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The use of non-pollen palynomorphs (NPP), particularly fossil fungi and algae, as palaeobiological proxies for Late Cretaceous palaeoenvironmental and palaeoclimatic reconstructions of warm-to-hot greenhouse conditions, can enhance our understanding of climate change impacts on modern Patagonian environments. This study aimed to reconstruct the Maastrichtian palaeoenvironment and palaeoclimate in the Cañadón Asfalto Basin (CAB, Chubut Province) by testing these NPPs as proxies using the Nearest Living Relative method (NLR). Moreover, using modern ecological requirements from open-source databases, such as GBIF and processing it with an open-source, cross-platform tool like QGIS, linked with Köppen-Geiger shapefiles, provided evidence of climate-driven palaeo-distribution patterns of fungal and algal diversity at CAB. Applying modern ecological requirements and biogeographic distribution data, we reconstructed the palaeoclimate as temperate with evenly distributed precipitation and warm summers, corresponding to the Cfb climate zone in Köppen-Geiger classifications. Additionally, our methodology produced reliable results regarding Cenozoic floras’ physiognomies based on fossil fungi, revealing a transition from sparsely wooded areas with palms and prairies to complex forest ecosystems with palms, deciduous trees, and shrubland. Furthermore, testing Cretaceous algae with the NLR method, for the first time, provided comprehensive insights into past water body characteristics, including trophic state and water quality. [ABSTRACT FROM AUTHOR]

Matter and energy fluxes and ecosystem services in streams rely on fungi associated with leaf litter. However, the species diversity of this microbial group may differ between a protected area and its surroundings. Thus, to understand how beta diversity may depend on the conservation status of an area, we aimed to evaluate the structure and diversity (α, β, and γ) of the aquatic fungal community from a subtropical area and how it is distributed in streams from a protected area and from a farmland area. Hence, we compared eight streams inside with eight streams outside of a protected area. This is one of the first studies testing the biotic homogenisation hypothesis for fungi associated with leaf litter in streams. We found new records of fungal species from a global biodiversity hotspot. The gamma diversity of aquatic fungi was surprisingly high. Our analyses indicated a process of environmental homogenisation of streams outside the national park. Intriguingly, neither α nor β diversity differed between areas. Environmental variables presented large differences, especially regarding nutrients, which influence the aquatic fungal community. Altogether, this national park seems to be effective in protecting the environmental heterogeneity of streams to some extent; however, the national park was likely suffering from pollution, which requires further investigation. [ABSTRACT FROM AUTHOR]

Climate warming is causing widespread deglaciation and pioneer soil formation over glacial deposits. Melting glaciers expose rocky terrain and glacial till sediment that is relatively low in biomass, oligotrophic, and depleted in nutrients. Following initial colonization by microorganisms, glacial till sediments accumulate organic carbon and nutrients over time. However, the mechanisms driving soil nutrient stabilization during early pedogenesis after glacial retreat remain unclear. Here, we traced amino acid uptake by microorganisms in recently deglaciated high-Arctic soils and show that fungi play a critical role in the initial stabilization of the assimilated carbon. Pioneer basidiomycete yeasts were among the predominant taxa responsible for carbon assimilation, which were associated with overall high amino acid use efficiency and reduced respiration. In intermediate-and late-stage soils, lichenized ascomycete fungi were prevalent, but bacteria increasingly dominated amino acid assimilation, with substantially decreased fungal:bacterial amino acid assimilation ratios and increased respiration. Together, these findings demonstrate that fungi are important drivers of pedogenesis in high-Arctic ecosystems that are currently subject to widespread deglaciation from global warming. [ABSTRACT FROM AUTHOR]

The ascomycete fungus Aspergillus flavus infects and contaminates corn, peanuts, cottonseed, and tree nuts with toxic and carcinogenic aflatoxins. Subdivision between soil and host plant populations suggests that certain A. flavus strains are specialized to infect peanut, cotton, and corn despite having a broad host range. In this study, the ability of strains isolated from corn and/or soil in 11 Louisiana fields to produce conidia (field inoculum and male gamete) and sclerotia (resting bodies and female gamete) was assessed and compared with genotypic single-nucleotide polymorphism (SNP) differences between whole genomes. Corn strains produced upward of 47× more conidia than strains restricted to soil. Conversely, corn strains produced as much as 3000× fewer sclerotia than soil strains. Aspergillus flavus strains, typified by sclerotium diameter (small S-strains, <400 μm; large L-strains, >400 μm), belonged to separate clades. Several strains produced a mixture (M) of S and L sclerotia, and an intermediate number of conidia and sclerotia, compared with typical S-strains (minimal conidia, copious sclerotia) and L-strains (copious conidia, minimal sclerotia). They also belonged to a unique phylogenetic mixed (M) clade. Migration from soil to corn positively correlated with conidium production and negatively correlated with sclerotium production. Genetic differences correlated with differences in conidium and sclerotium production. Opposite skews in female (sclerotia) or male (conidia) gametic production by soil or corn strains, respectively, resulted in reduced effective breeding population sizes when comparing male:female gamete ratio with mating type distribution. Combining both soil and corn populations increased the effective breeding population, presumably due to contribution of male gametes from corn, which fertilize sclerotia on the soil surface. Incongruencies between aflatoxin clusters, strain morphotype designation, and whole genome phylogenies suggest a history of sexual reproduction within this Louisiana population, demonstrating the importance of conidium production, as infectious propagules and as fertilizers of the A. flavus soil population. [ABSTRACT FROM AUTHOR]

This paper, with Italy as a case-study, provides a general overview on the ecology of lichenicolous lichens, i.e. those which start their life-cycle on the thallus of other lichens. It aims at testing whether some ecological factors do exert a positive selective pressure on the lichenicolous lifestyle. The incidence of some biological traits (photobionts, growth-forms and reproductive strategies) in lichenicolous and non-lichenicolous lichens was compared, on a set of 3005 infrageneric taxa potentially occurring in Italy, 189 of which are lichenicolous. Lichenicolous lichens have a much higher incidence of coccoid (non-trentepohlioid) green algae, crustose growth-forms and sexual reproduction. A matrix of the 2762 species with phycobionts and some main ecological descriptors was subjected to ordination. Lichenicolous lichens occupy a well-defined portion of the ecological space, tending to grow on rocks in dry, well-lit habitats where a germinating spore is likely to have a short life-span, at all altitudes. This corroborates the hypothesis that at least some of them are not true "parasites", as they are often called, but gather the photobionts - which have already adapted to local ecological conditions - from their hosts, eventually developing an independent thallus. [ABSTRACT FROM AUTHOR]

The Badami Caves are a significant example of ancient Indian rock-cut architecture, dating back to the 6th century. These caves are situated in the Malaprabha River valley and are part of the candidate UNESCO World Heritage Site known as the "Evolution of Temple Architecture—Aihole-Badami-Pattadakal", which is considered to be the cradle of temple architecture in India. Our study aimed to investigate the diversity, distribution, and biodeterioration phenomena of the fungal communities present on the cave surfaces. The study also conducted a comprehensive analysis of fungal biodeterioration on the cave carvings. Utilizing specialized techniques, the dissolution of calcite, alterations in pH levels, and biomineralization capabilities of isolated fungal strains were monitored. Additionally, this study analyzed fungal acid production using high-performance liquid chromatography (HPLC). Our findings revealed that the major genera of fungi found on the cave surfaces included Acremonium, Curvularia, Cladosporium, Penicillium, and Aspergillus. These isolated fungi were observed to produce acids, leading to the dissolution of calcium carbonate and subsequent decrease in pH values. Notably, the dominant genus responsible for acid production and the promotion of biomineralization was Aspergillus. These discoveries provide valuable insight into the ecology and functions of fungi inhabiting stone surfaces, contributing to our understanding of how to preserve and protect sculptures from biodeterioration. [ABSTRACT FROM AUTHOR]

