5,815 results on '"GEHR"'
Search Results
2. AlphaIntegrator: Transformer Action Search for Symbolic Integration Proofs
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Ünsal, Mert, Gehr, Timon, and Vechev, Martin
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Symbolic Computation - Abstract
We present the first correct-by-construction learning-based system for step-by-step mathematical integration. The key idea is to learn a policy, represented by a GPT transformer model, which guides the search for the right mathematical integration rule, to be carried out by a symbolic solver. Concretely, we introduce a symbolic engine with axiomatically correct actions on mathematical expressions, as well as the first dataset for step-by-step integration. Our GPT-style transformer model, trained on this synthetic data, demonstrates strong generalization by surpassing its own data generator in accuracy and efficiency, using 50% fewer search steps. Our experimental results with SoTA LLMs also demonstrate that the standard approach of fine-tuning LLMs on a set of question-answer pairs is insufficient for solving this mathematical task. This motivates the importance of discovering creative methods for combining LLMs with symbolic reasoning engines, of which our work is an instance.
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- 2024
3. Mammals show faster recovery from capture and tagging in human-disturbed landscapes.
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Stiegler, Jonas, Gallagher, Cara, Hering, Robert, Müller, Thomas, Tucker, Marlee, Apollonio, Marco, Arnold, Janosch, Barker, Nancy, Barthel, Leon, Bassano, Bruno, Beest, Floris, Belant, Jerrold, Berger, Anne, Beyer, Dean, Bidner, Laura, Blake, Stephen, Börner, Konstantin, Brivio, Francesca, Brogi, Rudy, Buuveibaatar, Bayarbaatar, Cagnacci, Francesca, Dekker, Jasja, Dentinger, Jane, Duľa, Martin, Duquette, Jarred, Eccard, Jana, Evans, Meaghan, Ferguson, Adam, Fichtel, Claudia, Ford, Adam, Fowler, Nicholas, Gehr, Benedikt, Getz, Wayne, Goheen, Jacob, Goossens, Benoit, Grignolio, Stefano, Haugaard, Lars, Hauptfleisch, Morgan, Heim, Morten, Heurich, Marco, Hewison, Mark, Isbell, Lynne, Janssen, René, Jarnemo, Anders, Jeltsch, Florian, Miloš, Jezek, Kaczensky, Petra, Kamiński, Tomasz, Kappeler, Peter, Kasper, Katharina, Kautz, Todd, Kimmig, Sophia, Kjellander, Petter, Kowalczyk, Rafał, Kramer-Schadt, Stephanie, Kröschel, Max, Krop-Benesch, Anette, Linderoth, Peter, Lobas, Christoph, Lokeny, Peter, Lührs, Mia-Lana, Matsushima, Stephanie, McDonough, Molly, Melzheimer, Jörg, Morellet, Nicolas, Ngatia, Dedan, Obermair, Leopold, Olson, Kirk, Patanant, Kidan, Payne, John, Petroelje, Tyler, Pina, Manuel, Piqué, Josep, Premier, Joseph, Pufelski, Jan, Pyritz, Lennart, Ramanzin, Maurizio, Roeleke, Manuel, Rolandsen, Christer, Saïd, Sonia, Sandfort, Robin, Schmidt, Krzysztof, Schmidt, Niels, Scholz, Carolin, Schubert, Nadine, Selva, Nuria, Sergiel, Agnieszka, Serieys, Laurel, Silovský, Václav, Slotow, Rob, Sönnichsen, Leif, Solberg, Erling, Stelvig, Mikkel, Street, Garrett, Sunde, Peter, Svoboda, Nathan, Thaker, Maria, Tomowski, Maxi, Ullmann, Wiebke, and Vanak, Abi
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Animals ,Humans ,Mammals ,Ecosystem ,Male ,Female ,Locomotion ,Herbivory ,Animals ,Wild ,Behavior ,Animal ,Species Specificity - Abstract
Wildlife tagging provides critical insights into animal movement ecology, physiology, and behavior amid global ecosystem changes. However, the stress induced by capture, handling, and tagging can impact post-release locomotion and activity and, consequently, the interpretation of study results. Here, we analyze post-tagging effects on 1585 individuals of 42 terrestrial mammal species using collar-collected GPS and accelerometer data. Species-specific displacements and overall dynamic body acceleration, as a proxy for activity, were assessed over 20 days post-release to quantify disturbance intensity, recovery duration, and speed. Differences were evaluated, considering species-specific traits and the human footprint of the study region. Over 70% of the analyzed species exhibited significant behavioral changes following collaring events. Herbivores traveled farther with variable activity reactions, while omnivores and carnivores were initially less active and mobile. Recovery duration proved brief, with alterations diminishing within 4-7 tracking days for most species. Herbivores, particularly males, showed quicker displacement recovery (4 days) but slower activity recovery (7 days). Individuals in high human footprint areas displayed faster recovery, indicating adaptation to human disturbance. Our findings emphasize the necessity of extending tracking periods beyond 1 week and particular caution in remote study areas or herbivore-focused research, specifically in smaller mammals.
