91 results on '"Gaurav Chatterjee"'
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2. Circulating tumor plasma cells and peripheral blood measurable residual disease assessment in multiple myeloma patients not planned for upfront transplant
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Prashant R. Tembhare, Harshini Sriram, Twinkle Khanka, Sanghamitra Gawai, Bhausaheb Bagal, Sitaram G. Ghogale, Nilesh Deshpande, Karishma Girase, Jagruti Patil, Syed Khaizer Hasan, Dhanalaxmi Shetty, Kinjalka Ghosh, Gaurav Chatterjee, Sweta Rajpal, Nikhil V. Patkar, Hasmukh Jain, Sachin Punatar, Anant Gokarn, Lingaraj Nayak, Sumeet Mirgh, Nishant Jindal, Manju Sengar, Navin Khattry, Papagudi G. Subramanian, and Sumeet Gujral
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Abstract Circulating tumor plasma cells (CTPCs) provide a noninvasive alternative for measuring tumor burden in newly diagnosed multiple myeloma (NDMM). Moreover, measurable residual disease (MRD) assessment in peripheral blood (PBMRD) can provide an ideal alternative to bone marrow MRD, which is limited by its painful nature and technical challenges. However, the clinical significance of PBMRD in NDMM still remains uncertain. Additionally, data on CTPC in NDMM patients not treated with transplant are scarce. We prospectively studied CTPC and PBMRD in 141 NDMM patients using highly sensitive multicolor flow cytometry (HS‐MFC). PBMRD was monitored at the end of three cycles (PBMRD1) and six cycles (PBMRD2) of chemotherapy in patients with detectable baseline CTPC. Patients received bortezomib‐based triplet therapy and were not planned for an upfront transplant. Among baseline risk factors, CTPC ≥ 0.01% was independently associated with poor progression‐free survival (PFS) (hazard ratio [HR] = 2.77; p = 0.0047) and overall survival (OS) (HR = 2.9; p = 0.023) on multivariate analysis. In patients with detectable baseline CTPC, undetectable PBMRD at both subsequent time points was associated with longer PFS (HR = 0.46; p = 0.0037), whereas detectable PBMRD at any time point was associated with short OS (HR = 3.25; p = 0.004). Undetectable combined PBMRD (PBMRD1 and PBMRD2) outperformed the serum‐immunofixation‐based response. On multivariate analysis, detectable PBMRD at any time point was independently associated with poor PFS (HR = 2.0; p = 0.025) and OS (HR = 3.97; p = 0.013). Thus, our findings showed that CTPC and PBMRD assessment using HS‐MFC provides a robust, noninvasive biomarker for NDMM patients not planned for an upfront transplant. Sequential PBMRD monitoring has great potential to improve the impact of the existing risk stratification and response assessment models.
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- 2024
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3. P360: MEASURABLE/MINIMAL RESIDUAL DISEASE (MRD) STATUS IS THE MOST RELEVANT INDICATOR OF CLINICAL OUTCOME IN MIXED PHENOTYPIC ACUTE LEUKEMIAS (MPAL)
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Prashant Tembhare, Simpy Raj, Sitaram Ghogale, Nilesh Deshpande, Karishma Girase, Gaurav Chatterjee, Sweta Rajpal, Nikhil Patkar, Gaurav Narula, Bhausaheb Bagal, Hasmukh Jain, Manju Sengar, Shripad Banavali, Dhanlaxmi Shetty, Chetan Dhamne, Twinkle Khanka, Steffi Varghese, Shaista Jasdanwala, Navin Khattry, Papagudi G Subramanian, and Sumeet Gujral
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Published
- 2023
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4. P454: ACUTE MYELOID LEUKEMIA (AML) WITH IDH1 AND IDH2 MUTATIONS CAN BE EFFECTIVELY RISK STRATIFIED BASED ON THE PRESENCE ADVERSE RISK GENOMIC FEATURES.
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Aniket Bhide, Gaurav Chatterjee, Sweta Rajpal, Swapnali Joshi, Vishram Terse, Dhanlaxmi Shetty, Anant Gokarn, Sachin Punatar, Nishant Jindal, Bhausaheb Bagal, Lingaraj Nayak, Hasmukh Jain, Navin Khattry, Manju Sengar, Prashant Tembhare, Sumeet Gujral, Papagudi Subramanian, and Nikhil Patkar
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Published
- 2023
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5. PB1949: ROLE OF LAIR1 (CD305) IN FLOW CYTOMETRIC DETECTION OF OCCULT BONE MARROW INVOLVEMENT IN NON-CLL B-CELL NON-HODGKIN LYMPHOMA
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Sitaram Ghogale, Anu Singh, Nilesh Deshpande, Karishma Girase, Harshini Sriram, Sweta Rajpal, Gaurav Chatterjee, Nikhil Patkar, Sumeet Gujral, Papagudi G Subramanian, and Prashant Tembhare
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Published
- 2023
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6. Clinical characteristics, laboratory parameters and outcomes of COVID‐19 in cancer and non‐cancer patients from a tertiary Cancer Centre in India
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Sumeet P. Mirgh, Anant Gokarn, Akhil Rajendra, Ashwini More, Sujit Kamtalwar, Kritika S. Katti, Anuj Singh, Vasu Babu Goli, Rahul Ravind, Ravikrishna Madala, Sangeeta Kakoti, Priyamvada Maitre, Sachin Punatar, Akanksha Chichra, Amar Patil, Bhakti Trivedi, Amit Joshi, Nikhil Patkar, Prashant Tembhare, Twinkle Khanka, Sweta Rajpal, Gaurav Chatterjee, Sadhana Kannan, P.G. Subramanian, Vedang Murthy, Nitin Shetty, Preeti Chavan, Vivek Bhat, Sudhir Nair, Navin Khattry, and Sudeep Gupta
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cancer ,COVID‐19 ,non‐cancer ,outcomes ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background There is paucity of data regarding clinical characteristics, laboratory parameters and outcomes of coronavirus disease (COVID‐19) in cancer versus non‐cancer patients, particularly from India. Materials and Methods This was an observational, single‐centre, retrospective analysis of patients with laboratory‐confirmed COVID‐19 hospitalised in our institution between 22 May 2020 and 1 December 2020. We compared baseline clinical characteristics, laboratory parameters and outcomes of COVID‐19 (overall mortality, time to discharge) between cancer and non‐cancer patients. Results A total of 200 COVID‐19 infection episodes were analysed of which 109 (54.5%) were patients with cancer and 91 (45.5%) were patients without cancer. The median age was 43 (interquartile range [IQR]:32–57), 51 (IQR: 33–62) and 38 (IQR: 31.5–49.3) years; of whole cohort, cancer and non‐cancer patients, respectively. Comparison of outcomes showed that oxygen requirement (31.2% [95% CI: 22.6–40.7] vs. 17.6% [95% CI: 10.4–26.9]; p = 0.03), median time to discharge (11 days [IQR: 6.75–16] vs. 6 days [IQR: 3–9.75]; p 1 mg% (12.8% vs. 0%; p = 0.027; OR: 24.69), serum procalcitonin >0.05 ng/ml (22.65% vs. 0%; p = 0.004; OR: 4.49) and interleukin‐6 >6 pg/ml (10.8% vs. 1.3%; p = 0.036; OR: 3.08). In multivariable logistic regression, factors significantly associated with mortality were oxygen requirement (p = 0.005; OR: 13.11) and high baseline procalcitonin level (p = 0.014; OR: 37.6). Conclusion Cancer patients with COVID‐19 have higher mortality and require longer hospital stay. High procalcitonin levels and oxygen requirement during admission are other factors that affect outcomes adversely.
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- 2021
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7. Critical Role of Flow Cytometric Immunophenotyping in the Diagnosis, Subtyping, and Staging of T-Cell/NK-Cell Non-Hodgkin’s Lymphoma in Real-World Practice: A Study of 232 Cases From a Tertiary Cancer Center in India
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Prashant R. Tembhare, Gaurav Chatterjee, Anumeha Chaturvedi, Niharika Dasgupta, Twinkle Khanka, Shefali Verma, Sitaram G. Ghogale, Nilesh Deshpande, Karishma Girase, Manju Sengar, Bhausaheb Bagal, Hasmukh Jain, Dhanalaxmi Shetty, Sweta Rajpal, Nikhil Patkar, Tushar Agrawal, Sridhar Epari, Tanuja Shet, Papagudi G. Subramanian, and Sumeet Gujral
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immunophenotyping ,T cell ,non-Hodgkin’s lymphoma ,real-world practice ,flow cytometry ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundT-cell/NK-cell non-Hodgkin’s lymphoma (T/NK-NHL) is an uncommon heterogeneous group of diseases. The current classification of T/NK-NHL is mainly based on histopathology and immunohistochemistry. In practice, however, the lack of unique histopathological patterns, overlapping cytomorphology, immunophenotypic complexity, inadequate panels, and diverse clinical presentations pose a great challenge. Flow cytometric immunophenotyping (FCI) is a gold standard for the diagnosis, subtyping, and monitoring of many hematological neoplasms. However, studies emphasizing the role of FCI in the diagnosis and staging of T/NK-NHL in real-world practice are scarce.MethodsWe included T-cell non-Hodgkin’s lymphoma (T-NHL) patients evaluated for the diagnosis and/or staging of T/NK-NHL using FCI between 2014 and 2020. We studied the utility of FCI in the diagnosis and subtyping of T/NK-NHL and correlated the FCI findings with the results of histopathology/immunohistochemistry. For correlation purposes, patients were categorized under definitive diagnosis and subtyping, inadequate subtyping, inadequate diagnosis, and misdiagnosis based on the findings of each technique.ResultsA total of 232 patients were diagnosed with T/NK-NHL. FCI findings provided definitive diagnoses in 198 patients and subtyping in 187/198 (95.45%) patients. The correlation between FCI and histopathological/immunohistochemistry results (n = 150) demonstrated an agreement on the diagnosis and subtyping in 69/150 (46%) patients. Of the remaining cases, the diagnosis and subtyping were inadequate in 64/150 (42.7%), and 14/150 (9.33%) were misdiagnosed on histopathology/immunohistochemistry results. FCI provided definitive diagnosis and subtyping in 51/64 (79.7%) patients. Among these, 13 patients diagnosed with peripheral T-cell lymphoma not-otherwise-specified were reclassified (angioimmunoblastic T-cell lymphoma (AITL)-11 and prolymphocytic leukemia-2) on FCI. It corrected the diagnosis in 14 patients that were misdiagnosed (6 B-cell NHL (B-NHL), 3 Hodgkin’s lymphoma, 1 acute leukemia, and 1 subcutaneous panniculitis-like T-cell lymphoma) and misclassified (3 T-NHL) on histopathological results. AITL was the commonest T-NHL misclassified on histopathological results. FCI also confirmed the definite involvement in 7/83 (8.4%) and 27/83 (32.5%) bone marrow (BM) samples reported as suspicious and uninvolved, respectively, on histopathological evaluation.ConclusionAITL was the most frequently diagnosed T/NK-NHL in this study. FCI provided a distinct advantage in detecting BM involvement by T/NK-NHL, especially in patients with low-level involvement. Overall, our study concluded that FCI plays a critical role in the diagnosis, subtyping, and staging of T/NK-NHL in real-world practice.