Context. Many mycorrhizal fungi are vital to nutrient acquisition in plant communities, and some taxa are reliant on animal-mediated dispersal. The majority of animals that disperse spores are relatively small and have short-distance movement patterns, but carnivores – and especially apex predators – eat many of these small mycophagists and then move greater distances. No studies to date have assessed the ecosystem services carnivores provide through long-distance spore dispersal. Aims. In this study, we aimed to investigate whether Australia’s free-ranging dogs (Canis familiaris), including dingoes, act as long-distance spore dispersers by predating smaller mycophagous animals and then secondarily dispersing the fungi consumed by these prey species. Methods. To answerthis question, we collected dingo scats along 40 km of transects in eastern Australia and analysed the scats to determine the presence of fungal spores and prey animals. Using telemetry and passage rate data, we then developed a movement model to predict the spore dispersal potential of dingoes. Key results. We found 16 species of mammalian prey to be eaten by dingoes, and those dingo scats contained spores of 14 genera of mycorrhizal fungi. These fungi were more likely to appear in the scats of dingoes if primary mycophagist prey mammals had been consumed. Our model predicted dingo median spore dispersal distance to be 2050 m and maximum dispersal potential to be 10 700 m. Conclusions. Our study indicates that dingoes are providing a previously overlooked ecosystem service through the long-distance dispersal of mycorrhizal fungi. Many of the fungi found in this study form hypogeous (underground) fruiting bodies that are unable to independently spread spores via wind. Because dingoes move over larger areas than their prey, they are especially important to these ecosystem functions. Implications. Our novel approach to studying an overlooked aspect of predator ecology is applicable in most terrestrial ecosystems. Similar modelling approaches could also be employed to understand the dispersal potential of both primary and secondary spore dispersers globally. Because this study highlights an unrecognised ecosystem service provided by dingoes, we hope that it will stimulate research to develop a more comprehensive understanding of other apex predators’ ecosystem functions. [ABSTRACT FROM AUTHOR]

Mycophagous mammals perform important ecosystem services through their dispersal of mycorrhizal fungi (particularly truffles). In order to better understand the role of Tasmanian bandicoots in these associations, we examined the stomach and scat contents of specimens of southern brown bandicoots (Isoodon obesulus) and eastern barred bandicoots (Perameles gunnii) preserved in the mammal collections of the Queen Victoria Museum and Art Gallery. Our study shows that fungi are consumed by both species and that these mammals likely play a key role in ecosystem function through their dispersal of mycorrhizal fungal spores. [ABSTRACT FROM AUTHOR]

The forest pathogen, Heterobasidion irregulare, is a serious threat to conifers in North America including Minnesota. Fungi native to Minnesota were isolated and tested in laboratory and field assays to evaluate their antagonism towards H. irregulare. One management strategy for plant pathogens, and especially H. irregulare, is to use fungi as biological control agents. A successful biological control agent used to manage root rot disease caused by H. irregulare is the fungus Phlebiopsis gigantea. The goal of this research was to screen different native fungi, including P. gigantea, against H. irregulare and examine and quantify their interactions in vitro and ex vitro. A set of four different antagonism assays were conducted. These assays served as a screening process involving both the laboratory and the field. Interactions were first examined with dual inoculation studies on media and wood discs of red pine (Pinus resinosa). These assays demonstrated strong inhibition and limited growth of H. irregulare by select fungi, including Phanerochaete livescens and P. gigantea. Another assay involved using soil microcosms and wood wedges of red pine. This allowed for a different examination, as wood wedges were inoculated with a candidate antagonistic fungus and placed in soil microcosms with H. irregulare. The opposite interaction was also examined with wedges inoculated with H. irregulare and then placed in soil microcosms containing different candidate fungi. In the field, large wood discs were placed around stumps and inoculated with candidate fungi in a red pine plantation infected with H. irregulare. Certain fungi performed well in different assays, but across all assays, P. gigantea performed the best. The antagonism of P. gigantea was most noticeable on wood discs and wood wedges used in vitro, as H. irregulare was not able to be reisolated from these substrates. Overall, these results provide more information on the fungi that appear to be acting as antagonists in forests to prevent H. irregulare from colonizing and provide new information on potential candidate fungi that could be used as a new biological control agent. [ABSTRACT FROM AUTHOR]

Populations of ochratoxin-producing Aspergillus section Circumdati species and aflatoxin-producing Aspergillus section Flavi species frequently coexist in soil and are the main sources of mycotoxin contamination of tree nuts. Identification of mycotoxigenic Aspergillus species in these sections is difficult using traditional isolation and culture methods. We developed a multiplex digital PCR (dPCR) assay to detect and quantify Aspergillus ochraceus, Aspergillus westerdijkiae , and Aspergillus steynii (section Circumdati), as well as Aspergillus flavus and Aspergillus parasiticus (section Flavi), in environmental samples based on species-specific calmodulin gene sequences. Relative quantification of each species by dPCR of mixed-species templates correlated with corresponding DNA input ratios. Target species could be detected in soil inoculated with conidia from each species. Non-target species of sections Circumdati, Flavi , and Nigri were generally not detectable using this dPCR method. Detected non-target species (Aspergillus fresenii, Aspergillus melleus, Aspergillus sclerotiorum , and Aspergillus subramanianii) were discernible from A. ochraceus in dual-template dPCR reactions based on differential fluorescence intensity. [ABSTRACT FROM AUTHOR]

Typified by ancient soils and unique assemblages of flora, Australia provides opportunities to expand our understanding of arbuscular mycorrhizal (AM) fungi. Despite their ubiquity, key aspects of Australian AM fungal ecology remain buried due to our limited knowledge of their biogeography and their potential adaptation to Australia's environmental conditions. This knowledge gap is particularly extraordinary given that the characteristics of the Australian environment are likely to provide unique insights into AM fungal ecology and evolution. Extensive exploration of the diversity and distribution of AM fungi across the continent is overdue. In pursuit of this goal, ecologists should employ the most effective and pragmatic molecular approaches, while making use of well‐curated databases. We urge researchers to examine the biogeography of Australian AM fungi meaningfully, leveraging the distinctive attributes of Australian landscapes, such as the demographics of plant mycorrhizal types and the characteristic interplay with fire. Documenting AM fungal communities across Australia will not only provide unique insights into their ecology but is also pivotal to being able to incorporate these organisms into land management for conservation, restoration and sustainable agriculture. [ABSTRACT FROM AUTHOR]