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- 2024
4. Modular Synthesis of Efficient Quantum Uncomputation
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Venev, Hristo, Gehr, Timon, Dimitrov, Dimitar, and Vechev, Martin
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Computer Science - Programming Languages ,D.3.1 - Abstract
A key challenge of quantum programming is uncomputation: the reversible deallocation of qubits. And while there has been much recent progress on automating uncomputation, state-of-the-art methods are insufficient for handling today's expressive quantum programming languages. A core reason is that they operate on primitive quantum circuits, while quantum programs express computations beyond circuits, for instance, they can capture families of circuits defined recursively in terms of uncomputation and adjoints. In this paper, we introduce the first modular automatic approach to synthesize correct and efficient uncomputation for expressive quantum programs. Our method is based on two core technical contributions: (i) an intermediate representation (IR) that can capture expressive quantum programs and comes with support for uncomputation, and (ii) modular algorithms over that IR for synthesizing uncomputation and adjoints. We have built a complete end-to-end implementation of our method, including an implementation of the IR and the synthesis algorithms, as well as a translation from an expressive fragment of the Silq programming language to our IR and circuit generation from the IR. Our experimental evaluation demonstrates that we can handle programs beyond the capabilities of existing uncomputation approaches, while being competitive on the benchmarks they can handle. More broadly, we show that it is possible to benefit from the greater expressivity and safety offered by high-level quantum languages without sacrificing efficiency., Comment: 25 pages, 9 figures
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- 2024
5. Closed-Loop-Systeme – AID (automatische Insulindosierung) – Realität und Zukunft
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Biester, Torben and Gehr, Bernhard
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- 2024
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6. Glukosemessung und -kontrolle bei Patienten mit Typ-1- oder Typ-2-Diabetes
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Schlüter, Sandra, Deiss, Dorothee, Gehr, Bernhard, Lange, Karin, von Sengbusch, Simone, Thomas, Andreas, Ziegler, Ralph, and Freckmann, Guido
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- 2024
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7. Study protocol: fish oil supplement in prevention of oxaliplatin-induced peripheral neuropathy in adjuvant colorectal cancer patients – a randomized controlled trial. (OxaNeuro)
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Gehr, Nina Lykkegaard, Karlsson, Páll, Timm, Signe, Christensen, Signe, Hvid, Christian Andreas, Peric, Jana, Hansen, Torben Frøstrup, Lauritzen, Lotte, Finnerup, Nanna Brix, and Ventzel, Lise
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- 2024
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8. Diabetes, Sport und Bewegung
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Esefeld, Katrin, Kress, Stephan, Behrens, Meinolf, Zimmer, Peter, Stumvoll, Michael, Thurm, Ulrike, Gehr, Bernhard, Halle, Martin, and Brinkmann, Christian
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- 2024
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9. Mobile Technologien und digitale klinische Studien im Gesundheitswesen
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Gehr, Sinje, Rußmann, Christoph, and Pfannstiel, Mario A., editor
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- 2024
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10. Expression of toxic genes in Methylorubrum extorquens with a tightly repressed, cumate-inducible promoter
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Pöschel, Laura, Gehr, Elisabeth, Jordan, Paulina, Sonntag, Frank, and Buchhaupt, Markus
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- 2023
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11. Computational and experimental analysis of the impact of a sphere on a beam and the resulting modal energy distribution
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Gehr, Felix, Theurich, Timo, Monjaraz-Tec, Carlo, Gross, Johann, Schwarz, Stefan, Hartung, Andreas, and Krack, Malte
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Electrical Engineering and Systems Science - Systems and Control - Abstract
We consider the common problem setting of an elastic sphere impacting on a flexible beam. In contrast to previous studies, we analyze the modal energy distribution induced by the impact, having in mind the particular application of impact vibration absorbers. Also, the beam is analyzed in the clamped-clamped configuration, in addition to the free-free configuration usually considered. We demonstrate that the designed test rig permits to obtain well-repeatable measurements. The measurements are confronted with predictions obtained using two different approaches, state-of-the-art Finite Element Analysis and a recently developed computational approach involving a reduced-order model. The innovative aspect of the latter approach is to achieve a massless contact boundary using component mode synthesis, which reduces the mathematical model order and numerical oscillations. We show that the novel computational approach reduces the numerical effort by 3-4 orders of magnitude compared to state-of-the-art Finite Element Analysis, without compromising the excellent agreement with the measurements.
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- 2022
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12. Regulation of NLRP3 Inflammasome Activation and Inflammatory Exosome Release in Podocytes by Acid Sphingomyelinase During Obesity
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Huang, Dandan, Kidd, Jason M., Zou, Yao, Wu, Xiaoyuan, Gehr, Todd W. B., Li, Pin-Lan, and Li, Guangbi
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- 2023
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13. Evaluating expert‐based habitat suitability information of terrestrial mammals with GPS‐tracking data
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Broekman, Maarten JE, Hilbers, Jelle P, Huijbregts, Mark AJ, Mueller, Thomas, Ali, Abdullahi H, Andrén, Henrik, Altmann, Jeanne, Aronsson, Malin, Attias, Nina, Bartlam‐Brooks, Hattie LA, Beest, Floris M, Belant, Jerrold L, Beyer, Dean E, Bidner, Laura, Blaum, Niels, Boone, Randall B, Boyce, Mark S, Brown, Michael B, Cagnacci, Francesca, Černe, Rok, Chamaillé‐Jammes, Simon, Dejid, Nandintsetseg, Dekker, Jasja, Desbiez, Arnaud LJ, Díaz‐Muñoz, Samuel L, Fennessy, Julian, Fichtel, Claudia, Fischer, Christina, Fisher, Jason T, Fischhoff, Ilya, Ford, Adam T, Fryxell, John M, Gehr, Benedikt, Goheen, Jacob R, Hauptfleisch, Morgan, Hewison, AJ Mark, Hering, Robert, Heurich, Marco, Isbell, Lynne A, Janssen, René, Jeltsch, Florian, Kaczensky, Petra, Kappeler, Peter M, Krofel, Miha, LaPoint, Scott, Latham, A David M, Linnell, John DC, Markham, A Catherine, Mattisson, Jenny, Medici, Emilia Patricia, Mourão, Guilherme Miranda, Van Moorter, Bram, Morato, Ronaldo G, Morellet, Nicolas, Mysterud, Atle, Mwiu, Stephen, Odden, John, Olson, Kirk A, Ornicāns, Aivars, Pagon, Nives, Panzacchi, Manuela, Persson, Jens, Petroelje, Tyler, Rolandsen, Christer Moe, Roshier, David, Rubenstein, Daniel I, Saïd, Sonia, Salemgareyev, Albert R, Sawyer, Hall, Schmidt, Niels Martin, Selva, Nuria, Sergiel, Agnieszka, Stabach, Jared, Stacy‐Dawes, Jenna, Stewart, Frances EC, Stiegler, Jonas, Strand, Olav, Sundaresan, Siva, Svoboda, Nathan J, Ullmann, Wiebke, Voigt, Ulrich, Wall, Jake, Wikelski, Martin, Wilmers, Christopher C, Zięba, Filip, Zwijacz‐Kozica, Tomasz, Schipper, Aafke M, and Tucker, Marlee A
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Climate Action ,expert opinion ,GPS ,habitat suitability ,habitat type ,habitat use ,IUCN ,mammals ,movement ,selection ratio ,telemetry ,Ecology - Abstract
AimMacroecological studies that require habitat suitability data for many species often derive this information from expert opinion. However, expert-based information is inherently subjective and thus prone to errors. The increasing availability of GPS tracking data offers opportunities to evaluate and supplement expert-based information with detailed empirical evidence. Here, we compared expert-based habitat suitability information from the International Union for Conservation of Nature (IUCN) with habitat suitability information derived from GPS-tracking data of 1,498 individuals from 49 mammal species.LocationWorldwide.Time period1998-2021.Major taxa studiedForty-nine terrestrial mammal species.MethodsUsing GPS data, we estimated two measures of habitat suitability for each individual animal: proportional habitat use (proportion of GPS locations within a habitat type), and selection ratio (habitat use relative to its availability). For each individual we then evaluated whether the GPS-based habitat suitability measures were in agreement with the IUCN data. To that end, we calculated the probability that the ranking of empirical habitat suitability measures was in agreement with IUCN's classification into suitable, marginal and unsuitable habitat types.ResultsIUCN habitat suitability data were in accordance with the GPS data (> 95% probability of agreement) for 33 out of 49 species based on proportional habitat use estimates and for 25 out of 49 species based on selection ratios. In addition, 37 and 34 species had a > 50% probability of agreement based on proportional habitat use and selection ratios, respectively.Main conclusionsWe show how GPS-tracking data can be used to evaluate IUCN habitat suitability data. Our findings indicate that for the majority of species included in this study, it is appropriate to use IUCN habitat suitability data in macroecological studies. Furthermore, we show that GPS-tracking data can be used to identify and prioritize species and habitat types for re-evaluation of IUCN habitat suitability data.
