168 results on '"Gaudêncio, Susana P."'
Search Results
2. Marine cosmetics and the blue bioeconomy: From sourcing to success stories
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Rotter, Ana, Varamogianni-Mamatsi, Despoina, Zvonar Pobirk, Alenka, Gosenca Matjaž, Mirjam, Cueto, Mercedes, Díaz-Marrero, Ana R., Jónsdóttir, Rósa, Sveinsdóttir, Kolbrún, Catalá, Teresa S., Romano, Giovanna, Aslanbay Guler, Bahar, Atak, Eylem, Berden Zrimec, Maja, Bosch, Daniel, Deniz, Irem, Gaudêncio, Susana P., Grigalionyte-Bembič, Ernesta, Klun, Katja, Zidar, Luen, Coll Rius, Anna, Baebler, Špela, Lukić Bilela, Lada, Rinkevich, Baruch, and Mandalakis, Manolis
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- 2024
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3. Improving awareness, understanding, and enforcement of responsibilities and regulations in Blue Biotechnology
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Schneider, Xenia T., Stroil, Belma K., Tourapi, Christiana, Rebours, Céline, Novoveska, Lucie, Vasquez, Marlen I., and Gaudêncio, Susana P.
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- 2023
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4. Impact of per- and polyfluorinated alkyl substances (PFAS) on the marine environment: Raising awareness, challenges, legislation, and mitigation approaches under the One Health concept
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Lukić Bilela, Lada, Matijošytė, Inga, Krutkevičius, Jokūbas, Alexandrino, Diogo A.M., Safarik, Ivo, Burlakovs, Juris, Gaudêncio, Susana P., and Carvalho, Maria F.
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- 2023
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5. Genomic insights into specialized metabolism in the marine actinomycete Salinispora
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Letzel, Anne‐Catrin, Li, Jing, Amos, Gregory CA, Millán‐Aguiñaga, Natalie, Ginigini, Joape, Abdelmohsen, Usama R, Gaudêncio, Susana P, Ziemert, Nadine, Moore, Bradley S, and Jensen, Paul R
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Microbiology ,Biological Sciences ,Evolutionary Biology ,Genetics ,Human Genome ,Rare Diseases ,Biotechnology ,Aquatic Organisms ,Base Sequence ,Biosynthetic Pathways ,Gene Expression Profiling ,Genome ,Bacterial ,Genomic Islands ,Genomics ,Micromonosporaceae ,Multigene Family ,RNA ,Ribosomal ,16S ,Secondary Metabolism ,Sequence Analysis ,DNA ,Water Microbiology ,Ecology - Abstract
Comparative genomics is providing new opportunities to address the diversity and distributions of genes encoding the biosynthesis of specialized metabolites. An analysis of 119 genome sequences representing three closely related species of the marine actinomycete genus Salinispora reveals extraordinary biosynthetic diversity in the form of 176 distinct biosynthetic gene clusters (BGCs) of which only 24 have been linked to their products. Remarkably, more than half of the BGCs were observed in only one or two strains, suggesting they were acquired relatively recently in the evolutionary history of the genus. These acquired gene clusters are concentrated in specific genomic islands, which represent hot spots for BGC acquisition. While most BGCs are stable in terms of their chromosomal position, others migrated to different locations or were exchanged with unrelated gene clusters suggesting a plug and play type model of evolution that provides a mechanism to test the relative fitness effects of specialized metabolites. Transcriptome analyses were used to address the relationships between BGC abundance, chromosomal position and product discovery. The results indicate that recently acquired BGCs can be functional and that complex evolutionary processes shape the micro-diversity of specialized metabolism observed in closely related environmental bacteria.
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- 2017
6. Aquatic Biomaterial Repositories: Comprehensive Guidelines, Recommendations, and Best Practices for Their Development, Establishment, and Sustainable Operation.
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Tourapi, Christiana, Christoforou, Eleni, Gaudêncio, Susana P., and Vasquez, Marlen I.
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The alarming pace of species extinction severely threatens terrestrial and aquatic ecosystems, undermining the crucial ecological services vital for environmental sustainability and human well-being. Anthropogenic activities, such as urbanization, agriculture, industrialization, and those inducing climate change, intensify these risks, further imperiling biodiversity. Of particular importance are aquatic organisms, pivotal in biodiscovery and biotechnology. They contribute significantly to natural product chemistry, drug development, and various biotechnological applications. To safeguard these invaluable resources, establishing and maintaining aquatic biomaterial repositories (ABRs) is imperative. This review explores the complex landscape of ABRs, emphasizing the need for standardized procedures from collection to distribution. It identifies key legislative and regulatory frameworks, such as the Nagoya Protocol and EU directives, essential for ensuring responsible and equitable biorepository operations. Drawing on extensive literature and database searches, this study compiles existing recommendations and practices into a cohesive framework with which to guide the establishment and sustainable management of ABRs. Through collaborative efforts and adherence to best practices, ABRs can play a transformative role in the future of marine biotechnology and environmental conservation. [ABSTRACT FROM AUTHOR]
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- 2024
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7. A guide to the use of bioassays in exploration of natural resources
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Sabotič, Jerica, primary, Bayram, Engin, additional, Ezra, David, additional, Gaudêncio, Susana P., additional, Haznedaroğlu, Berat Z., additional, Janež, Nika, additional, Ktari, Leila, additional, Luganini, Anna, additional, Mandalakis, Manolis, additional, Safarik, Ivo, additional, Simes, Dina, additional, Strode, Evita, additional, Toruńska-Sitarz, Anna, additional, Varamogianni-Mamatsi, Despoina, additional, Varese, Giovanna Cristina, additional, and Vasquez, Marlen I., additional
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- 2024
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8. Comparative Chemical Profiling and Antimicrobial/Anticancer Evaluation of Extracts from Farmed versus Wild Agelas oroides and Sarcotragus foetidus Sponges
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Varamogianni-Mamatsi, Despoina, primary, Nunes, Maria João, additional, Marques, Vanda, additional, Anastasiou, Thekla I., additional, Kagiampaki, Eirini, additional, Vernadou, Emmanouela, additional, Dailianis, Thanos, additional, Kalogerakis, Nicolas, additional, Branco, Luís C., additional, Rodrigues, Cecília M. P., additional, Sobral, Rita G., additional, Gaudêncio, Susana P., additional, and Mandalakis, Manolis, additional
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- 2023
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9. Editorial: Actinomycete natural products: isolation, structure elucidation, biological activity, biosynthesis, and yield improvement.
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Gaudêncio, Susana P. and Pathom-aree, Wasu
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NATURAL products , *OXYGENASES , *BIOSYNTHESIS , *SYNTHETIC biology , *BIOCIDES , *ACYL carrier protein , *ANTIBIOTIC synthesis - Abstract
The article focuses on the significant role of Actinobacteria, particularly Streptomyces species, in producing a wide range of antibiotics, anticancer agents, and agrochemicals. Topics include the ongoing exploration of natural products from actinomycetes through microbial genomics and synthetic biology, the insights gained into biosynthesis and industrial yield improvement, and the potential for these microorganisms to inspire the development of next-generation medicines.
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- 2024
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10. Marine Drug Discovery through Computer-Aided Approaches
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Gaudêncio, Susana P., primary and Pereira, Florbela, additional
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- 2023
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11. Exopolysaccharide Production from Marine-Derived Brevundimonas huaxiensis Obtained from Estremadura Spur Pockmarks Sediments Revealing Potential for Circular Economy
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Catalão, Marta, primary, Fernandes, Mafalda, additional, Galdon, Lorena, additional, Rodrigues, Clara F., additional, Sobral, Rita G., additional, Gaudêncio, Susana P., additional, and Torres, Cristiana A. V., additional
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- 2023
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12. Hydrophobic DES Based on Menthol and Natural Organic Acids for Use in Antifouling Marine Coatings
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Valente, Sara, primary, Oliveira, Filipe, additional, Ferreira, Inês João, additional, Paiva, Alexandre, additional, Sobral, Rita G., additional, Diniz, Mário S., additional, Gaudêncio, Susana P., additional, and Duarte, Ana Rita Cruz, additional
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- 2023
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13. Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation
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Gaudêncio, Susana P., primary, Bayram, Engin, additional, Lukić Bilela, Lada, additional, Cueto, Mercedes, additional, Díaz-Marrero, Ana R., additional, Haznedaroglu, Berat Z., additional, Jimenez, Carlos, additional, Mandalakis, Manolis, additional, Pereira, Florbela, additional, Reyes, Fernando, additional, and Tasdemir, Deniz, additional
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- 2023
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14. Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation
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Gaudêncio, Susana P., Bayram, Engin, Lukić Bilela, Lada, Cueto, Mercedes, Díaz-Marrero, Ana R., Haznedaroglu, Berat Z., Jimenez, Carlos, Mandalakis, Manolis, Pereira, Florbela, Reyes, Fernando, Tasdemir, Deniz, Gaudêncio, Susana P., Bayram, Engin, Lukić Bilela, Lada, Cueto, Mercedes, Díaz-Marrero, Ana R., Haznedaroglu, Berat Z., Jimenez, Carlos, Mandalakis, Manolis, Pereira, Florbela, Reyes, Fernando, and Tasdemir, Deniz
- Abstract
Natural Products (NP) are essential for the discovery of novel drugs and products for numerous biotechnological applications. The NP discovery process is expensive and time-consuming, having as major hurdles dereplication (early identification of known compounds) and structure elucidation, particularly the determination of the absolute configuration of metabolites with stereogenic centers. This review comprehensively focuses on recent technological and instrumental advances, highlighting the development of methods that alleviate these obstacles, paving the way for accelerating NP discovery towards biotechnological applications. Herein, we emphasize the most innovative high-throughput tools and methods for advancing bioactivity screening, NP chemical analysis, dereplication, metabolite profiling, metabolomics, genome sequencing and/or genomics approaches, databases, bioinformatics, chemoinformatics, and three-dimensional NP structure elucidation.
