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Tomatoes are essential for human health, and there is an urgent need to increase tomato yield and quality worldwide. Arginine is beneficial to crop storage quality and stress resistance in plants; however, its effects on nitrogen nutrition, tomato production, and quality have not been thoroughly investigated. Thus, this study investigated the influences on tomato growth, yield, and quality by spray arginine. Arginine significantly increased the nitrogen concentration in tomato shoots and fruits, induced by three pathways: assimilate arginine as nitrogen resource; up-regulate SlNRT1.1 expression; increase root development and activity. The photosynthesis was then significantly improved via increased nitrogen levels, further led to enhancement in plant growth, fruit size and yield of tomato. Moreover, arginine treatment positively affected tomato qualities, especially lycopene and vitamin C, by improving nitrogen accumulation. Present results revealed that arginine displayed tremendous potential for increasing tomato production and quality.

Zinc (Zn) deficiency is one of the most common micronutrient disorders in cereal plants, greatly impairing crop productivity and nutritional quality. Identifying the genes associated with Zn deficiency tolerance is the basis for understanding the genetic mechanism conferring tolerance. In this study, the K22×BY815 and DAN340×K22 recombination inbred line (RIL) populations, which were derived from Zn-inefficient and Zn-efficient inbred lines, were utilized to detect the quantitative trait loci (QTLs) associated with Zn deficiency tolerance and to further identify candidate genes within these loci. The BLUP (Best Linear Unbiased Prediction) values under Zn-deficient condition (-Zn) and the ratios of the BLUP values under Zn deficient condition to the BLUP values under Zn-sufficient condition (-Zn/CK) were used to perform linkage mapping. In QTL analysis, 21 QTLs and 33 QTLs controlling the Zn score, plant height, shoot and root dry weight, and root-to-shoot ratio were detected in the K22×BY815 population and the DAN340×K22 population, explaining 5.5-16.6% and 4.2-23.3% of phenotypic variation, respectively. In addition, seventeen candidate genes associated with the mechanisms underlying Zn deficiency tolerance were identified in QTL colocalizations or the single loci, including the genes involved in the uptake, transport, and redistribution of Zn (

Zinc (Zn) deficiency, a globally predominant micronutrient disorder in crops and humans, reduces crop yields and adversely impacts human health. Despite numerous studies on the physiological mechanisms underlying Zn deficiency tolerance, its genetic basis of molecular mechanism is still poorly understood. Thus, the Zn efficiency of 20 maize inbred lines was evaluated, and a quantitative trait locus (QTL) analysis was performed in the recombination inbred line population derived from the most Zn-efficient (Ye478) and Zn-inefficient inbred line (Wu312) to identify the candidate genes associated with Zn deficiency tolerance. On this basis, we analyzed the expression of ZmZIP1-ZmZIP8. Thirteen QTLs for the traits associated with Zn deficiency tolerance were detected, explaining 7.6–63.5% of the phenotypic variation. The genes responsible for Zn uptake and transport across membranes (ZmZIP3, ZmHMA3, ZmHMA4) were identified, which probably form a sophisticated network to regulate the uptake, translocation, and redistribution of Zn. Additionally, we identified the genes involved in the indole-3-acetic acid (IAA) biosynthesis (ZmIGPS) and auxin-dependent gene regulation (ZmIAA). Notably, a high upregulation of ZmZIP3 was found in the Zn-deficient root of Ye478, but not in that of Wu312. Additionally, ZmZIP4, ZmZIP5, and ZmZIP7 were up-regulated in the Zn-deficient roots of Ye478 and Wu312. Our findings provide a new insight into the genetic basis of Zn deficiency tolerance.

