99 results on '"Fumiko Yamamoto"'
Search Results
2. Retrospective Screening of Clinical Samples for Monkeypox Virus DNA, California, USA, 2022
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Caitlin A. Contag, Jacky Lu, Zachary T. Renfro, Abraar Karan, Jorge L. Salinas, Michelle Khan, Daniel Solis, Malaya K. Sahoo, Fumiko Yamamoto, and Benjamin A. Pinsky
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mpox ,monkeypox virus ,viruses ,sexually transmitted infections ,zoonoses ,orthopoxvirus ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
We retrospectively screened oropharyngeal and rectal swab samples originally collected in California, USA, for Chlamydia trachomatis and Neisseria gonorrhoeae testing for the presence of monkeypox virus DNA. Among 206 patients screened, 17 (8%) had samples with detectable viral DNA. Monkeypox virus testing from mucosal sites should be considered for at-risk patients.
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- 2023
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3. Multiplex Epstein-Barr virus BALF2 genotyping detects high-risk variants in plasma for population screening of nasopharyngeal carcinoma
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Jacob A. Miller, Malaya K. Sahoo, Fumiko Yamamoto, ChunHong Huang, Hannah Wang, James L. Zehnder, Quynh-Thu Le, and Benjamin A. Pinsky
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Nasopharyngeal carcinoma ,Epstein-Barr virus ,Cancer screening ,Plasma ,BALF2 ,Cost-effectiveness ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Epstein-Barr Virus (EBV)-associated nasopharyngeal carcinoma (NPC) exhibits unusual geographic restriction despite ubiquitous lifelong infection. Screening programs can detect most NPC cases at an early stage, but existing EBV diagnostics are limited by false positives and low positive predictive value (PPV), leading to excess screening endoscopies, MRIs, and repeated testing. Recent EBV genome-wide association studies (GWAS) suggest that EBV BALF2 variants account for more than 80% of attributable NPC risk. We therefore hypothesized that high-risk BALF2 variants could be readily detected in plasma for once-lifetime screening triage. Methods We designed and validated a multiplex genotyping assay to detect EBV BALF2 polymorphisms in human plasma. Targeted next-generation sequencing was used to validate this assay, conduct association studies with clinical phenotype, and longitudinally genotype plasma to assess within-host haplotype stability. We examined the association between NPC and BALF2 haplotypes in a large non-endemic population and three prior EBV GWAS. Finally, we estimated NPC mortality reduction, resource utilization, and cost-effectiveness of BALF2 variant-informed screening using a previously-validated cohort model. Results Following analytical validation, the BALF2 genotyping assay had 99.3% concordance with sequencing in a cohort of 24 NPC cases and 155 non-NPC controls. BALF2 haplotype was highly associated with NPC in this non-endemic population (I613V: odds ratio [OR] 7.9; V317M: OR 178.8). No other candidate BALF2 polymorphisms were significantly associated with NPC or hematologic disorders. Longitudinal genotyping revealed 97.8% within-host haplotype concordance, indicative of lifelong latent infection. In a meta-analysis of 755 NPC cases and 981 non-NPC controls, BALF2 I613V and V317M were significantly associated with NPC in both endemic and non-endemic populations. Modeled variant-informed screening strategies achieved a 46% relative increase in PPV with 7% decrease in effective screening sensitivity, thereby averting nearly half of screening endoscopies/MRIs among endemic populations in east/southeast Asia. Conclusions EBV BALF2 haplotypes are temporally stable within hosts and can be readily detected in plasma via an inexpensive multiplex genotyping assay that offers near-perfect sequencing concordance. In endemic and non-endemic populations, I613V and V317M were highly associated with NPC and could be leveraged to develop variant-informed screening programs that mitigate false positives with small reductions in screening sensitivity.
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- 2022
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4. Two cases of MPXV infection during pregnancy in heterosexual cisgender women without classic cutaneous lesions, Northern California, 2022
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Zachary T. Renfro, Caitlin A. Contag, Jacky Lu, Daniel Solis, ChunHong Huang, Malaya K. Sahoo, Fumiko Yamamoto, Jordan Mah, Morris S. Jones, Jennifer Lin, Vivian Levy, and Benjamin A. Pinsky
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Monkeypox ,MPXV ,mpox ,Pregnancy ,Chorioamnionitis ,Infectious and parasitic diseases ,RC109-216 - Abstract
As part of an epidemiologic survey, we screened remnant samples collected for STI testing for mpox virus. We identified two cases of presumed MPXV infection in pregnant, heterosexual cisgender women. Here, we describe their pregnancy and birth outcomes. Both patients required induction of labor and experienced labor complicated by chorioamnionitis.