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- 2023
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15. From the sea to aquafeed: A perspective overview
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Eroldoğan, Orhan Tufan, Glencross, Brett, Novoveska, Lucie, Gaudêncio, Susana P., Rinkevich, Buki, Varese, Giovanna Cristina, de Fátima Carvalho, Maria, Tasdemir, Deniz, Safarik, Ivo, Nielsen, Søren Laurentius, Rebours, Céline, Lada, Lukić Bilela, Robbens, Johan, Strode, Evita, Haznedaroğlu, Berat Z., Kotta, Jonne, Evliyaoğlu, Ece, Oliveira, Juliana, Girão, Mariana, Vasquez, Marlen I., Čabarkapa, Ivana, Rakita, Slađana, Klun, Katja, Rotter, Ana, Eroldoğan, Orhan Tufan, Glencross, Brett, Novoveska, Lucie, Gaudêncio, Susana P., Rinkevich, Buki, Varese, Giovanna Cristina, de Fátima Carvalho, Maria, Tasdemir, Deniz, Safarik, Ivo, Nielsen, Søren Laurentius, Rebours, Céline, Lada, Lukić Bilela, Robbens, Johan, Strode, Evita, Haznedaroğlu, Berat Z., Kotta, Jonne, Evliyaoğlu, Ece, Oliveira, Juliana, Girão, Mariana, Vasquez, Marlen I., Čabarkapa, Ivana, Rakita, Slađana, Klun, Katja, and Rotter, Ana
- Abstract
Aquaculture has been one of the fastest-growing food production systems sectors for over three decades. With its growth, the demand for alternative, cheaper and high-quality feed ingredients is also increasing. Innovation investments on providing new functional feed alternatives have yielded several viable alternative raw materials. Considering all the current feed ingredients, their circular adaption in the aquafeed manufacturing industry is clearly of the utmost importance to achieve sustainable aquaculture in the near future. The use of terrestrial plant materials and animal by-products predominantly used in aquafeed ingredients puts a heavily reliance on terrestrial agroecosystems, which also has its own sustainability concerns. Therefore, the aquafeed industry needs to progress with functional and sustainable alternative raw materials for feed that must be more resilient and consistent, considering a circular perspective. In this review, we assess the current trends in using various marine organisms, ranging from microorganisms (including fungi, thraustochytrids, microalgae and bacteria) to macroalgae and macroinvertebrates as viable biological feed resources. This review focuses on the trend of circular use of resources and the development of new value chains. In this, we present a perspective of promoting novel circular economy value chains that promote the re-use of biological resources as valuable feed ingredients. Thus, we highlight some potentially important marine-derived resources that deserve further investigations for improving or addressing circular aquaculture.
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- 2023
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16. Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation
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European Cooperation in Science and Technology, Fundação para a Ciência e a Tecnologia (Portugal), European Commission, Ministerio de Ciencia e Innovación (España), Agencia Estatal de Investigación (España), Consejo Superior de Investigaciones Científicas (España), Gaudêncio, Susana P., Bayram, Engin, Bilela, Lada Lukic, Cueto, Mercedes, Díaz Marrero, Ana Raquel, Haznedaroglu, Berat Z., Jimenez, Carlos, Mandalakis, Manolis, Pereira, Florbela, Reyes, Fernando, Tasdemir, Deniz, European Cooperation in Science and Technology, Fundação para a Ciência e a Tecnologia (Portugal), European Commission, Ministerio de Ciencia e Innovación (España), Agencia Estatal de Investigación (España), Consejo Superior de Investigaciones Científicas (España), Gaudêncio, Susana P., Bayram, Engin, Bilela, Lada Lukic, Cueto, Mercedes, Díaz Marrero, Ana Raquel, Haznedaroglu, Berat Z., Jimenez, Carlos, Mandalakis, Manolis, Pereira, Florbela, Reyes, Fernando, and Tasdemir, Deniz
- Abstract
Natural Products (NP) are essential for the discovery of novel drugs and products for numerous biotechnological applications. The NP discovery process is expensive and time-consuming, having as major hurdles dereplication (early identification of known compounds) and structure elucidation, particularly the determination of the absolute configuration of metabolites with stereogenic centers. This review comprehensively focuses on recent technological and instrumental advances, highlighting the development of methods that alleviate these obstacles, paving the way for accelerating NP discovery towards biotechnological applications. Herein, we emphasize the most innovative high-throughput tools and methods for advancing bioactivity screening, NP chemical analysis, dereplication, metabolite profiling, metabolomics, genome sequencing and/or genomics approaches, databases, bioinformatics, chemoinformatics, and three-dimensional NP structure elucidation.
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- 2023
17. Exopolysaccharide production by a marine Pseudoalteromonas sp. strain isolated from Madeira Archipelago ocean sediments
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Roca, Christophe, Lehmann, Mareen, Torres, Cristiana A.V., Baptista, Sílvia, Gaudêncio, Susana P., Freitas, Filomena, and Reis, Maria A.M.
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- 2016
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18. Advanced Methods for Natural Products Discovery
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Gaudêncio, Susana P., Bayram, Engin, Lukić Bilela, Lada, Cueto, Mercedes, Díaz-Marrero, Ana R., Haznedaroglu, Berat Z., Jimenez, Carlos, Mandalakis, Manolis, Pereira, Florbela, Reyes, Fernando, Tasdemir, Deniz, UCIBIO - Applied Molecular Biosciences Unit, DQ - Departamento de Química, and LAQV@REQUIMTE
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molecular networking ,natural products databases ,natural products ,computer assisted structure elucidation (CASE) ,Pharmaceutical Science ,dereplication ,blue biotechnology ,high-throughput screening (HTS) ,relative and absolute configuration determination in structure elucidation ,Drug Discovery ,Global Natural Product Social Molecular Networking (GNPS) ,high throughput next-generation sequencing (HT/NGS) ,informatic chemometrics ,mode of action (MoA) ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) - Abstract
Funding Information: This publication is based upon work from COST Action CA18238 (Ocean4Biotech), funded by the European Cooperation in Science and Technology (COST) Program in the period 2019–2023. SPG: This work is financed by national funds from FCT—Fundação para a Ciência e a Tecnologia, I.P., in the scope of the project LA/P/0140/2020 of the Associate Laboratory Institute for Health and Bioeconomy—i4HB. LLB: The publication is part of a project that has received funding from the Erasmus + Project No. ECOBIAS_609967-EPP-1-2019-1-RS-EPPKA2-CBHE-JP; GA.2019-1991/001-001. Development of master curricula in ecological monitoring and aquatic bioassessment for Western Balkans HEIs/ECOBIAS. CJ: This work was supported by grants PID2021-122732OB-C22 from MCIN/AEI/10.13039/501100011033/FEDER “A way to make Europe” (AEI, Spanish State Agency for Research and FEDER Programme from the European Union) and RTI2018-093634-B-C22 from the State Agency for Research (AEI) of Spain, co-funded by the FEDER Programme from the European Union, and BLUEBIOLAB (0474_BLUEBIOLAB_1_E), Programme INTERREG V A of Spain-Portugal (POCTEP). FP: This work is financed by national funds from FCT—Fundação para a Ciência e a Tecnologia, I.P., for an Assistant Research Position (CEECIND/01649/2021). MC: INTERREG-MAC2/1.1b/279 (AHIDAGRO) and the Ministerio de Ciencia e Innovación (Spain) (grant PID2020-115979RR-C32). ARDM is supported with funds from Proyecto Intramural Especial CSIC [Ref. 202280I032]. Publisher Copyright: © 2023 by the authors. Natural Products (NP) are essential for the discovery of novel drugs and products for numerous biotechnological applications. The NP discovery process is expensive and time-consuming, having as major hurdles dereplication (early identification of known compounds) and structure elucidation, particularly the determination of the absolute configuration of metabolites with stereogenic centers. This review comprehensively focuses on recent technological and instrumental advances, highlighting the development of methods that alleviate these obstacles, paving the way for accelerating NP discovery towards biotechnological applications. Herein, we emphasize the most innovative high-throughput tools and methods for advancing bioactivity screening, NP chemical analysis, dereplication, metabolite profiling, metabolomics, genome sequencing and/or genomics approaches, databases, bioinformatics, chemoinformatics, and three-dimensional NP structure elucidation. publishersversion published
- Published
- 2023
19. The Deep Oceans as a Source for New Treatments for Cancer
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Fenical, William, La Clair, James J., Hughes, Chambers C., Jensen, Paul R., Gaudêncio, Susana P., MacMillan, John B., Shibasaki, Masakatsu, editor, Iino, Masamitsu, editor, and Osada, Hiroyuki, editor
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- 2013
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20. Multiplex De Novo Sequencing of Peptide Antibiotics
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Mohimani, Hosein, Liu, Wei-Ting, Yang, Yu-Liang, Gaudêncio, Susana P., Fenical, William, Dorrestein, Pieter C., Pevzner, Pavel A., Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Nierstrasz, Oscar, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Sudan, Madhu, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Vardi, Moshe Y., Series editor, Weikum, Gerhard, Series editor, Istrail, Sorin, editor, Pevzner, Pavel, editor, Waterman, Michael S., editor, Bafna, Vineet, editor, and Sahinalp, S. Cenk, editor
