26 results on '"G. Vegas-Sanchez"'
Search Results
2. Volume, Noise and Bias Correction for Gas Trapping: A Mosaic Attenuation Study Case
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G. Vegas-Sanchez-Ferrero and R. San Jose Estepar
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- 2023
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3. Emphysema Progression Quantification with Joint Volume, Noise and Bias (VNB) Deconvolution of Density Histograms
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G. Vegas-Sanchez-Ferrero and R. San Jose Estepar
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- 2022
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4. Relationship Between Protein Biomarkers and Interstitial Feature Progression in Smokers
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S. Ash, T.J. Doyle, B. Choi, N. Adan, R. Harmouche, R.S.J. Estepar, S.M. Humphries, R.K. Putman, G.M. Hunninghake, R. Kalhan, P.A. Reyfman, G.Y.-H. Liu, A.A. Diaz, S. Mason, F.N. Rahaghi, C.L. Pistenmaa, G. Vegas-Sanchez-Ferrero, J. Ross, D.A. Lynch, F.J. Martinez, M.K. Han, R.P. Bowler, T.B. Leonard, D.O. Wilson, R. San Jose Estepar, I.O. Rosas, and G.R. Washko
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- 2021
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5. Risk Factors Associated with the Progression of Interstitial Features and Outcomes in the COPDGene and PLuSS Cohorts
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B. Choi, N. Adan, T.J. Doyle, R. San Jose Estepar, R. Harmouche, S.M. Humphries, R.K. Putman, G.M. Hunninghake, R. Kalhan, P.A. Reyfman, G.Y.-H. Liu, A.A. Diaz, S. Mason, F.N. Rahaghi, C.L. Pistenmaa, G. Vegas-Sanchez-Ferrero, J. Ross, D.A. Lynch, F.J. Martinez, M.K. Han, R.P. Bowler, T.B. Leonard, D.O. Wilson, I.O. Rosas, G.R. Washko, and S. Ash
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- 2021
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6. Impact of a Low-Dose to High-Dose Deep Learning Technique in a Panel of Lung Quantitative Biomarkers
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P. Nardelli, R. San José Estépar, G. Vegas-Sanchez-Ferrero, and R. San Jose Estepar
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- 2021
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7. Fusion of Multiple CT Reconstructions to Improve the Spatial Resolution in CT Scans
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G. Vegas-Sanchez-Ferrero and R. San Jose Estepar
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- 2021
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8. A variationally based weighted re-initialization method for geometric active contours
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Marcos Martín-Fernández, Santiago Aja-Fernández, Maria Teresa Perez, Susana Merino-Caviedes, and G. Vegas-Sanchez
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Level set (data structures) ,Active contour model ,Pixel ,business.industry ,Initialization ,Signed distance function ,Image segmentation ,Position (vector) ,Computer vision ,Artificial intelligence ,business ,Algorithm ,Mathematics ,Energy functional - Abstract
In geometric active contour algorithms, a re-initialization step must be performed by the level set function to remain close to a signed distance function, in order to avoid numerical instabilities. We propose a new re-initialization method that may be employed as a standalone method to recover the signed distance condition, or may be embedded directly into a variational framework as an additional term for the energy functional. Its purpose is to make the pixels near the propagating contour be less affected by the re-initialization. Experimental results show that whereas previous approaches change the position of the zero level set, our method keeps it virtually unchanged.
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- 2010
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9. Erratum for: Quantitative CT Evaluation of Emphysema Progression over 10 Years in the COPDGene Study.
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Baraghoshi D, Strand M, Humphries SM, San José Estépar R, Vegas Sanchez-Ferrero G, Charbonnier JP, Latisenko R, Silverman EK, Crapo JD, and Lynch DA
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- 2023
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10. The Value of Virtual Clinical Trials for the Assessment of the Effect of Acquisition Protocols in Emphysema Quantification.
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Vegas Sanchez-Ferrero G and San José Estépar R
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- Humans, Pulmonary Emphysema diagnosis, Pulmonary Emphysema therapy, Emphysema
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- 2023
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11. Quantitative CT Evaluation of Emphysema Progression over 10 Years in the COPDGene Study.