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- 2023
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5. SARS-CoV-2 Neutralization Resistance Mutations in Patient with HIV/AIDS, California, USA
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Seth A. Hoffman, Cristina Costales, Malaya K. Sahoo, Srikanth Palanisamy, Fumiko Yamamoto, ChunHong Huang, Michelle Verghese, Daniel A. Solis, Mamdouh Sibai, Aruna Subramanian, Lucy S. Tompkins, Philip Grant, Robert W. Shafer, and Benjamin A. Pinsky
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SARS-CoV-2 ,HIV/AIDS ,viral evolution ,immunocompromised ,COVID-19 ,respiratory infections ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
We report persistent severe acute respiratory syndrome coronavirus 2 infection in a patient with HIV/AIDS; the virus developed spike N terminal domain and receptor binding domain neutralization resistance mutations. Our findings suggest that immunocompromised patients can harbor emerging variants of severe acute respiratory syndrome coronavirus 2.
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- 2021
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6. Characterizing the Severity of SARS-CoV-2 Variants at a Single Pediatric Center
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Aslam Khan, Caroline Ichura, Hannah Wang, Izabela Rezende, Malaya K. Sahoo, ChunHong Huang, Daniel Solis, Mamdouh Sibai, Fumiko Yamamoto, Sindiso Nyathi, Bethel Bayrau, Benjamin A. Pinsky, and A. Desiree LaBeaud
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pediatrics ,SARS-CoV-2 ,COVID-19 ,severity ,variants ,SARS-COV-2 variants ,Medicine (General) ,R5-920 - Abstract
Since March 2020, SARS-CoV-2 has plagued the world with COVID-19 and individuals of all ages have experienced varying symptoms of disease. Older adults were experiencing more severe disease compared to children and were prioritized by vaccination efforts. While biologic therapies and vaccinations were implemented, there were changes in public health restrictions with subsequent surges resulting in more infected children. During these surges there was a rise of different SARS-CoV-2 variants with the dominant variant initially alpha (B.1.1.7 and other Pango lineages) and epsilon (B.1.427/B.1.429) in early 2021 and a dramatic shift to delta (B.1.617.2 and other Pango lineages) by mid-summer 2021. In this study we aimed to characterize the clinical severity and host factors associated with disease by SARS-CoV-2 variant and evaluate if there are differences in disease severity by circulating variant. We retrospectively included all individuals 0–25 years of age who presented to our center and had a positive SARS-CoV-2 RT-PCR, SARS-CoV-2 variant mutation testing, and documented clinical notes from 1 January 2021 through 31 December 2021. We identified 745 individuals who met inclusion criteria and found the delta variant was associated with severe/critical disease compared to the other variants studied. The results of the model showed that underlying respiratory disease and diabetes were risk factors for progression to severe disease. These insights are important when evaluating public health measures and treatment options for children as more variants arise.
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- 2022
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7. Effect of adding magnifying BLI, magnifying NBI, and iodine staining to white light imaging in diagnosis of early esophageal cancer
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Kenro Kawada, Miwako Arima, Ryoji Miyahara, Mika Tsunomiya, Masakazu Kikuchi, Fumiko Yamamoto, Akihiro Hoshino, Yasuaki Nakajima, Yusuke Kinugasa, and Tatsuyuki Kawano
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Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Background and study aims We investigated the effect of adding magnifying blue laser imaging (BLI), magnifying narrow-band imaging (NBI), and iodine staining to white light imaging in diagnosis of early esophageal squamous cell carcinoma (EESCC) in high-risk patients. Patients and methods Between May 2013 and March 2016, two parallel prospective cohorts of patients received either primary WLI followed by NBI-magnifying endoscopy (ME) or primary WLI followed by BLI-ME, were studied. At the end of screening, both groups underwent iodine staining. The percentage of patients with newly detected esophageal malignant lesions in each group and the diagnostic ability of image-enhanced endoscopy (IEE)-ME were evaluated. Results There are 258 patients assigned to the NBI-ME group and 254 patients assigned to the BLI-ME group. The percentage of patients with one or more malignant lesions detected in the WLI + NBI-ME examination was similar in the WLI + BLI-ME examination (15 of 258 patients or 5.81 % vs. 14 of 254 patients or 5.51 %). However, four of 19 lesions in the NBI-ME group and six of 21 lesions in the BLI-ME group were overlooked and were detected by iodine staining. NBI-ME and BLI-ME showed similar accuracy in differentiation of cancerous lesions from non-cancerous lesions in diagnosis of EESCC (NBI/BLI: sensitivity, 87.5/89.5; specificity, 78.9/76.6; accuracy, 80.8/79.5; positive predictive value, 53.8/53.1; negative predictive value, 95.7/96.1). Conclusions Both NBI and BLI were useful for detection of EESCC. However, because some lesions were overlooked by even NBI and BLI, high-risk patients may benefit from use of iodine staining during endoscopic screening of EESCC (UMIN000023596).
