1. An Integrative Genomic and Transcriptomic Analysis Reveals Potential Targets Associated with Cell Proliferation in Uterine Leiomyomas
- Author
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Rafael Malagoli Rocha, Igor Jurisica, Priscila Daniele Ramos Cirilo, Anaglória Pontes, Silvia Regina Rogatto, Fabio Albuquerque Marchi, Maria Aparecida Custódio Domingues, Mateus de Camargo Barros Filho, Universidade Estadual Paulista (Unesp), Fundação Antonio Prudente, São Paulo, Universidade de São Paulo (USP), and University Health Network
- Subjects
Microarrays ,data analysis ,lcsh:Medicine ,somatomedin binding protein 5 ,Bioinformatics ,tissue section ,Transcriptome ,transcriptomics ,0302 clinical medicine ,fluids and secretions ,Basic Cancer Research ,tumor gene ,Databases, Genetic ,genetic algorithm ,molecular biology ,Cluster Analysis ,Protein Interaction Maps ,lcsh:Science ,target cell ,Regulation of gene expression ,0303 health sciences ,Multidisciplinary ,Leiomyoma ,fibroblast growth factor receptor 1 ,Reverse Transcriptase Polymerase Chain Reaction ,adult ,myometrium ,Fanconi anemia group A protein ,Obstetrics and Gynecology ,virus diseases ,genetic screening ,Genomics ,Immunohistochemistry ,3. Good health ,Gene Expression Regulation, Neoplastic ,female ,Oncology ,030220 oncology & carcinogenesis ,protein protein interaction ,Cytogenetic Analysis ,Uterine Neoplasms ,Medicine ,Female ,DNA microarray ,BRCA1 protein ,geographic locations ,Research Article ,Signal Transduction ,DNA Copy Number Variations ,comparative genomic hybridization ,Biological Data Management ,Biology ,03 medical and health sciences ,Cytogenetics ,microRNA ,parasitic diseases ,Genetics ,Cancer Genetics ,Hepatic Stellate Cells ,Humans ,human ,Receptor, Fibroblast Growth Factor, Type 1 ,Uterine Neoplasm ,030304 developmental biology ,gene identification ,Cell Proliferation ,Microarray analysis techniques ,human cell ,Gene Expression Profiling ,lcsh:R ,Gynecologic Cancers ,Computational Biology ,Reproducibility of Results ,nucleotide sequence ,Comparative Genomics ,uterus myoma ,Female Subfertility ,major clinical study ,human tissue ,Gene expression profiling ,MicroRNAs ,protein analysis ,tumor marker ,gene expression ,lcsh:Q ,computer model ,microarray analysis ,Genome Expression Analysis ,Insulin-Like Growth Factor Binding Protein 5 ,upregulation ,Comparative genomic hybridization ,Genes, Neoplasm - Abstract
Submitted by Vitor Silverio Rodrigues (vitorsrodrigues@reitoria.unesp.br) on 2014-05-27T11:28:38Z No. of bitstreams: 0Bitstream added on 2014-05-27T14:32:20Z : No. of bitstreams: 1 2-s2.0-84874582462.pdf: 2646107 bytes, checksum: 198eeb5a410105f90919e96a3ab88e1b (MD5) Made available in DSpace on 2014-05-27T11:28:38Z (GMT). No. of bitstreams: 0 Previous issue date: 2013-03-04 Background: Uterine Leiomyomas (ULs) are the most common benign tumours affecting women of reproductive age. ULs represent a major problem in public health, as they are the main indication for hysterectomy. Approximately 40-50% of ULs have non-random cytogenetic abnormalities, and half of ULs may have copy number alterations (CNAs). Gene expression microarrays studies have demonstrated that cell proliferation genes act in response to growth factors and steroids. However, only a few genes mapping to CNAs regions were found to be associated with ULs. Methodology: We applied an integrative analysis using genomic and transcriptomic data to identify the pathways and molecular markers associated with ULs. Fifty-one fresh frozen specimens were evaluated by array CGH (JISTIC) and gene expression microarrays (SAM). The CONEXIC algorithm was applied to integrate the data. Principal Findings: The integrated analysis identified the top 30 significant genes (P
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- 2013