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- 2011
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21. Marine-Derived Actinomycetes: Biodegradation of Plastics and Formation of PHA Bioplastics—A Circular Bioeconomy Approach
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Oliveira, Juliana, primary, Almeida, Pedro L., additional, Sobral, Rita G., additional, Lourenço, Nídia D., additional, and Gaudêncio, Susana P., additional
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- 2022
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22. From the sea to aquafeed: A perspective overview
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Eroldoğan, Orhan Tufan, primary, Glencross, Brett, additional, Novoveska, Lucie, additional, Gaudêncio, Susana P., additional, Rinkevich, Buki, additional, Varese, Giovanna Cristina, additional, de Fátima Carvalho, Maria, additional, Tasdemir, Deniz, additional, Safarik, Ivo, additional, Nielsen, Søren Laurentius, additional, Rebours, Céline, additional, Lada, Lukić Bilela, additional, Robbens, Johan, additional, Strode, Evita, additional, Haznedaroğlu, Berat Z., additional, Kotta, Jonne, additional, Evliyaoğlu, Ece, additional, Oliveira, Juliana, additional, Girão, Mariana, additional, Vasquez, Marlen I., additional, Čabarkapa, Ivana, additional, Rakita, Slađana, additional, Klun, Katja, additional, and Rotter, Ana, additional
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- 2022
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23. Gaps Analysis and Recommendations for Increased Knowledge in the Marine Biotechnology Community
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Schneider, Xenia Theodotou, Stroil, Belma Kalamujić, Tourapi, Christiana, Rebours, Céline, Gaudêncio, Susana P., Novoveska, Lucie, Vasquez, Marlen I., and UCIBIO - Applied Molecular Biosciences Unit
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blue biotechnology ,sustainable blue economy ,Responsible Research and Innovation (RRI) ,marine micro-and macro-organisms ,Drug Discovery ,marine natural products ,convention on biological diversity ,legal and ethical compliance workflow ,SDG 14 - Life Below Water ,marine biotechnology ,Nagoya Protocol ,marine genetic resources ,policy recommendations - Abstract
Funding Information: Funding: This publication is based upon work from COST Action CA18238 (Ocean4Biotech), funded by the European Cooperation in Science and Technology (COST) Program in the period 2019–2023. The work of Stroil, B.K was cofounded by the COST Action CA18238 through the Virtual Mobility grant. This work is financed by national funds from FCT—Fundação para a Ciência e a Tecnolo-gia, IP, in the scope of the project UIDP/04378/2020 of the Research Unit on Applied Molecular Biosciences—UCIBIO and the project LA/P/0140/2020 of the Associate Laboratory Institute for Health and Bioeconomy—i4HB. This work is also financed by the Research Council of Norway (NCR319577SAFERIMTA) and Møreforsking AS. Publisher Copyright: © 2022 by the authors. Licensee MDPI, Basel, Switzerland. As the quest for marine-derived compounds with pharmacological and biotechnological potential upsurges, the importance of following regulations and applying Responsible Research and Innovation (RRI) also increases. This article aims at: (1) presenting an overview of regulations and policies at the international and EU level, while demonstrating a variability in their implementation; (2) highlighting the importance of RRI in biodiscovery; and (3) identifying gaps and providing recommendations on how to improve the market acceptability and compliance of novel Blue Biotechnology compounds. This article is the result of the work of the Working Group 4 “Legal aspects, IPR and Ethics” of the COST Action CA18238 Ocean4Biotech, a network of more than 130 Marine Biotechnology scientists and practitioners from 37 countries. Three qualitative surveys (“Understanding of the Responsible Research and Innovation concept”, “Application of the Nagoya Protocol in Your Research”, and “Brief Survey about the experiences regarding the Nagoya Protocol”) indicate awareness and application gaps of RRI, the Nagoya Protocol, and the current status of EU policies relating to Blue Biotechnology. The article categorises the identified gaps into five main categories (awareness, understanding, education, implementation, and enforcement of the Nagoya Protocol) and provides recommendations for mitigating them at the European, national, and organisational level. publishersversion published
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- 2022
24. The Diversity, Metabolomics Profiling, and the Pharmacological Potential of Actinomycetes Isolated from the Estremadura Spur Pockmarks (Portugal)
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Pinto-Almeida, António, Bauermeister, Anelize, Luppino, Luca, Grilo, Inês R., Oliveira, Juliana, Sousa, Joana R., Petras, Daniel, Rodrigues, Clara F., Prieto-Davó, Alejandra, Tasdemir, Deniz, Sobral, Rita G., Gaudêncio, Susana P., Pinto-Almeida, António, Bauermeister, Anelize, Luppino, Luca, Grilo, Inês R., Oliveira, Juliana, Sousa, Joana R., Petras, Daniel, Rodrigues, Clara F., Prieto-Davó, Alejandra, Tasdemir, Deniz, Sobral, Rita G., and Gaudêncio, Susana P.
- Abstract
The Estremadura Spur pockmarks are a unique and unexplored ecosystem located in the North Atlantic, off the coast of Portugal. A total of 85 marine-derived actinomycetes were isolated and cultured from sediments collected from this ecosystem at a depth of 200 to 350 m. Nine genera, Streptomyces, Micromonospora, Saccharopolyspora, Actinomadura, Actinopolymorpha, Nocardiopsis, Saccharomonospora, Stackebrandtia, and Verrucosispora were identified by 16S rRNA gene sequencing analyses, from which the first two were the most predominant. Non-targeted LC-MS/MS, in combination with molecular networking, revealed high metabolite diversity, including several known metabolites, such as surugamide, antimycin, etamycin, physostigmine, desferrioxamine, ikarugamycin, piericidine, and rakicidin derivatives, as well as numerous unidentified metabolites. Taxonomy was the strongest parameter influencing the metabolite production, highlighting the different biosynthetic potentials of phylogenetically related actinomycetes; the majority of the chemical classes can be used as chemotaxonomic markers, as the metabolite distribution was mostly genera-specific. The EtOAc extracts of the actinomycete isolates demonstrated antimicrobial and antioxidant activity. Altogether, this study demonstrates that the Estremadura Spur is a source of actinomycetes with potential applications for biotechnology. It highlights the importance of investigating actinomycetes from unique ecosystems, such as pockmarks, as the metabolite production reflects their adaptation to this habitat.
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- 2022
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25. From the sea to aquafeed: A perspective overview
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Eroldoğan, Orhan Tufan, Glencross, Brett, Novoveska, Lucie, Gaudêncio, Susana P., Rinkevich, Buki, Varese, Giovanna Cristina, de Fátima Carvalho, Maria, Tasdemir, Deniz, Safarik, Ivo, Nielsen, Søren Laurentius, Rebours, Céline, Lada, Lukić Bilela, Robbens, Johan, Strode, Evita, Haznedaroğlu, Berat Z., Kotta, Jonne, Evliyaoğlu, Ece, Oliveira, Juliana, Girão, Mariana, Vasquez, Marlen I., Čabarkapa, Ivana, Rakita, Slađana, Klun, Katja, Rotter, Ana, Eroldoğan, Orhan Tufan, Glencross, Brett, Novoveska, Lucie, Gaudêncio, Susana P., Rinkevich, Buki, Varese, Giovanna Cristina, de Fátima Carvalho, Maria, Tasdemir, Deniz, Safarik, Ivo, Nielsen, Søren Laurentius, Rebours, Céline, Lada, Lukić Bilela, Robbens, Johan, Strode, Evita, Haznedaroğlu, Berat Z., Kotta, Jonne, Evliyaoğlu, Ece, Oliveira, Juliana, Girão, Mariana, Vasquez, Marlen I., Čabarkapa, Ivana, Rakita, Slađana, Klun, Katja, and Rotter, Ana
- Abstract
Aquaculture has been one of the fastest-growing food production systems sectors for over three decades. With its growth, the demand for alternative, cheaper and high-quality feed ingredients is also increasing. Innovation investments on providing new functional feed alternatives have yielded several viable alternative raw materials. Considering all the current feed ingredients, their circular adaption in the aquafeed manufacturing industry is clearly of the utmost importance to achieve sustainable aquaculture in the near future. The use of terrestrial plant materials and animal by-products predominantly used in aquafeed ingredients puts a heavily reliance on terrestrial agroecosystems, which also has its own sustainability concerns. Therefore, the aquafeed industry needs to progress with functional and sustainable alternative raw materials for feed that must be more resilient and consistent, considering a circular perspective. In this review, we assess the current trends in using various marine organisms, ranging from microorganisms (including fungi, thraustochytrids, microalgae and bacteria) to macroalgae and macroinvertebrates as viable biological feed resources. This review focuses on the trend of circular use of resources and the development of new value chains. In this, we present a perspective of promoting novel circular economy value chains that promote the re-use of biological resources as valuable feed ingredients. Thus, we highlight some potentially important marine-derived resources that deserve further investigations for improving or addressing circular aquaculture.