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- 2022
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8. Treatment and long-term follow-up of children with Chronic Myeloid Leukemia (CML) in Chronic Phase (CP): Experience from the Tata Memorial Hospital pediatric CML cohort over 2 decades
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Nirmalya Roy Moulik, Ankita Pandey, Gaurav Chatterjee, Chetan Dhamne, Akanksha Chichra, Dhanlaxmy Shetty, Prashant Tembhare, Papagudi Subramanian, Nikhil Patkar, Gaurav Narula, and Shripad Banavali
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Pediatrics ,RJ1-570 - Published
- 2022
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9. Flow cytometric evaluation of CD38 expression levels in the newly diagnosed T-cell acute lymphoblastic leukemia and the effect of chemotherapy on its expression in measurable residual disease, refractory disease and relapsed disease: an implication for anti-CD38 immunotherapy
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Prashant Ramesh Tembhare, Harshini Sriram, Twinkle Khanka, Gaurav Chatterjee, Devasis Panda, Sitaram Ghogale, Yajamanam Badrinath, Nilesh Deshpande, Nikhil V Patkar, Gaurav Narula, Bhausaheb Bagal, Hasmukh Jain, Manju Sengar, Navin Khattry, Shripad Banavali, Sumeet Gujral, and Papagudi G Subramanian
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Background Recently, anti-CD38 monoclonal antibody (Mab) therapy has become a focus of attention as an additional/alternative option for many hematological neoplasms including T-cell acute lymphoblastic leukemia (T-ALL). It has been shown that antitumor efficacy of anti-CD38-Mab depends on the level of CD38 expression on tumor cells. Reports on CD38 expression in T-ALL are scarce, and data on the effect of cytotoxic chemotherapy on CD38 expression are limited to very few samples. Moreover, it lacks entirely in refractory disease and in adult T-ALL. We report the flow cytometric evaluation of CD38 expression in T-ALL blasts at diagnosis and the effect of cytotoxic chemotherapy on its expression in measurable residual disease (MRD), refractory disease (MRD≥5%), and relapsed disease in a large cohort of T-ALL.Methods The study included 347 samples (188 diagnostic, 100 MRD, 24 refractory and 35 relapse samples) from 196 (children: 85; adolescents/adults: 111) patients with T-ALL. CD38-positive blasts percentages (CD38-PBPs) and expression-intensity (mean fluorescent intensity, CD38-MFI) were studied using multicolor flow cytometry (MFC). MFC-based MRD was performed at the end-of-induction (EOI-MRD, day 30–35) and end-of-consolidation (EOC-MRD, day 78–85) subsequent follow-up (SFU-MRD) points.Results Patients were classified into early thymic precursor subtype of T-ALL (ETPALL, 54/188, 28.7%), and non-ETPALL (134/188, 71.3%). Of 188, EOI-MRD assessment was available in 152, EOC-MRD was available in 96 and SFU-MRD was available in 14 patients. CD38 was found positive in 97.9% (184/188) of diagnostic, 88.7% (110/124) MRD (including 24-refractory) and 82.9% (29/35) relapsed samples. Median (95% CI) of CD38-PBPs/MFI in diagnostic, MRD, refractory, and relapsed T-ALL samples were, respectively, 85.9% (82.10%–89.91%)/4.2 (3.88–4.47), 74.0% (58.87%–83.88%)/4.6 (3.67–6.81), 79.6% (65.25%–96.11%)/4.6 (3.33–8.47) and 85.2% (74.48%–93.01%)/5.6 (4.14–8.99). No significant difference was noted in CD38 expression between pediatric versus adult and patients with ETPALL versus non-ETPALL. No change was observed in CD38-MFI between diagnostic versus MRD and diagnostic versus relapsed paired samples. However, we noticed a mild drop in the CD38-PBPs in MRD samples compared with the diagnostic samples (p=0.016).Conclusion We report an in-depth analysis of CD38 expression in a large cohort of T-ALL at diagnosis, during chemotherapy, and at relapse. Our data demonstrated that CD38 is robustly expressed in T-ALL blasts with a little effect of cytotoxic chemotherapy making it a potentially effective target for antiCD38-Mab therapy.
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- 2020
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10. Post-induction Measurable Residual Disease Using Multicolor Flow Cytometry Is Strongly Predictive of Inferior Clinical Outcome in the Real-Life Management of Childhood T-Cell Acute Lymphoblastic Leukemia: A Study of 256 Patients
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Prashant R. Tembhare, Gaurav Narula, Twinkle Khanka, Sitaram Ghogale, Gaurav Chatterjee, Nikhil V. Patkar, Maya Prasad, Yajamanam Badrinath, Nilesh Deshpande, Pratyusha Gudapati, Shefali Verma, Mahima Sanyal, Florence Kunjachan, Gunit Mangang, Sumeet Gujral, Shripad Banavali, and Papagudi G. Subramanian
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measurable residual disease ,hyperleukocytosis ,early clearance ,T-cell acute lymphoblastic leukemia ,multicolor flow cytometry ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Background: Measurable/minimal residual disease (MRD) status is suggested as a powerful indicator of clinical-outcome in T-cell lymphoblastic leukemia/lymphoma (T-ALL). Contrary to B-cell ALL, reports on T-ALL MRD are limited and mostly based on molecular methods, mainly from developed countries. Multicolor flow cytometry (MFC)-based T-ALL studies are very few. Clinically relevant cut-off levels and ideal time-point for MRD assessment are still inconclusive. In view of lack of T-ALL MRD data from the developing world, we evaluated the prognostic value of MFC-based post-induction (PI)-MRD assessment in T-ALL in the context of standard practice.Methods: We included 256 childhood-T-ALL patients (age < 15 years) treated with a modified-MCP841 protocol, which uses high-dose cytarabine during consolidation, as a part of standard hospital practice. MRD was studied using 10-color 11-antibody MFC with any level of detectable disease being considered positive. Post-induction (PI)-MRD was available in all patients, and post-consolidation (PC) MRD was available mostly in PI-MRD-positive patients (n = 88).Results: Three years cumulative-incidence-of-relapse (3years-CIR) in PI-MRD-positive patients was inferior to negative patients (46.3% vs. 18.4%). The median relapse-free-survival (RFS), event-free-survival (EFS) and overall-survival (OS) with hazard ratio (HR) of PI-MRD-positive patients were 21.4 months vs not reached (p < 0.0001, HR-4.7), 21.6 months vs. not-reached (p = 0.0003, HR-2.01) and 37.3 months vs. not reached (p = 0.026, HR-1.64) respectively. RFS, EFS and OS of patients with PI-MRD
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- 2020
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11. Molecular patterns of cancer colonisation in lymph nodes of breast cancer patients
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Gaurav Chatterjee, Trupti Pai, Thomas Hardiman, Kelly Avery-Kiejda, Rodney J. Scott, Jo Spencer, Sarah E. Pinder, and Anita Grigoriadis
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Expression ,Lymph node ,Premetastatic niche ,Breast cancer ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Lymph node (LN) metastasis is an important prognostic parameter in breast carcinoma, a crucial site for tumour–immune cell interaction and a gateway for further dissemination of tumour cells to other metastatic sites. To gain insight into the underlying molecular changes from the pre-metastatic, via initial colonisation to the fully involved LN, we reviewed transcriptional research along the evolving microenvironment of LNs in human breast cancers patients. Gene expression studies were compiled and subjected to pathway-based analyses, with an emphasis on immune cell-related genes. Of 366 studies, 14 performed genome-wide gene expression comparisons and were divided into six clinical-biological scenarios capturing different stages of the metastatic pathway in the LN, as follows: metastatically involved LNs are compared to their patient-matched primary breast carcinomas (scenario 1) or the normal breast tissue (scenario 2). In scenario 3, uninvolved LNs were compared between LN-positive patients and LN-negative patients. Scenario 4 homed in on the residual uninvolved portion of involved LNs and compared it to the patient-matched uninvolved LNs. Scenario 5 contrasted uninvolved and involved LNs, whilst in scenario 6 involved (sentinel) LNs were assessed between patients with other either positive or negative LNs (non-sentinel). Gene lists from these chronological steps of LN metastasis indicated that gene patterns reflecting deficiencies in dendritic cells and hyper-proliferation of B cells parallel to tumour promoting pathways, including cell adhesion, extracellular matrix remodelling, cell motility and DNA repair, play key roles in the changing microenvironment of a pro-metastatic to a metastatically involved LN. Similarities between uninvolved LNs and the residual uninvolved portion of involved LNs hinted that LN alterations expose systemic tumour-related immune responses in breast cancer patients. Despite the diverse settings, gene expression patterns at different stages of metastatic colonisation in LNs were recognised and may provide potential avenues for clinical interventions to counteract disease progression for breast cancer patients.
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- 2018
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12. Utility of Immunophenotypic Measurable Residual Disease in Adult Acute Myeloid Leukemia—Real-World Context
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Nikhil Patkar, Chinmayee Kakirde, Prasanna Bhanshe, Swapnali Joshi, Shruti Chaudhary, Yajamanam Badrinath, Sitaram Ghoghale, Nilesh Deshpande, Shraddha Kadechkar, Gaurav Chatterjee, Sadhana Kannan, Dhanalaxmi Shetty, Anant Gokarn, Sachin Punatkar, Avinash Bonda, Lingaraj Nayak, Hasmukh Jain, Bhausaheb Bagal, Hari Menon, Manju Sengar, Syed Hasan Khizer, Navin Khattry, Prashant Tembhare, Sumeet Gujral, and Papagudi Subramanian
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measurable residual disease ,acute myeloid leukemia ,FCM MRD ,real-world data AML ,AML MRD ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Introduction: One of the mainstays of chemotherapy in acute myeloid leukemia (AML) is induction with a goal to achieve morphological complete remission (CR). However, not all patients by this remission criterion achieve long-term remission and a subset relapse. This relapse is explained by the presence of measurable residual disease (MRD).Methods: We accrued 451 consecutive patients of adult AML (from March 2012 to December 2017) after informed consent. All patients received standard chemotherapy. MRD testing was done at post-induction and, if feasible, post-consolidation using 8- and later 10-color FCM. Analysis of MRD was done using a combination of difference from normal and leukemia-associated immunophenotype approaches. Conventional karyotyping and FISH were done as per standard recommendations, and patients were classified into favorable, intermediate, and poor cytogenetic risk groups. The presence of FLT3-ITD, NPM1, and CEBPA mutations was detected by a fragment length analysis-based assay.Results: As compared to Western data, our cohort of patients was younger with a median age of 35 years. There were 62 induction deaths in this cohort (13.7%), and 77 patients (17.1%) were not in morphological remission. The median follow-up was 26.0 months. Poor-risk cytogenetics and the presence of FLT3-ITD were significantly associated with inferior outcome. The presence of post-induction MRD assessment was significantly associated with adverse outcome with respect to OS (p = 0.01) as well as RFS (p = 0.004). Among established genetic subgroups, detection of MRD in intermediate cytogenetic and NPM1 mutated groups was also highly predictive of inferior outcome. On multivariate analysis, immunophenotypic MRD at the end of induction and FLT3-ITD emerged as independent prognostic factors predictive for outcome.Conclusion: This is the first data from a resource-constrained real-world setting demonstrating the utility of AML MRD as well as long-term outcome of AML. Our data is in agreement with other studies that determination of MRD is extremely important in predicting outcome. AML MRD is a very useful guide for guiding post-remission strategies in AML and should be incorporated into routine treatment algorithms.
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- 2019
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13. Histopathological study of adrenocortical masses with special references to Weiss score, Ki-67 index and p53 status
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Gautam Mukherjee, Chhanda Datta, Uttara Chatterjee, Moumita Sengupta, Gaurav Chatterjee, Malay Bera, and Subhankar Chowdhury
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Adrenocortical mass ,Ki-67 ,p53 ,Weiss criteria ,Pathology ,RB1-214 ,Microbiology ,QR1-502 - Abstract
Background: Adrenal mass present with wide morphological spectrum and clinical manifestation, which can give rise to diagnostic confusion. Proper categorization is essential for individualized treatment. Aim and Objective: (1) Application of Weiss criteria to differentiate between benign and malignant adrenocortical neoplasm (2) co-relation of Ki-67 and p53 expression with the Weiss score. Materials and Methods: A prospective, observational study was conducted in the Department of Pathology in collaboration with department of Endocrinology and Urology of a tertiary care hospital including 19 patients presented with clinically symptomatic or radiologically detected adrenocortical mass. Tissue for histopathological study was obtained in the form of the postoperative material. Histopathological categorization was done, and Weiss score was calculated in all tumors. Ki-67 and p53 immunohistochemistry were performed. Result: A total 19 cases of adrenal mass lesions were included. Cushing syndrome was the presenting symptoms in 26.3% adrenocortical masses. All patients with tumors with Weiss′s score 3 (Group 2). Statistically significance difference was noted in average weights and size of the tumors. Distribution of Ki-67 and p53 expression between Group 1 and Group 2 were compared and found statistically highly significant with Fisher′s two-tailed P < 0.001. Conclusion: The combination of the meticulous evaluation of clinical, morphological and immunohistochemical profile helps in proper categorization of adrenocortical mass.
