogenic fractions, indicating that hydrothermal input within the photic layer triggered surface production. A hydrothermal fingerprint was suggested in the sediments due to the high sedimentation rates and the presence of large, heterogeneous, trace metal-rich particles. The presence of nearby active deep hydrothermal sources was suspected near the Lau Ridge due to the large particle size and the significant enrichment of Fe and Mn. Overall, this study revealed that deep and shallow hydrothermal sources along with submarine volcanism have a significant influence on the biogeochemical signature of particles in the Lau Basin at large spatial and temporal scales.

In the Western Tropical South Pacific (WTSP) Ocean, a hotspot of dinitrogen fixation has been identified. The survival of diazotrophs depends, among others, on the availability of dissolved iron (DFe) largely originating, as recently revealed, from shallow hydrothermal sources located along the Tonga-Kermadec arc that fertilize the Lau Basin with this element. On the opposite, these fluids, released directly close to the photic layer, can introduce numerous trace metals at concentrations that can be toxic to surface communities. Here, we performed an innovative 9-day experiment in 300 L reactors onboard the TONGA expedition, to examine the effects of hydrothermal fluids on natural plankton communities in the WTSP Ocean. Different volumes of fluids were mixed with non-hydrothermally influenced surface waters (mixing ratio from 0 to 14.5%) and the response of the communities was studied by monitoring numerous stocks and fluxes (phytoplankton biomass, community composition, net community production, N2 fixation, thiol production, organic carbon and metal concentrations in exported material). Despite an initial toxic effect of hydrothermal fluids on phytoplankton communities, these inputs led to higher net community production and N2 fixation rates, as well as elevated export of organic matter relative to control. This fertilizing effect was achieved through detoxification of the environment, rich in potentially toxic elements (e.g., Cu, Cd, Hg), likely by resistant Synechococcus ecotypes able to produce strong binding ligands, especially thiols (thioacetamide-like and glutathione-like compounds). The striking increase of thiols quickly after fluid addition likely detoxified the environment, rendering it more favorable for phytoplankton growth. Indeed, phytoplankton groups stressed by the addition of fluids were then able to recover important growth rates, probably favored by the supply of numerous fertilizing trace metals (notably Fe) from hydrothermal fluids and new n

Iron is an essential nutrient that regulates productivity in ~30% of the ocean. Compared with deep (>2000 meter) hydrothermal activity at mid-ocean ridges that provide iron to the ocean’s interior, shallow (<500 meter) hydrothermal fluids are likely to influence the surface’s ecosystem. However, their effect is unknown. In this work, we show that fluids emitted along the Tonga volcanic arc (South Pacific) have a substantial impact on iron concentrations in the photic layer through vertical diffusion. This enrichment stimulates biological activity, resulting in an extensive patch of chlorophyll (360,000 square kilometers). Diazotroph activity is two to eight times higher and carbon export fluxes are two to three times higher in iron-enriched waters than in adjacent unfertilized waters. Such findings reveal a previously undescribed mechanism of natural iron fertilization in the ocean that fuels regional hotspot sinks for atmospheric CO2.

In the Western Tropical South Pacific, a hotspot of N2-fixing organisms has recently been identified. The survival of these species depends on the availability of dissolved iron (dFe). dFe was measured along a transect from 175 °E to 166 °W near 19-21 °S. The distribution of dFe showed high spatial variability: low concentrations (~0.2 nmol kg-1) in the South Pacific gyre and high concentrations (up to 50 nmol kg-1) west of the Tonga arc, indicating that this arc is a clear boundary between iron-poor and iron-rich waters. An optimal multiparameter analysis was used to distinguish the relative importance of physical transport relative to non-conservative processes on the observed dFe distribution. This analysis demonstrated that distant sources of iron play a minor role in its distribution along the transect. The high concentrations observed were therefore attributed to shallow hydrothermal sources massively present along the Tonga-Kermadec arc. Nevertheless, in contrast to what has been observed for deep hydrothermal plumes, our results highlighted the rapid decrease in dFe concentrations near shallow hydrothermal sources. This is likely due to a shorter residence time of surface water masses combined with several biogeochemical processes at play (e.g., precipitation, photoreduction, scavenging, biological uptake). This study clearly highlights the role of shallow hydrothermal sources on the dFe cycle within the Tonga-Kermadec arc where a strong link to biological activity in surface waters can be assessed. It also emphasizes the need to consider the impact of these shallow hydrothermal sources for a better understanding of the global iron cycle.

Studies on the impact of ocean acidification on marine organisms involve exposing organisms to future acidification scenarios which has limited relevance for coastal calcifiers living in a mosaic of habitats. Identification of tipping points beyond which detrimental effects are observed is a widely generalizable proxy of acidification susceptibility at the populational level. This approach is limited to a handful of studies that focus on only a few macro-physiological traits, thus overlooking the whole organism response. Here we develop a framework to analyze the broad macro-physiological and molecular responses over a wide pH range in juvenile oyster. We identify low tipping points for physiological traits at pH 7.3-6.9 that coincide with a major reshuffling in membrane lipids and transcriptome. In contrast, a drop in pH affects shell parameters above tipping points, likely impacting animal fitness. These findings were made possible by the development of an innovative methodology to synthesize and identify the main patterns of variations in large -omic datasets, fitting them to pH and identifying molecular tipping-points. We propose the broad application of our framework to the assessment of effects of global change on other organisms.