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Baraghoshi D, Strand M, Humphries SM, San José Estépar R, Vegas Sanchez-Ferrero G, Charbonnier JP, Latisenko R, Silverman EK, Crapo JD, and Lynch DA
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- Humans, Female, Middle Aged, Tomography, X-Ray Computed methods, Longitudinal Studies, Disease Progression, Lung, Pulmonary Emphysema diagnostic imaging, Pulmonary Disease, Chronic Obstructive diagnostic imaging, Emphysema
- Abstract
Background Long-term studies of chronic obstructive pulmonary disease (COPD) can evaluate emphysema progression. Adjustment for differences in equipment and scanning protocols of individual CT examinations have not been studied extensively. Purpose To evaluate emphysema progression in current and former smokers in the COPDGene cohort over three imaging points obtained at 5-year intervals accounting for individual CT parameters. Materials and Methods Current and former cigarette smokers enrolled between 2008 and 2011 from the COPDGene study were prospectively followed for 10 years between 2008 and 2020. Extent of emphysema as adjusted lung density (ALD) from quantitative CT was measured at baseline and at 5- and 10-year follow-up. Linear mixed models adjusted for CT technical characteristics were constructed to evaluate emphysema progression. Mean annual changes in ALD over consecutive 5-year study periods were estimated by smoking status and baseline emphysema. Results Of 8431 participants at baseline (mean age, 60 years ± 9 [SD]; 3905 female participants), 4913 were at 5-year follow-up and 1544 participants were at 10-year follow-up. There were 4134 (49%) participants who were current smokers, and 4449 (53%) participants had more than trace emphysema at baseline. Current smokers with more than trace emphysema showed the largest decline in ALD, with mean annual decreases of 1.4 g/L (95% CI: 1.2, 1.5) in the first 5 years and 0.9 g/L (95% CI: 0.7, 1.2) in the second 5 years. Accounting for CT noise, field of view, and scanner model improved model fit for estimation of emphysema progression ( P < .001 by likelihood ratio test). Conclusion Evaluation at CT of emphysema progression in the COPDGene study showed that, during the span of 10 years, participants with pre-existing emphysema who continued smoking had the largest decline in ALD. Adjusting for CT equipment and protocol factors improved these longitudinal estimates. Clinical trial registration no. NCT00608764 © RSNA, 2023 Supplemental material is available for this article. See the editorial by Parraga and Kirby in this issue.
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- 2023
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12. QUANTITATIVE BIOMARKERS REPRODUCIBILITY USING GENERATIVE ADVERSARIAL APPROACHES IN REDUCED TO CONVENTIONAL DOSE CT.
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Nardelli P, San José Estépar R, Vegas Sanchez-Ferrero G, and San José Estépar R
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In recent years, several techniques for image-to-image translation by means of generative adversarial neural networks (GAN) have been proposed to learn mapping characteristics between a source and a target domain. In particular, in the medical imaging field conditional GAN frameworks with paired samples (cGAN) and unconditional cycle-consistent GANs with unpaired data (CycleGAN) have been demonstrated as a powerful scheme to model non-linear mappings that produce realistic target images from different modality sources. When proposing the usage and adaptation of these frameworks for medical image synthesis, quantitative and qualitative validation are usually performed by assessing the similarity between synthetic and target images in terms of metrics such as mean absolute error (MAE) or structural similarity (SSIM) index. However, an evaluation of clinically relevant markers showing that diagnostic information is not overlooked in the translation process is often missing. In this work, we aim at demonstrating the importance of validating medical image-to-image translation techniques by assessing their effect on the measurement of clinically relevant metrics and biomarkers. We implemented both a conditional and an unconditional approach to synthesize conventional dose chest CT scans from reduced dose CT and show that while both visually and in terms of traditional metrics the network appears to successfully minimize perceptual discrepancies, these methods are not reliable to systematically reproduce quantitative measurements of various chest biomarkers.