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- 2015
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14. A cost-effective, high sensitivity 10-color single tube flow-cytometry (FC) based B-cell precursor acute lymphoblastic leukemia (BCPALL) minimal residual disease (MRD) assay
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Dilshad Dhaliwal, Gaurav Chatterjee, Sitaram Ghogale, Nilesh Deshpande, Y. Badrinath, Sumeet Gujral, P.G. Subramanian, Shripad Banawali, Gaurav Narula, Brijesh Aurora, and Prashant Tembhare
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Pediatrics ,RJ1-570 - Published
- 2016
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15. Analytical modeling and simulation of lattice-matched Ferro PZT AlGaN/GaN MOSHEMT for high-power and RF/Microwave applications
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Abdul Naim Khan, S. N. Mishra, S. Routray, Gaurav Chatterjee, and K. Jena
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Modeling and Simulation ,Electrical and Electronic Engineering ,Atomic and Molecular Physics, and Optics ,Electronic, Optical and Magnetic Materials - Abstract
In this paper we have developed an analytical model for Ferro PZT Al2O3/AlGaN/AlN/GaN MOSHEMT involving the solution of Poisson and Schrodinger equations. This analytical model covers most of the operating¨ regimes of the Ferro PZT MOSHEMT. The two-dimensional electron gas (2-DEG) sheet charge density (ns), threshold voltage (Vth), drain current (Ids), gate capacitance (Cgs and Cgd), and unit gain cut-off frequency(fT) model equations are generated and simulated with MATLAB tool. It is also observed that the insertion of the Ferro Pb(Zr, Ti)O3 PZT (lead zirconium titanate) material can also improve the device performance. The proposed Ferro PZT MOSHEMT model accurately produces a higher drain current of 1.14A/mm, a high transconductance of 362S/mm, the gate-to-source capacitance of 50.99pF, the gate-to-drain capacitance of 38.25pF, and high cut-off frequency of 0.033THz for 20nm AlGaN barrier layer. The proposed model results show good agreement with the TCAD-Atlas simulation results and were satisfactory for the different AlGaN barrier layer thickness. The generated model and simulation results show the potential of using the Ferro PZT MOSHEMT for high-power and RF/Microwave applications.
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- 2023
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16. Detecting hypodiploidy with endoreduplication and masked hypodiploidy in B‐cell acute lymphoblastic leukemia using multicolor flow cytometry
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Anumeha Chaturvedi, Dhanalaxmi Shetty, Sitaram Gundu Ghogale, Nilesh Deshpande, Yajamanam Badrinath, Gaurav Chatterjee, Karishma Girase, Harshini Sriram, Twinkle Khanka, Chetna Mishra, Niharika Dasgupta, Sejal Anil Gujarathi, Sweta Rajpal, Nikhil Patkar, Prathibha Amare‐Kadam, Sumeet Gujral, Papagudi Ganesan Subramanian, and Prashant Ramesh Tembhare
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Histology ,Humans ,DNA ,Cell Biology ,Endoreduplication ,Precursor Cell Lymphoblastic Leukemia-Lymphoma ,Aneuploidy ,Flow Cytometry ,Burkitt Lymphoma ,Pathology and Forensic Medicine - Abstract
Multicolor flow cytometry-based DNA-ploidy (MFC-ploidy) analysis is a simple, sensitive, and popular method for ploidy analysis in B-cell acute lymphoblastic leukemia (B-ALL). However, the utility of MFC-ploidy in the detection of B-ALL with endoreduplication or masked hypodiploidy has not been reported. Herein, we studied the patterns of MFC-ploidy assessment and its utility to detect B-ALL with hypodiploidy and endoreduplication.MFC-ploidy analysis was performed using FxCycle Violet-dye-based method, and cytogenetic ploidy was evaluated using chromosomal-counting and FISH analysis. A total of 20 B-ALL cases with endoreduplication were studied for the patterns of MFC-ploidy analysis and compared with 250 patients with hyperdiploidy and 11 cases with pure hypodiploidy.All B-ALL with endoreduplication revealed two distinct peaks (populations) on MFC-ploidy analysis: the first (hypodiploid) peak (median-DNA-index [DI], 0.82; range, 0.6-0.95) and the second (hyperdiploid) peak with almost twice DI (median-DI, 1.53; range, 1.14-1.75). Cytogenetic findings were available in 19 cases and confirmed hypodiploidy with endoreduplication in 13/19 (68.4%) and only hypodiploidy in 3/19 cases. The remaining three cases showed hyperdiploid blasts in cytogenetic studies. Of these three, two cases had10% blasts population with hypodiploidy. Thus, masked-hypodiploidy could be diagnosed correctly in 3/19 cases on MFC-ploidy analysis.MFC-ploidy analysis shows a characteristic pattern of DNA-ploidy in samples with endoreduplication. It allows the distinction between samples with masked hypodiploidy from true hyperdiploidy. An integrated approach involving cytogenetic and MFC-ploidy detection is very helpful in the risk stratification of B-ALL in routine clinical practice.
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- 2022
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17. RF/Analog and Linearity Performance Evaluation of Lattice-matched Ultra-thin AlGaN/GaN Gate Recessed MOSHEMT with Silicon Substrate
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Abdul Naim Khan, S. Routray, Kanjalochan Jena, and Gaurav Chatterjee
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Lattice (module) ,Materials science ,Silicon ,chemistry ,business.industry ,chemistry.chemical_element ,Optoelectronics ,Linearity ,Algan gan ,Substrate (electronics) ,business ,Electronic, Optical and Magnetic Materials - Abstract
In this article, the Authors have demonstrated and analyzed various analog/RF and linearity performance of a AlGaN/GaN gate recessed MOSHEMT (GR-MOSHEMT) grown on a Si substrate with mathematical modeling based TCAD simulation. Specifically, a Al2O3 dielectric GR-MOSHEMT has shown tremendous potential in terms of AC/DC figure of merits (FOM’s) such as low leakage current, high transconductance, high Ion/Ioff current ratio and excellent linear properties corresponding to conventional AlGaN/GaN HEMT and MOSHEMT. The figure-of-merit metrics such as VIP2, VIP3, IIP3 and IDM3 are performed for different drain to source voltages (VDS) of 2.5V, 5V and 10V. All the modeling and simulation results are generated by Commercial Silvaco TCAD and found to be satisfactory in terms of high frequency and power applications. The present GR-MOSHEMT device shows a superior performance with a threshold voltage of 0.5V, Current density of 888 mA, high transconductance of 225 mS/mm and high unit gain cut-off frequency of 0.91GHz. The results of the developed AlGaN/GaN GR-MOSHEMT considerably improves the device performance and also suitable for high power distortion less RF applications.
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- 2022
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18. Triple Trouble: Disseminated Penicilliosis in a Cancer patient with COVID-19
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Sujeet Kamtalwar, Sumeet Mirgh, Ashwini More, Anant Gokarn, Sachin Dhumal, Palak Sharma, Sujata Lall, Nikhil Patkar, Nitin Shetty, Gaurav Chatterjee, Sweta Rajpal, Vivek Bhat, Navin Khattry, and Sudeep Gupta
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Oncology ,Pediatrics, Perinatology and Child Health - Abstract
Penicilliosis is a fungal infection caused by the fungus Penicillium marneffei or Talaromyces marneffei. Penicillosis is commonly seen in immunocompromised patients such as in HIV(AIDS). Herein, we present a case of penicilliosis in an oral cavity cancer patient who was admitted for the management of SARS-CoV-2 infection at our hospital. A 50-year-old male patient operated on for squamous cell carcinoma of the oral cavity who completed his adjuvant chemoradiation 2 months ago, presented to our hospital with dry cough for more than 3 weeks. His nasopharyngeal swab was positive for the severe acute respiratory distress syndrome (SARS-CoV-2). During his hospital stay for SARS-CoV-2 infection, he was diagnosed with disseminated penicilliosis. The patient was treated with intravenous antifungals caspofungin and voriconazole. However, he succumbed to disseminated fungal sepsis. This case highlights the need to consider penicilliosis as a possible opportunistic pathogen, especially in immunocompromised patients such as cancer.
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- 2023
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19. Clinical characteristics, laboratory parameters and outcomes of COVID‐19 in cancer and non‐cancer patients from a tertiary Cancer Centre in India
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Akanksha Chichra, Papagudi Ganesan Subramanian, Navin Khattry, Amar Patil, Nikhil Patkar, Prashant Tembhare, Anant Gokarn, Ashwini More, Rahul Ravind, Gaurav Chatterjee, Sudhir Nair, Sweta Rajpal, Ravikrishna Madala, Preeti Chavan, Vedang Murthy, Akhil Rajendra, Kritika S Katti, Bhakti Trivedi, Sadhana Kannan, Vivek Bhat, Anuj Singh, Sudeep Gupta, Sachin Punatar, Sangeeta Kakoti, Sumeet Prakash Mirgh, Nitin Shetty, Sujit Kamtalwar, Vasu Babu Goli, Twinkle Khanka, Priyamvada Maitre, and Amit Joshi
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Adult ,Male ,Cancer Research ,medicine.medical_specialty ,Coronavirus disease 2019 (COVID-19) ,Non cancer ,India ,Disease ,Logistic regression ,outcomes ,Procalcitonin ,Tertiary Care Centers ,non‐cancer ,Risk Factors ,Interquartile range ,COVID‐19 ,Neoplasms ,Internal medicine ,Humans ,Medicine ,cancer ,Radiology, Nuclear Medicine and imaging ,Research Articles ,RC254-282 ,Retrospective Studies ,business.industry ,COVID-19 ,Cancer ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Middle Aged ,medicine.disease ,Hospitalization ,Oncology ,Cohort ,Female ,business ,Research Article - Abstract
Background There is paucity of data regarding clinical characteristics, laboratory parameters and outcomes of coronavirus disease (COVID‐19) in cancer versus non‐cancer patients, particularly from India. Materials and Methods This was an observational, single‐centre, retrospective analysis of patients with laboratory‐confirmed COVID‐19 hospitalised in our institution between 22 May 2020 and 1 December 2020. We compared baseline clinical characteristics, laboratory parameters and outcomes of COVID‐19 (overall mortality, time to discharge) between cancer and non‐cancer patients. Results A total of 200 COVID‐19 infection episodes were analysed of which 109 (54.5%) were patients with cancer and 91 (45.5%) were patients without cancer. The median age was 43 (interquartile range [IQR]:32–57), 51 (IQR: 33–62) and 38 (IQR: 31.5–49.3) years; of whole cohort, cancer and non‐cancer patients, respectively. Comparison of outcomes showed that oxygen requirement (31.2% [95% CI: 22.6–40.7] vs. 17.6% [95% CI: 10.4–26.9]; p = 0.03), median time to discharge (11 days [IQR: 6.75–16] vs. 6 days [IQR: 3–9.75]; p 1 mg% (12.8% vs. 0%; p = 0.027; OR: 24.69), serum procalcitonin >0.05 ng/ml (22.65% vs. 0%; p = 0.004; OR: 4.49) and interleukin‐6 >6 pg/ml (10.8% vs. 1.3%; p = 0.036; OR: 3.08). In multivariable logistic regression, factors significantly associated with mortality were oxygen requirement (p = 0.005; OR: 13.11) and high baseline procalcitonin level (p = 0.014; OR: 37.6). Conclusion Cancer patients with COVID‐19 have higher mortality and require longer hospital stay. High procalcitonin levels and oxygen requirement during admission are other factors that affect outcomes adversely., This is the first data from India, describing comparison of cancer and non‐cancer patients with COVID‐19 treated with a uniform protocol. It shows that cancer patients with COVID‐19 have higher mortality and require longer hospital stay. High procalcitonin levels and oxygen requirement during admission are factors that adversely affect outcomes.