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- 2022
- Full Text
- View/download PDF
26. Marine anticancer agents: an overview with a particular focus on their chemical classes
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Barreca, Marilia, Spanò, Virginia, Montalbano, Alessandra, Cueto, Mercedes, Díaz Marrero, Ana R., Deniz, Irem, Erdoğan, Ayşegül, Lukić Bilela, Lada, Moulin, Corentin, Taffin-de-Givenchy, Elisabeth, Spriano, Filippo, Perale, Giuseppe, Mehiri, Mohamed, Rotter, Ana, Thomas, Olivier P., Barraja, Paola, Gaudêncio, Susana P., Bertoni, Francesco, Barreca, Marilia, Spanò, Virginia, Montalbano, Alessandra, Cueto, Mercedes, Díaz Marrero, Ana R., Deniz, Irem, Erdoğan, Ayşegül, Lukić Bilela, Lada, Moulin, Corentin, Taffin-de-Givenchy, Elisabeth, Spriano, Filippo, Perale, Giuseppe, Mehiri, Mohamed, Rotter, Ana, Thomas, Olivier P., Barraja, Paola, Gaudêncio, Susana P., and Bertoni, Francesco
- Abstract
The marine environment is a rich source of biologically active molecules for the treatment of human diseases, especially cancer. The adaptation to unique environmental conditions led marine organisms to evolve different pathways than their terrestrial counterparts, thus producing unique chemicals with a broad diversity and complexity. So far, more than 36,000 compounds have been isolated from marine micro- and macro-organisms including but not limited to fungi, bacteria, microalgae, macroalgae, sponges, corals, mollusks and tunicates, with hundreds of new marine natural products (MNPs) being discovered every year. Marine-based pharmaceuticals have started to impact modern pharmacology and different anti- cancer drugs derived from marine compounds have been approved for clinical use, such as: cytarabine, vidarabine, nelarabine (prodrug of ara-G), fludarabine phosphate (pro-drug of ara-A), trabectedin, eribulin mesylate, brentuximab vedotin, polatuzumab vedotin, enfortumab vedotin, belantamab mafodotin, plitidepsin, and lurbinectedin. This review focuses on the bioactive molecules derived from the marine environment with anticancer activity, discussing their families, origin, structural features and therapeutic use.
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- 2022
27. Responsible Research and Innovation Framework, the Nagoya Protocol and Other European Blue Biotechnology Strategies and Regulations: Gaps Analysis and Recommendations for Increased Knowledge in the Marine Biotechnology Community
- Author
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Schneider, Xenia Theodotou, primary, Stroil, Belma Kalamujić, additional, Tourapi, Christiana, additional, Rebours, Céline, additional, Gaudêncio, Susana P., additional, Novoveska, Lucie, additional, and Vasquez, Marlen I., additional
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- 2022
- Full Text
- View/download PDF
28. Editorial: Marine Biotechnology, Revealing an Ocean of Opportunities
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Rotter, Ana, primary, Gaudêncio, Susana P., additional, Dubnika, Arita, additional, and Vasquez, Marlen I., additional
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- 2022
- Full Text
- View/download PDF
29. Predicting Antifouling Activity and Acetylcholinesterase Inhibition of Marine-Derived Compounds Using a Computer-Aided Drug Design Approach
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Gaudêncio, Susana P., primary and Pereira, Florbela, additional
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- 2022
- Full Text
- View/download PDF
30. The Diversity, Metabolomics Profiling, and the Pharmacological Potential of Actinomycetes Isolated from the Estremadura Spur Pockmarks (Portugal)
- Author
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Pinto-Almeida, António, primary, Bauermeister, Anelize, additional, Luppino, Luca, additional, Grilo, Inês R., additional, Oliveira, Juliana, additional, Sousa, Joana R., additional, Petras, Daniel, additional, Rodrigues, Clara F., additional, Prieto-Davó, Alejandra, additional, Tasdemir, Deniz, additional, Sobral, Rita G., additional, and Gaudêncio, Susana P., additional
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- 2021
- Full Text
- View/download PDF
31. Valorization of Marine Waste: Use of Industrial By-Products and Beach Wrack Towards the Production of High Added-Value Products
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Rudovica, Vita, primary, Rotter, Ana, additional, Gaudêncio, Susana P., additional, Novoveská, Lucie, additional, Akgül, Füsun, additional, Akslen-Hoel, Linn Kristin, additional, Alexandrino, Diogo A. M., additional, Anne, Olga, additional, Arbidans, Lauris, additional, Atanassova, Miroslava, additional, Bełdowska, Magdalena, additional, Bełdowski, Jacek, additional, Bhatnagar, Amit, additional, Bikovens, Oskars, additional, Bisters, Valdis, additional, Carvalho, Maria F., additional, Catalá, Teresa S., additional, Dubnika, Arita, additional, Erdoğan, Ayşegül, additional, Ferrans, Laura, additional, Haznedaroglu, Berat Z., additional, Setyobudi, Roy Hendroko, additional, Graca, Bożena, additional, Grinfelde, Inga, additional, Hogland, William, additional, Ioannou, Efstathia, additional, Jani, Yahya, additional, Kataržytė, Marija, additional, Kikionis, Stefanos, additional, Klun, Katja, additional, Kotta, Jonne, additional, Kriipsalu, Mait, additional, Labidi, Jalel, additional, Lukić Bilela, Lada, additional, Martínez-Sanz, Marta, additional, Oliveira, Juliana, additional, Ozola-Davidane, Ruta, additional, Pilecka-Ulcugaceva, Jovita, additional, Pospiskova, Kristyna, additional, Rebours, Céline, additional, Roussis, Vassilios, additional, López-Rubio, Amparo, additional, Safarik, Ivo, additional, Schmieder, Frank, additional, Stankevica, Karina, additional, Tamm, Toomas, additional, Tasdemir, Deniz, additional, Torres, Cristiana, additional, Varese, Giovanna Cristina, additional, Vincevica-Gaile, Zane, additional, Zekker, Ivar, additional, and Burlakovs, Juris, additional
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- 2021
- Full Text
- View/download PDF
32. The Essentials of Marine Biotechnology
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Rotter, Ana, Barbier, Michéle, Bertoni, Francesco, Bones, Atle M., Cancela, M. Leonor, Carlsson, Jens, Carvalho, Maria F., Cegłowska, Marta, Chirivella-Martorell, Jerónimo, Conk Dalay, Meltem, Cueto, Mercedes, Dailianis, Thanos, Deniz, Irem, Díaz-Marrero, Ana R., Drakulovic, Dragana, Dubnika, Arita, Edwards, Christine, Einarsson, Hjörleifur, Erdoǧan, Ayşegül, Eroldoǧan, Orhan Tufan, Ezra, David, Fazi, Stefano, FitzGerald, Richard J., Gargan, Laura M., Gaudêncio, Susana P., Gligora Udovič, Marija, Ivošević DeNardis, Nadica, Jónsdóttir, Rósa, Kataržytė, Marija, Klun, Katja, Kotta, Jonne, Ktari, Leila, Ljubešić, Zrinka, Lukić Bilela, Lada, Mandalakis, Manolis, Massa-Gallucci, Alexia, Matijošytė, Inga, Mazur-Marzec, Hanna, Mehiri, Mohamed, Nielsen, Søren Laurentius, Novoveská, Lucie, Overlingė, Donata, Perale, Giuseppe, Ramasamy, Praveen, Rebours, Céline, Reinsch, Thorsten, Reyes, Fernando, Rinkevich, Baruch, Robbens, Johan, Röttinger, Eric, Rudovica, Vita, Sabotič, Jerica, Safarik, Ivo, Talve, Siret, Tasdemir, Deniz, Theodotou Schneider, Xenia, Thomas, Olivier P., Toruńska-Sitarz, Anna, Varese, Giovanna Cristina, Vasquez, Marlen I., Rotter, Ana, Barbier, Michéle, Bertoni, Francesco, Bones, Atle M., Cancela, M. Leonor, Carlsson, Jens, Carvalho, Maria F., Cegłowska, Marta, Chirivella-Martorell, Jerónimo, Conk Dalay, Meltem, Cueto, Mercedes, Dailianis, Thanos, Deniz, Irem, Díaz-Marrero, Ana R., Drakulovic, Dragana, Dubnika, Arita, Edwards, Christine, Einarsson, Hjörleifur, Erdoǧan, Ayşegül, Eroldoǧan, Orhan Tufan, Ezra, David, Fazi, Stefano, FitzGerald, Richard J., Gargan, Laura M., Gaudêncio, Susana P., Gligora Udovič, Marija, Ivošević DeNardis, Nadica, Jónsdóttir, Rósa, Kataržytė, Marija, Klun, Katja, Kotta, Jonne, Ktari, Leila, Ljubešić, Zrinka, Lukić Bilela, Lada, Mandalakis, Manolis, Massa-Gallucci, Alexia, Matijošytė, Inga, Mazur-Marzec, Hanna, Mehiri, Mohamed, Nielsen, Søren Laurentius, Novoveská, Lucie, Overlingė, Donata, Perale, Giuseppe, Ramasamy, Praveen, Rebours, Céline, Reinsch, Thorsten, Reyes, Fernando, Rinkevich, Baruch, Robbens, Johan, Röttinger, Eric, Rudovica, Vita, Sabotič, Jerica, Safarik, Ivo, Talve, Siret, Tasdemir, Deniz, Theodotou Schneider, Xenia, Thomas, Olivier P., Toruńska-Sitarz, Anna, Varese, Giovanna Cristina, and Vasquez, Marlen I.