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- 2022
14. Comparative effectiveness of treatment approaches for early invasive breast cancer
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Lu, Yan, Meadows, Rachel J., Gehr, Aaron W., Narra, Kalyani, Bullock, Jolonda, Ghabach, Bassam, and Ojha, Rohit P.
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- 2024
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15. Diabetes, Sport und Bewegung
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Esefeld, Katrin, Kress, Stephan, Behrens, Meinolf, Zimmer, Peter, Stumvoll, Michael, Thurm, Ulrike, Gehr, Bernhard, Halle, Martin, and Brinkmann, Christian
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- 2023
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16. Effectiveness of provider communication training for increasing human papillomavirus vaccine initiation at a safety-net health system
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Meadows, Rachel J., Gehr, Aaron W., Lu, Yan, Maynard, Grace, Akpan, Idara N., Taskin, Tanjila, Fulda, Kimberly G., Patel, Divya, Matches, Sarah, Ojha, Rohit P., and Thompson, Erika L.
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- 2024
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17. Towards a Vision of Standardized Competency-Based Training and Assessment Implementation.
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Barbara Buck, Elizabeth Biddle, Liz Gehr, and Kristi Eager
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- 2023
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18. Towards a Vision of Standardized Competency-Based Training and Assessment Implementation
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Buck, Barbara, Biddle, Elizabeth, Gehr, Liz, Eager, Kristi, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Sottilare, Robert A., editor, and Schwarz, Jessica, editor
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- 2023
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19. Glukosemessung und -kontrolle bei Patienten mit Typ-1- oder Typ-2-Diabetes
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Schlüter, Sandra, Deiss, Dorothee, Gehr, Bernhard, Lange, Karin, von Sengbusch, Simone, Thomas, Andreas, Ziegler, Ralph, and Freckmann, Guido
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- 2023
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20. Use of mobile diagnostics and digital clinical trials in cardiology
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Gehr, Sinje, Balasubramaniam, Nandha Kumar, and Russmann, Christoph
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- 2023
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21. Back and forth: day–night alternation between cover types reveals complementary use of habitats in a large herbivore
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De Groeve, Johannes, Van de Weghe, Nico, Ranc, Nathan, Morellet, Nicolas, Bonnot, Nadège C., Gehr, Benedikt, Heurich, Marco, Hewison, A. J. Mark, Kröschel, Max, Linnell, John D. C., Mysterud, Atle, Sandfort, Robin, and Cagnacci, Francesca
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- 2023
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22. Provably Robust Adversarial Examples
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Dimitrov, Dimitar I., Singh, Gagandeep, Gehr, Timon, and Vechev, Martin
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Computer Science - Machine Learning ,Statistics - Machine Learning - Abstract
We introduce the concept of provably robust adversarial examples for deep neural networks - connected input regions constructed from standard adversarial examples which are guaranteed to be robust to a set of real-world perturbations (such as changes in pixel intensity and geometric transformations). We present a novel method called PARADE for generating these regions in a scalable manner which works by iteratively refining the region initially obtained via sampling until a refined region is certified to be adversarial with existing state-of-the-art verifiers. At each step, a novel optimization procedure is applied to maximize the region's volume under the constraint that the convex relaxation of the network behavior with respect to the region implies a chosen bound on the certification objective. Our experimental evaluation shows the effectiveness of PARADE: it successfully finds large provably robust regions including ones containing $\approx 10^{573}$ adversarial examples for pixel intensity and $\approx 10^{599}$ for geometric perturbations. The provability enables our robust examples to be significantly more effective against state-of-the-art defenses based on randomized smoothing than the individual attacks used to construct the regions.