A revision of neotropical specimens of the genus Carbacanthographis (Graphidaceae, lichenized fungi) revealed the presence of 14 undescribed species: Carbacanthographis bulbosa, C. clandestinospora, C. cristata, C. denudata, C. granulosa, C. inspersomarcescens, C. isidiata, C. latisporoides, C. lucidocleitops, C. minutissima, C. multiseptatoides, C. nigra, C. nitida, and C. protocristata. They are presented below. The genus appears to have a diversity center in semideciduous forests of northern South America, with up to 7 different species on a single tree. [ABSTRACT FROM AUTHOR]

We assessed fungal diversity in water and sediment samples obtained from five Arctic lakes in Ny-Ålesund (Svalbard Islands, High Arctic) and five Antarctic lakes on Livingston and Deception Islands (South Shetland Islands), using DNA metabarcoding. A total of 1,639,074 fungal DNA reads were detected and assigned to 5980 ASVs amplicon sequence variants (ASVs), with only 102 (1.7%) that were shared between the two Polar regions. For Arctic lakes, unknown fungal taxa dominated the sequence assemblages, suggesting the dominance of possibly undescribed fungi. The phylum Chytridiomycota was the most represented in the majority of Arctic and Antarctic samples, followed by Rozellomycota, Ascomycota, Basidiomycota, and the less frequent Monoblepharomycota, Aphelidiomycota, Mortierellomycota, Mucoromycota, and Neocallimastigomycota. At the genus level, the most abundant genera included psychrotolerant and cosmopolitan cold-adapted fungi including Alternaria, Cladosporium, Cadophora, Ulvella (Ascomycota), Leucosporidium, Vishniacozyma (Basidiomycota), and Betamyces (Chytridiomycota). The assemblages displayed high diversity and richness. The assigned diversity was composed mainly of taxa recognized as saprophytic fungi, followed by pathogenic and symbiotic fungi. [ABSTRACT FROM AUTHOR]

Arbuscular mycorrhizal fungi (AMF) in the roots and soil surrounding their hosts are typically independently investigated and little is known of the relationships between the communities of the two compartments. We simultaneously collected root and surrounding soil samples from Cryptomeria japonica (Cj) and Chamaecyparis obtusa (Co) at three environmentally different sites. Based on molecular and morphological analyses, we characterized their associated AMF communities. Cj was more densely colonized than Co and that root colonization intensity was significantly correlated with soil AMF diversity. The communities comprised 15 AMF genera dominated by Glomus and Paraglomus and 1443 operational taxonomic units (OTUs) of which 1067 and 1170 were in roots and soil, respectively. AMF communities were significantly different among sites, and the root AMF communities were significantly different from those of soil at each site. The root and soil AMF communities responded differently to soil pH. At the genus level, Glomus and Acaulospora were abundant in roots while Paraglomus and Redeckera were abundant in soil. Our findings suggest that AMF colonizing roots are protected from environmental stresses in soil. However, the root-soil-abundant taxa have adapted to both environments and represent a model AMF symbiont. This evidence of strategic exploitation of the rhizosphere by AMF supports prior hypotheses and provides insights into community ecology. [ABSTRACT FROM AUTHOR]

Fire has shaped global ecosystems for millennia by directly killing organisms and indirectly altering habitats and resources. All terrestrial ecosystems, including fire‐prone ecosystems, rely on soil‐inhabiting fungi, where they play vital roles in ecological processes. Yet our understanding of how fire regimes influence soil fungi remains limited and our knowledge of these interactions in semiarid landscapes is virtually absent. We collected soil samples and vegetation measurements from sites across a gradient in time‐since‐fire ages (0–75 years‐since‐fire) and fire frequency (burnt 0–5 times during the recent 29‐year period) in a semiarid heathland of south‐eastern Australia. We characterized fungal communities using ITS amplicon‐sequencing and assigned fungi taxonomically to trophic guilds. We used structural equation models to examine direct, indirect and total effects of time‐since‐fire and fire frequency on total fungal, ectomycorrhizal, saprotrophic and pathogenic richness. We used multivariate analyses to investigate how total fungal, ectomycorrhizal, saprotrophic and pathogenic species composition differed between post‐fire successional stages and fire frequency classes. Time‐since‐fire was an important driver of saprotrophic richness; directly, saprotrophic richness increased with time‐since‐fire, and indirectly, saprotrophic richness declined with time‐since‐fire (resulting in a positive total effect), mediated through the impact of fire on substrates. Frequently burnt sites had lower numbers of saprotrophic and pathogenic species. Post‐fire successional stages and fire frequency classes were characterized by distinct fungal communities, with large differences in ectomycorrhizal species composition. Understanding the complex responses of fungal communities to fire can be improved by exploring how the effects of fire flow through ecosystems. Diverse fire histories may be important for maintaining the functional diversity of fungi in semiarid regions. [ABSTRACT FROM AUTHOR]

Including fungi into nature conservation research allows for a more comprehensive view of habitat quality thanks to their unique role in ecosystems. However, a broad application of fungi as indicators is limited mainly by the ephemeral occurrence of their fruitbodies and insufficient knowledge of their ecology. To overcome these limitations, we searched for fruitbodies of selected fungal peatland indicator species (Arrhenia bigelowii, A. gerardiana, A. telmatiaea, Cortinarius chrysolitus, C. davemallochii and Galerina hybrida) in various raised bogs and transitional mires (61 localities, 144 collections) in a wide area around disturbed, industrially harvested raised bogs under restoration. We aim to verify whether these species could be detected by routine environmental sequencing (eDNA), and to assess their habitat requirements by analysing the vegetation around fruitbodies and fungal communities under them. Generally, the studied fungal indicator species preferred sites where peatland specialist plants occurred. Vegetation survey and eDNA highlighted a broad ecological niche of Galerina hybrida across peatlands and a preference of Cortinarius chrysolitus for transitional mires. Because the eDNA approach sometimes failed to detect these species even under their fruitbodies (14% of samples), and these species tend to occur rarely and patchily in their habitats, we subsequently selected eight co-occurring vascular plant species, four co-occurring bryophyte species and 23 co-occurring fungal OTUs (operational taxonomic units) which were significantly associated with the studied fungal indicator fruitbodies, possibly indicating potentially suitable conditions for them. The information obtained from eDNA of fungi is still difficult to interpret because many unknown OTUs were detected in the datasets. Nevertheless, similarly to the co-occurring plant species, the presence of the co-occurring fungal OTUs was significantly higher in undisturbed raised bogs than in the disturbed ones. This approach may predict the occurrence of fungal indicator species in the absence of their fruitbodies or when environmental sequencing fails to detect their DNA. This method can be applied to more effectively monitor the restoration success in peatlands.