- Abstract
Coastal countries have traditionally relied on the existing marine resources (e.g., fishing, food, transport, recreation, and tourism) as well as tried to support new economic endeavors (ocean energy, desalination for water supply, and seabed mining). Modern societies and lifestyle resulted in an increased demand for dietary diversity, better health and well-being, new biomedicines, natural cosmeceuticals, environmental conservation, and sustainable energy sources. These societal needs stimulated the interest of researchers on the diverse and underexplored marine environments as promising and sustainable sources of biomolecules and biomass, and they are addressed by the emerging field of marine (blue) biotechnology. Blue biotechnology provides opportunities for a wide range of initiatives of commercial interest for the pharmaceutical, biomedical, cosmetic, nutraceutical, food, feed, agricultural, and related industries. This article synthesizes the essence, opportunities, responsibilities, and challenges encountered in marine biotechnology and outlines the attainment and valorization of directly derived or bio-inspired products from marine organisms. First, the concept of bioeconomy is introduced. Then, the diversity of marine bioresources including an overview of the most prominent marine organisms and their potential for biotechnological uses are described. This is followed by introducing methodologies for exploration of these resources and the main use case scenarios in energy, food and feed, agronomy, bioremediation and climate change, cosmeceuticals, bio-inspired materials, healthcare, and well-being sectors. The key aspects in the fields of legislation and funding are provided, with the emphasis on the importance of communication and stakeholder engagement at all levels of biotechnology development. Finally, vital overarching concepts, such as the quadruple helix and Responsible Research and Innovation principle are highlighted as important to follow within th
- Published
- 2021
- Full Text
- View/download PDF
33. Valorization of Marine Waste: Use of Industrial By-Products and Beach Wrack Towards the Production of High Added-Value Products
- Author
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Rudovica, Vita, Rotter, Ana, Gaudêncio, Susana P., Novoveská, Lucie, Akgül, Füsun, Akslen-Hoel, Linn Kristin, Alexandrino, Diogo A. M., Anne, Olga, Arbidans, Lauris, Atanassova, Miroslava, Bełdowska, Magdalena, Bełdowski, Jacek, Bhatnagar, Amit, Bikovens, Oskars, Bisters, Valdis, Carvalho, Maria F., Catalá, Teresa S., Dubnika, Arita, Erdoğan, Ayşegül, Ferrans, Laura, Haznedaroglu, Berat Z., Setyobudi, Roy Hendroko, Graca, Bożena, Grinfelde, Inga, Hogland, William, Ioannou, Efstathia, Jani, Yahya, Kataržytė, Marija, Kikionis, Stefanos, Klun, Katja, Kotta, Jonne, Kriipsalu, Mait, Labidi, Jalel, Lukić Bilela, Lada, Martínez-Sanz, Marta, Oliveira, Juliana, Ozola-Davidane, Ruta, Pilecka-Ulcugaceva, Jovita, Pospiskova, Kristyna, Rebours, Céline, Roussis, Vassilios, López-Rubio, Amparo, Safarik, Ivo, Schmieder, Frank, Stankevica, Karina, Tamm, Toomas, Tasdemir, Deniz, Torres, Cristiana, Varese, Giovanna Cristina, Vincevica-Gaile, Zane, Zekker, Ivar, Burlakovs, Juris, Rudovica, Vita, Rotter, Ana, Gaudêncio, Susana P., Novoveská, Lucie, Akgül, Füsun, Akslen-Hoel, Linn Kristin, Alexandrino, Diogo A. M., Anne, Olga, Arbidans, Lauris, Atanassova, Miroslava, Bełdowska, Magdalena, Bełdowski, Jacek, Bhatnagar, Amit, Bikovens, Oskars, Bisters, Valdis, Carvalho, Maria F., Catalá, Teresa S., Dubnika, Arita, Erdoğan, Ayşegül, Ferrans, Laura, Haznedaroglu, Berat Z., Setyobudi, Roy Hendroko, Graca, Bożena, Grinfelde, Inga, Hogland, William, Ioannou, Efstathia, Jani, Yahya, Kataržytė, Marija, Kikionis, Stefanos, Klun, Katja, Kotta, Jonne, Kriipsalu, Mait, Labidi, Jalel, Lukić Bilela, Lada, Martínez-Sanz, Marta, Oliveira, Juliana, Ozola-Davidane, Ruta, Pilecka-Ulcugaceva, Jovita, Pospiskova, Kristyna, Rebours, Céline, Roussis, Vassilios, López-Rubio, Amparo, Safarik, Ivo, Schmieder, Frank, Stankevica, Karina, Tamm, Toomas, Tasdemir, Deniz, Torres, Cristiana, Varese, Giovanna Cristina, Vincevica-Gaile, Zane, Zekker, Ivar, and Burlakovs, Juris
- Abstract
Biomass is defined as organic matter from living organisms represented in all kingdoms. It is recognized to be an excellent source of proteins, polysaccharides and lipids and, as such, embodies a tailored feedstock for new products and processes to apply in green industries. The industrial processes focused on the valorization of terrestrial biomass are well established, but marine sources still represent an untapped resource. Oceans and seas occupy over 70% of the Earth’s surface and are used intensively in worldwide economies through the fishery industry, as logistical routes, for mining ores and exploitation of fossil fuels, among others. All these activities produce waste. The other source of unused biomass derives from the beach wrack or washed-ashore organic material, especially in highly eutrophicated marine ecosystems. The development of high-added-value products from these side streams has been given priority in recent years due to the detection of a broad range of biopolymers, multiple nutrients and functional compounds that could find applications for human consumption or use in livestock/pet food, pharmaceutical and other industries. This review comprises a broad thematic approach in marine waste valorization, addressing the main achievements in marine biotechnology for advancing the circular economy, ranging from bioremediation applications for pollution treatment to energy and valorization for biomedical applications. It also includes a broad overview of the valorization of side streams in three selected case study areas: Norway, Scotland, and the Baltic Sea.
- Published
- 2021
- Full Text
- View/download PDF
34. The Essentials of Marine Biotechnology
- Author
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Slovenian Research Agency, Research Council of Norway, European Maritime and Fisheries Fund, European Commission, Ministerio de Ciencia e Innovación (España), Interreg, Cabildo de Tenerife, Universidad de La Laguna, Fundação para a Ciência e a Tecnologia (Portugal), National Science Centre (Poland), Department of Agriculture, Food and Marine (Ireland), European Cooperation in Science and Technology, Rotter, Ana, Barbier, Michéle, Bertoni, Francesco, Bones, Atle M., Cancela, M. Leonor, Carlsson, Jens, Carvalho, Maria F., Cegłowska, Marta, Chirivella-Martorell, Jerónimo, Conk Dalay, Meltem, Cueto, Mercedes, Dailianis, Thanos, Deniz, Irem, Díaz-Marrero, Ana R., Drakulovic, Dragana, Dubnika, Arita, Edwards, Christine, Einarsson, Hjörleifur, Erdogan, Aysegül, Eroldogan, Orhan Tufan, Ezra, David, Fazi, Stefano, FitzGerald, Richard J., Gargan, Laura M., Gaudêncio, Susana P., Gligora Udovic, Marija, Ivoševic DeNardis, Nadica, Jónsdóttir, Rósa, Kataržytė, Marija, Klun, Katja, Kotta, Jonne, Ktari, Leila, Ljubešić, Zrinka, Lukić Bilela, Lada, Mandalakis, Manolis, Massa-Gallucci, Alexia, Matijošyte, Inga, Mazur-Marzec, Hanna, Mehiri, Mohamed, Laurentius Nielsen, Søren, Novoveská, Lucie, Overlingé, Donata, Perale, Guiseppe, Ramasamy, Praveen, Rebours, Céline, Reinsch, Thorsten, Reyes, Fernando, Rinkevich, Baruch, Robbens, Johan, Röttinger, Eric, Rudovica, Vita, Sabotic, Jerica, Safarik, Ivo, Talve, Siret, Tasdemir, Deniz, Theodotou Schneider, Xenia, Thomas, Olivier P., Torunska-Sitarz, Anna, Varese, Giovanna Cristina, Vasquez, Marlen I., Slovenian Research Agency, Research Council of Norway, European Maritime and Fisheries Fund, European Commission, Ministerio de Ciencia e Innovación (España), Interreg, Cabildo de Tenerife, Universidad de La Laguna, Fundação para a Ciência e a Tecnologia (Portugal), National Science Centre (Poland), Department of Agriculture, Food and Marine (Ireland), European Cooperation in Science and Technology, Rotter, Ana, Barbier, Michéle, Bertoni, Francesco, Bones, Atle M., Cancela, M. Leonor, Carlsson, Jens, Carvalho, Maria F., Cegłowska, Marta, Chirivella-Martorell, Jerónimo, Conk Dalay, Meltem, Cueto, Mercedes, Dailianis, Thanos, Deniz, Irem, Díaz-Marrero, Ana R., Drakulovic, Dragana, Dubnika, Arita, Edwards, Christine, Einarsson, Hjörleifur, Erdogan, Aysegül, Eroldogan, Orhan Tufan, Ezra, David, Fazi, Stefano, FitzGerald, Richard J., Gargan, Laura M., Gaudêncio, Susana P., Gligora Udovic, Marija, Ivoševic DeNardis, Nadica, Jónsdóttir, Rósa, Kataržytė, Marija, Klun, Katja, Kotta, Jonne, Ktari, Leila, Ljubešić, Zrinka, Lukić Bilela, Lada, Mandalakis, Manolis, Massa-Gallucci, Alexia, Matijošyte, Inga, Mazur-Marzec, Hanna, Mehiri, Mohamed, Laurentius Nielsen, Søren, Novoveská, Lucie, Overlingé, Donata, Perale, Guiseppe, Ramasamy, Praveen, Rebours, Céline, Reinsch, Thorsten, Reyes, Fernando, Rinkevich, Baruch, Robbens, Johan, Röttinger, Eric, Rudovica, Vita, Sabotic, Jerica, Safarik, Ivo, Talve, Siret, Tasdemir, Deniz, Theodotou Schneider, Xenia, Thomas, Olivier P., Torunska-Sitarz, Anna, Varese, Giovanna Cristina, and Vasquez, Marlen I.