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- 2023
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13. Smaller Left Ventricle Size at Noncontrast CT Is Associated with Lower Mortality in COPDGene Participants.
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Washko GR, Nardelli P, Ash SY, Rahaghi FN, Vegas Sanchez-Ferrero G, Come CE, Dransfield MT, Kalhan R, Han MK, Bhatt SP, Wells JM, Pistenmaa CL, Diaz AA, Ross JC, Rennard S, Querejeta Roca G, Shah AM, Young K, Kinney GL, Hokanson JE, Agustí A, and San José Estépar R
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- Aged, Cohort Studies, Female, Humans, Longitudinal Studies, Male, Middle Aged, Prospective Studies, Pulmonary Disease, Chronic Obstructive physiopathology, Sex Factors, Heart Ventricles diagnostic imaging, Heart Ventricles physiopathology, Pulmonary Disease, Chronic Obstructive diagnostic imaging, Pulmonary Disease, Chronic Obstructive mortality, Tomography, X-Ray Computed methods
- Abstract
Background Smokers with chronic obstructive pulmonary disease (COPD) have smaller left ventricles (LVs) due to reduced preload. Skeletal muscle wasting is also common in COPD, but less is known about its contribution to LV size. Purpose To explore the relationships between CT metrics of emphysema, venous vascular volume, and sarcopenia with the LV epicardial volume (LV
EV ) (myocardium and chamber) estimated from chest CT images in participants with COPD and then to determine the clinical relevance of the LVEV in multivariable models, including sex and anthropomorphic metrics. Materials and Methods The COPDGene study (ClinicalTrials.gov identifier: NCT00608764) is an ongoing prospective longitudinal observational investigation that began in 2006. LVEV , distal pulmonary venous blood volume for vessels smaller than 5 mm2 in cross section (BV5), CT emphysema, and pectoralis muscle area were retrospectively extracted from 3318 nongated, unenhanced COPDGene CT scans. Multivariable linear and Cox regression models were used to explore the association between emphysema, venous BV5, pectoralis muscle area, and LVEV as well as the association of LVEV with health status using the St George's Respiratory Questionnaire, 6-minute walk distance, and all-cause mortality. Results The median age of the cohort was 64 years (interquartile range, 57-70 years). Of the 2423 participants, 1806 were men and 617 were African American. The median LVEV between Global Initiative for Chronic Obstructive Lung Disease (GOLD) 1 and GOLD 4 COPD was reduced by 13.9% in women and 17.7% in men ( P < .001 for both). In fully adjusted models, higher emphysema percentage (β = -4.2; 95% confidence interval [CI]: -5.0, -3.4; P < .001), venous BV5 (β = 7.0; 95% CI: 5.7, 8.2; P < .001), and pectoralis muscle area (β = 2.7; 95% CI: 1.2, 4.1; P < .001) were independently associated with reduced LVEV . Reductions in LVEV were associated with improved health status (β = 0.3; 95% CI: 0.1, 0.4) and 6-minute walk distance (β = -12.2; 95% CI: -15.2, -9.3). These effects were greater in women than in men. The effect of reduced LVEV on mortality (hazard ratio: 1.07; 95% CI: 1.05, 1.09) did not vary by sex. Conclusion In women more than men with chronic obstructive pulmonary disease, a reduction in the estimated left ventricle epicardial volume correlated with a loss of pulmonary venous vasculature, greater pectoralis muscle sarcopenia, and lower all-cause mortality. © RSNA, 2020 Online supplemental material is available for this article.- Published
- 2020
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14. Quantification and Significance of Pulmonary Vascular Volume in Predicting Response to Ultrasound-Facilitated, Catheter-Directed Fibrinolysis in Acute Pulmonary Embolism (SEATTLE-3D).