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- 2021
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8. Probable progressive multifocal leukoencephalopathy-immune reconstitution inflammatory syndrome with immunosuppressant dose reduction following lung transplantation: a case report and literature review
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Kazuhiro Ishii, Fumiko Yamamoto, Shinsuke Homma, Yoshinori Okada, Kazuo Nakamichi, Masayuki Saijo, and Akira Tamaoka
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Progressive multifocal leukoencephalopathy ,Mefloquine ,CD4 positive cell ,JC polyomavirus ,Lung transplantation ,Immune reconstitution inflammatory syndrome ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background Progressive multifocal leukoencephalopathy (PML) is a rapidly developing demyelinating disease in the cerebral white matter and is often caused by JC polyomavirus (JCV). PML after lung transplantation is rare and has a poor prognosis, with no established therapies. Reducing the patient’s immunosuppressant doses, thereby restoring immunity, could be used to treat PML. However, some patients develop immune reconstitution inflammatory syndrome (IRIS) with this treatment, an immune-induced inflammatory response to JCV that results in serious neuronal damage. We herein report a case of a 60-year-old female who suffered from PML 5 years after lung transplantation, had worsened brain lesions thought to be related to PML-IRIS at the time of immunosuppressant reduction, and missed treatment opportunities. Case presentation A 60-year-old female developed PML 5 years after lung transplantation. Fluid-attenuated inversion recovery and diffusion-weighted brain magnetic resonance imaging (MRI) revealed multiple high-signal lesions, mainly in the cerebral white matter. Polymerase chain reaction found 0.32 million copies/mL of JCV in the cerebrospinal fluid. Thus, she was given a diagnosis of PML. Mycophenolate mofetil and tacrolimus dosages were reduced, and CD4-positive cell counts and the blood concentration of each immunosuppressant were monitored. Mefloquine was also orally administered at a daily dose of 275 mg for 3 days and was then administered at a dose of 275 mg per week. Although the patient’s CD4-positive cell counts increased and her immune system recovered, her symptoms and brain MRI findings worsened. We suspected PML progression or a transition to PML-IRIS. Steroid pulse therapy to suppress the inflammatory lesions was not possible but was retrospectively indicated. The patient rapidly began to exhibit akinetic mutism and died 4 months after the onset of neurologic symptoms. Conclusions When neurologic symptoms and abnormal brain MRI findings are noted during immune recovery, it is often difficult to distinguish between progressed PML and PML-IRIS. However, the pathogenesis of brain lesions usually involves inflammation and immune-reactive mechanisms for JCV. Steroid pulse therapy, which can reduce inflammation, should thus be administered in organ transplantation cases with differential diagnoses including PML-IRIS.