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- 2020
23. Robustness Certification of Generative Models
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Mirman, Matthew, Gehr, Timon, and Vechev, Martin
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Computer Science - Machine Learning ,Computer Science - Cryptography and Security ,Computer Science - Programming Languages ,Statistics - Machine Learning - Abstract
Generative neural networks can be used to specify continuous transformations between images via latent-space interpolation. However, certifying that all images captured by the resulting path in the image manifold satisfy a given property can be very challenging. This is because this set is highly non-convex, thwarting existing scalable robustness analysis methods, which are often based on convex relaxations. We present ApproxLine, a scalable certification method that successfully verifies non-trivial specifications involving generative models and classifiers. ApproxLine can provide both sound deterministic and probabilistic guarantees, by capturing either infinite non-convex sets of neural network activation vectors or distributions over such sets. We show that ApproxLine is practically useful and can verify interesting interpolations in the networks latent space., Comment: Prior version submitted to ICLR 2020
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- 2020
24. Effects of flame made zinc oxide particles in human lung cells - a comparison of aerosol and suspension exposures
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Raemy David O, Grass Robert N, Stark Wendelin J, Schumacher Christoph M, Clift Martin JD, Gehr Peter, and Rothen-Rutishauser Barbara
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Zinc oxide particles ,Aerosol exposure ,Air liquid interface (ALI) ,Suspension exposure ,Toxicology. Poisons ,RA1190-1270 ,Industrial hygiene. Industrial welfare ,HD7260-7780.8 - Abstract
Abstract Background Predominantly, studies of nanoparticle (NPs) toxicology in vitro are based upon the exposure of submerged cell cultures to particle suspensions. Such an approach however, does not reflect particle inhalation. As a more realistic simulation of such a scenario, efforts were made towards direct delivery of aerosols to air-liquid-interface cultivated cell cultures by the use of aerosol exposure systems. This study aims to provide a direct comparison of the effects of zinc oxide (ZnO) NPs when delivered as either an aerosol, or in suspension to a triple cell co-culture model of the epithelial airway barrier. To ensure dose–equivalence, ZnO-deposition was determined in each exposure scenario by atomic absorption spectroscopy. Biological endpoints being investigated after 4 or 24h incubation include cytotoxicity, total reduced glutathione, induction of antioxidative genes such as heme-oxygenase 1 (HO–1) as well as the release of the (pro)-inflammatory cytokine TNFα. Results Off-gases released as by-product of flame ZnO synthesis caused a significant decrease of total reduced GSH and induced further the release of the cytokine TNFα, demonstrating the influence of the gas phase on aerosol toxicology. No direct effects could be attributed to ZnO particles. By performing suspension exposure to avoid the factor “flame-gases”, particle specific effects become apparent. Other parameters such as LDH and HO–1 were not influenced by gaseous compounds: Following aerosol exposure, LDH levels appeared elevated at both timepoints and the HO–1 transcript correlated positively with deposited ZnO-dose. Under submerged conditions, the HO–1 induction scheme deviated for 4 and 24h and increased extracellular LDH was found following 24h exposure. Conclusion In the current study, aerosol and suspension-exposure has been compared by exposing cell cultures to equivalent amounts of ZnO. Both exposure strategies differ fundamentally in their dose–response pattern. Additional differences can be found for the factor time: In the aerosol scenario, parameters tend to their maximum already after 4h of exposure, whereas under submerged conditions, effects appear most pronounced mainly after 24h. Aerosol exposure provides information about the synergistic interplay of gaseous and particulate phase of an aerosol in the context of inhalation toxicology. Exposure to suspensions represents a valuable complementary method and allows investigations on particle-associated toxicity by excluding all gas–derived effects.
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- 2012
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25. Pulmonary surfactant coating of multi-walled carbon nanotubes (MWCNTs) influences their oxidative and pro-inflammatory potential in vitro
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Gasser Michael, Wick Peter, Clift Martin JD, Blank Fabian, Diener Liliane, Yan Bing, Gehr Peter, Krug Harald F, and Rothen-Rutishauser Barbara
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Multi-walled carbon nanotubes (MWCNTs) ,Pulmonary surfactant (Curosurf) ,Macrophages ,Epithelial cells ,Dendritic cells ,Triple cell co-culture ,Pro-inflammatory and oxidative reactions ,Toxicology. Poisons ,RA1190-1270 ,Industrial hygiene. Industrial welfare ,HD7260-7780.8 - Abstract
Abstract Background Increasing concern has been expressed regarding the potential adverse health effects that may be associated with human exposure to inhaled multi-walled carbon nanotubes (MWCNTs). Thus it is imperative that an understanding as to the underlying mechanisms and the identification of the key factors involved in adverse effects are gained. In the alveoli, MWCNTs first interact with the pulmonary surfactant. At this interface, proteins and lipids of the pulmonary surfactant bind to MWCNTs, affecting their surface characteristics. Aim of the present study was to investigate if the pre-coating of MWCNTs with pulmonary surfactant has an influence on potential adverse effects, upon both (i) human monocyte derived macrophages (MDM) monocultures, and (ii) a sophisticated in vitro model of the human epithelial airway barrier. Both in vitro systems were exposed to MWCNTs either pre-coated with a porcine pulmonary surfactant (Curosurf) or not. The effect of MWCNTs surface charge was also investigated in terms of amino (−NH2) and carboxyl (−COOH) surface modifications. Results Pre-coating of MWCNTs with Curosurf affects their oxidative potential by increasing the reactive oxygen species levels and decreasing intracellular glutathione depletion in MDM as well as decreases the release of Tumour necrosis factor alpha (TNF-α). In addition, an induction of apoptosis was observed after exposure to Curosurf pre-coated MWCNTs. In triple cell-co cultures the release of Interleukin-8 (IL-8) was increased after exposure to Curosurf pre-coated MWCNTs. Effects of the MWCNTs functionalizations were minor in both MDM and triple cell co-cultures. Conclusions The present study clearly indicates that the pre-coating of MWCNTs with pulmonary surfactant more than the functionalization of the tubes is a key factor in determining their ability to cause oxidative stress, cytokine/chemokine release and apoptosis. Thus the coating of nano-objects with pulmonary surfactant should be considered for future lung in vitro risk assessment studies.
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- 2012
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26. Surfactant Protein D modulates allergen particle uptake and inflammatory response in a human epithelial airway model
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Schleh Carsten, Rothen-Rutishauser Barbara M, Blank Fabian, Lauenstein Hans D, Nassimi Matthias, Krug Norbert, Braun Armin, Erpenbeck Veit J, Gehr Peter, and Hohlfeld Jens M
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Allergen Particle ,Subpollen Particles ,SPP ,Surfactant Protein D ,SP-D ,Cytokines ,Diseases of the respiratory system ,RC705-779 - Abstract
Abstract Background Allergen-containing subpollen particles (SPP) are released from whole plant pollen upon contact with water or even high humidity. Because of their size SPP can preferentially reach the lower airways where they come into contact with surfactant protein (SP)-D. The aim of the present study was to investigate the influence of SP-D in a complex three-dimensional human epithelial airway model, which simulates the most important barrier functions of the epithelial airway. The uptake of SPP as well as the secretion of pro-inflammatory cytokines was investigated. Methods SPP were isolated from timothy grass and subsequently fluorescently labeled. A human epithelial airway model was built by using human Type II-pneumocyte like cells (A549 cells), human monocyte derived macrophages as well as human monocyte derived dendritic cells. The epithelial cell model was incubated with SPP in the presence and absence of surfactant protein D. Particle uptake was evaluated by confocal microscopy and advanced computer-controlled analysis. Finally, human primary CD4+ T-Cells were added to the epithelial airway model and soluble mediators were measured by enzyme linked immunosorbent assay or bead array. Results SPP were taken up by epithelial cells, macrophages, and dendritic cells. This uptake coincided with secretion of pro-inflammatory cytokines and chemokines. SP-D modulated the uptake of SPP in a cell type specific way (e.g. increased number of macrophages and epithelial cells, which participated in allergen particle uptake) and led to a decreased secretion of pro-inflammatory cytokines. Conclusion These results display a possible mechanism of how SP-D can modulate the inflammatory response to inhaled allergen.