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- 2021
20. Highly Sensitive ?R/R Measurement System for Nano-electro-Mechanical Cantilever Based Bio-sensors.
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Sandeep Goud Surya, Sudip Nag, Avil J. Fernandes, Sahir Gandhi, Dilip Agarwal, Gaurav Chatterjee, and V. Ramgopal Rao
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- 2011
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21. Factors Affecting the Usage of Wearable Device Technology for Healthcare among Indian Adults: A Cross-Sectional Study
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Vathsala Patil, Deepak Kumar Singhal, Nithesh Naik, B. M. Zeeshan Hameed, Milap J. Shah, Sufyan Ibrahim, Komal Smriti, Gaurav Chatterjee, Ameya Kale, Anshika Sharma, Rahul Paul, Piotr Chłosta, and Bhaskar K. Somani
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wearable healthcare devices ,fitness devices ,wearable technology ,infotainment ,mobile health ,General Medicine - Abstract
Background: Wearable device technology has recently been involved in the healthcare industry substantially. India is the world’s third largest market for wearable devices and is projected to expand at a compound annual growth rate of ~26.33%. However, there is a paucity of literature analyzing the factors determining the acceptance of wearable healthcare device technology among low-middle-income countries. Methods: This cross-sectional, web-based survey aims to analyze the perceptions affecting the adoption and usage of wearable devices among the Indian population aged 16 years and above. Results: A total of 495 responses were obtained. In all, 50.3% were aged between 25–50 years and 51.3% belonged to the lower-income group. While 62.2% of the participants reported using wearable devices for managing their health, 29.3% were using them daily. technology and task fitness (TTF) showed a significant positive correlation with connectivity (r = 0.716), health care (r = 0.780), communication (r = 0.637), infotainment (r = 0.598), perceived usefulness (PU) (r = 0.792), and perceived ease of use (PEOU) (r = 0.800). Behavioral intention (BI) to use wearable devices positively correlated with PEOU (r = 0.644) and PU (r = 0.711). All factors affecting the use of wearable devices studied had higher mean scores among participants who were already using wearable devices. Male respondents had significantly higher mean scores for BI (p = 0.034) and PEOU (p = 0.009). Respondents older than 25 years of age had higher mean scores for BI (p = 0.027) and Infotainment (p = 0.032). Conclusions: This study found a significant correlation with the adoption and acceptance of wearable devices for healthcare management in the Indian context.
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- 2022
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22. United we stand, divided we fall. Multicentre standardization of measurable residual disease assessment in acute leukaemia is the way forward
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Gaurav Chatterjee and Nikhil Patkar
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Hematology - Abstract
Assessment of measurable residual disease (MRD) using multiparameter flow cytometry in precursor B-cell acute lymphoblastic leukaemia (ALL) is routine. However, studies on the harmonization of laboratory techniques as well as on the interpretation of results are limited. Here, Ikoma-Colturato and colleagues from Brazil demonstrate multicentric standardization of B-ALL MRD using EuroFlow protocols.
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- 2022
23. Expression levels and patterns of B-cell maturation antigen in newly diagnosed and relapsed multiple myeloma patients from Indian subcontinent
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Harshini Sriram, Florence Kunjachan, Twinkle Khanka, Sangamitra Gawai, Sitaram Ghogale, Nilesh Deshpande, Karishma Girase, Jagruti Patil, Gaurav Chatterjee, Sweta Rajpal, Nikhil V. Patkar, Bhausaheb Bagal, Hasmukh Jain, Manju Sengar, Syed Khizer Hasan, Navin Khattry, Papagudi G. Subramanian, Sumeet Gujral, and Prashant R. Tembhare
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Adult ,Male ,Histology ,Cell Biology ,Middle Aged ,Flow Cytometry ,Immunotherapy, Adoptive ,Pathology and Forensic Medicine ,Humans ,Female ,B-Cell Maturation Antigen ,Neoplasm Recurrence, Local ,Multiple Myeloma ,Aged - Abstract
Many novel therapies are being evaluated for the treatment of Multiple myeloma (MM). The cell-surface protein B-cell maturation antigen (BCMA, CD269) has recently emerged as a promising target for CAR-T cell and monoclonal-antibody therapies in MM. However, the knowledge of the BCMA expression-pattern in myeloma patients from the Indian subcontinent is still not available. We present an in-depth study of BCMA expression-pattern on abnormal plasma cells (aPC) in Indian MM patients.We studied BM samples from 217 MM patients (211-new and 6-relapsed) with a median age of 56 years (range, 30-78 yearsM:F-2.29) and 20 control samples. Expression levels/patterns of CD269 (clone-19f2) were evaluated in aPCs from MM patients and in normal PCs (nPC) from uninvolved staging bone marrow samples (controls) using multicolor flow cytometry (MFC). Expression-level of CD269 was determined as a ratio of mean fluorescent intensity (MFI-R) of CD269 in PCs to that of non-B-lymphocytes and expression-pattern (homogenous/heterogeneous) as coefficient-of-variation of immunofluorescence (CVIF).Median (range) percentage of CD269-positive abnormal-PCs in total PCs was 71.6% (0.49-99.29%). The MFI-R (median, range) of CD269 was significantly higher in aPCs (4.13, 1.12-26.88) than nPCs (3.33, 1.23-12.87), p .0001. Median (range) MFI of CD269 at diagnosis and relapse were 2.39 (0.77-9.57) and 2.66 (2.15-3.23) respectively. CD269 levels were similar at diagnosis and relapse, p = .5529.We demonstrated that BCMA/CD269 is highly expressed in aPCs from a majority of MM patients, both at diagnosis and relapse. Thus, BCMA is a valuable target for therapy for Indian MM patients.
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- 2022
24. Clinical impact of panel-based error-corrected next generation sequencing versus flow cytometry to detect measurable residual disease (MRD) in acute myeloid leukemia (AML)
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Manju Sengar, Rakhi Salve, Chinmayee Kakirde, Prasanna Bhanshe, Papagudi Ganesan Subramanian, Anam Fatima Shaikh, Shruti Chaudhary, Bhausaheb Bagal, Rohan Kodgule, Hasmukh Jain, Sitaram Ghoghale, Nikhil Patkar, Syed Hasan Khizer, Sumeet Gujral, Prashant Tembhare, Nilesh Deshpande, Sweta Rajpal, Swapnali Joshi, Gaurav Chatterjee, Hari Menon, Navin Khattry, and Dhanalaxmi Shetty
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Adult ,Male ,Oncology ,Cancer Research ,medicine.medical_specialty ,Neoplasm, Residual ,Myeloid ,Adolescent ,Article ,Flow cytometry ,Young Adult ,Text mining ,Recurrence ,hemic and lymphatic diseases ,Internal medicine ,Cancer genomics ,medicine ,Humans ,Neoplasm ,Cumulative incidence ,Young adult ,medicine.diagnostic_test ,business.industry ,Hematopoietic Stem Cell Transplantation ,High-Throughput Nucleotide Sequencing ,Myeloid leukemia ,Hematology ,Middle Aged ,Translational research ,Flow Cytometry ,medicine.disease ,body regions ,Leukemia, Myeloid, Acute ,Leukemia ,medicine.anatomical_structure ,Mutation ,Disease Progression ,Female ,business - Abstract
We accrued 201 patients of adult AML treated with conventional therapy, in morphological remission, and evaluated MRD using sensitive error-corrected next generation sequencing (NGS-MRD) and multiparameter flow cytometry (FCM-MRD) at the end of induction (PI) and consolidation (PC). Nearly 71% of patients were PI NGS-MRD+ and 40.9% PC NGS-MRD+ (median VAF 0.76%). NGS-MRD+ patients had a significantly higher cumulative incidence of relapse (p = 0.003), inferior overall survival (p = 0.001) and relapse free survival (p − patients. NGS-MRD was predictive of inferior outcome in intermediate cytogenetic risk and demonstrated potential in favorable cytogenetic risk AML. PI NGS-MRD− patients had a significantly improved survival as compared to patients who became NGS-MRD− subsequently indicating that kinetics of NGS-MRD clearance was of paramount importance. NGS-MRD identified over 80% of cases identified by flow cytometry at PI time point whereas FCM identified 49.3% identified by NGS. Only a fraction of cases were NGS-MRD− but FCM-MRD+. NGS-MRD provided additional information of the risk of relapse when compared to FCM-MRD. We demonstrate a widely applicable, scalable NGS-MRD approach that is clinically informative and synergistic to FCM-MRD in AML treated with conventional therapies. Maximum clinical utility may be leveraged by combining FCM and NGS-MRD modalities.
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- 2021
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25. Expression of CD304/neuropilin‐1 in adult b‐cell lymphoblastic leukemia/lymphoma and its utility for the measurable residual disease assessment
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Sumeet Gujral, Hasmukh Jain, Dhanlaxmi Shetty, Sachin Punatar, Manju Senger, Nilesh Deshpande, Nikhil Patkar, Anumeha Chaturvedi, Sitaram Ghogale, Papagudi Ganesan Subramanian, Karishma Girase, Anant Gokarn, Bhausaheb Bagal, Avinash Bonda, Navin Khattry, Vishesh Dudakia, Gaurav Chatterjee, and Prashant Tembhare
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Adult ,Male ,medicine.medical_specialty ,Neoplasm, Residual ,Adolescent ,Coefficient of variation ,Clinical Biochemistry ,B-Cell Lymphoblastic Leukemia ,030204 cardiovascular system & hematology ,Immunofluorescence ,Gastroenterology ,Flow cytometry ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Bone Marrow ,Precursor B-Cell Lymphoblastic Leukemia-Lymphoma ,hemic and lymphatic diseases ,Internal medicine ,Neuropilin 1 ,Biomarkers, Tumor ,medicine ,Humans ,Aged ,medicine.diagnostic_test ,business.industry ,Biochemistry (medical) ,Hematology ,General Medicine ,Middle Aged ,medicine.disease ,Neuropilin-1 ,Lymphoma ,body regions ,medicine.anatomical_structure ,Female ,Disease assessment ,Bone marrow ,business ,030215 immunology - Abstract
INTRODUCTION Many new markers are being evaluated to increase the sensitivity and applicability of multicolor flow cytometry (MFC)-based measurable residual disease (MRD) monitoring. However, most of the studies are limited to childhood B-cell lymphoblastic leukemia/lymphoma (B-ALL), and reports in adult B-ALL are extremely scarce and limited to small cohorts. We studied the expression of CD304/neuropilin-1 in a large cohort of adult B-ALL patients and evaluated its practical utility in MFC-based MRD analysis. METHODS CD304 was studied in blasts from adult B-ALL patients and normal precursor B cells (NPBC) from non-B-ALL bone marrow samples using MFC. CD304 expression intensity and pattern were studied with normalized-mean fluorescent intensity (nMFI) and coefficient of variation of immunofluorescence (CVIF), respectively. MFC-based MRD was performed at end of induction (EOI; day-35), end of consolidation (EOC; day 78-80), and subsequent follow-up (SFU) time points. RESULTS CD304 was positive in 120/214(56.07%) and was significantly associated with BCR-ABL1 fusion (P = .001). EOI-MRD and EOC-MRD were positive in 129/214(60.3%) and 50/81(61.72%), respectively. CD304 was positive in a significant percentage of EOI (48%, 62/129) and EOC (52%, 26/50) MRD-positive B-ALL samples. Its expression was retained, lost, and gained in 73.7%, 26.3%, and 11.3% of EOI-MRD and 85.7%, 14.3%, and none of EOC-MRD samples, respectively. Low-level MRD (
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- 2021
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26. Serum microRNA Signature Predicting Poor Therapeutic Response to Bortezomib-Based Therapy and Clinical Outcome in Newly Diagnosed Multiple Myeloma: A Result of miRNA Profiling By Deep Sequencing
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Harshini Sriram, Twinkle Khanka, Sanghamitra Gawai, Sitaram Ghogale, Nilesh Deshpande, Shipra Sharma, Sanchi Shah, Anirvan Chatterjee, Gaurav Chatterjee, Sweta Rajpal, Nikhil Patkar, Syed Khizer Hasan, Bhausaheb Bagal, Hasmukh Jain, Dhanlaxmi Lalit Shetty, Nitin Inamdar, Sachin Punatar, Anant Gokarn, Manju Sengar, Navin Khattry, Papagudi Ganesan Subramanian, Sumeet Gujral, and Prashant R. Tembhare
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Immunology ,Cell Biology ,Hematology ,Biochemistry - Published
- 2022
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27. Circulating Clonal Plasma Cells at Diagnosis and Peripheral Blood Measurable Residual Disease Assessment Provide Powerful Prognostication Biomarkers in Newly-Diagnosed Multiple Myeloma Patients Treated without Autologous Transplant
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Prashant Ramesh Tembhare, Harshini Sriram, Twinkle Khanka, Sanghamitra Gawai, Sitaram Ghogale, Nilesh Deshpande, Bhausaheb Bagal, Gaurav Chatterjee, Syed Khizer Hasan, Sweta Rajpal, Nikhil Patkar, Hasmukh Jain, Dhanlaxmi Lalit Shetty, Kinjalka Ghosh, Nitin Inamdar, Sachin Punatar, Anant Gokarn, Manju Sengar, Navin Khattry, Papagudi Ganesan Subramanian, and Sumeet Gujral
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Immunology ,Cell Biology ,Hematology ,Biochemistry - Published
- 2022
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28. A Low-Power Instrumentation System for Nano-Electro-Mechanical-Sensors for Environmental and Healthcare Applications.