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Rahaghi FN, San José Estépar R, Goldhaber SZ, Minhas JK, Nardelli P, Vegas Sanchez-Ferrero G, De La Bruere I, Hassan SM, Mason S, Ash SY, Come CE, Washko GR, and Piazza G
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- Acute Disease, Angiography, Humans, Pulmonary Embolism diagnosis, Tomography, X-Ray Computed, Cardiac Catheterization methods, Fibrinolytic Agents therapeutic use, Pulmonary Artery diagnostic imaging, Pulmonary Embolism drug therapy, Therapy, Computer-Assisted methods, Thrombolytic Therapy methods, Ultrasonography methods
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- 2019
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15. Arterial Vascular Pruning, Right Ventricular Size, and Clinical Outcomes in Chronic Obstructive Pulmonary Disease. A Longitudinal Observational Study.
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Washko GR, Nardelli P, Ash SY, Vegas Sanchez-Ferrero G, Rahaghi FN, Come CE, Dransfield MT, Kalhan R, Han MK, Bhatt SP, Wells JM, Aaron CP, Diaz AA, Ross JC, Cuttica MJ, Labaki WW, Querejeta Roca G, Shah AM, Young K, Kinney GL, Hokanson JE, Agustí A, and San José Estépar R
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- Aged, Exercise Tolerance, Female, Heart Ventricles diagnostic imaging, Heart Ventricles pathology, Humans, Linear Models, Male, Middle Aged, Mortality, Multivariate Analysis, Organ Size, Proportional Hazards Models, Pulmonary Artery pathology, Pulmonary Disease, Chronic Obstructive complications, Pulmonary Disease, Chronic Obstructive diagnostic imaging, Pulmonary Disease, Chronic Obstructive physiopathology, Pulmonary Emphysema complications, Pulmonary Emphysema physiopathology, Pulmonary Heart Disease etiology, Pulmonary Heart Disease physiopathology, Severity of Illness Index, Tomography, X-Ray Computed, Walk Test, Pulmonary Artery diagnostic imaging, Pulmonary Emphysema diagnostic imaging, Pulmonary Heart Disease diagnostic imaging, Vascular Remodeling
- Abstract
Rationale: Cor pulmonale (right ventricular [RV] dilation) and cor pulmonale parvus (RV shrinkage) are both described in chronic obstructive pulmonary disease (COPD). The identification of emphysema as a shared risk factor suggests that additional disease characterization is needed to understand these widely divergent cardiac processes. Objectives: To explore the relationship between computed tomography measures of emphysema and distal pulmonary arterial morphology with RV volume, and their association with exercise capacity and mortality in ever-smokers with COPD enrolled in the COPDGene Study. Methods: Epicardial (myocardium and chamber) RV volume (RV
EV ), distal pulmonary arterial blood vessel volume (arterial BV5: vessels <5 mm2 in cross-section), and objective measures of emphysema were extracted from 3,506 COPDGene computed tomography scans. Multivariable linear and Cox regression models and the log-rank test were used to explore the association between emphysema, arterial BV5, and RVEV with exercise capacity (6-min-walk distance) and all-cause mortality. Measurements and Main Results: The RVEV was approximately 10% smaller in Global Initiative for Chronic Obstructive Lung Disease stage 4 versus stage 1 COPD ( P < 0.0001). In multivariable modeling, a 10-ml decrease in arterial BV5 (pruning) was associated with a 1-ml increase in RVEV . For a given amount of emphysema, relative preservation of the arterial BV5 was associated with a smaller RVEV . An increased RVEV was associated with reduced 6-minute-walk distance and in those with arterial pruning an increased mortality. Conclusions: Pulmonary arterial pruning is associated with clinically significant increases in RV volume in smokers with COPD and is related to exercise capacity and mortality in COPD.Clinical trial registered with www.clinicaltrials.gov (NCT00608764).- Published
- 2019
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16. NOVIFAST: A Fast Algorithm for Accurate and Precise VFA MRI Mapping.