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- 2012
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27. The adsorption of biomolecules to multi-walled carbon nanotubes is influenced by both pulmonary surfactant lipids and surface chemistry
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Yan Bing, Nelle Mathias, Gehr Peter, Krug Harald F, Rothen-Rutishauser Barbara, Gasser Michael, and Wick Peter
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Biotechnology ,TP248.13-248.65 ,Medical technology ,R855-855.5 - Abstract
Abstract Background During production and processing of multi-walled carbon nanotubes (MWCNTs), they may be inhaled and may enter the pulmonary circulation. It is essential that interactions with involved body fluids like the pulmonary surfactant, the blood and others are investigated, particularly as these interactions could lead to coating of the tubes and may affect their chemical and physical characteristics. The aim of this study was to characterize the possible coatings of different functionalized MWCNTs in a cell free environment. Results To simulate the first contact in the lung, the tubes were coated with pulmonary surfactant and subsequently bound lipids were characterized. The further coating in the blood circulation was simulated by incubating the tubes in blood plasma. MWCNTs were amino (NH2)- and carboxyl (-COOH)-modified, in order to investigate the influence on the bound lipid and protein patterns. It was shown that surfactant lipids bind unspecifically to different functionalized MWCNTs, in contrast to the blood plasma proteins which showed characteristic binding patterns. Patterns of bound surfactant lipids were altered after a subsequent incubation in blood plasma. In addition, it was found that bound plasma protein patterns were altered when MWCNTs were previously coated with pulmonary surfactant. Conclusions A pulmonary surfactant coating and the functionalization of MWCNTs have both the potential to alter the MWCNTs blood plasma protein coating and to determine their properties and behaviour in biological systems.
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- 2010
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28. Intracellular imaging of nanoparticles: Is it an elemental mistake to believe what you see?
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Mühlfeld Christian, Vanhecke Dimitri, Clift Martin JD, Brandenberger Christina, Stone Vicki, Gehr Peter, and Rothen-Rutishauser Barbara
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Toxicology. Poisons ,RA1190-1270 ,Industrial hygiene. Industrial welfare ,HD7260-7780.8 - Abstract
Abstract In order to understand how nanoparticles (NPs J774.A1 murine macrophage-like cells were exposed to NH2 polyethylene (PEG) QDs and elemental co-localization analysis of two elements present in the QDs (sulfur and cadmium) was performed on putative intracellular QDs with electron spectroscopic imaging (ESI). Both elements were shown on a single particle level and QDs were confirmed to be located inside intracellular vesicles. Nevertheless, ESI analysis showed that not all nano-sized structures, initially identified as QDs, were confirmed. This observation emphasizes the necessity to perform elemental analysis when investigating intracellular NP localization using TEM.
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- 2010
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29. Toxic effects of brake wear particles on epithelial lung cells in vitro
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Perrenoud Alain, Mueller Loretta, Riediker Michael, Gasser Michael, Blank Fabian, Gehr Peter, and Rothen-Rutishauser Barbara
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Toxicology. Poisons ,RA1190-1270 ,Industrial hygiene. Industrial welfare ,HD7260-7780.8 - Abstract
Abstract Background Fine particulate matter originating from traffic correlates with increased morbidity and mortality. An important source of traffic particles is brake wear of cars which contributes up to 20% of the total traffic emissions. The aim of this study was to evaluate potential toxicological effects of human epithelial lung cells exposed to freshly generated brake wear particles. Results An exposure box was mounted around a car's braking system. Lung cells cultured at the air-liquid interface were then exposed to particles emitted from two typical braking behaviours („full stop“ and „normal deceleration“). The particle size distribution as well as the brake emission components like metals and carbons was measured on-line, and the particles deposited on grids for transmission electron microscopy were counted. The tight junction arrangement was observed by laser scanning microscopy. Cellular responses were assessed by measurement of lactate dehydrogenase (cytotoxicity), by investigating the production of reactive oxidative species and the release of the pro-inflammatory mediator interleukin-8. The tight junction protein occludin density decreased significantly (p < 0.05) with increasing concentrations of metals on the particles (iron, copper and manganese, which were all strongly correlated with each other). Occludin was also negatively correlated with the intensity of reactive oxidative species. The concentrations of interleukin-8 were significantly correlated with increasing organic carbon concentrations. No correlation was observed between occludin and interleukin-8, nor between reactive oxidative species and interleukin-8. Conclusion These findings suggest that the metals on brake wear particles damage tight junctions with a mechanism involving oxidative stress. Brake wear particles also increase pro-inflammatory responses. However, this might be due to another mechanism than via oxidative stress.
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- 2009
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30. Diesel exhaust particles modulate the tight junction protein occludin in lung cells in vitro
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Baum Oliver, Blank Fabian, Lehmann Andrea D, Gehr Peter, and Rothen-Rutishauser Barbara M
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Toxicology. Poisons ,RA1190-1270 ,Industrial hygiene. Industrial welfare ,HD7260-7780.8 - Abstract
Abstract Background Using an in vitro triple cell co-culture model consisting of human epithelial cells (16HBE14o-), monocyte-derived macrophages and dendritic cells, it was recently demonstrated that macrophages and dendritic cells create a transepithelial network between the epithelial cells to capture antigens without disrupting the epithelial tightness. The expression of the different tight junction proteins in macrophages and dendritic cells, and the formation of tight junction-like structures with epithelial cells has been demonstrated. Immunofluorescent methods combined with laser scanning microscopy and quantitative real-time polymerase chain reaction were used to investigate if exposure to diesel exhaust particles (DEP) (0.5, 5, 50, 125 μg/ml), for 24 h, can modulate the expression of the tight junction mRNA/protein of occludin, in all three cell types. Results Only the highest dose of DEP (125 μg/ml) seemed to reduce the occludin mRNA in the cells of the defence system however not in epithelial cells, although the occludin arrangement in the latter cell type was disrupted. The transepithelial electrical resistance was reduced in epithelial cell mono-cultures but not in the triple cell co-cultures, following exposure to high DEP concentration. Cytotoxicity was not found, in either epithelial mono-cultures nor in triple cell co-cultures, after exposure to the different DEP concentrations. Conclusion We concluded that high concentrations of DEP (125 μg/ml) can modulate the tight junction occludin mRNA in the cells of the defence system and that those cells play an important role maintaining the epithelial integrity following exposure to particulate antigens in lung cells.