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Sandeep Goud Surya, Sudip Nag, Nikhil M. Duragkar, Dilip Agarwal, Gaurav Chatterjee, Sahir Gandhi, Sheetal Patil, Dinesh Kumar Sharma, and V. Ramgopal Rao
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- 2012
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29. Machine learning derived genomics driven prognostication for acute myeloid leukemia with RUNX1-RUNX1T1
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Nirmalya Roy Moulik, Anam Fatima Shaikh, Gaurav Chatterjee, Chinmayee Kakirde, Shruti Chaudhary, Nikhil Patkar, Prashant Tembhare, Subramanian P G, Chetan Dhamne, Maya Prasad, Avinash Bonda, Sumeet Gujral, Bhausaheb Bagal, Hasmukh Jain, Lingaraj Nayak, Shripad Banavali, Navin Khattry, Anant Gokarn, Prasanna Bhanshe, Swapnali Joshi, Dhanalaxmi Shetty, Sachin Punatkar, Gaurav Narula, and Manju Sengar
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Neuroblastoma RAS viral oncogene homolog ,Cancer Research ,business.industry ,Myeloid leukemia ,Genomics ,Hematology ,Biology ,Machine learning ,computer.software_genre ,DNA sequencing ,03 medical and health sciences ,0302 clinical medicine ,Oncology ,hemic and lymphatic diseases ,030220 oncology & carcinogenesis ,Runx1 runx1t1 ,Cohort ,Mutation (genetic algorithm) ,Artificial intelligence ,business ,computer ,030215 immunology - Abstract
Panel based next generation sequencing was performed on a discovery cohort of AML with RUNX1-RUNX1T1. Supervised machine learning identified NRAS mutation and absence of mutations in ASXL2, RAD21, ...
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- 2020
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30. Mast cell differentiation of leukemic blasts in diverse myeloid neoplasms: A potential pre‐myelomastocytic leukemia condition
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Rohan Sardana, Gaurav Chatterjee, Twinkle Khanka, Yajamanam Badrinath, Papagudi Ganesan Subramanian, Sumeet Gujral, Sitaram Ghogale, Anumeha Chaturvedi, Sweta Rajpal, Devasis Panda, Nikhil Patkar, Nilesh Deshpande, Dhanalaxmi Shetty, and Prashant Tembhare
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Adult ,Male ,0301 basic medicine ,Pathology ,medicine.medical_specialty ,Histology ,Mast cell differentiation ,Myeloid ,Adolescent ,CD33 ,Chronic myelomonocytic leukemia ,Immunophenotyping ,Pathology and Forensic Medicine ,Myeloid Neoplasm ,03 medical and health sciences ,0302 clinical medicine ,Mastocytosis, Systemic ,Antigens, CD ,Bone Marrow ,hemic and lymphatic diseases ,medicine ,Humans ,Mast Cells ,Child ,Aged ,Myeloproliferative Disorders ,business.industry ,Myeloid leukemia ,Cell Differentiation ,Leukemia, Myelomonocytic, Chronic ,Cell Biology ,Middle Aged ,medicine.disease ,Leukemia, Myeloid, Acute ,Leukemia ,030104 developmental biology ,medicine.anatomical_structure ,Primary Myelofibrosis ,Hematologic Neoplasms ,030220 oncology & carcinogenesis ,Female ,business - Abstract
INTRODUCTION Myeloid neoplasm with blasts showing mast cell (MC)-differentiation and MC-component less than 10% of all nucleated cells but not fulfilling the criteria for systemic mastocytosis with associated hematological neoplasm (SM-AHN) or myelomastocytic leukemia (MML) has not been described in the literature. Herein, we report a study of diverse myeloid malignancies with blasts showing MC-differentiation but not meeting the criteria for SM-AHN or MML. We also evaluated the utility of flow-cytometric immunophenotyping (FCI) in the characterization of immature-MCs (iMCs). METHODS We identified nine patients of myeloid neoplasms and studied their morphological, FCI, immunohistochemistry, cytogenetic and molecular characteristics. We also compared the immunophenotypic features of MCs from patient samples with control samples. RESULTS The study included patients with newly-diagnosed acute myeloid leukemia (n = 4), chronic myelomonocytic leukemia (n = 1), and chronic myeloid leukemia on follow-up (n = 4) showing MC differentiation in leukemic-blasts. These patients had mildly increased MCs (range, 0.5%-3%) in bone-marrow morphology, including immature-forms and did not meet the criteria for either SM-AHN or MML. On FCI, iMCs were positive for bright-CD117, heterogeneous-CD34, dim-to-negative-HLADR, and moderate-CD203c expression. Expression-levels of CD123 and CD38 were higher (p
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- 2020
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31. Improved Analog Performance of PZT Ferroelectric AlGaN/AlN/GaN E-Mode GR-MOSHEMT
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Abdul Naim Khan, Meenakshi Chauhan, K. Jena, and Gaurav Chatterjee
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- 2022
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32. N Gene Target Failure (NGTF) for detection of Omicron: a way out for the ‘stealth’ too?
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Shivangi Harankhedkar, Gaurav Chatterjee, Sweta Rajpal, Afreen Khan, Tuhina Srivastava, Sumeet Mirgh, Anant Gokarn, Sachin Punatar, Nitin Shetty, Amit Joshi, Sudhir Nair, Vedang Murthy, Prashant Tembhare, Ashwini More, Sujeet Kamtalwar, Preeti Chavan, Vivek Bhat, Amar Patil, Sachin Dhumal, Prashant Bhat, Papagudi Subramanian, Rachana Tripathi, Shesheer Munipally, Sumeet Gujral, Navin Khattry, Sudeep Gupta, and Nikhil Patkar
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S-gene target failure (SGTF) is neither specific nor accurate for identification of Omicron lineage of SARS-CoV-2. We observed N-gene target failure (NGTF) in 402 out of 412 SARS-CoV2 positive cases from December to mid-January 2022 using a commercially available assay. This phenomenon was not observed with more than 15,000 cases tested previously. We sequenced the genome of five samples with NGTF and compared these results with six cases where NGTF was not seen. We confirm that cases with NGTF were the Omicron lineage while cases with preserved N-gene amplification belonged to Delta lineage. We discovered that the ERS31-33 deletion (nucleotide 28362-28370del) overlaps with N gene probe used, explaining NGTF. As the ‘stealth’ Omicron variant also harbors ERS31-33 deletion, this approach will work for the detection of ‘stealth’ Omicron variant as well. We suggest that NGTF can be used as a low cost, rapid screening strategy for detection of Omicron.
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- 2022
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33. Expression pattern of CD179 in b-cell acute lymphoblastic leukemia (B-All): A potential utility for lineage assignment and B-ALL MRD monitoring
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Prashant, Tembhare, primary, Shubham, Pawar, additional, Anu, Singh, additional, Shreya, Shyamsundar, additional, Sitaram, Ghogale, additional, Nilesh, Deshpande, additional, Karishma, Girase, additional, Sweta, Rajpal, additional, Gaurav, Chatterjee, additional, Nikhil, Patkar, additional, Sumeet, Gujral, additional, and Papagudi Gaesan, Subramanian, additional
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- 2022
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34. Genomic Analysis of AZD1222 (ChAdOx1) Vaccine Breakthrough Infections in the City of Mumbai
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Arusha Shetty, Gaurav Chatterjee, Sweta Rajpal, Tuhina Srivastava, Nilesh Gardi, Sumeet Mirgh, Anant Gokarn, Sachin Punatar, Nitin Shetty, Amit Joshi, Sudhir Nair, Vedang Murthy, Navin Khattry, Prashant Tembhare, Rajesh Dikshit, Pankaj Chaturvedi, Ashwini More, Sujeet Kamtalwar, Preeti Chavan, Vivek Bhat, Amar Patil, Sachin Dhumal, Prashant Bhat, Papagudi Subramanian, Sumeet Gujral, Rajendra Badwe, Nikhil Patkar, and Sudeep Gupta
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Article Subject ,SARS-CoV-2 ,ChAdOx1 nCoV-19 ,COVID-19 ,Humans ,General Medicine ,Genomics ,Phylogeny - Abstract
Background. This manuscript describes the genetic features of SARS-CoV-2 mutations, prevalent phylogenetic lineages, and the disease severity amongst COVID-19-vaccinated individuals in a tertiary cancer hospital during the second wave of the pandemic in Mumbai, India. Methods. This observational study included 159 COVID-19 patients during the second wave of the pandemic from 17th March to 1st June 2021 at a tertiary cancer care centre in Mumbai. The cohort comprised of healthcare workers, staff relatives, cancer patients, and patient relatives. For comparison, 700 SARS-CoV-2 genomes sequenced during the first wave (23rd April to 25th September 2020) at the same centre were also analysed. Patients were assigned to nonvaccinated (no vaccination or p = 0.27). There was no occurrence of severe COVID-19 in the dose 2 group (0/38, 0% vs. 14/121, 11.6%; p = 0.02). SARS-CoV-2 genomes from all three severe COVID-19 patients in the vaccinated group belonged to the delta lineage (3/28, 10.7% vs. 0/39, 0.0%, p = 0.04). Conclusions. Sequencing analysis of SARS-COV-2 genomes from Mumbai during the second wave of COVID-19 suggests the prevalence of the kappa B.1.617.1 and the delta B.1.627.2 variants among both vaccinated and unvaccinated individuals. Continued evaluation of genomic sequencing data from breakthrough COVID-19 is necessary for monitoring the properties of evolving variants of concern and formulating appropriate immune response boosting and therapeutic strategies.
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- 2021
35. Critical Role of Flow Cytometric Immunophenotyping in the Diagnosis, Subtyping, and Staging of T-Cell/NK-Cell Non-Hodgkin's Lymphoma in Real-World Practice: A Study of 232 Cases From a Tertiary Cancer Center in India
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Prashant R. Tembhare, Gaurav Chatterjee, Anumeha Chaturvedi, Niharika Dasgupta, Twinkle Khanka, Shefali Verma, Sitaram G. Ghogale, Nilesh Deshpande, Karishma Girase, Manju Sengar, Bhausaheb Bagal, Hasmukh Jain, Dhanalaxmi Shetty, Sweta Rajpal, Nikhil Patkar, Tushar Agrawal, Sridhar Epari, Tanuja Shet, Papagudi G. Subramanian, and Sumeet Gujral
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Cancer Research ,Oncology ,immune system diseases ,hemic and lymphatic diseases - Abstract
BackgroundT-cell/NK-cell non-Hodgkin’s lymphoma (T/NK-NHL) is an uncommon heterogeneous group of diseases. The current classification of T/NK-NHL is mainly based on histopathology and immunohistochemistry. In practice, however, the lack of unique histopathological patterns, overlapping cytomorphology, immunophenotypic complexity, inadequate panels, and diverse clinical presentations pose a great challenge. Flow cytometric immunophenotyping (FCI) is a gold standard for the diagnosis, subtyping, and monitoring of many hematological neoplasms. However, studies emphasizing the role of FCI in the diagnosis and staging of T/NK-NHL in real-world practice are scarce.MethodsWe included T-cell non-Hodgkin’s lymphoma (T-NHL) patients evaluated for the diagnosis and/or staging of T/NK-NHL using FCI between 2014 and 2020. We studied the utility of FCI in the diagnosis and subtyping of T/NK-NHL and correlated the FCI findings with the results of histopathology/immunohistochemistry. For correlation purposes, patients were categorized under definitive diagnosis and subtyping, inadequate subtyping, inadequate diagnosis, and misdiagnosis based on the findings of each technique.ResultsA total of 232 patients were diagnosed with T/NK-NHL. FCI findings provided definitive diagnoses in 198 patients and subtyping in 187/198 (95.45%) patients. The correlation between FCI and histopathological/immunohistochemistry results (n = 150) demonstrated an agreement on the diagnosis and subtyping in 69/150 (46%) patients. Of the remaining cases, the diagnosis and subtyping were inadequate in 64/150 (42.7%), and 14/150 (9.33%) were misdiagnosed on histopathology/immunohistochemistry results. FCI provided definitive diagnosis and subtyping in 51/64 (79.7%) patients. Among these, 13 patients diagnosed with peripheral T-cell lymphoma not-otherwise-specified were reclassified (angioimmunoblastic T-cell lymphoma (AITL)-11 and prolymphocytic leukemia-2) on FCI. It corrected the diagnosis in 14 patients that were misdiagnosed (6 B-cell NHL (B-NHL), 3 Hodgkin’s lymphoma, 1 acute leukemia, and 1 subcutaneous panniculitis-like T-cell lymphoma) and misclassified (3 T-NHL) on histopathological results. AITL was the commonest T-NHL misclassified on histopathological results. FCI also confirmed the definite involvement in 7/83 (8.4%) and 27/83 (32.5%) bone marrow (BM) samples reported as suspicious and uninvolved, respectively, on histopathological evaluation.ConclusionAITL was the most frequently diagnosed T/NK-NHL in this study. FCI provided a distinct advantage in detecting BM involvement by T/NK-NHL, especially in patients with low-level involvement. Overall, our study concluded that FCI plays a critical role in the diagnosis, subtyping, and staging of T/NK-NHL in real-world practice.