Iron (Fe) is a limiting factor in crop growth and nutritional quality because of its low solubility. However, the current understanding of how major crops respond to Fe deficiency and the genetic basis remains limited. In the present study, Fe-efficient inbred line Ye478 and Fe-inefficient inbred line Wu312 and their recombinant inbred line (RIL) population were utilized to reveal the physiological and genetic responses of maize to low Fe stress. Compared with the Fe-sufficient conditions (+Fe: 200 μM), Fe-deficient supply (−Fe: 30 μM) significantly reduced shoot and root dry weights, leaf SPAD of Fe-efficient inbred line Ye478 by 31.4, 31.8, and 46.0%, respectively; decreased Fe-inefficient inbred line Wu312 by 72.0, 45.1, and 84.1%, respectively. Under Fe deficiency, compared with the supply of calcium nitrate (N1), supplying ammonium nitrate (N2) significantly increased the shoot and root dry weights of Wu312 by 37.5 and 51.6%, respectively; and enhanced Ye478 by 23.9 and 45.1%, respectively. Compared with N1, N2 resulted in a 70.0% decrease of the root Fe concentration for Wu312 in the −Fe treatment, N2 treatment reduced the root Fe concentration of Ye478 by 55.8% in the −Fe treatment. These findings indicated that, compared with only supplying nitrate nitrogen, combined supply of ammonium nitrogen and nitrate nitrogen not only contributed to better growth in maize but also significantly reduced Fe concentration in roots. In linkage analysis, ten quantitative trait loci (QTLs) associated with Fe deficiency tolerance were detected, explaining 6.2–12.0% of phenotypic variation. Candidate genes considered to be associated with the mechanisms underlying Fe deficiency tolerance were identified within a single locus or QTL co-localization, including ZmYS3, ZmPYE, ZmEIL3, ZmMYB153, ZmILR3 and ZmNAS4, which may form a sophisticated network to regulate the uptake, transport and redistribution of Fe. Furthermore, ZmYS3 was highly induced by Fe deficiency in the roots; ZmPYE and ZmEIL3, which may be involved in Fe homeostasis in strategy I plants, were significantly upregulated in the shoots and roots under low Fe stress; ZmMYB153 was Fe-deficiency inducible in the shoots. Our findings will provide a comprehensive insight into the physiological and genetic basis of Fe deficiency tolerance.

All over the world, a common problem in the soil is the low content of available zinc (Zn), which is unevenly distributed and difficult to move. However, information on the foraging strategies of roots in response to heterogeneous Zn supply is still very limited. Few studies have analyzed the adaptability of maize inbred lines with different Zn efficiencies to different low Zn stress time lengths in maize. This study analyzed the effects of different time lengths of low Zn stress on various related traits in different inbred lines. In addition, morphological plasticity of roots and the response of Zn-related important gene iron-regulated transporter-like proteins (ZIPs) were studied via simulating the heterogeneity of Zn nutrition in the soil. In this report, when Zn deficiency stress duration was extended (from 14 to 21 days), under Zn-deficient supply (0.5 μM), Zn efficiency (ZE) based on shoot dry weight of Wu312 displayed no significant difference, and ZE for Ye478 was increased by 92.9%. Under longer-term Zn deficiency, shoot, and root dry weights of Ye478 were 6.5 and 2.1-fold higher than those of Wu312, respectively. Uneven Zn supply strongly inhibited the development of some root traits in the -Zn region. Difference in shoot dry weights between Wu312 and Ye478 was larger in T1 (1.97 times) than in T2 (1.53 times). Under heterogeneous condition of Zn supply, both the –Zn region and the +Zn region upregulated the expressions of ZmZIP3, ZmZIP4, ZmZIP5, ZmZIP7, and ZmZIP8 in the roots of two inbred lines. These results indicate that extended time length of low-Zn stress will enlarge the difference of multiple physiological traits, especially biomass, between Zn-sensitive and Zn-tolerant inbred lines. There were significant genotypic differences of root morphology in response to heterogeneous Zn supply. Compared with split-supply with +Zn/+Zn, the difference of above-ground biomass between Zn-sensitive and Zn-tolerant inbred lines under split-supply with –Zn/+Zn was higher. Under the condition of heterogeneous Zn supply, several ZmZIP genes may play important roles in tolerance to low Zn stress, which can provide a basis for further functional characterization.