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Ramos-Llorden G, Vegas-Sanchez-Ferrero G, Bjork M, Vanhevel F, Parizel PM, San Jose Estepar R, den Dekker AJ, and Sijbers J
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- Adult, Brain diagnostic imaging, Humans, Male, Phantoms, Imaging, Algorithms, Image Processing, Computer-Assisted methods, Magnetic Resonance Imaging methods
- Abstract
In quantitative magnetic resonance mapping, the variable flip angle (VFA) steady state spoiled gradient recalled echo (SPGR) imaging technique is popular as it provides a series of high resolution weighted images in a clinically feasible time. Fast, linear methods that estimate maps from these weighted images have been proposed, such as DESPOT1 and iterative re-weighted linear least squares. More accurate, non-linear least squares (NLLS) estimators are in play, but these are generally much slower and require careful initialization. In this paper, we present NOVIFAST, a novel NLLS-based algorithm specifically tailored to VFA SPGR mapping. By exploiting the particular structure of the SPGR model, a computationally efficient, yet accurate and precise map estimator is derived. Simulation and in vivo human brain experiments demonstrate a twenty-fold speed gain of NOVIFAST compared with conventional gradient-based NLLS estimators while maintaining a high precision and accuracy. Moreover, NOVIFAST is eight times faster than the efficient implementations of the variable projection (VARPRO) method. Furthermore, NOVIFAST is shown to be robust against initialization.
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- 2018
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17. Interstitial Features at Chest CT Enhance the Deleterious Effects of Emphysema in the COPDGene Cohort.
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Ash SY, Harmouche R, Ross JC, Diaz AA, Rahaghi FN, Vegas Sanchez-Ferrero G, Putman RK, Hunninghake GM, Onieva Onieva J, Martinez FJ, Choi AM, Bowler RP, Lynch DA, Hatabu H, Bhatt SP, Dransfield MT, Wells JM, Rosas IO, San Jose Estepar R, and Washko GR
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- Aged, Aged, 80 and over, Cohort Studies, Female, Forced Expiratory Volume, Humans, Lung diagnostic imaging, Lung physiopathology, Male, Middle Aged, Pulmonary Disease, Chronic Obstructive complications, Pulmonary Emphysema complications, Retrospective Studies, Severity of Illness Index, Pulmonary Disease, Chronic Obstructive diagnostic imaging, Pulmonary Disease, Chronic Obstructive physiopathology, Pulmonary Emphysema diagnostic imaging, Pulmonary Emphysema physiopathology, Tomography, X-Ray Computed methods
- Abstract
Purpose To determine if interstitial features at chest CT enhance the effect of emphysema on clinical disease severity in smokers without clinical pulmonary fibrosis. Materials and Methods In this retrospective cohort study, an objective CT analysis tool was used to measure interstitial features (reticular changes, honeycombing, centrilobular nodules, linear scar, nodular changes, subpleural lines, and ground-glass opacities) and emphysema in 8266 participants in a study of chronic obstructive pulmonary disease (COPD) called COPDGene (recruited between October 2006 and January 2011). Additive differences in patients with emphysema with interstitial features and in those without interstitial features were analyzed by using t tests, multivariable linear regression, and Kaplan-Meier analysis. Multivariable linear and Cox regression were used to determine if interstitial features modified the effect of continuously measured emphysema on clinical measures of disease severity and mortality. Results Compared with individuals with emphysema alone, those with emphysema and interstitial features had a higher percentage predicted forced expiratory volume in 1 second (absolute difference, 6.4%; P < .001), a lower percentage predicted diffusing capacity of lung for carbon monoxide (DLCO) (absolute difference, 7.4%; P = .034), a 0.019 higher right ventricular-to-left ventricular (RVLV) volume ratio (P = .029), a 43.2-m shorter 6-minute walk distance (6MWD) (P < .001), a 5.9-point higher St George's Respiratory Questionnaire (SGRQ) score (P < .001), and 82% higher mortality (P < .001). In addition, interstitial features modified the effect of emphysema on percentage predicted DLCO, RVLV volume ratio, 6WMD, SGRQ score, and mortality (P for interaction < .05 for all). Conclusion In smokers, the combined presence of interstitial features and emphysema was associated with worse clinical disease severity and higher mortality than was emphysema alone. In addition, interstitial features enhanced the deleterious effects of emphysema on clinical disease severity and mortality., (© RSNA, 2018 Online supplemental material is available for this article.)