- Abstract
Coastal countries have traditionally relied on the existing marine resources (e.g., fishing, food, transport, recreation, and tourism) as well as tried to support new economic endeavors (ocean energy, desalination for water supply, and seabed mining). Modern societies and lifestyle resulted in an increased demand for dietary diversity, better health and well-being, new biomedicines, natural cosmeceuticals, environmental conservation, and sustainable energy sources. These societal needs stimulated the interest of researchers on the diverse and underexplored marine environments as promising and sustainable sources of biomolecules and biomass, and they are addressed by the emerging field of marine (blue) biotechnology. Blue biotechnology provides opportunities for a wide range of initiatives of commercial interest for the pharmaceutical, biomedical, cosmetic, nutraceutical, food, feed, agricultural, and related industries. This article synthesizes the essence, opportunities, responsibilities, and challenges encountered in marine biotechnology and outlines the attainment and valorization of directly derived or bio-inspired products from marine organisms. First, the concept of bioeconomy is introduced. Then, the diversity of marine bioresources including an overview of the most prominent marine organisms and their potential for biotechnological uses are described. This is followed by introducing methodologies for exploration of these resources and the main use case scenarios in energy, food and feed, agronomy, bioremediation and climate change, cosmeceuticals, bio-inspired materials, healthcare, and well-being sectors. The key aspects in the fields of legislation and funding are provided, with the emphasis on the importance of communication and stakeholder engagement at all levels of biotechnology development. Finally, vital overarching concepts, such as the quadruple helix and Responsible Research and Innovation principle are highlighted as important to follow within th
- Published
- 2021
35. Valorization of marine waste: use of Industrial by-products and beach wrack towards the production of high added-value products
- Author
-
European Commission, Fundação para a Ciência e a Tecnologia (Portugal), Rudovica, Vita, Rotter, Ana, Gaudêncio, Susana P., Novoveská, Lucie, Akgül, Füsun, Akslen-Hoel, Linn Kristin, Alexandrino, Diogo A. M., Anne, Olga, Arbidans, Lauris, Atanassova, Miroslava, Bełdowska, Magdalena, Bełdowski, Jacek, Bhatnagar, Amit, Bikovens, Oskars, Bisters, Valdis, Carvalho, Maria F., Catalá, Teresa S., Dubnika, Arita, Erdoğan, Ayşegül, Ferrans, Laura, Haznedaroglu, Berat Z., Hendroko Setyobudi, Roy, Graca, Bożena, Grinfelde, Inga, Hogland, William, Ioannou, Efstathia, Jani, Yahya, Kataržytė, Marija, Kikionis, Stefanos, Klun, Katja, Kotta, Jonne, Kriipsalu, Mait, Labidi, Jalel, Lukić Bilela, Lada, Martínez Sanz, Marta, Oliveira, Juliana, Ozola-Davidane, Ruta, Pilecka-Ulcugaceva, Jovita, Pospiskova, Kristyna, Rebours, Céline, Roussis, Vassilios, López-Rubio, Amparo, Safarik, Ivo, Schmieder, Frank, Stankevica, Karina, Tamm, Toomas, Tasdemir, Deniz, Torres, Cristiana, Varese, Giovanna Cristina, Vincevica-Gaile, Zane, Zekker, Ivar, Burlakovs, Juris, European Commission, Fundação para a Ciência e a Tecnologia (Portugal), Rudovica, Vita, Rotter, Ana, Gaudêncio, Susana P., Novoveská, Lucie, Akgül, Füsun, Akslen-Hoel, Linn Kristin, Alexandrino, Diogo A. M., Anne, Olga, Arbidans, Lauris, Atanassova, Miroslava, Bełdowska, Magdalena, Bełdowski, Jacek, Bhatnagar, Amit, Bikovens, Oskars, Bisters, Valdis, Carvalho, Maria F., Catalá, Teresa S., Dubnika, Arita, Erdoğan, Ayşegül, Ferrans, Laura, Haznedaroglu, Berat Z., Hendroko Setyobudi, Roy, Graca, Bożena, Grinfelde, Inga, Hogland, William, Ioannou, Efstathia, Jani, Yahya, Kataržytė, Marija, Kikionis, Stefanos, Klun, Katja, Kotta, Jonne, Kriipsalu, Mait, Labidi, Jalel, Lukić Bilela, Lada, Martínez Sanz, Marta, Oliveira, Juliana, Ozola-Davidane, Ruta, Pilecka-Ulcugaceva, Jovita, Pospiskova, Kristyna, Rebours, Céline, Roussis, Vassilios, López-Rubio, Amparo, Safarik, Ivo, Schmieder, Frank, Stankevica, Karina, Tamm, Toomas, Tasdemir, Deniz, Torres, Cristiana, Varese, Giovanna Cristina, Vincevica-Gaile, Zane, Zekker, Ivar, and Burlakovs, Juris
- Abstract
Biomass is defined as organic matter from living organisms represented in all kingdoms. It is recognized to be an excellent source of proteins, polysaccharides and lipids and, as such, embodies a tailored feedstock for new products and processes to apply in green industries. The industrial processes focused on the valorization of terrestrial biomass are well established, but marine sources still represent an untapped resource. Oceans and seas occupy over 70% of the Earth’s surface and are used intensively in worldwide economies through the fishery industry, as logistical routes, for mining ores and exploitation of fossil fuels, among others. All these activities produce waste. The other source of unused biomass derives from the beach wrack or washed-ashore organic material, especially in highly eutrophicated marine ecosystems. The development of high-added-value products from these side streams has been given priority in recent years due to the detection of a broad range of biopolymers, multiple nutrients and functional compounds that could find applications for human consumption or use in livestock/pet food, pharmaceutical and other industries. This review comprises a broad thematic approach in marine waste valorization, addressing the main achievements in marine biotechnology for advancing the circular economy, ranging from bioremediation applications for pollution treatment to energy and valorization for biomedical applications. It also includes a broad overview of the valorization of side streams in three selected case study areas: Norway, Scotland, and the Baltic Sea.