In the oligotrophic waters of the Mediterranean Sea, during the stratification period, the microbial loop relies on pulsed inputs of nutrients through atmospheric deposition of aerosols from both natural (Saharan dust) and anthropogenic origins. While the influence of dust deposition on microbial processes and community composition is still not fully constrained, the extent to which future environmental conditions will affect dust inputs and the microbial response is not known. The impact of atmospheric wet dust deposition was studied both under present and future (warming and acidification) environmental conditions through experiments in 300 L climate reactors. Three dust addition experiments were performed with surface seawater collected from the Tyrrhenian Sea, Ionian Sea and Algerian basin in the Western Mediterranean Sea during the PEACETIME cruise in May–June 2017. Top-down controls on bacteria, viral processes and community, as well as microbial community structure (16S and 18S rDNA amplicon sequencing) were followed over the 3–4 days experiments. Different microbial and viral responses to dust were observed rapidly after addition and were most of the time higher when combined to future environmental conditions. The input of nutrients and trace metals changed the microbial ecosystem from bottom-up limited to a top-down controlled bacterial community, likely from grazing and induced lysogeny. The composition of mixotrophic microeukaryotes and phototrophic prokaryotes was also altered. Overall, these results suggest that the effect of dust deposition on the microbial loop is dependent on the initial microbial assemblage and metabolic state of the tested water, and that predicted warming, and acidification will intensify these responses, affecting food web processes and biogeochemical cycles.

Ocean acidification and warming (OAW) are pressing contemporary issues affecting marine life and specifically calcifying organisms. Here, we investigated the direct effects of OAW on life-history traits of the Pacific oyster Crassostrea gigas, the most cultivated bivalve species worldwide. We also tested whether parental conditioning history shaped the phenotypic characters of their progenies (intergenerational carryover effects). Adult oysters and their offspring were exposed to two temperatures (18°C, +3°C) under ambient pH conditions or under an end-of-century acidification scenario (−0.33 pH unit). In adults, we monitored standard biometric and reproductive parameters, stress response by quantifying neuroendocrine metabolites and gamete quality. In larvae, we measured hatching rate, size, biochemical quality, and behavior. We found that reducing pH reduced growth rate and activated the serotonin system, but increasing temperature attenuated these effects. There was no effect of pH on reproduction at either temperature, and no intergenerational carryover effects. Larval characteristics were similar between treatments, regardless of parental conditioning history. Thus, the Pacific oyster seems robust to changes in pH, and increasing temperature is not an aggravating factor. We emphasize that the use of neuroendocrine indicators holds promise for revealing sublethal impacts of environmental changes.

N2 fixation rates were measured in the 0-1000ĝ€¯m layer at 13 stations located in the open western and central Mediterranean Sea (MS) during the PEACETIME cruise (late spring 2017). While the spatial variability in N2 fixation was not related to Fe, P nor N stocks, the surface composition of the diazotrophic community indicated a strong longitudinal gradient increasing eastward for the relative abundance of non-cyanobacterial diazotrophs (NCDs) (mainly 3-Proteobacteria) and conversely decreasing eastward for photo-heterotrophic group A (UCYN-A) (mainly UCYN-A1 and UCYN-A3), as did N2 fixation rates. UCYN-A4 and UCYN-A3 were identified for the first time in the MS. The westernmost station influenced by Atlantic waters and characterized by highest stocks of N and P displayed a patchy distribution of diazotrophic activity with an exceptionally high rate in the euphotic layer of 72.1ĝ€¯nmolNL-1d-1, which could support up to 19ĝ€¯% of primary production. At this station at 1ĝ€¯%PAR (photosynthetically available radiation) depth, UCYN-A4 represented up to 94ĝ€¯% of the diazotrophic community. These in situ observations of greater relative abundance of UCYN-A at stations with higher nutrient concentrations and dominance of NCDs at more oligotrophic stations suggest that nutrient conditions-even in the nanomolar range-may determine the composition of diazotrophic communities and in turn N2 fixation rates. The impact of Saharan dust deposition on N2 fixation and diazotrophic communities was also investigated, under present and future projected conditions of temperature and pH during short-Term (3-4ĝ€¯d) experiments at three stations. New nutrients from simulated dust deposition triggered a significant stimulation of N2 fixation (from 41ĝ€¯% to 565ĝ€¯%). The strongest increase in N2 fixation was observed at the stations dominated by NCDs and did not lead on this short timescale to changes in the diazotrophic community composition. Under projected future conditions, N2 fixatio