In North China, the high-quality pear cultivar “Huangguan” (Pyrus bretschneideri Rehd. cv), which is grafted onto dwarf quince A (Cydonia oblonga Mill. cv) rootstock and grown in calcareous soil, experiences severe iron (Fe) deficiency, this deficiency greatly constrains tree growth as well as fruit yield and quality. Therefore, we evaluated the effects of six practices for alleviating chlorosis caused by Fe deficiency in “Huangguan” grafted onto quince A (HG-QA). The practices included ridging with landscape fabric mulching as a control, flattening with landscape fabric mulching (FM), ridging without landscape fabric mulching (R), flattening without landscape fabric mulching (F), Fe fertilizer application in soil (SFe), foliar Fe application (FFe), and manure application (M). The results showed that the leaf Fe concentration increased by 356% under FFe, compared to that under the control, but the practice failed to alleviate Fe deficiency chlorosis. In contrast, an increase in leaf Fe concentration and chlorosis alleviation were observed under F. F alleviated chlorosis mainly by increasing the root ferric-chelate reductase activity. These results indicate that Fe uptake and utilization in leaves are independent biochemical processes and soil aeration improvement have positive effect on increasing Fe uptake. M improved both the soil active Fe concentration and leaf Fe utilization. Thus, manure application should be the first choice for alleviating Fe deficiency chlorosis in HG-QA grown in calcareous soils. Combining manure application with other practices that increase Fe uptake would likely be an effective way to address the problem of Fe deficiency chlorosis.

Tomatoes are important for human health, and there is an urgent need to increase tomato yield and quality worldwide. Arginine is proven to be beneficial for crop storage quality and stress resistance in plants; however, its effects on tomato production and quality have not been fully investigated. This study demonstrated the effects of spray application of arginine on tomato growth, yield, and quality. Arginine treatment significantly increased the nitrogen concentration in the aboveground tomato plant parts and fruit, net photosynthetic rate, stem diameter, dry mass weight, and root activity. It is suggested that increased nitrogen accumulation following arginine application is mainly due to arginine uptake as organic nitrogen, higher expression of the LeNRT1.1 gene, and increased root activity. The increased nitrogen levels improved photosynthesis and promoted tomato plant growth. Moreover, foliar arginine application enhanced fruit size, weight, and yield. Arginine treatment had a positive effect on tomato quality as indicated by the concentrations of lycopene, vitamin C, soluble solid, soluble sugar, and titratable acids, and the sugar-acid ratio. Arginine application has potential to improve tomato production by regulating plant development and enhancing fruit yield and quality.

Zinc (Zn) deficiency is one of the most common micronutrient disorders in cereal plants, greatly impairing crop productivity and nutritional quality. Identifying the genes associated with Zn deficiency tolerance is the basis for understanding the genetic mechanism conferring tolerance. In this study, the K22×BY815 and DAN340×K22 recombination inbred line (RIL) populations, which were derived from Zn-inefficient and Zn-efficient inbred lines, were utilized to detect the quantitative trait loci (QTLs) associated with Zn deficiency tolerance and to further identify candidate genes within these loci. The BLUP (Best Linear Unbiased Prediction) values under Zn-deficient condition (-Zn) and the ratios of the BLUP values under Zn deficient condition to the BLUP values under Zn-sufficient condition (-Zn/CK) were used to perform linkage mapping. In QTL analysis, 21 QTLs and 33 QTLs controlling the Zn score, plant height, shoot and root dry weight, and root-to-shoot ratio were detected in the K22×BY815 population and the DAN340×K22 population, explaining 5.5–16.6% and 4.2–23.3% of phenotypic variation, respectively. In addition, seventeen candidate genes associated with the mechanisms underlying Zn deficiency tolerance were identified in QTL colocalizations or the single loci, including the genes involved in the uptake, transport, and redistribution of Zn (ZmIRT1, ZmHMAs, ZmNRAMP6, ZmVIT, ZmNAS3, ZmDMAS1, ZmTOM3), and the genes participating in the auxin and ethylene signal pathways (ZmAFBs, ZmIAA17, ZmETR, ZmEIN2, ZmEIN3, ZmCTR3, ZmEBF1). Our findings will broaden the understanding of the genetic structure of the tolerance to Zn deficiency in maize.