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- 2009
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31. Particles induce apical plasma membrane enlargement in epithelial lung cell line depending on particle surface area dose
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Blank Fabian, Rothen-Rutishauser Barbara, Brandenberger Christina, Gehr Peter, and Mühlfeld Christian
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Diseases of the respiratory system ,RC705-779 - Abstract
Abstract Background Airborne particles entering the respiratory tract may interact with the apical plasma membrane (APM) of epithelial cells and enter them. Differences in the entering mechanisms of fine (between 0.1 μm and 2.5 μm) and ultrafine ( ≤ 0.1 μm) particles may be associated with different effects on the APM. Therefore, we studied particle-induced changes in APM surface area in relation to applied and intracellular particle size, surface and number. Methods Human pulmonary epithelial cells (A549 cell line) were incubated with various concentrations of different sized fluorescent polystyrene spheres without surface charge (∅ fine – 1.062 μm, ultrafine – 0.041 μm) by submersed exposure for 24 h. APM surface area of A549 cells was estimated by design-based stereology and transmission electron microscopy. Intracellular particles were visualized and quantified by confocal laser scanning microscopy. Results Particle exposure induced an increase in APM surface area compared to negative control (p < 0.01) at the same surface area concentration of fine and ultrafine particles a finding not observed at low particle concentrations. Ultrafine particle entering was less pronounced than fine particle entering into epithelial cells, however, at the same particle surface area dose, the number of intracellular ultrafine particles was higher than that of fine particles. The number of intracellular particles showed a stronger increase for fine than for ultrafine particles at rising particle concentrations. Conclusion This study demonstrates a particle-induced enlargement of the APM surface area of a pulmonary epithelial cell line, depending on particle surface area dose. Particle uptake by epithelial cells does not seem to be responsible for this effect. We propose that direct interactions between particle surface area and cell membrane cause the enlargement of the APM.
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- 2009
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32. Clinical Physics Boot Camp for Radiation Oncology Residents: A Pilot Study
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Janowski, Einsley-Marie, Romano, Kara, Gehr, Susan, Wood, Emily, Mistro, Matt, Scarboro, Sarah, and Schlesinger, David
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- 2023
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33. Effects of fresh vs dried mango consumption on satiety and postprandial glucose in healthy adults
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Stamper, Candice, Safadi, Sama, Gehr, Andrew, Asuncion, Pia, and Hong, Mee Young
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- 2023
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34. Visualization and quantitative analysis of nanoparticles in the respiratory tract by transmission electron microscopy
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Gehr Peter, Blank Fabian, Vanhecke Dimitri, Rothen-Rutishauser Barbara, Mühlfeld Christian, and Ochs Matthias
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Toxicology. Poisons ,RA1190-1270 ,Industrial hygiene. Industrial welfare ,HD7260-7780.8 - Abstract
Abstract Nanotechnology in its widest sense seeks to exploit the special biophysical and chemical properties of materials at the nanoscale. While the potential technological, diagnostic or therapeutic applications are promising there is a growing body of evidence that the special technological features of nanoparticulate material are associated with biological effects formerly not attributed to the same materials at a larger particle scale. Therefore, studies that address the potential hazards of nanoparticles on biological systems including human health are required. Due to its large surface area the lung is one of the major sites of interaction with inhaled nanoparticles. One of the great challenges of studying particle-lung interactions is the microscopic visualization of nanoparticles within tissues or single cells both in vivo and in vitro. Once a certain type of nanoparticle can be identified unambiguously using microscopic methods it is desirable to quantify the particle distribution within a cell, an organ or the whole organism. Transmission electron microscopy provides an ideal tool to perform qualitative and quantitative analyses of particle-related structural changes of the respiratory tract, to reveal the localization of nanoparticles within tissues and cells and to investigate the 3D nature of nanoparticle-lung interactions. This article provides information on the applicability, advantages and disadvantages of electron microscopic preparation techniques and several advanced transmission electron microscopic methods including conventional, immuno and energy-filtered electron microscopy as well as electron tomography for the visualization of both model nanoparticles (e.g. polystyrene) and technologically relevant nanoparticles (e.g. titanium dioxide). Furthermore, we highlight possibilities to combine light and electron microscopic techniques in a correlative approach. Finally, we demonstrate a formal quantitative, i.e. stereological approach to analyze the distributions of nanoparticles in tissues and cells. This comprehensive article aims to provide a basis for scientists in nanoparticle research to integrate electron microscopic analyses into their study design and to select the appropriate microscopic strategy.
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- 2007
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35. Translocation of particles and inflammatory responses after exposure to fine particles and nanoparticles in an epithelial airway model
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Musso Claudia, Blank Fabian, Mühlfeld Christian, Rothen-Rutishauser Barbara, and Gehr Peter
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Toxicology. Poisons ,RA1190-1270 ,Industrial hygiene. Industrial welfare ,HD7260-7780.8 - Abstract
Abstract Background Experimental studies provide evidence that inhaled nanoparticles may translocate over the airspace epithelium and cause increased cellular inflammation. Little is known, however, about the dependence of particle size or material on translocation characteristics, inflammatory response and intracellular localization. Results Using a triple cell co-culture model of the human airway wall composed of epithelial cells, macrophages and dendritic cells we quantified the entering of fine (1 μm) and nano-sized (0.078 μm) polystyrene particles by laser scanning microscopy. The number distribution of particles within the cell types was significantly different between fine and nano-sized particles suggesting different translocation characteristics. Analysis of the intracellular localization of gold (0.025 μm) and titanium dioxide (0.02–0.03 μm) nanoparticles by energy filtering transmission electron microscopy showed differences in intracellular localization depending on particle composition. Titanium dioxide nanoparticles were detected as single particles without membranes as well as in membrane-bound agglomerations. Gold nanoparticles were found inside the cells as free particles only. The potential of the different particle types (different sizes and different materials) to induce a cellular response was determined by measurements of the tumour necrosis factor-α in the supernatants. We measured a 2–3 fold increase of tumour necrosis factor-α in the supernatants after applying 1 μm polystyrene particles, gold nanoparticles, but not with polystyrene and titanium dioxide nanoparticles. Conclusion Quantitative laser scanning microscopy provided evidence that the translocation and entering characteristics of particles are size-dependent. Energy filtering transmission electron microscopy showed that the intracellular localization of nanoparticles depends on the particle material. Both particle size and material affect the cellular responses to particle exposure as measured by the generation of tumour necrosis factor-α.