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- 2018
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18. Non-Stationary Rician Noise Estimation in Parallel MRI Using a Single Image: A Variance-Stabilizing Approach.
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Pieciak T, Aja-Fernandez S, and Vegas-Sanchez-Ferrero G
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Parallel magnetic resonance imaging (pMRI) techniques have gained a great importance both in research and clinical communities recently since they considerably accelerate the image acquisition process. However, the image reconstruction algorithms needed to correct the subsampling artifacts affect the nature of noise, i.e., it becomes non-stationary. Some methods have been proposed in the literature dealing with the non-stationary noise in pMRI. However, their performance depends on information not usually available such as multiple acquisitions, receiver noise matrices, sensitivity coil profiles, reconstruction coefficients, or even biophysical models of the data. Besides, some methods show an undesirable granular pattern on the estimates as a side effect of local estimation. Finally, some methods make strong assumptions that just hold in the case of high signal-to-noise ratio (SNR), which limits their usability in real scenarios. We propose a new automatic noise estimation technique for non-stationary Rician noise that overcomes the aforementioned drawbacks. Its effectiveness is due to the derivation of a variance-stabilizing transformation designed to deal with any SNR. The method was compared to the main state-of-the-art methods in synthetic and real scenarios. Numerical results confirm the robustness of the method and its better performance for the whole range of SNRs.
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- 2017
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19. Ventricular Geometry From Non-contrast Non-ECG-gated CT Scans: An Imaging Marker of Cardiopulmonary Disease in Smokers.
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Rahaghi FN, Vegas-Sanchez-Ferrero G, Minhas JK, Come CE, De La Bruere I, Wells JM, González G, Bhatt SP, Fenster BE, Diaz AA, Kohli P, Ross JC, Lynch DA, Dransfield MT, Bowler RP, Ledesma-Carbayo MJ, San José Estépar R, and Washko GR
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- Aged, Echocardiography, Electrocardiography, Female, Follow-Up Studies, Heart Diseases etiology, Heart Diseases physiopathology, Heart Ventricles physiopathology, Humans, Lung Diseases etiology, Lung Diseases physiopathology, Magnetic Resonance Imaging, Cine, Male, Middle Aged, Reproducibility of Results, Smoking adverse effects, Stroke Volume, Cardiac Volume physiology, Heart Diseases diagnosis, Heart Ventricles diagnostic imaging, Lung Diseases diagnosis, Smokers, Tomography, X-Ray Computed methods, Ventricular Function physiology
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Rationale and Objectives: Imaging-based assessment of cardiovascular structure and function provides clinically relevant information in smokers. Non-cardiac-gated thoracic computed tomographic (CT) scanning is increasingly leveraged for clinical care and lung cancer screening. We sought to determine if more comprehensive measures of ventricular geometry could be obtained from CT using an atlas-based surface model of the heart., Materials and Methods: Subcohorts of 24 subjects with cardiac magnetic resonance imaging (MRI) and 262 subjects with echocardiography were identified from COPDGene, a longitudinal observational study of smokers. A surface model of the heart was manually initialized, and then automatically optimized to fit the epicardium for each CT. Estimates of right and left ventricular (RV and LV) volume and free-wall curvature were then calculated and compared to structural and functional metrics obtained from MRI and echocardiograms., Results: CT measures of RV dimension and curvature correlated with similar measures obtained using MRI. RV and LV volume obtained from CT inversely correlated with echocardiogram-based estimates of RV systolic pressure using tricuspid regurgitation jet velocity and LV ejection fraction respectively. Patients with evidence of RV or LV dysfunction on echocardiogram had larger RV and LV dimensions on CT. Logistic regression models based on demographics and ventricular measures from CT had an area under the curve of >0.7 for the prediction of elevated right ventricular systolic pressure and ventricular failure., Conclusions: These data suggest that non-cardiac-gated, non-contrast-enhanced thoracic CT scanning may provide insight into cardiac structure and function in smokers., (Copyright © 2017. Published by Elsevier Inc.)