The galling insect Leptocybe invasa Fisher & La Salle (Hymenoptera: Eulophidae) is a major limiting factor in the cultivation of drought-tolerant eucalyptus. The insect L. invasa is a major pest of eucalyptus plantations, and Beauveria bassiana (Bals.) Vuill (Ascomycota: Hypocreales) is being investigated as a potential biocontrol agent against this pest. The fungus B. bassiana can produce metabolites that affect insect biology and survival. Here, we investigated the ability of the entomopathogenic B. bassiana to endophytically develop and induce resistance to L. invasa in a drought-tolerant eucalyptus hybrid. In a greenhouse under semi-controlled conditions, a group of seedlings were sprayed with a solution containing the fungal spores of B. bassiana. The uninoculated seedlings and seedlings inoculated were infested with L. invasa, and their morphometric responses, gas exchange, and chlorophyll indexes were assessed. The number of leaves and height of the inoculated plants was higher than those of the uninoculated plants. The mean CO2 assimilation rate (A) and transpiration rate (E) were higher for inoculated plants. The inoculated plants showed higher chl a and chl b contents. Compared to the uninoculated plants, the inoculated plants developed much fewer galls, while some showed only scar formations where L. invasa deposited its eggs. These results indicated that inoculating Eucalyptus with B. bassiana promoted resistance to L. invasa. To the best of our knowledge, this is the first study showing that an entomopathogenic fungus can develop endophytically to promote resistance against a galling insect pest. [ABSTRACT FROM AUTHOR]

Phlebopus portentosus is a favorite wild, edible mushroom in the tropical region of China and northern Thailand. P. portentosus is the only bolete in the Boletales order that has been commercially cultivated. Sclerotia produced by the mushroom are often found in its natural habitats and cultivated media. These sclerotia play a key role in its life cycle. However, the regularity and growth characteristics of the sclerotium are unknown. In this paper, the whole process of birth, growth, death and rebirth of the sclerotium of P. portentosus under natural and lab conditions is reported for the first time. Sclerotium formation in nature is due to environmental stress, such as drought or low temperature. The less rainfall, the more sclerotia are produced. It appears that a lower temperature can also initiate sclerotium formation; however, the relationship between sclerotium formation and temperature is not as clear as that between sclerotium formation and rainfall. Under artificial conditions, the sclerotium formation of P. portentosus is related to the fungus' physiological maturation. The presence of sclerotia is always accompanied by the exudation of liquid droplets on the colony. The results of this study should provide a platform for research on the importance of sclerotium formation in the life cycle of P. portentosus. [ABSTRACT FROM AUTHOR]

The study of symbiotic relationship between species of microorganisms and invertebrates is one of the most important fields of soil microbial ecology. The vast diversity of microbes and animals suggests various links between them, including gut symbiosis. It is now well established that a healthy gut microbiota is largely responsible for overall health of the host. Fungi were isolated from the gut microbiota of the earthworm Amynthas morissi collected from the O horizons soil of Imphal valley, Manipur, Northeast India. Molecular phylogeny and internal transcribed spacer (ITS) gene sequence analysis demonstrated that the fungal strains belonged to four genera, Aspergillus, Penicillium, Myrothecium and Fusarium. Their potential to assimilate raw humus was tested based on secretion of extracellular enzymes. The abilities varied. Only Aspergillus tabacinus assimilated starch. Aspergillus terreus strongly assimilated pectin from citrus and birch xylan. A. tabacinus and Penicillium pinophilum assimilated protein. All the fungi assimilated cellulose. These results suggest a symbiotic association with multiple fungal species, with various carbon assimilation abilities. This would help the earthworm A. morissi to achieve efficient decomposition of complex macromolecular. [ABSTRACT FROM AUTHOR]

This study investigated the morphological diversity of arenicolous marine fungi (only those forming fruiting bodies on sand grains) at 11 sandy beaches in Taiwan. The species of Corollospora were identified by ascospore morphology and confirmed through a phylogenetic analysis of the 28S rDNA with other published sequences. The phylogenetic analysis revealed four previously unknown clades of Corollospora spp. related to C. portsaidica, while differences in ascospore morphology of the isolates in these four clades were observed. A total of 13 species of arenicolous marine fungi was identified from the 11 sandy beaches, including two Arenariomyces spp., nine Corollospora spp. (including four unknown Corollospora clades), Kohlmeyeriella crassa and Carbosphaerella cf sp. Taan Beach had the highest species richness (eight species), followed by Yongzhen Sea Park and Pisirian (five species each). The Shannon's diversity index revealed the highest diversity at Taan Beach (1.51) over Pisirian (1.44), but the diversity was more even at the latter site (Pielou's evenness index = 0.9) compared with the former (0.73). Non-metric multidimensional scaling suggests that there was generally a divide in the fungal community composition between the east and the west coasts of Taiwan. [ABSTRACT FROM AUTHOR]

The Badami Caves are a significant example of ancient Indian rock-cut architecture, dating back to the 6th century. These caves are situated in the Malaprabha River valley and are part of the candidate UNESCO World Heritage Site known as the “Evolution of Temple Architecture—Aihole-Badami-Pattadakal”, which is considered to be the cradle of temple architecture in India. Our study aimed to investigate the diversity, distribution, and biodeterioration phenomena of the fungal communities present on the cave surfaces. The study also conducted a comprehensive analysis of fungal biodeterioration on the cave carvings. Utilizing specialized techniques, the dissolution of calcite, alterations in pH levels, and biomineralization capabilities of isolated fungal strains were monitored. Additionally, this study analyzed fungal acid production using high-performance liquid chromatography (HPLC). Our findings revealed that the major genera of fungi found on the cave surfaces included Acremonium, Curvularia, Cladosporium, Penicillium, and Aspergillus. These isolated fungi were observed to produce acids, leading to the dissolution of calcium carbonate and subsequent decrease in pH values. Notably, the dominant genus responsible for acid production and the promotion of biomineralization was Aspergillus. These discoveries provide valuable insight into the ecology and functions of fungi inhabiting stone surfaces, contributing to our understanding of how to preserve and protect sculptures from biodeterioration.

The species of Calonectria include many notorious plant pathogens and are widely distributed around the world. Leaf blight caused by Calonectria species is considered one of the most prominent diseases in Eucalyptus plantations in China. Some Calonectria species isolated from soils in Eucalyptus plantations are highly pathogenic to inoculated Eucalyptus genotypes. In southern China, the plantation trees Cunninghamia lanceolata, Eucalyptus spp., and Pinus massoniana are always adjacently planted, especially in FuJian, GuangDong, GuangXi, and YunNan Provinces. The aim of this study was to understand the diversity and distribution of Calonectria in soils from plantations of different tree species in different geographic regions. Soil samples were collected from 12 sampling sites in Eucalyptus urophylla × E. grandis, P. massoniana, and C. lanceolata plantations in FuJian, GuangDong, GuangXi, and YunNan Provinces. Approximately 250 soil samples were collected from each sampling site, and a total of 2991 soil samples were obtained. A total of 1270 Calonectria isolates were obtained from 1270 soil samples. The 1270 isolates were identified based on DNA sequence comparisons of the partial gene regions of act, cmdA, his3, rpb2, tef1, and tub2. These isolates were identified as 11 Calonectria species: Calonectria aconidialis (69.50%), C. kyotensis (13.10%), C. hongkongensis (10.80%), C. ilicicola (2.50%), C. asiatica (2.36%), C. curvispora (0.31%), C. chinensis (0.24%), C. pacifica (0.24%), C. yunnanensis (0.16%), and C. canadiana (0.08%) in the C. kyotensis species complex and C. eucalypti (0.71%) in the C. colhounii species complex. The three dominant species, C. aconidialis, C. kyotensis, and C. hongkongensis, were widely distributed. The richness of Calonectria (percentage of soil samples that yielded Calonectria) in soils in the eastern regions (relatively humid regions) was higher than that in the western regions. The Calonectria richness of E. urophylla × E. grandis, P. massoniana, and C. lanceolata plantations decreased gradually. For each of the three dominant species, its richness in the eastern regions was generally higher than that in the western regions; the species richness was highest in E. urophylla × E. grandis plantations for C. aconidialis, while for each of C. kyotensis and C. hongkongensis, its species richness was highest in P. massoniana plantations. The genetic variation in C. aconidialis, C. kyotensis, and C. hongkongensis was more greatly affected by geographic region than by plantation tree species. This study expanded our understanding of the richness, species diversity, and distribution characteristics of Calonectria in soils from the plantations of different tree species in different geographic regions in southern China. Results in this study enhanced our understanding of the influencing characteristics of geographic region and tree species on the species and genetic diversity of soilborne fungi. [ABSTRACT FROM AUTHOR]