- Published
- 2021
36. A New Tool for Faster Construction of Marine Biotechnology Collaborative Networks
- Author
-
Rotter, Ana, primary, Gaudêncio, Susana P., additional, Klun, Katja, additional, Macher, Jan-Niklas, additional, Thomas, Olivier P., additional, Deniz, Irem, additional, Edwards, Christine, additional, Grigalionyte-Bembič, Ernesta, additional, Ljubešić, Zrinka, additional, Robbens, Johan, additional, Varese, Giovanna Cristina, additional, and Vasquez, Marlen I., additional
- Published
- 2021
- Full Text
- View/download PDF
37. Marine Environmental Plastic Pollution: Mitigation by Microorganism Degradation and Recycling Valorization
- Author
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Oliveira, Juliana, Belchior, Afonso, da Silva, Verônica D., Rotter, Ana, Petrovski, Željko, Almeida, Pedro L., Lourenço, Nídia D., Gaudêncio, Susana P., DQ - Departamento de Química, UCIBIO - Applied Molecular Biosciences Unit, LAQV@REQUIMTE, CENIMAT-i3N - Centro de Investigação de Materiais (Lab. Associado I3N), and DCM - Departamento de Ciência dos Materiais
- Subjects
Global and Planetary Change ,marine debris ,plastic and microplastic pollution ,actinobacteria ,Ocean Engineering ,Aquatic Science ,Environmental Science (miscellaneous) ,Oceanography ,biodegradation ,bioplastic production ,SDG 7 - Affordable and Clean Energy ,SDG 14 - Life Below Water ,chemical recycling ,Water Science and Technology - Abstract
UID/Multi/04378/2020 UID/CTM/50025/2020 Slovenian Research Agency (research core funding P1-0245) Plastics are very useful materials and present numerous advantages in the daily life of individuals and society. However, plastics are accumulating in the environment and due to their low biodegradability rate, this problem will persist for centuries. Until recently, oceans were treated as places to dispose of litter, thus the persistent substances are causing serious pollution issues. Plastic and microplastic waste has a negative environmental, social, and economic impact, e.g., causing injury/death to marine organisms and entering the food chain, which leads to health problems. The development of solutions and methods to mitigate marine (micro)plastic pollution is in high demand. There is a knowledge gap in this field, reason why research on this thematic is increasing. Recent studies reported the biodegradation of some types of polymers using different bacteria, biofilm forming bacteria, bacterial consortia, and fungi. Biodegradation is influenced by several factors, from the type of microorganism to the type of polymers, their physicochemical properties, and the environment conditions (e.g., temperature, pH, UV radiation). Currently, green environmentally friendly alternatives to plastic made from renewable feedstocks are starting to enter the market. This review covers the period from 1964 to April 2020 and comprehensively gathers investigation on marine plastic and microplastic pollution, negative consequences of plastic use, and bioplastic production. It lists the most useful methods for plastic degradation and recycling valorization, including degradation mediated by microorganisms (biodegradation) and the methods used to detect and analyze the biodegradation. publishersversion published
- Published
- 2020
38. A New Network for the Advancement of Marine Biotechnology in Europe and Beyond
- Author
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Rotter, Ana, Bacu, Ariola, Barbier, Michèle, Bertoni, Francesco, Bones, Atle M., Cancela, M. Leonor, Carlsson, Jens, Carvalho, Maria F., Cegłowska, Marta, Dalay, Meltem Conk, Dailianis, Thanos, Deniz, Irem, Drakulovic, Dragana, Dubnika, Arita, Einarsson, Hjörleifur, Erdoğan, Ayşegül, Eroldoğan, Orhan Tufan, Ezra, David, Fazi, Stefano, FitzGerald, Richard J., Gargan, Laura M., Gaudêncio, Susana P., Ivošević DeNardis, Nadica, Joksimovic, Danijela, Kataržytė, Marija, Kotta, Jonne, Mandalakis, Manolis, Matijošytė, Inga, Mazur-Marzec, Hanna, Massa-Gallucci, Alexia, Mehiri, Mohamed, Nielsen, Søren Laurentius, Novoveská, Lucie, Overlingė, Donata, Portman, Michelle E., Pyrc, Krzysztof, Rebours, Céline, Reinsch, Thorsten, Reyes, Fernando, Rinkevich, Baruch, Robbens, Johan, Rudovica, Vita, Sabotič, Jerica, Safarik, Ivo, Talve, Siret, Tasdemir, Deniz, Schneider, Xenia Theodotou, Thomas, Olivier P., Toruńska-Sitarz, Anna, Varese, Giovanna Cristina, Vasquez, Marlen I., Rotter, Ana, Bacu, Ariola, Barbier, Michèle, Bertoni, Francesco, Bones, Atle M., Cancela, M. Leonor, Carlsson, Jens, Carvalho, Maria F., Cegłowska, Marta, Dalay, Meltem Conk, Dailianis, Thanos, Deniz, Irem, Drakulovic, Dragana, Dubnika, Arita, Einarsson, Hjörleifur, Erdoğan, Ayşegül, Eroldoğan, Orhan Tufan, Ezra, David, Fazi, Stefano, FitzGerald, Richard J., Gargan, Laura M., Gaudêncio, Susana P., Ivošević DeNardis, Nadica, Joksimovic, Danijela, Kataržytė, Marija, Kotta, Jonne, Mandalakis, Manolis, Matijošytė, Inga, Mazur-Marzec, Hanna, Massa-Gallucci, Alexia, Mehiri, Mohamed, Nielsen, Søren Laurentius, Novoveská, Lucie, Overlingė, Donata, Portman, Michelle E., Pyrc, Krzysztof, Rebours, Céline, Reinsch, Thorsten, Reyes, Fernando, Rinkevich, Baruch, Robbens, Johan, Rudovica, Vita, Sabotič, Jerica, Safarik, Ivo, Talve, Siret, Tasdemir, Deniz, Schneider, Xenia Theodotou, Thomas, Olivier P., Toruńska-Sitarz, Anna, Varese, Giovanna Cristina, and Vasquez, Marlen I.
- Abstract
Marine organisms produce a vast diversity of metabolites with biological activities useful for humans, e.g., cytotoxic, antioxidant, anti-microbial, insecticidal, herbicidal, anticancer, pro-osteogenic and pro-regenerative, analgesic, anti-inflammatory, anticoagulant, cholesterol-lowering, nutritional, photoprotective, horticultural or other beneficial properties. These metabolites could help satisfy the increasing demand for alternative sources of nutraceuticals, pharmaceuticals, cosmeceuticals, food, feed, and novel bio-based products. In addition, marine biomass itself can serve as the source material for the production of various bulk commodities (e.g., biofuels, bioplastics, biomaterials). The sustainable exploitation of marine bio-resources and the development of biomolecules and polymers are also known as the growing field of marine biotechnology. Up to now, over 35,000 natural products have been characterized from marine organisms, but many more are yet to be uncovered, as the vast diversity of biota in the marine systems remains largely unexplored. Since marine biotechnology is still in its infancy, there is a need to create effective, operational, inclusive, sustainable, transnational and transdisciplinary networks with a serious and ambitious commitment for knowledge transfer, training provision, dissemination of best practices and identification of the emerging technological trends through science communication activities. A collaborative (net)work is today compelling to provide innovative solutions and products that can be commercialized to contribute to the circular bioeconomy. This perspective article highlights the importance of establishing such collaborative frameworks using the example of Ocean4Biotech, an Action within the European Cooperation in Science and Technology (COST) that connects all and any stakeholders with an interest in marine biotechnology in Europe and beyond.
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- 2020
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39. Marine Anticancer Agents: An Overview with a Particular Focus on Their Chemical Classes
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European Cooperation in Science and Technology, Fundação para a Ciência e a Tecnologia (Portugal), Slovenian Research Agency, Ministerio de Ciencia e Innovación (España), Cabildo de Tenerife, Barreca, Marilia, Spanò, Virginia, Montalbano, Alessandra, Cueto, Mercedes, Díaz Marrero, Ana Raquel, Deniz, Irem, Erdoğan, Ayşegül, Lukić Bilela, Lada, Moulin, Corentin, Taffin-de-Givenchy, Elisabeth, Spriano, Filippo, Perale, Guiseppe, Mehiri, Mohamed, Rotter, Ana, Thomas, Olivier P., Barraja, Paola, Gaudêncio, Susana P., Bertoni, Francesco, European Cooperation in Science and Technology, Fundação para a Ciência e a Tecnologia (Portugal), Slovenian Research Agency, Ministerio de Ciencia e Innovación (España), Cabildo de Tenerife, Barreca, Marilia, Spanò, Virginia, Montalbano, Alessandra, Cueto, Mercedes, Díaz Marrero, Ana Raquel, Deniz, Irem, Erdoğan, Ayşegül, Lukić Bilela, Lada, Moulin, Corentin, Taffin-de-Givenchy, Elisabeth, Spriano, Filippo, Perale, Guiseppe, Mehiri, Mohamed, Rotter, Ana, Thomas, Olivier P., Barraja, Paola, Gaudêncio, Susana P., and Bertoni, Francesco
- Abstract
The marine environment is a rich source of biologically active molecules for the treatment of human diseases, especially cancer. The adaptation to unique environmental conditions led marine organisms to evolve di erent pathways than their terrestrial counterparts, thus producing unique chemicals with a broad diversity and complexity. So far, more than 36,000 compounds have been isolated from marine micro- and macro-organisms including but not limited to fungi, bacteria, microalgae, macroalgae, sponges, corals, mollusks and tunicates, with hundreds of new marine natural products (MNPs) being discovered every year.Marine-based pharmaceuticals have started to impactmodern pharmacology and different anti-cancer drugs derived frommarine compounds have been approved for clinical use, such as: cytarabine, vidarabine, nelarabine (prodrug of ara-G), fludarabine phosphate (pro-drug of ara-A), trabectedin, eribulin mesylate, brentuximab vedotin, polatuzumab vedotin, enfortumab vedotin, belantamab mafodotin, plitidepsin, and lurbinectedin. This review focuses on the bioactive molecules derived from the marine environment with anticancer activity, discussing their families, origin, structural features and therapeutic use.