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- 2017
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20. DERIVATION OF A TEST STATISTIC FOR EMPHYSEMA QUANTIFICATION.
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Vegas-Sanchez-Ferrero G, Washko G, Rahaghi FN, Ledesma-Carbayo MJ, and Estépar RS
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Density masking is the de-facto quantitative imaging phenotype for emphysema that is widely used by the clinical community. Density masking defines the burden of emphysema by a fixed threshold, usually between -910 HU and -950 HU, that has been experimentally validated with histology. In this work, we formalized emphysema quantification by means of statistical inference. We show that a non-central Gamma is a good approximation for the local distribution of image intensities for normal and emphysema tissue. We then propose a test statistic in terms of the sample mean of a truncated non-central Gamma random variable. Our results show that this approach is well-suited for the detection of emphysema and superior to standard density masking. The statistical method was tested in a dataset of 1337 samples obtained from 9 different scanner models in subjects with COPD. Results showed an increase of 17% when compared to the density masking approach, and an overall accuracy of 94.09%.
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- 2016
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21. Noise estimation in magnetic resonance SENSE reconstructed data.
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Aja-Fernández S, Vegas-Sanchez-Ferrero G, de Luis-García R, and Tristán-Vega A
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- Humans, Artifacts, Image Processing, Computer-Assisted, Magnetic Resonance Spectroscopy
- Abstract
Parallel imaging methods allow to increase the acquisition rate via subsampled acquisitions of the k-space. SENSE is one of the most popular reconstruction methods proposed in order to suppress the artifacts created by this subsampling. However, the SENSE reconstruction process yields to a variance of noise value which is dependent on the position within the image. Hence, the traditional noise estimation methods based on a single noise level for the whole image fail. Accordingly, we propose a novel method to recover the complete spatial pattern of the variance of noise in SENSE reconstructed images up from the sensitivity maps of each receiver coil. Our method fits applications in statistical image processing tasks such as image denoising.
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- 2013
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22. Robust estimation of MRI myocardial perfusion parameters.
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Aja-Fernández S, Cordero-Grande L, Vegas-Sanchez-Ferrero G, de Luis-García R, and Alberola-López C
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- Algorithms, Contrast Media, Humans, Magnetic Resonance Angiography, Models, Cardiovascular, Phantoms, Imaging, Regional Blood Flow, Coronary Circulation
- Abstract
Myocardial perfusion imaging by first-pass contrast-enhanced magnetic resonance allows to asses the viability of a tissue by the study of the contrast agent transit through the cardiac chambers and myocardium. Since visual inspection is difficult and may left aside critical temporal information, the need of automatic quantitative analysis arises. We propose two robust estimators of the parameters that quantify the perfusion according to a prior pharmacokinetic model. The estimators are based on the concentration of the contrast agent inside the tissue and the blood.
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- 2013
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23. A generalized gamma mixture model for ultrasonic tissue characterization.
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Vegas-Sanchez-Ferrero G, Aja-Fernandez S, Palencia C, and Martin-Fernandez M
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- Algorithms, Computational Biology methods, Computer Simulation, Humans, Likelihood Functions, Reproducibility of Results, Statistical Distributions, Image Processing, Computer-Assisted methods, Models, Statistical, Ultrasonography methods
- Abstract
Several statistical models have been proposed in the literature to describe the behavior of speckles. Among them, the Nakagami distribution has proven to very accurately characterize the speckle behavior in tissues. However, it fails when describing the heavier tails caused by the impulsive response of a speckle. The Generalized Gamma (GG) distribution (which also generalizes the Nakagami distribution) was proposed to overcome these limitations. Despite the advantages of the distribution in terms of goodness of fitting, its main drawback is the lack of a closed-form maximum likelihood (ML) estimates. Thus, the calculation of its parameters becomes difficult and not attractive. In this work, we propose (1) a simple but robust methodology to estimate the ML parameters of GG distributions and (2) a Generalized Gama Mixture Model (GGMM). These mixture models are of great value in ultrasound imaging when the received signal is characterized by a different nature of tissues. We show that a better speckle characterization is achieved when using GG and GGMM rather than other state-of-the-art distributions and mixture models. Results showed the better performance of the GG distribution in characterizing the speckle of blood and myocardial tissue in ultrasonic images.