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- 2021
36. Comprehensive immune cell profiling depicts an early immune response associated with severe coronavirus disease 2019 in cancer patients
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Preeti Chavan, Vedang Murthy, Bhakti Trivedi, Karishma Girase, Harshini Sriram, Kajal Dalvi, Nilesh Deshpande, Anant Gokarn, Gaurav Chatterjee, Amit Joshi, Akhil Rajendra, Papagudi Ganesan Subramanian, Anumeha Chaturvedi, Sumeet Prakash Mirgh, Sweta Rajpal, Navin Khattry, Twinkle Khanka, Prashant Bhat, Nikhil Patkar, Prashant Tembhare, Vivek Bhat, Ashwini More, Sitaram Ghogale, Sudhir Nair, Sujeet Kamtalwar, Nitin Shetty, and Sudeep Gupta
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Myeloid ,inflammatory cytokines ,medicine.medical_treatment ,Short Communication ,Immunology ,Short Communications ,Disease ,SARS‐CoV‐2 ,Proinflammatory cytokine ,Immune system ,T-Lymphocyte Subsets ,COVID‐19 ,Neoplasms ,medicine ,Immunology and Allergy ,Humans ,severe disease ,business.industry ,Effector ,SARS-CoV-2 ,Respiratory disease ,Immunity ,Cancer ,COVID-19 ,Cancer patients ,Cell Biology ,Immunotherapy ,medicine.disease ,medicine.anatomical_structure ,myeloid dendritic cells ,business ,immune cell profile - Abstract
Recent studies have highlighted multiple immune perturbations related to severe acute respiratory syndrome coronavirus 2 infection–associated respiratory disease [coronavirus disease 2019 (COVID‐19)]. Some of them were associated with immunopathogenesis of severe COVID‐19. However, reports on immunological indicators of severe COVID‐19 in the early phase of infection in patients with comorbidities such as cancer are scarce. We prospectively studied about 200 immune response parameters, including a comprehensive immune‐cell profile, inflammatory cytokines and other parameters, in 95 patients with COVID‐19 (37 cancer patients without active disease and intensive chemo/immunotherapy, 58 patients without cancer) and 21 healthy donors. Of 95 patients, 41 had severe disease, and the remaining 54 were categorized as having a nonsevere disease. We evaluated the association of immune response parameters with severe COVID‐19. By principal component analysis, three immune signatures defining characteristic immune responses in COVID‐19 patients were found. Immune cell perturbations, in particular, decreased levels of circulating dendritic cells (DCs) along with reduced levels of CD4 T‐cell subsets such as regulatory T cells (Tregs), type 1 T helper (Th1) and Th9; additionally, relative expansion of effector natural killer (NK) cells were significantly associated with severe COVID‐19. Compared with patients without cancer, the levels of terminal effector CD4 T cells, Tregs, Th9, effector NK cells, B cells, intermediate‐type monocytes and myeloid DCs were significantly lower in cancer patients with mild and severe COVID‐19. We concluded that severely depleted circulating myeloid DCs and helper T subsets in the initial phase of infection were strongly associated with severe COVID‐19 independent of age, type of comorbidity and other parameters. Thus, our study describes the early immune response associated with severe COVID‐19 in cancer patients without intensive chemo/immunotherapy., We studied an early immune response in COVID‐19 in patients with cancer. We observed three distinct immune signatures defining characteristic immune response in COVID‐19 patients. Our data highlight that reduced levels of circulating helper T cells and dendritic cells in the early phase of infection were significantly associated with progression to severe disease. Severely depleted levels of circulating conventional dendritic cells were independently associated with severe COVID‐19 in patients with cancer.
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- 2021
37. Mutational landscape of Juvenile Myelomonocytic Leukemia (JMML)-A real-world context
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Gaurav Chatterjee, Gaurav Narula, Papagudi Ganesan Subramanian, Nikhil Patkar, Prashant Tembhare, Chetan Dhamne, Dhanalaxmi Shetty, Sumeet Gujral, Shrinidhi Nathany, Shruti Ghai, Nirmalya Roy Moulik, and S. Banavali
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Neuroblastoma RAS viral oncogene homolog ,Oncology ,medicine.medical_specialty ,Myeloid ,Clinical Biochemistry ,Context (language use) ,Internal medicine ,Molecular genetics ,medicine ,Biomarkers, Tumor ,Humans ,Genetic Predisposition to Disease ,Genetic Testing ,Alleles ,Genetic Association Studies ,Chromosome 7 (human) ,Chromosome Aberrations ,Juvenile myelomonocytic leukemia ,business.industry ,Biochemistry (medical) ,Myeloid leukemia ,Hematology ,General Medicine ,Genomics ,medicine.disease ,PTPN11 ,medicine.anatomical_structure ,Leukemia, Myelomonocytic, Juvenile ,Mutation ,business - Abstract
INTRODUCTION Juvenile myelomonocytic leukemia (JMML) is a rare childhood neoplasm (
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- 2021
38. A High‐Sensitivity 10‐Color Flow Cytometric Minimal Residual Disease Assay in B‐Lymphoblastic Leukemia/Lymphoma Can Easily Achieve the Sensitivity of 2‐in‐10 6 and Is Superior to Standard Minimal Residual Disease Assay: A Study of 622 Patients
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Karishma Girase, Yajamanam Badrinath, Rahul Shukla, Dilshad Dhaliwal, Gaurav Narula, Papagudi G Subramanian Pg, Maya Prasad, Prashant Tembhare, Sumeet Gujral, Nilesh Deshpande, Shripad Banavali, Sitaram Ghogale, Pearl Rodrigues, Dhanalaxmi Shetty, Gaurav Chatterjee, Nikhil Patkar, and Avinash Gupta
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0301 basic medicine ,Histology ,business.industry ,B Lymphoblastic Leukemia/Lymphoma ,Cell Biology ,medicine.disease ,Minimal residual disease ,Pathology and Forensic Medicine ,Lymphoma ,Highly sensitive ,body regions ,03 medical and health sciences ,Leukemia ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,hemic and lymphatic diseases ,030220 oncology & carcinogenesis ,medicine ,Color flow ,Bone marrow ,Nuclear medicine ,business ,Cytometry - Abstract
BACKGROUND Flow-cytometric minimal residual disease (FC-MRD) monitoring is a well-established risk-stratification factor in B-lymphoblastic leukemia/lymphoma (-B-ALL) and is being considered as a basis for deintensification or escalation in treatment protocols. However, currently practiced standard FC-MRD has limited sensitivity (up to 0.01%) and higher false MRD-negative rate. Hence, a highly sensitive, widely applicable, and easily reproducible FC-MRD assay is needed, which can provide a reliable basis for therapeutic modifications. METHODS A 10-color high-event analysis FC-MRD assay was studied for the evaluation of MRD status at postinduction, (PI; day-35), postconsolidation, (PC; day-78), and subsequent follow-up time-points (SFU) in bone marrow samples from pediatric B-ALL. RESULTS One-thousand MRD samples (PI-62.2%; PC-26.5%; and SFU-11.3%) from 622 childhood B-ALL patients were studied. High-event analysis was performed with median 4,452,000 events (range, 839,000 to 8,866,000 events) and >4 million events in 71% samples. MRD was measurable in 43.2% of PI-samples, in 29.4% PC-samples, and in 32.7% SFU-samples. To simulate comparison with standard FC-MRD, we reanalyzed MRD results gating only first 500,000 and first 1000,000 events in 122 PI-MRD positive samples with MRD levels
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- 2019
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39. Mimics and artefacts of measurable residual disease in a highly sensitive multicolour flow cytometry assay for B-lymphoblastic leukaemia/lymphoma: critical consideration for analysis of measurable residual disease
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Niharika Dasgupta, Chetan Dhamne, Nikhil Patkar, Shripad Banavali, Nilesh Deshpande, Dhanalaxmi Shetty, Papagudi Ganesan Subramanian, Gaurav Narula, Harshini Sriram, Nirmalya Roy Moulik, Sitaram Ghogale, Karishma Girase, Sweta Rajpal, Prashant Tembhare, Gaurav Chatterjee, Gauri Arolkar, Twinkle Khanka, Shefali Verma, and Sumeet Gujral
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Stromal cell ,Neoplasm, Residual ,Clinical Decision-Making ,CD34 ,Sensitivity and Specificity ,CD19 ,Flow cytometry ,Immunophenotyping ,hemic and lymphatic diseases ,Precursor B-Cell Lymphoblastic Leukemia-Lymphoma ,Antineoplastic Combined Chemotherapy Protocols ,medicine ,Biomarkers, Tumor ,Humans ,biology ,medicine.diagnostic_test ,Chemistry ,Mesenchymal stem cell ,Disease Management ,Reproducibility of Results ,Hematology ,Induction Chemotherapy ,Flow Cytometry ,Prognosis ,Treatment Outcome ,Cancer research ,biology.protein ,Interleukin-3 receptor ,Stem cell ,Artifacts - Abstract
High-sensitivity multicolour flow cytometry (MFC)-based B-lymphoblastic leukaemia (B-ALL) measurable residual disease (BMRD) assay is increasingly being used in clinical practice. Herein, we describe six consistently present low-level populations immunophenotypically mimicking abnormal B-ALL blasts in 441 BMRD samples from 301 children. These included CD19+ CD123+ plasmacytoid dendritic cells differentiating from lymphoid precursors, CD10+ transitional B cells with CD10+ /CD38dim-to-negative/CD20bright/CD45bright phenotype, CD19+ natural killer (NK) cells, CD73bright/CD10+ mesenchymal stromal/stem cells, CD73bright/CD34+ endothelial cells, and a CD34+ CD38dim-to-negative/CD10- /CD20bright/CD45bright subset of mature B cells. We provide the proportions, comprehensive immunophenotype, and practical clues for proper identification of these low-level populations. Knowledge regarding the presence and immunophenotype of these mimics is essential for accurate interpretation in high-sensitivity MFC-BMRD analysis.