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- 2007
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36. Re-evaluation of pulmonary titanium dioxide nanoparticle distribution using the 'relative deposition index': Evidence for clearance through microvasculature
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Gehr Peter, Kapp Nadine, Geiser Marianne, Mühlfeld Christian, and Rothen-Rutishauser Barbara
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Toxicology. Poisons ,RA1190-1270 ,Industrial hygiene. Industrial welfare ,HD7260-7780.8 - Abstract
Abstract Background Translocation of nanoparticles (NP) from the pulmonary airways into other pulmonary compartments or the systemic circulation is controversially discussed in the literature. In a previous study it was shown that titanium dioxide (TiO2) NP were "distributed in four lung compartments (air-filled spaces, epithelium/endothelium, connective tissue, capillary lumen) in correlation with compartment size". It was concluded that particles can move freely between these tissue compartments. To analyze whether the distribution of TiO2 NP in the lungs is really random or shows a preferential targeting we applied a newly developed method for comparing NP distributions. Methods Rat lungs exposed to an aerosol containing TiO2 NP were prepared for light and electron microscopy at 1 h and at 24 h after exposure. Numbers of TiO2 NP associated with each compartment were counted using energy filtering transmission electron microscopy. Compartment size was estimated by unbiased stereology from systematically sampled light micrographs. Numbers of particles were related to compartment size using a relative deposition index and chi-squared analysis. Results Nanoparticle distribution within the four compartments was not random at 1 h or at 24 h after exposure. At 1 h the connective tissue was the preferential target of the particles. At 24 h the NP were preferentially located in the capillary lumen. Conclusion We conclude that TiO2 NP do not move freely between pulmonary tissue compartments, although they can pass from one compartment to another with relative ease. The residence time of NP in each tissue compartment of the respiratory system depends on the compartment and the time after exposure. It is suggested that a small fraction of TiO2 NP are rapidly transported from the airway lumen to the connective tissue and subsequently released into the systemic circulation.
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- 2007
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37. Translocation and potential neurological effects of fine and ultrafine particles a critical update
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Geiser Marianne, Chen Lung, Gehr Peter, Calderón-Garcidueñas Lilian, Veronesi Bellina, Peters Annette, Reed William, Rothen-Rutishauser Barbara, Schürch Samuel, and Schulz Holger
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Toxicology. Poisons ,RA1190-1270 ,Industrial hygiene. Industrial welfare ,HD7260-7780.8 - Abstract
Abstract Particulate air pollution has been associated with respiratory and cardiovascular disease. Evidence for cardiovascular and neurodegenerative effects of ambient particles was reviewed as part of a workshop. The purpose of this critical update is to summarize the evidence presented for the mechanisms involved in the translocation of particles from the lung to other organs and to highlight the potential of particles to cause neurodegenerative effects. Fine and ultrafine particles, after deposition on the surfactant film at the air-liquid interface, are displaced by surface forces exerted on them by surfactant film and may then interact with primary target cells upon this displacement. Ultrafine and fine particles can then penetrate through the different tissue compartments of the lungs and eventually reach the capillaries and circulating cells or constituents, e.g. erythrocytes. These particles are then translocated by the circulation to other organs including the liver, the spleen, the kidneys, the heart and the brain, where they may be deposited. It remains to be shown by which mechanisms ultrafine particles penetrate through pulmonary tissue and enter capillaries. In addition to translocation of ultrafine particles through the tissue, fine and coarse particles may be phagocytized by macrophages and dendritic cells which may carry the particles to lymph nodes in the lung or to those closely associated with the lungs. There is the potential for neurodegenerative consequence of particle entry to the brain. Histological evidence of neurodegeneration has been reported in both canine and human brains exposed to high ambient PM levels, suggesting the potential for neurotoxic consequences of PM-CNS entry. PM mediated damage may be caused by the oxidative stress pathway. Thus, oxidative stress due to nutrition, age, genetics among others may increase the susceptibility for neurodegenerative diseases. The relationship between PM exposure and CNS degeneration can also be detected under controlled experimental conditions. Transgenic mice (Apo E -/-), known to have high base line levels of oxidative stress, were exposed by inhalation to well characterized, concentrated ambient air pollution. Morphometric analysis of the CNS indicated unequivocally that the brain is a critical target for PM exposure and implicated oxidative stress as a predisposing factor that links PM exposure and susceptibility to neurodegeneration. Together, these data present evidence for potential translocation of ambient particles on organs distant from the lung and the neurodegenerative consequences of exposure to air pollutants.
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- 2006
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38. The fading of reported effectiveness. A meta-analysis of randomised controlled trials
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Weiss Christel, Gehr Bernhard T, and Porzsolt Franz
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Medicine (General) ,R5-920 - Abstract
Abstract Background The "real" effect size of a medical therapy is constant over time. In contrast, the effect size reported in randomised controlled trials (RCTs) may change over time because the sum of all kinds of bias influencing the reported effectiveness is not necessarily constant. As this would affect the validity of meta-analyses, we tested the hypothesis that the reported effect size decreases over time. Furthermore, we tested three hypotheses that would explain a possible change. Methods Because of well established outcome measures, the lipid-lowering drugs Pravastatin and Atorvastatin (serum low-density lipoprotein cholesterol, LDL-C) and the anti-glaucoma drugs Timolol and Latanoprost (intraocular pressure, IOP) were chosen for this investigation. Studies were identified by a standardized MEDLINE search. RCTs investigating the above identified medications administered as monotherapy, and in defined dosages, were included. Publication year, baseline (= pre-treatment value in the treatment group of interest) and post intervention means, number of patients and the assignment to experimental or control group were extracted for each study. Results A total of 625 citations were screened; 206 met the inclusion criteria. The reported effect size of Pravastatin (change of reported effect size in five years: -3.22% LDL-C, P < .0001), Timolol (-0.56 mmHg, P < .0001) and Latanoprost (-1.78 mmHg, P = .0074) decreased over time, while there was no significant change for Atorvastatin (+0.31% LDL-C, P = .8618). Multiple regression analysis showed that baseline values were the most important influencing factor; study size or treatment group did not play a significant role. Conclusion The effectiveness of medical therapies reported in RCTs decreases over time in three of the four investigated pharmaceuticals, caused mainly by baseline differences. We call this phenomenon "fading of reported effectiveness". Under this condition the validity of a meta-analysis may be impaired. Therefore we propose to observe this phenomenon in future meta-analyses in order to guarantee a maximum of transparency.