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- 2012
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24. Soft thresholding for medical image segmentation.
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Aja-Fernandez S, Vegas-Sanchez-Ferrero G, and Martin Fernandez MA
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- Artificial Intelligence, Reproducibility of Results, Sensitivity and Specificity, Algorithms, Brain anatomy & histology, Image Enhancement methods, Image Interpretation, Computer-Assisted methods, Magnetic Resonance Imaging methods, Pattern Recognition, Automated methods
- Abstract
A new soft thresholding method is presented. The method is based on relating each pixel in the image to the different regions via a membership function, rather than through hard decisions. The membership function of each of the regions is derived from the histogram of the image. As a consequence, each pixel will belong to different regions with a different level of membership. This feature is exploited through spatial processing to make the thresholding robust to noisy environments.
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- 2010
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25. Probabilistic-driven oriented Speckle reducing anisotropic diffusion with application to cardiac ultrasonic images.
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Vegas-Sanchez-Ferrero G, Aja-Fernandez S, Martin-Fernandez M, Frangi AF, and Palencia C
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- Anisotropy, Data Interpretation, Statistical, Humans, Reproducibility of Results, Sensitivity and Specificity, Algorithms, Artifacts, Echocardiography methods, Image Enhancement methods, Image Interpretation, Computer-Assisted methods, Pattern Recognition, Automated methods
- Abstract
A novel anisotropic diffusion filter is proposed in this work with application to cardiac ultrasonic images. It includes probabilistic models which describe the probability density function (PDF) of tissues and adapts the diffusion tensor to the image iteratively. For this purpose, a preliminary study is performed in order to select the probability models that best fit the stastitical behavior of each tissue class in cardiac ultrasonic images. Then, the parameters of the diffusion tensor are defined taking into account the statistical properties of the image at each voxel. When the structure tensor of the probability of belonging to each tissue is included in the diffusion tensor definition, a better boundaries estimates can be obtained instead of calculating directly the boundaries from the image. This is the main contribution of this work. Additionally, the proposed method follows the statistical properties of the image in each iteration. This is considered as a second contribution since state-of-the-art methods suppose that noise or statistical properties of the image do not change during the filter process.
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- 2010
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26. Characterization of activity epochs in actimetric registries for infantile colic diagnosis: Identification and feature extraction based on wavelets and symbolic dynamics.
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Martin-Martinez D, Casaseca-de-la-Higuera P, Vegas-Sanchez-Ferrero G, Cordero-Grande L, Andres-de-Llano JM, Garmendia-Leiza JR, and Ardura-Fernandez J
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- Algorithms, Colic physiopathology, Diagnosis, Computer-Assisted, Humans, Infant, Infant, Newborn, Models, Statistical, Prevalence, Sensitivity and Specificity, Software, Time Factors, Actigraphy methods, Colic diagnosis, Signal Processing, Computer-Assisted
- Abstract
The diagnosis and therapy planning of high prevalence pathologies such as infantile colic can be substantially improved by statistical signal processing of activity/rest registries. Assuming that colic episodes are associated to activity episodes, diagnosis aid systems should be based on preprocessing techniques able to separate real activity from rest epochs, and feature extraction methods to identify meaningful indices with diagnostic capabilities. In this paper, we propose a two step diagnosis aid methodology for infantile colic in children below 3 months old. Identification of activity periods is performed by means of a wavelet based activity filter which does not depend on the acquisition device (as so far proposed methods do). In addition, symbolic dynamic analysis is used for extraction of discriminative indices from the activity time series. Results on real data yielded 100% sensitivity and 80% specificity in a study group composed of 46 cases and 10 control subjects.
- Published
- 2010
- Full Text
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