Although the anthropogenic decline in atmospheric carbon stable isotope ratios (δ13C) over the last 150 years (termed the Suess effect) is well-studied, how different terrestrial trophic levels and modes reflect this decline remains unresolved. To evaluate the Suess effect as an opportunistic tracer of terrestrial forest carbon cycling, this study analyzed the δ13C in herbarium specimens collected in Minnesota, USA from 1877 to 2019. Our results suggest that both broadleaf trees and ectomycorrhizal fungi relied on recent photosynthate to produce leaves and sporocarps, while saprotrophic fungi on average used carbon fixed from the atmosphere 32–55 years ago for sporocarp construction. The δ13C values of saprotrophic fungal collections were also sensitive to the age of their plant carbon substrate, with sporocarps of twig specialists tracking changes in atmospheric δ13C more closely than saprotrophs growing on logs. Collectively, this study indicates that natural history collections can quantitatively track carbon cycling among plants and fungi over time. [ABSTRACT FROM AUTHOR]

Antarctic cryptoendolithic microbial communities dominate ice-free areas of continental Antarctica, among the harshest environments on Earth. The endolithic lifestyle is a remarkable adaptation to the exceptional environmental extremes of this area, which is considered the closest terrestrial example to conditions on Mars. Recent efforts have attempted to elucidate composition of these extremely adapted communities, but the functionality of these microbes have remained unexplored. We have tested for interactions between measured environmental characteristics, fungal community membership, and inferred functional classification of the fungi present and found altitude and sun exposure were primary factors. Sandstone rocks were collected in Victoria Land, Antarctica along an altitudinal gradient from 834 to 3100 m a.s.l.; differently sun-exposed rocks were selected to test the influence of this parameter on endolithic settlement. Metabarcoding targeting the fungal internal transcribed spacer region 1 (ITS1) was used to catalogue the species found in these communities. Functional profile of guilds found in the samples was associated to species using FUNGuild and variation in functional groups compared across sunlight exposure and altitude. Results revealed clear dominance of lichenized and stress-tolerant fungi in endolithic communities. The main variations in composition and abundance of functional groups among sites correlated to sun exposure, but not to altitude.

Large datasets are highly valuable resources to investigate multi-scale patterns of organisms, and lay foundations for citizen science-based conservation strategies. Here, we used 1,043,262 records from 1708 to 2021 to explore the geography, taxonomy, ecology and distribution patterns of 11,556 fungal taxa in metropolitan France. Our analysis reveals a four-phase pattern of temporal recording, with a main contribution of post-1977 observations in relation with the structuration of associative mycology. The dataset shows an uneven geography of fungal recording. Four clusters of high-intensity sampling scattered across France contrast with poorly documented areas, including the Mediterranean. Basidiomycota and Agaricales highly dominate the dataset, accounting for 88.8 and 50.4% of records, respectively. The dataset is composed of many rare taxa, with 61.2% of them showing fewer than 100 records, and 20.5% recorded only once. The analysis of metadata brings to light a preponderance of the mycorrhizal guild (44.6%), followed by litter saprotrophs (31.6%) and wood saprotrophs (18.1%). Highly documented forests (76.3% of records) contrast with poorly investigated artificial (6.43%) and open habitats (10.1%). This work provides the first comprehensive overview of fungal diversity in France and identifies the Mediterranean area and open habitats as priorities to integrate into a global strategy for fungal conservation in France. [ABSTRACT FROM AUTHOR]

Biodiversity, the source of origin, and ecological roles of fungi in groundwater are to this day a largely neglected field in fungal and freshwater ecology. We used DNA-based Illumina high-throughput sequence analysis of both fungal gene markers 5.8S and internal transcribed spacers region 2 (ITS2), improving taxonomic classification. This study focused on the groundwater and river mycobiome along an altitudinal and longitudinal transect of a pre-alpine valley in Austria in two seasons. Using Bayesian network modeling approaches, we identified patterns in fungal community assemblages that were mostly shaped by differences in landscape (climatic, topological, and geological) and environmental conditions. While river fungi were comparatively more diverse, unique fungal assemblages could be recovered from groundwater, including typical aquatic lineages such as Rozellomycota and Olpidiomycota. The most specious assemblages in groundwater were not linked to the input of organic material from the surface, and as such, seem to be sustained by characteristic groundwater conditions. Based on what is known from closely related fungi, our results suggest that the present fungal communities potentially contribute to mineral weathering, carbon cycling, and denitrification in groundwater. Furthermore, we were able to observe the effects of varying land cover due to agricultural practices on fungal biodiversity in groundwater ecosystems. This study contributes to improving our understanding of fungi in the subsurface aquatic biogeosphere., (© The Author(s) 2024. Published by Oxford University Press on behalf of FEMS.)

Grapevine trunk diseases cause serious economic losses to grape growers worldwide. The identification of the causal fungi is critical to implementing appropriate management strategies. Through a culture-based approach, we identified the fungal species composition associated with symptomatic grapevines from wine grapes in southeastern Washington and table grapes in the southern San Joaquin Valley of California, two regions with contrasting winter climates. Species were confirmed through molecular identification, sequencing two to six gene regions per isolate. Multilocus phylogenetic analyses were used to identify novel species. We identified 36 species from 112 isolates, with a combination of species that are new to science, are known causal fungi of grapevine trunk diseases, or are known causal fungi of diseases of other woody plants. The novel species Cadophora columbiana, Cytospora macropycnidia, Cytospora yakimana, and Sporocadus incarnatus are formally described and introduced, six species are newly reported from North America, and grape is reported as a new host for three species. Six species were shared between the two regions: Cytospora viticola, Diatrype stigma, Diplodia seriata, Kalmusia variispora, Phaeoacremonium minimum, and Phaeomoniella chlamydospora. Dominating the fungal community in Washington wine grape vineyards were species in the fungal families Diatrypaceae, Cytosporaceae and Sporocadaceae, whereas in California table grape vineyards, the dominant species were in the families Diatrypaceae, Togniniaceae, Phaeomoniellaceae and Hymenochaetaceae. Pathogenicity tests demonstrated that 10 isolates caused wood discoloration similar to symptomatic wood from which they were originally isolated. Growth rates at temperatures from 5 to 35°C of 10 isolates per region, suggest that adaptation to local climate might explain their distribution.