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- 2021
40. Outcomes and prognostic factors in adolescents and young adults with ALL treated with a modified BFM-90 protocol
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Papagudi Ganesan Subramanian, Hasmukh Jain, Akhil Rajendra, Lingaraj Nayak, Nikhil Patkar, Sachin Punatar, Manju Sengar, Bhausaheb Bagal, Prashant Tembhare, Anant Gokarn, Smruti Mokal, Navin Khattry, Jayashree Thorat, Dhanlaxmi Shetty, V. N. Avinash Bonda, Gaurav Chatterjee, and Hemani Jain
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Protocol (science) ,Adult ,medicine.medical_specialty ,Adolescent ,business.industry ,Clinical Trials and Observations ,Medical record ,MEDLINE ,Cytarabine ,Hematology ,Precursor Cell Lymphoblastic Leukemia-Lymphoma ,medicine.disease ,Prognosis ,Minimal residual disease ,Regimen ,Young Adult ,Internal medicine ,Acute lymphocytic leukemia ,medicine ,Overall survival ,Humans ,Young adult ,business ,Child ,Stem Cell Transplantation - Abstract
The use of pediatrics-inspired protocols in adolescent and young adult (AYA) acute lymphoblastic leukemia (ALL) results in superior survival compared with the adult protocols. Pediatrics-inspired protocols carry an increased risk of toxicity and treatment-related mortality in low resource settings, which can offset the potential benefits. We studied the outcomes and prognostic factors in the treatment of AYA ALL with a pediatrics-inspired regimen. We retrieved data regarding demographics, investigations, treatment details, and toxicities from the electronic medical records of patients diagnosed with ALL in the 15- to 25-year-old age group who were initiated on a modified Berlin-Frankfurt-Münster 90 (BFM-90) protocol between January 2013 and December 2016 at the Tata Memorial Centre. A total of 349 patients in the 15- to 25-year-old age group were treated with a modified BFM-90 protocol. The use of this pediatrics-inspired protocol resulted in a 3-year event-free survival (EFS) and overall survival (OS) of 59.4% and 61.8%, respectively. Only 15 patients underwent an allogeneic stem cell transplant. Minimal residual disease (MRD) persistence postinduction emerged as the only factor predictive of poor outcomes. A modified BFM-90 protocol is an effective and safe regimen for AYA ALL with an OS and EFS comparable to the published literature.
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- 2021
41. Immunophenotypic shift in the <scp>B</scp> ‐cell precursors from regenerating bone marrow samples: A critical consideration for measurable residual disease assessment in <scp>B</scp> ‐lymphoblastic leukemia
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Nirmlya Roy Malik, Harshini Sriram, Karishma Girase, Gaurav Narula, Shiv Narayan Pradhan, Nikhil Patkar, Sitaram Ghogale, Chetan Dhamane, Devasis Panda, Prashant Tembhare, Gaurav Chatterjee, Papagudi Ganesan Subramanian, Sumeet Gujral, Twinkle Khanka, Shripad Banavali, and Nilesh Deshpande
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Male ,0301 basic medicine ,Neoplasm, Residual ,Histology ,Adolescent ,Antigens, CD19 ,CD34 ,Antigens, CD34 ,Immunofluorescence ,Immunophenotyping ,Pathology and Forensic Medicine ,Flow cytometry ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,Bone Marrow ,Precursor B-Cell Lymphoblastic Leukemia-Lymphoma ,hemic and lymphatic diseases ,Leukemia, B-Cell ,medicine ,Humans ,Child ,B cell ,CD20 ,medicine.diagnostic_test ,biology ,Chemistry ,Precursor Cells, B-Lymphoid ,Infant ,Cell Biology ,Antigens, CD20 ,Flow Cytometry ,medicine.disease ,Molecular biology ,Leukemia ,030104 developmental biology ,medicine.anatomical_structure ,Child, Preschool ,030220 oncology & carcinogenesis ,biology.protein ,Female ,Bone marrow - Abstract
Accurate knowledge of expression patterns/levels of commonly used MRD markers in regenerative normal-B-cell-precursors (BCP) is highly desirable to distinguish leukemic-blasts from regenerative-BCP for multicolor flow cytometry (MFC)-based measurable residual disease (MRD) assessment in B-lymphoblastic leukemia (B-ALL). However, the data highlighting therapy-related immunophenotypic-shift in regenerative-BCPs is scarce and limited to small cohort. Herein, we report the in-depth evaluation of immunophenotypic shift in regenerative-BCPs from a large cohort of BALL-MRD samples. Ten-color MFC-MRD analysis was performed in pediatric-BALL at the end-of-induction (EOI), end-of-consolidation (EOC), and subsequent-follow-up (SFU) time-points. We studied normalized-mean fluorescent intensity (nMFI) and coefficient-of-variation of immunofluorescence (CVIF) of CD10, CD19, CD20, CD34, CD38, and CD45 expression in regenerative-BCP (early, BCP1 and late, BCP2) from 200 BALL-MRD samples, and compared them with BCP from 15 regenerating control (RC) TALL-MRD samples and 20 treatment-naive bone-marrow control (TNSC) samples. Regenerative-BCP1 showed downregulation in CD10 and CD34 expression with increased CVIF and reduced nMFI (p < 0.001), upregulation of CD20 with increased nMFI (p = 0.014) and heterogeneous CD45 expression with increased CVIF (p < 0.001). Immunophenotypic shift was less pronounced in the BCP2 compared to BCP1 compartment with increased CVIF in all but CD45 (p < 0.05) and reduced nMFI only in CD45 expression (p = 0.005). Downregulation of CD10/CD34 and upregulation of CD20 was higher at EOI than EOC and SFU time-points (p < 0.001). Regenerative-BCPs are characterized by the significant immunophenotypic shift in commonly used B-ALL-MRD markers, especially CD10 and CD34 expression, as compared to treatment-naive BCPs. Therefore, the templates/database for BMRD analysis must be developed using regenerative-BCP.
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- 2020
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42. Clinical Impact of Panel Based Error Corrected Next Generation Sequencing versus Flow Cytometry to Detect Measurable Residual Disease (MRD) in Acute Myeloid Leukemia (AML)
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Dhanalaxmi Shetty, Nikhil Patkar, Prashant Tembhare, Sumeet Gujral, Rohan Kodgule, Manju Sengar, Papagudi Ganesan Subramanian, Rakhi Salve, Nilesh Deshpande, Sitaram Ghoghale, Navin Khattry, Shruti Chaudhary, Sweta Rajpal, Hasmukh Jain, Anam Fatima Shaikh, Chinmayee Kakirde, Hari Menon, Bhausaheb Bagal, Syed Hasan Khizer, Prasanna Bhanshe, Gaurav Chatterjee, and Swapnali Joshi
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Oncology ,medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,Myeloid leukemia ,Disease ,Relapse free survival ,DNA sequencing ,Flow cytometry ,body regions ,Internal medicine ,hemic and lymphatic diseases ,medicine ,Overall survival ,Cumulative incidence ,Multiparameter flow cytometry ,business - Abstract
We accrued 201 patients of adult AML treated with conventional therapy, in morphological remission and evaluated MRD using sensitive error corrected next generation sequencing (NGS-MRD) and multiparameter flow cytometry (FCM-MRD) at the end of induction (PI) and consolidation (PC). Nearly 71% of patients harbored PI NGS-MRD and 40.9% harbored PC NGS-MRD (median VAF 0.76%). Patients harboring NGS-MRD had a significantly higher cumulative incidence of relapse (p=0.003), inferior overall survival (p=0.001) and relapse free survival (p
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- 2020
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43. Eleven‐marker 10‐color flow cytometric assessment of measurable residual disease for T‐cell acute lymphoblastic leukemia using an approach of exclusion
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Shefali Verma, Devasis Panda, Prashant Tembhare, Papagudi Ganesan Subramanian, Twinkle Khanka, Sitaram Ghogale, Sumeet Gujral, Nilesh Deshpande, Nikhil Patkar, Shripad Banavali, Gaurav Narula, Harshini Sriram, Yajamanam Badrinath, Karishma Girase, Mahima Sanyal, and Gaurav Chatterjee
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CD4-Positive T-Lymphocytes ,Male ,0301 basic medicine ,medicine.medical_specialty ,Neoplasm, Residual ,Histology ,Adolescent ,Lymphoblastic Leukemia ,T cell ,CD8-Positive T-Lymphocytes ,Precursor T-Cell Lymphoblastic Leukemia-Lymphoma ,Gastroenterology ,Pathology and Forensic Medicine ,03 medical and health sciences ,0302 clinical medicine ,hemic and lymphatic diseases ,Internal medicine ,Biomarkers, Tumor ,Humans ,Medicine ,Child ,Gene Expression Regulation, Leukemic ,business.industry ,Infant ,Cell Biology ,Flow Cytometry ,medicine.disease ,Minimal residual disease ,Lymphoma ,body regions ,030104 developmental biology ,medicine.anatomical_structure ,Child, Preschool ,030220 oncology & carcinogenesis ,Female ,Bone marrow ,Color flow ,CD5 ,business ,CD8 - Abstract
Measurable/minimal residual disease (MRD) status has been suggested as a powerful indicator of clinical-outcome in T-cell lymphoblastic leukemia/lymphoma (T-ALL). Multicolor flow cytometric (MFC)-based T-ALL MRD reports are limited and traditionally based on the utilization of markers-of-immaturity like TdT and CD99. Moreover, studies demonstrating the multicolor flow cytometric (MFC) approach for the assessment of T-ALL MRD are sparse. Herein, we describe an 11-marker, 10-color MFC-based T-ALL MRD method using an "approach of exclusion." Methods The study included 269 childhood T-ALL patients treated with a modified-MCP841 protocol. An 11-marker, 10-color MFC-based MRD was performed in bone marrow (BM) samples at the end-of-induction (EOI) and end-of-consolidation (EOC) time-points using Kaluza-version-1.3 software. Results We studied EOI-MRD in 269 and EOC-MRD in 105 childhood T-ALL patients. EOI-MRD was detectable in 125 (46.5%) samples (median, 0.3%; range, 0.0007-66.3%), and EOC-MRD was detectable in 34/105 (32.4%) samples (median, 0.055%; range, 0.0008-27.6%). Leukemia-associated immunophenotypes (LAIPs) found useful for MRD assessment were dual-negative CD4/CD8 (40.9%), dual-positive CD4/CD8 (23.3%) and only CD4 or CD8 expression (35.8%); dim/subset/dim-negative surface-CD3 (39%), dim/subset/dim-negative/negative CD5 (28.3%), dim/dim-negative/negative/heterogeneous CD45 (44.7%) and co-expression of CD5/CD56 (7.5%). EOI-MRD-positive status was found to be the most-relevant independent factor in the prediction of inferior relapse-free and overall survival. Conclusion We described an 11-marker 10-color MFC-based highly sensitive MRD assay in T-ALL using an approach of exclusion. The addition of CD4 and CD8 to the pan-T-cell markers in a 10-color assay is highly useful in T-ALL MRD assessment and extends its applicability to almost all T-ALL patients.
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- 2020
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44. Machine learning derived genomics driven prognostication for acute myeloid leukemia with
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Anam Fatima, Shaikh, Chinmayee, Kakirde, Chetan, Dhamne, Prasanna, Bhanshe, Swapnali, Joshi, Shruti, Chaudhary, Gaurav, Chatterjee, Prashant, Tembhare, Maya, Prasad, Nirmalya, Roy Moulik, Anant, Gokarn, Avinash, Bonda, Lingaraj, Nayak, Sachin, Punatkar, Hasmukh, Jain, Bhausaheb, Bagal, Dhanalaxmi, Shetty, Manju, Sengar, Gaurav, Narula, Navin, Khattry, Shripad, Banavali, Sumeet, Gujral, Subramanian, P G, and Nikhil, Patkar
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Machine Learning ,Leukemia, Myeloid, Acute ,gene mutations in AML with RUNX1-RUNX1T1 ,RUNX1 Translocation Partner 1 Protein ,machine learning ,gene mutations in AML with t(8 ,21) ,Core Binding Factor Alpha 2 Subunit ,Mutation ,genomic risk stratification ,Humans ,Genomics ,Acute myeloid leukemia (AML) with RUNX1-RUNX1T1 ,Article - Abstract
Panel based next generation sequencing was performed on a discovery cohort of AML with RUNX1-RUNX1T1. Supervised machine learning identified NRAS mutation and absence of mutations in ASXL2, RAD21, KIT and FLT3 genes as well as a low mutation to be associated with favorable outcome. Based on this data patients were classified into favorable and poor genetic risk classes. Patients classified as poor genetic risk had a significantly lower overall survival (OS) and relapse free survival (RFS). We could validate these findings independently on a validation cohort (n=61). Patients in the poor genetic risk group were more likely to harbor measurable residual disease. Poor genetic risk emerged as an independent risk factor predictive of inferior outcome. Using an unbiased computational approach based we provide evidence for gene panel-based testing in AML with RUNX1-RUNX1T1 and a framework for integration of genomic markers toward clinical decision making in this heterogeneous disease entity.
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- 2020
45. Sudden blast phase in pediatric chronic myeloid leukemia-chronic phase with abnormal lymphoid blasts detected by flow cytometry at diagnosis: Can it be considered a warning sign?