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- 2006
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39. A hypothesis-generating study to evaluate platelet activity in diabetics with chronic kidney disease
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Martin rika J, Brophy Donald F, Gehr Todd WB, and Carr Marcus E
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diabetes ,thrombin generation ,platelet function ,renal dysfunction ,Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Abstract Background It is well described that diabetes mellitus is a hypercoagulable state. It is also known that patients with renal dysfunction have impaired platelet aggregation and function. It is not well described how renal dysfunction affects the hypercoagulability associated with diabetes. This post-hoc sub-group analysis compares platelet function, clot structure and thrombin generation time at baseline, and following enoxaparin exposure in three groups of subjects. Methods 30 total subjects were evaluated in the three groups: Group I: normal controls (n = 10), Group II: subjects with renal dysfunction but without diabetes (n = 13), and Group III: subjects with concomitant diabetes and renal dysfunction (n = 7). For each subject, platelet contractile force (PCF), clot elastic modulus (CEM) and thrombin generation time (TGT) were simultaneously measured in whole blood at baseline, and following increasing enoxaparin antifactor Xa activity exposure. The group means for each parameter were determined and compared using one-way analysis of variance, with post-hoc Tukey-Kramer test. Results At baseline, subjects in Group III (diabetics with concomitant renal dysfunction) display significantly enhanced platelet activity, as measured by PCF (p = 0.003) and CEM (p = 0.03), relative to the non-diabetic Groups I and II. Subjects in Group II (renal dysfunction without diabetes) had significantly prolonged TGT values relative to controls when the antifactor Xa activity concentration reached 0.5 (p = 0.007), 1.0 (p = 0.005) and 3.0 IU/mL (p < 0.0001), respectively. There were no differences between Group II and Group III with respect to TGT at these antifactor Xa activity concentrations. When the antifactor Xa activity concentration reached 3.0 IU/mL, Groups II and III formed significantly less rigid blood clots (CEM p = 0.003) and also trended toward reduced PCF (p = 0.06) relative to Group I. Conclusion This hypothesis-generating sub-group analysis suggests that at baseline, patients with concomitant diabetes and renal dysfunction have significantly enhanced platelet activity (PCF), and form more rigid blood clots (CEM) compared to controls and subjects with renal dysfunction but no diabetes. This may suggest that the presence of renal dysfunction does not ameliorate the hypercoagulable state associated with diabetes. Secondly, it appears that subjects with renal dysfunction but without diabetes have an enhanced response to enoxaparin relative to controls.
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- 2005
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40. Improvement of dicarboxylic acid production with Methylorubrum extorquens by reduction of product reuptake
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Pöschel, Laura, Gehr, Elisabeth, and Buchhaupt, Markus
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- 2022
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41. Cardiotoxicity among socioeconomically marginalized breast cancer patients
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Lu, Yan, Gehr, Aaron W., Anikpo, Ifedioranma, Meadows, Rachel J., Craten, Kevin J., Narra, Kalyani, Lingam, Anuradha, Kamath, Sandeep, Tanna, Bhavna, Ghabach, Bassam, and Ojha, Rohit P.
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- 2022
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42. Diseases of the Kidney
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Baumgarten, Margaret, Gehr, Todd W. B., Kothari, Niraj R., Carl, Daniel, Paulman, Paul M., editor, Taylor, Robert B., editor, Paulman, Audrey A., editor, and Nasir, Laeth S., editor
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- 2022
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43. Impaired autophagic flux and dedifferentiation in podocytes lacking Asah1 gene: Role of lysosomal TRPML1 channel
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Li, Guangbi, Huang, Dandan, Zou, Yao, Kidd, Jason, Gehr, Todd W.B., Li, Ningjun, Ritter, Joseph K., and Li, Pin-Lan
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- 2023
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44. So vermeiden Sie Hypoglykämien
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Gehr, Bernhard
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- 2022
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45. Glukosemessung und -kontrolle bei Patienten mit Typ-1- oder Typ-2-Diabetes
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Schlüter, Sandra, Deiss, Dorothee, Gehr, Bernhard, Lange, Karin, von Sengbusch, Simone, Thomas, Andreas, Ziegler, Ralph, and Freckmann, Guido
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- 2022
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46. Day versus night use of forest by red and roe deer as determined by Corine Land Cover and Copernicus Tree Cover Density: assessing use of geographic layers in movement ecology
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Salvatori, M., De Groeve, J., van Loon, E., De Baets, B., Morellet, N., Focardi, S., Bonnot, N. C., Gehr, B., Griggio, M., Heurich, M., Kroeschel, M., Licoppe, A., Moorcroft, P., Pedrotti, L., Signer, J., Van de Weghe, N., and Cagnacci, F.
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- 2022
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47. Wunden verringern die Lebensqualität
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Gehr, Thomas Johann, Freiberger, Ellen, and Lamotte, Sylvie
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- 2022
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48. High-density electrode recordings reveal strong and specific connections between retinal ganglion cells and midbrain neurons
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Sibille, Jérémie, Gehr, Carolin, Benichov, Jonathan I., Balasubramanian, Hymavathy, Teh, Kai Lun, Lupashina, Tatiana, Vallentin, Daniela, and Kremkow, Jens
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- 2022
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49. Timing of adjuvant chemotherapy initiation and mortality among colon cancer patients at a safety-net health system
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Lu, Yan, Gehr, Aaron W., Meadows, Rachel J., Ghabach, Bassam, Neerukonda, Latha, Narra, Kalyani, and Ojha, Rohit P.
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- 2022
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50. Impact of pH and removed filtrate on E. coli regrowth and microbial community during storage of electro-dewatered biosolids
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Navab-Daneshmand, Tala, Guo, Bing, Gehr, Ronald, and Frigon, Dominic
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- 2022
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