Background Zn is essential for plants and Zn deficiency leads to great reduction in quality and quantity of crops. Maize, as one of the most important main staple crops worldwide, is more susceptible to Zn deficiency than any other cereal crops. Therefore, understanding the functional mechanisms in tolerance to Zn deficiency in maize is urgent but is still lacking. In this study, quantitative trait loci (QTL) analysis in K22 and By815 RIL population with high-density bin map was conducted to investigate genetic basis of the mechanisms in maize to tolerate Zn deficiency, subsequently some candidate genes were identified and considered as being associated with Zn metabolisms in plants. Results 21 QTLs were detected and accounted for 5.9% - 16.6% of phenotypic variations. Based on the co-localization in this study and the comparisons with previous studies in different RIL and GWAS populations, 223 candidate genes were identified inside the reduced QTL peak intervals on chromosome 1, 2, 6, 7 and 9. Furthermore, 9 genes detected within the peak bins of valuable genomic regions are suggested to be associated with ions transportation and some redox processes affected by Zn deficiency. Additionally, 5 genes, including ZmIRT1, ZmNRAMP6, ZmEIN2 and ZmHMAs, whose homologous gene have been studied and considered to be responsible for metal cations transportation and ethylene-signaling pathway requiring a transition metal were discovered in 5 loci we mapped. Conclusions 14 target genes identified in 9 loci we mapped in this work were explored to elucidate the potential functions in Zn homeostasis and the direct or indirect effects on mechanisms in Zn deficiency tolerance in maize. It is the first time that ZmIRT1, ZmNRAMP6, ZmHMAs were identified using linkage analysis under Zn deficiency in maize, providing genetic evidence and foundation for further gene functional characterization. Our findings have assisted us untangling the genetic basis of possible mechanisms in response to Zn deficiency in maize.

One of the important questions in space biology is the mechanisms underlying plant responses to an outer space environment, i.e., how gene expression is altered in space. In this study, the transcriptome of Arabidopsis thaliana seedlings was analyzed as a part of Germany SIMBOX (science in microgravity box) spaceflight experiment on Shenzhou 8 spacecraft. This experiment involved the following treatments: spaceflight with microgravity (F♣µg), spaceflight with 1g centrifugal force (F 1g), and ground 1g control (G 1g). Gene chips were used to screen gene expression differences in Arabidopsis thaliana seedlings among these treatments. Microarray analysis revealed that 62 1♣g enes were differentially expressed in samples F♣µg vs. G 1g, 249 genes in samples F 1g vs. G 1g, and 368 genes in samples F♣µg vs. F 1g. Gene ontology analysis indicated that the genes were involved in metabolism of stress response, gravitropic response, and DNA damage and repair, suggesting that plants adjust these metabolic pathways to space environmental stress, microgravity, and radiation.

Quince (Cydonia oblonga Mill.) represents an examplar rootstock in modern training programmes to escalate pear production worldwide because of its dwarfing characteristic and precocity. However, iron deficiency often poses a hard hurdle to overcome for developing quince grafted pears in calcareous and alkaline soils. In North China, we observed that the high-quality pear cultivar Huangguan (Pynus bretschneideri Rehd.) grafted onto quince A (Hardy as interstock, defined as HG-QA) suffered iron deficiency chlorosis in calcareous soils in early spring, even more severe during late spring to early summer. In contrast, Huangguan grafted onto Pyrus betulifolia (Hardy as interstock, defined as HG-PB) did not suffer it. We were inspired to design this field experiment to figure out iron mobilization/uptake in the two rootstocks and the two scion-rootstock combinations. Our results showed that the soil plant analysis development (SPAD) values of quince A (24.7) and HG-QA (13.7) were much lower than that of Pyrus betulifolia (41.6) and HG-PB (36.1). The root length density and surface area density of quince A and HG-QA were more than 2-fold higher than those of Pyrus betulifolia and HG-PB. The rhizosphere pH of quince A and HG-QA was more than 0.20 units lower than that of Pyrus betulifolia and HG-PB respectively, whereas we didn’t detect any obvious differences in the root ferric-chelate reductase activity, iron concentrations in leaves and roots, and iron transport ratio. These results strongly suggest that the iron efficiency of HG-PB is attributed to an iron activation mechanism in leaves. The deciphering of the mechanisms that how rootstock influences the iron acquisition system inside the leaf of the scion and changes the efficiency of iron utilization will facilitate making effective solutions for iron deficiency induced chlorosis, popularizing and planting Huangguan grafted onto quince A in pear production.