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- 2019
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9. Capturing Differential Allele-Level Expression and Genotypes of All Classical HLA Loci and Haplotypes by a New Capture RNA-Seq Method
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Fumiko Yamamoto, Shingo Suzuki, Akiko Mizutani, Atsuko Shigenari, Sayaka Ito, Yoshie Kametani, Shunichi Kato, Marcelo Fernandez-Viña, Makoto Murata, Satoko Morishima, Yasuo Morishima, Masafumi Tanaka, Jerzy K. Kulski, Seiamak Bahram, and Takashi Shiina
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human leukocyte antigen ,next-generation sequencing ,HLA allele ,RNA expression level ,genotyping ,capture RNA-Seq ,Immunologic diseases. Allergy ,RC581-607 - Abstract
The highly polymorphic human major histocompatibility complex (MHC) also known as the human leukocyte antigen (HLA) encodes class I and II genes that are the cornerstone of the adaptive immune system. Their unique diversity (>25,000 alleles) might affect the outcome of any transplant, infection, and susceptibility to autoimmune diseases. The recent rapid development of new next-generation sequencing (NGS) methods provides the opportunity to study the influence/correlation of this high level of HLA diversity on allele expression levels in health and disease. Here, we describe the NGS capture RNA-Seq method that we developed for genotyping all 12 classical HLA loci (HLA-A, HLA-B, HLA-C, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, HLA-DRB3, HLA-DRB4, and HLA-DRB5) and assessing their allelic imbalance by quantifying their allele RNA levels. This is a target enrichment method where total RNA is converted to a sequencing-ready complementary DNA (cDNA) library and hybridized to a complex pool of RNA-specific HLA biotinylated oligonucleotide capture probes, prior to NGS. This method was applied to 161 peripheral blood mononuclear cells and 48 umbilical cord blood cells of healthy donors. The differential allelic expression of 10 HLA loci (except for HLA-DRA and HLA-DPA1) showed strong significant differences (P < 2.1 × 10−15). The results were corroborated by independent methods. This newly developed NGS method could be applied to a wide range of biological and medical questions including graft rejections and HLA-related diseases.
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- 2020
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10. Vestibular Impairment in Frontotemporal Dementia Syndrome
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Kiyotaka Nakamagoe, Kotarou Kadono, Tadachika Koganezawa, Mao Takiguchi, Makoto Terada, Fumiko Yamamoto, Tetsuya Moriyama, Kumi Yanagiha, Seitaro Nohara, Naoki Tozaka, Zenshi Miyake, Satoshi Aizawa, Kentaro Furusho, and Akira Tamaoka
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Vestibular function ,Frontotemporal lobar degeneration ,Vestibular stimulation ,Frontal eye field ,Inferior parietal lobule ,Caloric test ,Visual suppression ,Frontotemporal dementia ,Neurology. Diseases of the nervous system ,RC346-429 ,Geriatrics ,RC952-954.6 - Abstract
Background: No studies to date have attempted to evaluate frontotemporal lobar degeneration from the perspective of the vestibular system. Objective: The present study examined vestibular function in patients with frontotemporal dementia (FTD) clinical syndrome and evaluated whether vestibular disorders are involved in the clinical symptoms due to FTD. Methods: Fourteen patients with FTD syndrome, as well as healthy elderly controls without dementia, were included in the present study. All subjects underwent vestibular function tests using electronystagmography, such as caloric tests and visual suppression (VS) tests, in which the induced caloric nystagmus was suppressed by visual stimuli. The association between clinical symptoms and vestibular function in the FTD syndrome group was further examined. Results: In the FTD syndrome group, caloric nystagmus was not necessarily suppressed during VS tests. Furthermore, VS was observed to be significantly impaired in FTD syndrome patients with gait disturbance as compared to those without such disturbance. Conclusion: The present study revealed that impairment of VS in patients with FTD results in an inability to regulate vestibular function by means of visual perception, regardless of multiple presumed neuropathological backgrounds. This could also be associated with gait disturbance in patients with FTD syndrome.
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- 2016
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11. Cerebral Venous Air Embolism due to a Hidden Skull Fracture Secondary to Head Trauma
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Ai Hosaka, Tetsuto Yamaguchi, Fumiko Yamamoto, and Yasuro Shibagaki
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Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Cerebral venous air embolism is sometimes caused by head trauma. One of the paths of air entry is considered a skull fracture. We report a case of cerebral venous air embolism following head trauma. The patient was a 55-year-old man who fell and hit his head. A head computed tomography (CT) scan showed the air in the superior sagittal sinus; however, no skull fractures were detected. Follow-up CT revealed a fracture line in the right temporal bone. Cerebral venous air embolism following head trauma might have occult skull fractures even if CT could not show the skull fractures.
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- 2015
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12. Multiplex Dual-Target Reverse Transcription PCR for Subtyping Avian Influenza A(H5) Virus.
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Sahoo, Malaya K., Morante, Ingrid E. A., ChunHong Huang, Solis, Daniel, Fumiko Yamamoto, Ohiri, Uzoamaka C., Romero, Daniel, and Pinsky, Benjamin A.