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Gaurav Narula, Nikhil Patkar, Prashant Tembhare, Dhanlaxmi Shetty, Subramaniam Ramanathan, Gaurav Chatterjee, Papagudi Ganesan Subramanian, Kalasekhar Vijayasekharan, Sumeet Gujral, and Shripad Banavali
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0301 basic medicine ,Male ,medicine.medical_specialty ,Histology ,Blast Crisis ,Myeloid ,Adolescent ,Cell Count ,Blast Phase ,Pathology and Forensic Medicine ,Flow cytometry ,03 medical and health sciences ,0302 clinical medicine ,hemic and lymphatic diseases ,Internal medicine ,Leukemia, Myelogenous, Chronic, BCR-ABL Positive ,Leukocytes ,Medicine ,Humans ,Lymphocytes ,Child ,Retrospective Studies ,B-Lymphocytes ,medicine.diagnostic_test ,business.industry ,Medical record ,Myeloid leukemia ,Retrospective cohort study ,Cell Biology ,Flow Cytometry ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Child, Preschool ,Cohort ,Female ,business - Abstract
Background: Inconclusive knowledge persists regarding the course of chronic myeloid leukemia-chronic phase (CML-CP) patients with detectable abnormal blasts by flowcytometry at diagnosis. The 2016 WHO classification is not specific regarding subclassification of CML with
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- 2020
46. Genomic landscape of Juvenile Myelomonocytic Leukemia (JMML) - A real world context
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SHRINIDHI NATHANY, Gaurav Chatterjee, Shruti Ghai, Nirmalya Roy Moulik, Dhanlaxmi Shetty, Papagudi Subramanian, Prashant Tembhare, Sumeet Gujral, Chetan Dhamne, Sripad Banavali, Gaurav Narula, and Nikhil Patkar
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- 2020
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47. Flow cytometric evaluation of CD38 expression levels in the newly diagnosed T-cell acute lymphoblastic leukemia and the effect of chemotherapy on its expression in measurable residual disease, refractory disease and relapsed disease: an implication for anti-CD38 immunotherapy
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Gaurav Chatterjee, Hasmukh Jain, Nilesh Deshpande, Nikhil Patkar, Gaurav Narula, Manju Sengar, Navin Khattry, Sitaram Ghogale, Bhausaheb Bagal, Shripad Banavali, Y. Badrinath, Harshini Sriram, Papagudi Ganesan Subramanian, Twinkle Khanka, Sumeet Gujral, Devasis Panda, and Prashant Tembhare
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Male ,Cancer Research ,Neoplasm, Residual ,medicine.medical_treatment ,Disease ,CD38 ,Precursor T-Cell Lymphoblastic Leukemia-Lymphoma ,Gastroenterology ,receptors, antigen ,hemic and lymphatic diseases ,Antineoplastic Combined Chemotherapy Protocols ,Immunology and Allergy ,hematologic neoplasms ,Child ,RC254-282 ,Membrane Glycoproteins ,medicine.diagnostic_test ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Middle Aged ,Flow Cytometry ,Prognosis ,Survival Rate ,medicine.anatomical_structure ,Oncology ,Child, Preschool ,translational medical research ,Molecular Medicine ,Female ,immunotherapy ,Adult ,medicine.medical_specialty ,Adolescent ,medicine.drug_class ,T cell ,Immunology ,Monoclonal antibody ,Flow cytometry ,Young Adult ,Internal medicine ,medicine ,Biomarkers, Tumor ,Humans ,Pharmacology ,Chemotherapy ,business.industry ,Infant ,Basic Tumor Immunology ,Immunotherapy ,ADP-ribosyl Cyclase 1 ,Drug Resistance, Neoplasm ,antigens, neoplasm ,Hematological neoplasm ,Neoplasm Recurrence, Local ,business ,Follow-Up Studies - Abstract
BackgroundRecently, anti-CD38 monoclonal antibody (Mab) therapy has become a focus of attention as an additional/alternative option for many hematological neoplasms including T-cell acute lymphoblastic leukemia (T-ALL). It has been shown that antitumor efficacy of anti-CD38-Mab depends on the level of CD38 expression on tumor cells. Reports on CD38 expression in T-ALL are scarce, and data on the effect of cytotoxic chemotherapy on CD38 expression are limited to very few samples. Moreover, it lacks entirely in refractory disease and in adult T-ALL. We report the flow cytometric evaluation of CD38 expression in T-ALL blasts at diagnosis and the effect of cytotoxic chemotherapy on its expression in measurable residual disease (MRD), refractory disease (MRD≥5%), and relapsed disease in a large cohort of T-ALL.MethodsThe study included 347 samples (188 diagnostic, 100 MRD, 24 refractory and 35 relapse samples) from 196 (children: 85; adolescents/adults: 111) patients with T-ALL. CD38-positive blasts percentages (CD38-PBPs) and expression-intensity (mean fluorescent intensity, CD38-MFI) were studied using multicolor flow cytometry (MFC). MFC-based MRD was performed at the end-of-induction (EOI-MRD, day 30–35) and end-of-consolidation (EOC-MRD, day 78–85) subsequent follow-up (SFU-MRD) points.ResultsPatients were classified into early thymic precursor subtype of T-ALL (ETPALL, 54/188, 28.7%), and non-ETPALL (134/188, 71.3%). Of 188, EOI-MRD assessment was available in 152, EOC-MRD was available in 96 and SFU-MRD was available in 14 patients. CD38 was found positive in 97.9% (184/188) of diagnostic, 88.7% (110/124) MRD (including 24-refractory) and 82.9% (29/35) relapsed samples. Median (95% CI) of CD38-PBPs/MFI in diagnostic, MRD, refractory, and relapsed T-ALL samples were, respectively, 85.9% (82.10%–89.91%)/4.2 (3.88–4.47), 74.0% (58.87%–83.88%)/4.6 (3.67–6.81), 79.6% (65.25%–96.11%)/4.6 (3.33–8.47) and 85.2% (74.48%–93.01%)/5.6 (4.14–8.99). No significant difference was noted in CD38 expression between pediatric versus adult and patients with ETPALL versus non-ETPALL. No change was observed in CD38-MFI between diagnostic versus MRD and diagnostic versus relapsed paired samples. However, we noticed a mild drop in the CD38-PBPs in MRD samples compared with the diagnostic samples (p=0.016).ConclusionWe report an in-depth analysis of CD38 expression in a large cohort of T-ALL at diagnosis, during chemotherapy, and at relapse. Our data demonstrated that CD38 is robustly expressed in T-ALL blasts with a little effect of cytotoxic chemotherapy making it a potentially effective target for antiCD38-Mab therapy.
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- 2020
48. NARASIMHA: Novel Assay based on Targeted RNA Sequencing to Identify ChiMeric Gene Fusions in Hematological Malignancies
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Bhausaheb Bagal, Shripad Banavali, Nirmalya Roy Moulik, Gaurav Narula, Sachin Punatkar, Chetan Dhamne, Dhanalaxmi Shetty, Sweta Rajpal, Navin Khattry, Prasanna Bhanshe, Maya Prasad, Lingaraj Nayak, Avinash Bonda, Anant Gokarn, Gaurav Chatterjee, Swapnali Joshi, Papagudi Ganesan Subramanian, Nikhil Patkar, Prashant Tembhare, Manju Sengar, Shruti Chaudhary, and Sumeet Gujral
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DNA, Complementary ,Genetic testing ,Sequence Analysis, RNA ,Sequence analysis ,RNA ,Hematology ,Chimeric gene ,Computational biology ,Biology ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,lcsh:RC254-282 ,Fusion gene ,chemistry.chemical_compound ,Oncology ,chemistry ,Hematologic Neoplasms ,Correspondence ,Cancer genomics ,Humans ,Genomic library ,Gene Fusion ,DNA ,Gene Library - Published
- 2020
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49. Post-induction Measurable Residual Disease Using Multicolor Flow Cytometry Is Strongly Predictive of Inferior Clinical Outcome in the Real-Life Management of Childhood T-Cell Acute Lymphoblastic Leukemia: A Study of 256 Patients
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Mahima Sanyal, Gaurav Chatterjee, Nikhil Patkar, Prashant Tembhare, Yajamanam Badrinath, Nilesh Deshpande, Gaurav Narula, Sumeet Gujral, Shefali Verma, Pratyusha Gudapati, Papagudi Ganesan Subramanian, Sitaram Ghogale, Shripad Banavali, Maya Prasad, Twinkle Khanka, Gunit Mangang, and Florence Kunjachan
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hyperleukocytosis ,0301 basic medicine ,measurable residual disease ,Cancer Research ,medicine.medical_specialty ,Multivariate analysis ,Context (language use) ,Disease ,lcsh:RC254-282 ,Gastroenterology ,Flow cytometry ,03 medical and health sciences ,0302 clinical medicine ,hemic and lymphatic diseases ,Internal medicine ,early clearance ,medicine ,multicolor flow cytometry ,Original Research ,medicine.diagnostic_test ,business.industry ,Hazard ratio ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,medicine.disease ,Minimal residual disease ,Lymphoma ,body regions ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,Cytarabine ,business ,T-cell acute lymphoblastic leukemia ,medicine.drug - Abstract
Background: Measurable/minimal residual disease (MRD) status is suggested as a powerful indicator of clinical-outcome in T-cell lymphoblastic leukemia/lymphoma (T-ALL). Contrary to B-cell ALL, reports on T-ALL MRD are limited and mostly based on molecular methods, mainly from developed countries. Multicolor flow cytometry (MFC)-based T-ALL studies are very few. Clinically relevant cut-off levels and ideal time-point for MRD assessment are still inconclusive. In view of lack of T-ALL MRD data from the developing world, we evaluated the prognostic value of MFC-based post-induction (PI)-MRD assessment in T-ALL in the context of standard practice.Methods: We included 256 childhood-T-ALL patients (age < 15 years) treated with a modified-MCP841 protocol, which uses high-dose cytarabine during consolidation, as a part of standard hospital practice. MRD was studied using 10-color 11-antibody MFC with any level of detectable disease being considered positive. Post-induction (PI)-MRD was available in all patients, and post-consolidation (PC) MRD was available mostly in PI-MRD-positive patients (n = 88).Results: Three years cumulative-incidence-of-relapse (3years-CIR) in PI-MRD-positive patients was inferior to negative patients (46.3% vs. 18.4%). The median relapse-free-survival (RFS), event-free-survival (EFS) and overall-survival (OS) with hazard ratio (HR) of PI-MRD-positive patients were 21.4 months vs not reached (p < 0.0001, HR-4.7), 21.6 months vs. not-reached (p = 0.0003, HR-2.01) and 37.3 months vs. not reached (p = 0.026, HR-1.64) respectively. RFS, EFS and OS of patients with PI-MRD
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- 2020
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50. Fuel properties and composition study of Cassia siamea seed crude pyrolytic oil and char
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Krushna Prasad Shadangi, Kaustubha Mohanty, and Gaurav Chatterjee
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chemistry.chemical_classification ,Inert ,Aqueous solution ,biology ,020209 energy ,General Chemical Engineering ,Organic Chemistry ,Energy Engineering and Power Technology ,02 engineering and technology ,biology.organism_classification ,chemistry.chemical_compound ,Fuel Technology ,Dicarboxylic acid ,chemistry ,Cassia ,0202 electrical engineering, electronic engineering, information engineering ,Phenol ,Heat of combustion ,Pyrolytic carbon ,Char ,Nuclear chemistry - Abstract
Thermal pyrolysis of the Cassia siamea seed was carried out in a fixed bed reactor in the temperature range of 450 °C and 575 °C at a heating rate of 50 °C min−1. The reactor was maintained inert using nitrogen gas at a flow rate of 40 mL min−1. It was observed that the highest yield of pyrolytic liquid was 50.21% obtained at 550 °C which includes 39.86 wt% of organic liquid (oil) and 10.35 wt% of aqueous liquid. The fuel properties of pyrolytic oil confirmed that the oil was slightly basic with a pH of 8.75, having viscosity and calorific value of about 373 cSt and 30.18 MJ kg−1 respectively. The GC-MS based composition analysis quantified the occurrence of many valuable bio-chemicals such as heptadecanenitrile, 1,2-benzene dicarboxylic acid, butyl octyl ester, phenol, p-cresol as major compounds.
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- 2018
- Full Text
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