Iron homeostasis is essential for plant growth and development. Here, we report that a mutation in GENERAL CONTROL NONREPRESSED PROTEIN5 (GCN5) impaired iron translocation from the root to the shoot in Arabidopsis (Arabidopsis thaliana). Illumina high-throughput sequencing revealed 879 GCN5-regulated candidate genes potentially involved in iron homeostasis. Chromatin immunoprecipitation assays indicated that five genes (At3G08040, At2G01530, At2G39380, At2G47160, and At4G05200) are direct targets of GCN5 in iron homeostasis regulation. Notably, GCN5-mediated acetylation of histone 3 lysine 9 and histone 3 lysine 14 of FERRIC REDUCTASE DEFECTIVE3 (FRD3) determined the dynamic expression of FRD3. Consistent with the function of FRD3 as a citrate efflux protein, the iron retention defect in gcn5 was rescued and fertility was partly restored by overexpressing FRD3. Moreover, iron retention in gcn5 roots was significantly reduced by the exogenous application of citrate. Collectively, these data suggest that GCN5 plays a critical role in FRD3-mediated iron homeostasis. Our results provide novel insight into the chromatin-based regulation of iron homeostasis in Arabidopsis.

Apart from a role in cell wall structure, specific functions for boron (B) in plants are unclear; hence, responses and adaptations to B stress are incompletely understood. We tested hypotheses that net photosynthesis (Pn) decreases with B deficiency before visible foliar symptoms and that higher nonphotoinhibitory light levels enhance soluble carbohydrate status and therefore mitigate B deficiency. Geranium (Pelargonium ×hortorum L.H. Bailey cv. Nittany Lion Red) plants were grown hydroponically and were then exposed to normal (45 μm) or deficient (0 μm) B at two light levels [100 or 300 μmol·m−2·s−1 photosynthetically active radiation (PAR)]. Photosynthesis [net CO2 uptake, carboxylation, and photosystem II (PSII) efficiency] was monitored for 5 days, as were concentrations of B, chlorophyll, soluble sugars, total protein, and several photosynthetic and stress proteins [ribulose 1,5-bisphospate carboxylase oxygenase (rubisco), rubisco activase, oxygen-evolving complex-23 (OEC23), Cu/Zn-superoxide dismutase (SOD), Mn-SOD, and eukaryotic translation initiation factor 5A-2 (eIF5A-2)]. Biomass and sugar concentration were greater in high light, and mass was decreased by B deficiency only in leaves in high light. Boron deficiency decreased [B] in all tissues, especially in new leaves. Carboxylation efficiency and Pn decreased within 1 day of B deficiency in low light, but not until 5 days in high light. Chlorophyll concentration decreased, and Mn-SOD increased transiently, with B deficiency in both light levels, but no other effects of low B were observed. Protection of Pn by higher light was confirmed in a different cultivar (Maverick White) grown at 100, 300, and 500 μmol·m−2·s−1 PAR. Thus, in geranium, photosynthesis is affected by B deficiency before effects on leaf growth, and higher light can at least temporarily ameliorate B deficiency, perhaps partly due to enhanced carbohydrate status.

Iron (Fe) deficiency is a difficult nutrient problem particularly in crop plants grown on calcareous soils. Recently, phytosiderophore (PS) release has been linked to the ability of graminaceous species and genotypes to withstand Fe-deficiency chlorosis. So enhancing PS release is a critical step to improve iron efficiency of plants grown on iron stressed soils. The effects of alien cytoplasm on PS release in spring wheat were studied by analyzing PS release from twenty wheat genotypes, including two spring wheat 881 and 352-35, and their 18 alloplasmic lines with the participation of cytoplasms from the Aegilops and Triticum species. Different genotypes were grown in iron sufficient and deficient nutrient solution under controlled environmental conditions. PS release rates were determined at two or three days intervals after onset of iron deficiency symptoms by the measurement of iron mobilizing capacity of root exudates from freshly precipitated FeIII hydroxide. High amounts of phytosiderophores were released from roots of all wheat genotypes without iron supplied, and the amount progressively increased with the development of iron deficiency chlorosis. The results revealed that (1) the release rate of phytosiderophores from roots of common wheat could be considerably influenced by alien cytoplasms. Some alien cytoplasms exerted positive effects, some ones did negative effects, and the other ones had no significant effects. (2) the same alien cytoplasm could affect similarly or oppositely the phytosiderophores release from different wheat. (3) some alien cytoplasms, such as Chinese Spring, Ae. speltoides Tausch and Ae. cylindrica Host showed promising and potential in improving the rate of phytosiderophore release in common wheat. These cytoplasms which showed the desired effect should be given priority in interspecific and intergeneric hybridization to develop and reconstruct the needed wheat cultivars.