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AVIAN influenza ,GENETIC transcription ,INFLUENZA - Abstract
An increased risk for human infection with avian influenza A(H5N1) viruses is of concern. We developed an internally controlled, dual-target reverse transcription PCR for influenza A(H5) subtyping. This test could be used to detect influenza A(H5) in clinical samples. [ABSTRACT FROM AUTHOR]
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- 2024
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13. Comparison of Real-Time PCR and Digital PCR for Detection of Plasma Epstein-Barr Virus DNA in Nasopharyngeal Carcinoma
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Jacob A. Miller, ChunHong Huang, Fumiko Yamamoto, Malaya K. Sahoo, Quynh-Thu Le, and Benjamin A. Pinsky
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Molecular Medicine ,Pathology and Forensic Medicine - Published
- 2023
14. Neutralization against BA.2.75.2, BQ.1.1, and XBB from mRNA Bivalent Booster
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Meredith E. Davis-Gardner, Lilin Lai, Bushra Wali, Hady Samaha, Daniel Solis, Matthew Lee, Andrea Porter-Morrison, Ian T. Hentenaar, Fumiko Yamamoto, Sucheta Godbole, Yuan Liu, Daniel C. Douek, Frances Eun-Hyung Lee, Nadine Rouphael, Alberto Moreno, Benjamin A. Pinsky, and Mehul S. Suthar
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General Medicine - Published
- 2022
15. SARS-CoV-2 Nucleocapsid Plasma Antigen for Diagnosis and Monitoring of COVID-19
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Daniel Solis, Bryan A. Stevens, James L. Zehnder, Scott D. Boyd, Hannah Wang, Malaya K. Sahoo, Benjamin A. Pinsky, Mamdouh Sibai, Fumiko Yamamoto, Katharina Röltgen, Michelle Verghese, Catherine A. Hogan, and ChunHong Huang
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medicine.medical_specialty ,Coronavirus disease 2019 (COVID-19) ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Clinical Biochemistry ,Logistic regression ,Sensitivity and Specificity ,Gastroenterology ,Article ,law.invention ,COVID-19 Testing ,Antigen ,law ,Diabetes mellitus ,Intensive care ,Internal medicine ,medicine ,Coronavirus Nucleocapsid Proteins ,Humans ,Respiratory system ,Nucleocapsid ,Antigens, Viral ,Immunoassay ,SARS-CoV-2 ,business.industry ,Biochemistry (medical) ,COVID-19 ,Electrochemical Techniques ,AcademicSubjects/SCI01290 ,Phosphoproteins ,medicine.disease ,Intensive care unit ,Hospitalization ,Luminescent Measurements ,AcademicSubjects/MED00530 ,AcademicSubjects/SCI00980 ,business ,AcademicSubjects/MED00690 - Abstract
Background Detection of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) nucleocapsid antigen in blood has been described, but the diagnostic and prognostic role of antigenemia is not well understood. This study aimed to determine the frequency, duration, and concentration of nucleocapsid antigen in plasma and its association with coronavirus disease 2019 (COVID-19) severity. Methods We utilized an ultrasensitive electrochemiluminescence immunoassay targeting SARS-CoV-2 nucleocapsid antigen to evaluate 777 plasma samples from 104 individuals with COVID-19. We compared plasma antigen to respiratory nucleic acid amplification testing (NAAT) in 74 individuals with COVID-19 from samples collected ±1 day of diagnostic respiratory NAAT and in 52 SARS-CoV-2–negative individuals. We used Kruskal–Wallis tests, multivariable logistic regression, and mixed-effects modeling to evaluate whether plasma antigen concentration was associated with disease severity. Results Plasma antigen had 91.9% (95% CI 83.2%–97.0%) clinical sensitivity and 94.2% (84.1%–98.8%) clinical specificity. Antigen-negative plasma samples belonged to patients with later respiratory cycle thresholds (Ct) when compared with antigen-positive plasma samples. Median plasma antigen concentration (log10 fg/mL) was 5.4 (interquartile range 3.9–6.0) in outpatients, 6.0 (5.4–6.5) in inpatients, and 6.6 (6.1–7.2) in intensive care unit (ICU) patients. In models adjusted for age, sex, diabetes, and hypertension, plasma antigen concentration at diagnosis was associated with ICU admission [odds ratio 2.8 (95% CI 1.2–6.2), P=.01] but not with non-ICU hospitalization. Rate of antigen decrease was not associated with disease severity. Conclusions SARS-CoV-2 plasma nucleocapsid antigen exhibited comparable diagnostic performance to upper respiratory NAAT, especially among those with late respiratory Ct. In addition to currently available tools, antigenemia may facilitate patient triage to optimize intensive care utilization.