The galling insect Leptocybe invasa Fisher & La Salle (Hymenoptera: Eulophidae) is a major limiting factor in the cultivation of drought-tolerant eucalyptus. The insect L. invasa is a major pest of eucalyptus plantations, and Beauveria bassiana (Bals.) Vuill (Ascomycota: Hypocreales) is being investigated as a potential biocontrol agent against this pest. The fungus B. bassiana can produce metabolites that affect insect biology and survival. Here, we investigated the ability of the entomopathogenic B. bassiana to endophytically develop and induce resistance to L. invasa in a drought-tolerant eucalyptus hybrid. In a greenhouse under semi-controlled conditions, a group of seedlings were sprayed with a solution containing the fungal spores of B. bassiana. The uninoculated seedlings and seedlings inoculated were infested with L. invasa, and their morphometric responses, gas exchange, and chlorophyll indexes were assessed. The number of leaves and height of the inoculated plants was higher than those of the uninoculated plants. The mean CO2 assimilation rate (A) and transpiration rate (E) were higher for inoculated plants. The inoculated plants showed higher chl a and chl b contents. Compared to the uninoculated plants, the inoculated plants developed much fewer galls, while some showed only scar formations where L. invasa deposited its eggs. These results indicated that inoculating Eucalyptus with B. bassiana promoted resistance to L. invasa. To the best of our knowledge, this is the first study showing that an entomopathogenic fungus can develop endophytically to promote resistance against a galling insect pest.

The genus Colletotrichum comprises an important and diverse group of endophytes, saprophytes and plant pathogens, many of which cause a syndrome known as anthracnose, on a wide range of hosts, mainly in tropical and subtropical regions. Since most of the accumulated research on the genus focuses on cultivated plants of commercial interest, the aim of this review was to explore how the genus has been studied in native woody plants in natural ecosystems. Following the PRISMA protocol for systematic reviews, we identified 52 original scientific publications that recorded Colletotrichum species associated with native woody hosts in natural environments in a taxonomic, ecological or phytosanitary context. Here, we conclude that research in natural ecosystems is scarce, mostly carried out in tropical areas and mainly focused on aspects of community ecology. We also observed the cosmopolitan nature of the genus, associated with many hosts, mostly as endophytes. The species most frequently recorded were in the 'gloeosporioides' complex, although due to the limitations in identification methods used in the studies, a large proportion of records could not be identified or verified at the species level. [ABSTRACT FROM AUTHOR]

The kingdom of fungi comprises a large and highly diverse group of organisms that thrive in diverse natural environments. One factor to successfully confront challenges in their natural habitats is the capability to synthesize defensive secondary metabolites. The genetic potential for the production of secondary metabolites in fungi is high and numerous potential secondary metabolite gene clusters have been identified in sequenced fungal genomes. Their production may well be regulated by specific ecological conditions, such as the presence of microbial competitors, symbionts or predators. Here we exemplarily summarize our current knowledge on identified secondary metabolites of the pathogenic fungus Aspergillus fumigatus and their defensive function against (microbial) predators.

Phlebopus portentosus is a favorite wild, edible mushroom in the tropical region of China and northern Thailand. P. portentosus is the only bolete in the Boletales order that has been commercially cultivated. Sclerotia produced by the mushroom are often found in its natural habitats and cultivated media. These sclerotia play a key role in its life cycle. However, the regularity and growth characteristics of the sclerotium are unknown. In this paper, the whole process of birth, growth, death and rebirth of the sclerotium of P. portentosus under natural and lab conditions is reported for the first time. Sclerotium formation in nature is due to environmental stress, such as drought or low temperature. The less rainfall, the more sclerotia are produced. It appears that a lower temperature can also initiate sclerotium formation; however, the relationship between sclerotium formation and temperature is not as clear as that between sclerotium formation and rainfall. Under artificial conditions, the sclerotium formation of P. portentosus is related to the fungus’ physiological maturation. The presence of sclerotia is always accompanied by the exudation of liquid droplets on the colony. The results of this study should provide a platform for research on the importance of sclerotium formation in the life cycle of P. portentosus.

Grapevine trunk diseases (GTDs) are a major threat to the wine industry, causing yield loss and dieback of grapevines. While the increasing damage caused by GTDs in recent decades have spurred several studies on grapevine-associated pathogenic fungi, key questions about the emergence and severity of GTDs remain unanswered, including possible differences in plant pathogenic fungal communities in asymptomatic and symptomatic grapevines. We generated fungal DNA metabarcoding data from soil, bark, and perennial wood samples from asymptomatic and symptomatic grapevines sampled in three terroirs. We observed larger compositional differences in plant pathogenic fungi among different plants parts within grapevine plants than among individual grapevines. This is driven by the dominance of GTD-associated fungi in perennial wood and non-GTD pathogens in soil, as well as by the lack of significant differences among asymptomatic and Esca symptomatic grapevines. These results suggest that fungi generally associated with Esca disease belong to the core grapevine microbiome and likely are commensal endophytes and/or latent saprotrophs, some of which can act as opportunistic pathogens on stressed plants. In addition, we found significant compositional differences among sampling sites, particularly in soil, which suggest a certain influence of local edaphic and mesoclimatic factors on plant pathogenic fungal communities. Furthermore, the observed differences among terroirs in plant pathogenic fungal communities in grapevine woody parts indicate that environmental factors likely are important for the development of Esca disease and further studies are needed to investigate the abiotic conditions on fungal compositional dynamics in Esca-affected plants. [ABSTRACT FROM AUTHOR]

Invasive tree species change biodiversity, nutrient cycles, and ecosystem services, and can turn native ecosystems into novel ecosystems determined by invaders. In the acclimatization and invasion of alien tree species, the crucial role is played by ectomycorrhizal (ECM) fungi. We tested ECM fungi associated with Quercus rubra and Carya trees that are alien to Europe. Quercus rubra is among the most invasive tree species in Europe, and the Carya species are not considered invasive. Both form ectomycorrhizal symbiosis, and in their native range in North America, coexist in oak-hickory forests. Six study stands were located in Kórnik Arboretum: three for Q. rubra and three for Carya trees. Ectomycorrhizal fungi were assessed by molecular identification of ECM roots. We identified 73 ECM fungal taxa of 23 ECM phylogenetic lineages. All identified ECM fungi were native to Europe. Similar richness but different composition of ECM taxa were found on Q. rubra and Carya roots. Phylogenetic lineages /tomentella-thelephora, /russula-lactarius, and /genea-humaria were most abundant on both Carya and Q. rubra roots. Lineages /tuber-helvella and /entoloma were abundant only on Carya, and lineages /pisolithus-scleroderma and /cortinarius were abundant only on Q. rubra roots. Analysis of similarities revealed a significant difference in ectomycorrhizal assemblages between invasive Q. rubra and non-invasive Carya. Highlights: (1) under common garden conditions, ECM taxa richness was similar on Q. rubra and Carya roots; (2) ECM taxa composition differed between invasive Q. rubra and non-invasive Carya; (3) high abundance of long-distance exploration type (lineages from Boletales) was on Q. rubra; and (4) high abundance of short-distance exploration type (e.g., /tuber-helvella) was on Carya. [ABSTRACT FROM AUTHOR]