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- 2020
40. The Essentials of Marine Biotechnology
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Rotter, Ana, primary, Barbier, Michéle, additional, Bertoni, Francesco, additional, Bones, Atle M., additional, Cancela, M. Leonor, additional, Carlsson, Jens, additional, Carvalho, Maria F., additional, Cegłowska, Marta, additional, Chirivella-Martorell, Jerónimo, additional, Conk Dalay, Meltem, additional, Cueto, Mercedes, additional, Dailianis, Thanos, additional, Deniz, Irem, additional, Díaz-Marrero, Ana R., additional, Drakulovic, Dragana, additional, Dubnika, Arita, additional, Edwards, Christine, additional, Einarsson, Hjörleifur, additional, Erdoǧan, Ayşegül, additional, Eroldoǧan, Orhan Tufan, additional, Ezra, David, additional, Fazi, Stefano, additional, FitzGerald, Richard J., additional, Gargan, Laura M., additional, Gaudêncio, Susana P., additional, Gligora Udovič, Marija, additional, Ivošević DeNardis, Nadica, additional, Jónsdóttir, Rósa, additional, Kataržytė, Marija, additional, Klun, Katja, additional, Kotta, Jonne, additional, Ktari, Leila, additional, Ljubešić, Zrinka, additional, Lukić Bilela, Lada, additional, Mandalakis, Manolis, additional, Massa-Gallucci, Alexia, additional, Matijošytė, Inga, additional, Mazur-Marzec, Hanna, additional, Mehiri, Mohamed, additional, Nielsen, Søren Laurentius, additional, Novoveská, Lucie, additional, Overlingė, Donata, additional, Perale, Giuseppe, additional, Ramasamy, Praveen, additional, Rebours, Céline, additional, Reinsch, Thorsten, additional, Reyes, Fernando, additional, Rinkevich, Baruch, additional, Robbens, Johan, additional, Röttinger, Eric, additional, Rudovica, Vita, additional, Sabotič, Jerica, additional, Safarik, Ivo, additional, Talve, Siret, additional, Tasdemir, Deniz, additional, Theodotou Schneider, Xenia, additional, Thomas, Olivier P., additional, Toruńska-Sitarz, Anna, additional, Varese, Giovanna Cristina, additional, and Vasquez, Marlen I., additional
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- 2021
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41. The Deep Oceans as a Source for New Treatments for Cancer
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Fenical, William, primary, La Clair, James J., additional, Hughes, Chambers C., additional, Jensen, Paul R., additional, Gaudêncio, Susana P., additional, and MacMillan, John B., additional
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- 2012
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42. Marine Environmental Plastic Pollution: Mitigation by Microorganism Degradation and Recycling Valorization
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Oliveira, Juliana, primary, Belchior, Afonso, additional, da Silva, Verônica D., additional, Rotter, Ana, additional, Petrovski, Željko, additional, Almeida, Pedro L., additional, Lourenço, Nídia D., additional, and Gaudêncio, Susana P., additional
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- 2020
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43. A Computer-Aided Drug Design Approach to Predict Marine Drug-Like Leads for SARS-CoV-2 Main Protease Inhibition
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Gaudêncio, Susana P., primary and Pereira, Florbela, additional
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- 2020
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44. Marine Anticancer Agents: An Overview with a Particular Focus on Their Chemical Classes
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Barreca, Marilia, primary, Spanò, Virginia, additional, Montalbano, Alessandra, additional, Cueto, Mercedes, additional, Díaz Marrero, Ana R., additional, Deniz, Irem, additional, Erdoğan, Ayşegül, additional, Lukić Bilela, Lada, additional, Moulin, Corentin, additional, Taffin-de-Givenchy, Elisabeth, additional, Spriano, Filippo, additional, Perale, Giuseppe, additional, Mehiri, Mohamed, additional, Rotter, Ana, additional, P. Thomas, Olivier, additional, Barraja, Paola, additional, Gaudêncio, Susana P., additional, and Bertoni, Francesco, additional
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- 2020
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45. A New Network for the Advancement of Marine Biotechnology in Europe and Beyond
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Rotter, Ana, primary, Bacu, Ariola, additional, Barbier, Michèle, additional, Bertoni, Francesco, additional, Bones, Atle M., additional, Cancela, M. Leonor, additional, Carlsson, Jens, additional, Carvalho, Maria F., additional, Cegłowska, Marta, additional, Dalay, Meltem Conk, additional, Dailianis, Thanos, additional, Deniz, Irem, additional, Drakulovic, Dragana, additional, Dubnika, Arita, additional, Einarsson, Hjörleifur, additional, Erdoğan, Ayşegül, additional, Eroldoğan, Orhan Tufan, additional, Ezra, David, additional, Fazi, Stefano, additional, FitzGerald, Richard J., additional, Gargan, Laura M., additional, Gaudêncio, Susana P., additional, Ivošević DeNardis, Nadica, additional, Joksimovic, Danijela, additional, Kataržytė, Marija, additional, Kotta, Jonne, additional, Mandalakis, Manolis, additional, Matijošytė, Inga, additional, Mazur-Marzec, Hanna, additional, Massa-Gallucci, Alexia, additional, Mehiri, Mohamed, additional, Nielsen, Søren Laurentius, additional, Novoveská, Lucie, additional, Overlingė, Donata, additional, Portman, Michelle E., additional, Pyrc, Krzysztof, additional, Rebours, Céline, additional, Reinsch, Thorsten, additional, Reyes, Fernando, additional, Rinkevich, Baruch, additional, Robbens, Johan, additional, Rudovica, Vita, additional, Sabotič, Jerica, additional, Safarik, Ivo, additional, Talve, Siret, additional, Tasdemir, Deniz, additional, Schneider, Xenia Theodotou, additional, Thomas, Olivier P., additional, Toruńska-Sitarz, Anna, additional, Varese, Giovanna Cristina, additional, and Vasquez, Marlen I., additional
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- 2020
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46. Antifouling Napyradiomycins from Marine-Derived Actinomycetes Streptomyces aculeolatus
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Pereira, Florbela, primary, Almeida, Joana R., additional, Paulino, Marisa, additional, Grilo, Inês R., additional, Macedo, Helena, additional, Cunha, Isabel, additional, Sobral, Rita G., additional, Vasconcelos, Vitor, additional, and Gaudêncio, Susana P., additional
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- 2020
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47. Enriching cancer pharmacology with drugs of marine origin
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Jimenez, Paula C., primary, Wilke, Diego V., additional, Branco, Paola C., additional, Bauermeister, Anelize, additional, Rezende‐Teixeira, Paula, additional, Gaudêncio, Susana P., additional, and Costa‐Lotufo, Leticia V., additional
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- 2019
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48. Biological activities of marine-derived actinomycetes: testing the aqueous extracellular phase of Streptomyces aculeolatus
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Fernandes, Ana F., primary, Costa, Lígia, additional, Sousa, Joana R., additional, Zalocha, Justyna, additional, Grilo, Inês R., additional, Sobral, Rita G., additional, Gaudêncio, Susana P., additional, and Gabriela Almeida, M., additional
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- 2019
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49. Intra‐clade metabolomic profiling of MAR4 Streptomyces from the Macaronesia Atlantic region reveals a source of anti‐biofilm metabolites
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Bauermeister, Anelize, primary, Pereira, Florbela, additional, Grilo, Inês R., additional, Godinho, Camila C., additional, Paulino, Marisa, additional, Almeida, Vanessa, additional, Gobbo‐Neto, Leonardo, additional, Prieto‐Davó, Alejandra, additional, Sobral, Rita G., additional, Lopes, Norberto P., additional, and Gaudêncio, Susana P., additional
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- 2019
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50. Enriching cancer pharmacology with drugs of marine origin.
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Jimenez, Paula C., Wilke, Diego V., Branco, Paola C., Bauermeister, Anelize, Rezende‐Teixeira, Paula, Gaudêncio, Susana P., Costa‐Lotufo, Leticia V., Rezende-Teixeira, Paula, and Costa-Lotufo, Leticia V
- Subjects
MARINE natural products ,PHARMACOLOGY ,CANCER chemotherapy ,DRUGS ,CANCER treatment ,MARINE toxins ,CYTARABINE ,BIOTHERAPY ,THERAPEUTIC use of antineoplastic agents ,BIOLOGICAL products ,INVERTEBRATES ,CLINICAL trials ,HETEROCYCLIC compounds ,ANTINEOPLASTIC agents ,RESEARCH funding ,DRUG development ,TUMORS ,MOLECULAR structure ,KETONES ,ANIMALS - Abstract
Marine natural products have proven, over the last half-century, to be effective biological modulators. These molecules have revealed new targets for cancer therapy as well as dissimilar modes of action within typical classes of drugs. In this scenario, innovation from marine-based pharmaceuticals has helped advance cancer chemotherapy in many aspects, as most of these are designated as first-in-class drugs. Here, by examining the path from discovery to development of clinically approved drugs of marine origin for cancer treatment-cytarabine (Cytosar-U®), trabectedin (Yondelis®), eribulin (Halaven®), brentuximab vedotin (Adcetris®), and plitidepsin (Aplidin®)- together with those in late clinical trial phases-lurbinectedin, plinabulin, marizomib, and plocabulin-the present review offers a critical analysis of the contributions given by these new compounds to cancer pharmacotherapy. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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