Associations between soil minerals and microbially derived organic matter (often referred to as mineral‐associated organic matter or MAOM) form a large pool of slowly cycling carbon (C). The rhizosphere, soil immediately adjacent to roots, is thought to control the spatial extent of MAOM formation because it is the dominant entry point of new C inputs to soil. However, emphasis on the rhizosphere implicitly assumes that microbial redistribution of C into bulk (non‐rhizosphere) soils is minimal. We question this assumption, arguing that because of extensive fungal exploration and rapid hyphal turnover, fungal redistribution of soil C from the rhizosphere to bulk soil minerals is common, and encourages MAOM formation. First, we summarize published estimates of fungal hyphal length density and turnover rates and demonstrate that fungal C inputs are high throughout the rhizosphere–bulk soil continuum. Second, because colonization of hyphal surfaces is a common dispersal mechanism for soil bacteria, we argue that hyphal exploration allows for the non‐random colonization of mineral surfaces by hyphae‐associated taxa. Third, these bacterial communities and their fungal hosts determine the chemical form of organic matter deposited on colonized mineral surfaces. Collectively, our analysis demonstrates that omission of the hyphosphere from conceptual models of soil C flow overlooks key mechanisms for MAOM formation in bulk soils. Moving forward, there is a clear need for spatially explicit, quantitative research characterizing the environmental drivers of hyphal exploration and hyphosphere community composition across systems, as these are important controls over the rate and organic chemistry of C deposited on minerals. [ABSTRACT FROM AUTHOR]

Wall paintings have been a cultural expression of human creativity throughout history. Their degradation or destruction represents a loss to the world's cultural heritage, and fungi have been identified as a major contributor to their decay. We provide a critical review of fungi isolated from worldwide wall paintings between 1961–2021. One-hundred three scientific papers were reviewed focusing on fungal diversity, isolation protocols, and spatial distribution of data. The study sites were grouped into five environmental categories on the basis of the expected major microclimatic conditions (temperature, relative humidity, ventilation), and the possible relationship with the species found was investigated. The highest number of records were localized in Europe, with 38 sites on a total of 74, 20 of which were from Italy. A total of 378 fungal entries were obtained, consisting of 1209 records, belonging to 260 different species and 173 genera. The accuracy level in taxa determination was highly variable among different papers analyzed. Data showed a dominance of Ascomycota, mainly of orders Eurotiales and Hypocreales probably due to their wide distribution and easily air dispersed spores and due to the possible pitfalls linked to the isolation methods, favoring rapidly growing taxa. Statistical analyses revealed that fungal communities were not strictly linked to environmental categories with different ventilation, temperature, and humidity. Such findings may be due to the wide geographical area, the wide heterogeneity of the data, and/or the absence of standardized sampling and analyses protocols. They could also be the result of the dominance of some prevailing factors in the various sites that mask the influence one of each other. [ABSTRACT FROM AUTHOR]

Fungal communities are known to contribute to the functioning of living plant microbiomes as well as to the decay of dead plant material and affect vital ecosystem services, such as pathogen resistance and nutrient cycling. Yet, factors that drive structure and function of phyllosphere mycobiomes and their fate in leaf litter are often ignored. We sought to determine the factors contributing to the composition of communities in temperate forest substrates, with culture-independent amplicon sequencing of fungal communities of pre-senescent leaf surfaces, internal tissues, leaf litter, underlying humus soil of co-occurring red maple (Acer rubrum) and shagbark hickory (Carya ovata). Paired samples were taken at five sites within a temperate forest in southern Michigan, USA. Fungal communities were differentiable based on substrate, host species, and site, as well as all two-way and three-way interactions of these variables. PERMANOVA analyses and co-occurrence of taxa indicate that soil communities are unique from both phyllosphere and leaf litter communities. Correspondence of endophyte, epiphyte, and litter communities suggests dispersal plays an important role in structuring fungal communities. Future work will be needed to assess how this dispersal changes microbial community functioning in these niches. [ABSTRACT FROM AUTHOR]

Root‐associated fungal communities modify the climatic niches and even the competitive ability of their hosts, yet how the different components of the root microbiome are modified by habitat loss remains a key knowledge gap. Using principles of landscape ecology, we tested how free‐living versus host‐associated microbes differ in their response to landscape heterogeneity. Further, we explore how compartmentalisation of microbes into specialised root structures filters for key fungal symbionts. Our study demonstrates that free‐living fungal community structure correlates with landscape heterogeneity, but that host‐associated fungal communities depart from these patterns. Specifically, biotic filtering in roots, especially via compartmentalisation within specialised root structures, decouples the biogeographic patterns of host‐associated fungal communities from the soil community. In this way, even as habitat loss and fragmentation threaten fungal diversity in the soils, plant hosts exert biotic controls to ensure associations with critical mutualists, helping to preserve the root mycobiome. [ABSTRACT FROM AUTHOR]

Background Freshwater fungi, growing on submerged wood, can promote the degradation of organisms and the reuse of rotten wood energy and play key roles in freshwater ecosystems. Here, a new hyphomycetous fungus, Sporidesmiella lignicola, was isolated and identified from submerged wood samples collected in a small stream in Jiangxi Province, south-eastern China. New information The new taxon was studied, based on morphological characters and phylogenetic analyses combined with LSU, ITS, TEF1α and RPB2 sequences data. Sporidesmiella lignicola was morphologically characterised by its pink colonies on PDA medium in prophase, macronematous, mononematous, solitary, brown, septate, unbranched, straight or slightly flexuous conidiophores with holoblastic, polyblastic, integrated, terminal, pale brown conidiogenous cells and cylindrical, narrowly clavate, broadly obovoid to cuneiform, 3--4- distoseptate, olivaceous brown or brown conidia with rounded apex. A phylogenetic tree was constructed, based on the combination of LSU, ITS, TEF1α and RPB2 sequences data. [ABSTRACT FROM AUTHOR]

Abstract Scientific information about biodiversity distribution is indispensable for nature conservation and sustainable management of natural resources. For several groups of animals and plants, such data are available, but for fungi, especially in tropical regions like West Africa, they are mostly missing. Here, information for West African countries about species diversity of fungi and fungus-like organisms (other organisms traditionally studied by mycologists) is compiled from literature and analysed in its historical context for the first time. More than 16,000 records of fungi representing 4843 species and infraspecific taxa were found in 860 publications relating to West Africa. Records from the Global Biodiversity Information Facility (GBIF) database (2395 species), and that of the former International Mycological Institute fungal reference collection (IMI) (2526 species) were also considered. The compilation based on literature is more comprehensive than the GBIF and IMI data, although they include 914 and 679 species names, respectively, which are not present in the checklist based on literature. According to data available in literature, knowledge on fungal richness ranges from 19 species (Guinea Bissau) to 1595 (Sierra Leone). In estimating existing species diversity, richness estimators and the Hawksworth 6:1 fungus to plant species ratio were used. Based on the Hawksworth ratio, known fungal diversity in West Africa represents 11.4% of the expected diversity. For six West African countries, however, known fungal species diversity is less than 2%. Incomplete knowledge of fungal diversity is also evident by species accumulation curves not reaching saturation, by 45.3% of the fungal species in the checklist being cited only once for West Africa, and by 66.5% of the fungal species in the checklist reported only for a single country. The documentation of different systematic groups of fungi is very heterogeneous because historically investigations have been sporadic. Recent opportunistic sampling activities in Benin showed that it is not difficult to find specimens representing new country records. Investigation of fungi in West Africa started just over two centuries ago and it is still in an early pioneer phase. To promote proper exploration, the present checklist is provided as a tool to facilitate fungal identification in this region and to aid conceptualisation and justification of future research projects. Documentation of fungal diversity is urgently needed because natural habitats are being lost on a large scale through altered land use and climate change.

Fungal communities are known to contribute to the functioning of living plant microbiomes as well as to the decay of dead plant material and affect vital ecosystem services, such as pathogen resistance and nutrient cycling. Yet, factors that drive structure and function of phyllosphere mycobiomes and their fate in leaf litter are often ignored. We sought to determine the factors contributing to the composition of communities in temperate forest substrates, with culture-independent amplicon sequencing of fungal communities of pre-senescent leaf surfaces, internal tissues, leaf litter, underlying humus soil of co-occurring red maple (Acer rubrum) and shagbark hickory (Carya ovata). Paired samples were taken at five sites within a temperate forest in southern Michigan, USA. Fungal communities were differentiable based on substrate, host species, and site, as well as all two-way and three-way interactions of these variables. PERMANOVA analyses and co-occurrence of taxa indicate that soil communities are unique from both phyllosphere and leaf litter communities. Correspondence of endophyte, epiphyte, and litter communities suggests dispersal plays an important role in structuring fungal communities. Future work will be needed to assess how this dispersal changes microbial community functioning in these niches.

The species of Calonectria include many notorious plant pathogens and are widely distributed around the world. Leaf blight caused by Calonectria species is considered one of the most prominent diseases in Eucalyptus plantations in China. Some Calonectria species isolated from soils in Eucalyptus plantations are highly pathogenic to inoculated Eucalyptus genotypes. In southern China, the plantation trees Cunninghamia lanceolata, Eucalyptus spp., and Pinus massoniana are always adjacently planted, especially in FuJian, GuangDong, GuangXi, and YunNan Provinces. The aim of this study was to understand the diversity and distribution of Calonectria in soils from plantations of different tree species in different geographic regions. Soil samples were collected from 12 sampling sites in Eucalyptus urophylla × E. grandis, P. massoniana, and C. lanceolata plantations in FuJian, GuangDong, GuangXi, and YunNan Provinces. Approximately 250 soil samples were collected from each sampling site, and a total of 2991 soil samples were obtained. A total of 1270 Calonectria isolates were obtained from 1270 soil samples. The 1270 isolates were identified based on DNA sequence comparisons of the partial gene regions of act, cmdA, his3, rpb2, tef1, and tub2. These isolates were identified as 11 Calonectria species: Calonectria aconidialis (69.50%), C. kyotensis (13.10%), C. hongkongensis (10.80%), C. ilicicola (2.50%), C. asiatica (2.36%), C. curvispora (0.31%), C. chinensis (0.24%), C. pacifica (0.24%), C. yunnanensis (0.16%), and C. canadiana (0.08%) in the C. kyotensis species complex and C. eucalypti (0.71%) in the C. colhounii species complex. The three dominant species, C. aconidialis, C. kyotensis, and C. hongkongensis, were widely distributed. The richness of Calonectria (percentage of soil samples that yielded Calonectria) in soils in the eastern regions (relatively humid regions) was higher than that in the western regions. The Calonectria richness of E. urophylla × E. grandis, P. massoniana, and C. lanceolata plantations decreased gradually. For each of the three dominant species, its richness in the eastern regions was generally higher than that in the western regions; the species richness was highest in E. urophylla × E. grandis plantations for C. aconidialis, while for each of C. kyotensis and C. hongkongensis, its species richness was highest in P. massoniana plantations. The genetic variation in C. aconidialis, C. kyotensis, and C. hongkongensis was more greatly affected by geographic region than by plantation tree species. This study expanded our understanding of the richness, species diversity, and distribution characteristics of Calonectria in soils from the plantations of different tree species in different geographic regions in southern China. Results in this study enhanced our understanding of the influencing characteristics of geographic region and tree species on the species and genetic diversity of soilborne fungi.

Climate warming is causing widespread deglaciation and pioneer soil formation over glacial deposits. Melting glaciers expose rocky terrain and glacial till sediment that is relatively low in biomass, oligotrophic, and depleted in nutrients. Following initial colonization by microorganisms, glacial till sediments accumulate organic carbon and nutrients over time. However, the mechanisms driving soil nutrient stabilization during early pedogenesis after glacial retreat remain unclear. Here, we traced amino acid uptake by microorganisms in recently deglaciated high-Arctic soils and show that fungi play a critical role in the initial stabilization of the assimilated carbon. Pioneer basidiomycete yeasts were among the predominant taxa responsible for carbon assimilation, which were associated with overall high amino acid use efficiency and reduced respiration. In intermediate- and late-stage soils, lichenized ascomycete fungi were prevalent, but bacteria increasingly dominated amino acid assimilation, with substantially decreased fungal:bacterial amino acid assimilation ratios and increased respiration. Together, these findings demonstrate that fungi are important drivers of pedogenesis in high-Arctic ecosystems that are currently subject to widespread deglaciation from global warming., Competing Interests: Competing interests statement:The authors declare no competing interest.

Entomopathogenic fungi (EF), who represent active agents to control insect natural populations, usually persist in terrestrial habitats. Southwest area in China has various climate conditions and abundant plant biodiversity (crop, forest, grassy, orchard and arable areas). Nevertheless, the potential of soil-inhabitant EF as insect pest biocontrol agents, is unknown. In this study, first the EF biodiversity from soil of three provinces (Guizhou, Sichuan, and Yunnan) was surveyed. Then, the virulence of 29 isolated strains against Bemesia tabaci and Spodoptera litura was assessed. After analyzing 212 soil samples, 497 isolated fungi were identified. Out of them, 490 isolates were classified in 45 species of 24 genera, whereas the other seven isolates, belonging to Paecilomyces and Purpureocillium genera, were not identified under species level. Furthermore, the EF biodiversity from soil of Sichuan, Yunan, and Guizhou areas, analyzed by Shannon Wiener Index (SWI) was rated at 2.98, 1.89, and 2.14, while SWIs-biodiversity in crop, forest, grassy, orchard and arable areas was rated at 2.88, 2.74, 3.05, 2.39, and 2.47. SWI data suggested that soil from Sichuan area and grassy had higher EF biodiversity compared with other analyzed provinces and areas. Virulence bioassay results indicated that, out of the 29 isolates tested, 24 were pathogenic against B. tabaci and S. litura, resulting in mortality rates >10%. In conclusion, this study reports the EF distribution and biodiversity in soil from three provinces located at Southwest China, whereas their potential use as a tool for the B. tabaci and S. litura biocontrol must be further investigated. [ABSTRACT FROM AUTHOR]

Macadamia (Macadamia integrifolia) is endemic to eastern Australia and produces an edible nut that is widely cultivated in commercial orchards globally. A survey of fungi associated with the grey and green mold symptoms of macadamia flowers found mostly species of Botrytis (Sclerotiniaceae, Leotiomycetes) and Cladosporium (Cladosporiaceae, Dothideomycetes). These isolates included B. cinerea, C. cladosporioides, and unidentified isolates. Amongst the unidentified isolates, one novel species of Botrytis and three novel species of Cladosporium were delimited and characterized by molecular phylogenetic analyses. The new species are Botrytis macadamiae, Cladosporium devikae, C. macadamiae, and C. proteacearum. [ABSTRACT FROM AUTHOR]