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- 2021
16. mRNA bivalent booster enhances neutralization against BA.2.75.2 and BQ.1.1
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Meredith E. Davis-Gardner, Lilin Lai, Bushra Wali, Hady Samaha, Daniel Solis, Matthew Lee, Andrea Porter-Morrison, Ian Thomas Hentenaar, Fumiko Yamamoto, Sucheta Godbole, Daniel C. Douek, Frances Eun-Hyung Lee, Nadine Rouphael, Alberto Moreno, Benjamin A. Pinsky, and Mehul S. Suthar
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Article - Abstract
The emergence of the highly divergent SARS-CoV-2 Omicron variant has jeopardized the efficacy of vaccines based on the ancestral spike. The bivalent COVID-19 mRNA booster vaccine within the United States is comprised of the ancestral and the Omicron BA.5 spike. Since its approval and distribution, additional Omicron subvariants have been identified with key mutations within the spike protein receptor binding domain that are predicted to escape vaccine sera. Of particular concern is the R346T mutation which has arisen in multiple subvariants, including BA.2.75.2 and BQ.1.1. Using a live virus neutralization assay, we evaluated serum samples from individuals who had received either one or two monovalent boosters or the bivalent booster to determine neutralizing activity against wild-type (WA1/2020) virus and Omicron subvariants BA.1, BA.5, BA.2.75.2, and BQ.1.1. In the one monovalent booster cohort, relative to WA1/2020, we observed a reduction in neutralization titers of 9-15-fold against BA.1 and BA.5 and 28-39-fold against BA.2.75.2 and BQ.1.1. In the BA.5-containing bivalent booster cohort, the neutralizing activity improved against all the Omicron subvariants. Relative to WA1/2020, we observed a reduction in neutralization titers of 3.7- and 4-fold against BA.1 and BA.5, respectively, and 11.5- and 21-fold against BA.2.75.2 and BQ.1.1, respectively. These data suggest that the bivalent mRNA booster vaccine broadens humoral immunity against the Omicron subvariants.
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- 2022
17. Prevalence of Mpox (Monkeypox) in patients undergoing STI screening in northern California, April-September 2022
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Caitlin A. Contag, Zachary T. Renfro, Jacky Lu, Sa Shen, Abraar Karan, Daniel Solis, ChunHong Huang, Malaya K. Sahoo, Fumiko Yamamoto, Morris S. Jones, Jennifer Lin, Vivian Levy, and Benjamin A. Pinsky
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Infectious Diseases ,Virology - Published
- 2023
18. Effects of anti-diabetes medications on cardiovascular and kidney outcomes in Asian patients with type 2 diabetes: a rapid evidence assessment and narrative synthesis
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Yusuke Naito, Tomoo Okamura, Yusuke Taneda, Søren S Lund, Douglas Clark, Fumiko Yamamoto, Kohei Kaku, and Takashi Kadowaki
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Blood Glucose ,medicine.medical_specialty ,Type 2 diabetes ,030204 cardiovascular system & hematology ,Glucagon-Like Peptide-1 Receptor ,03 medical and health sciences ,0302 clinical medicine ,Asian People ,Internal medicine ,Diabetes mellitus ,medicine ,Humans ,Hypoglycemic Agents ,Pharmacology (medical) ,Narrative ,Sodium-Glucose Transporter 2 Inhibitors ,Randomized Controlled Trials as Topic ,Dipeptidyl-Peptidase IV Inhibitors ,Kidney ,business.industry ,General Medicine ,medicine.disease ,medicine.anatomical_structure ,Diabetes Mellitus, Type 2 ,Cardiovascular Diseases ,030220 oncology & carcinogenesis ,Kidney Diseases ,business - Abstract
The cardiovascular and kidney safety of glucose-lowering drugs is a key concern in type 2 diabetes (T2D). We evaluated cardiorenal outcomes with glucose-lowering drugs in Asian patients, who comprise over half of T2D cases globally.A rapid evidence assessment was conducted for phase III or IV, double-blind, randomized clinical trials of glucose-lowering drugs reporting cardiovascular or kidney outcomes for Asian T2D patients (Embase, Medline, Cochrane Library databases: 1 January 2008-14 June 2020).Fifty-four publications reported exploratory data for Asians from 18 trials of dipeptidyl peptidase-4 (DPP-4) inhibitors, sodium-glucose co-transporter-2 (SGLT2) inhibitors, glucagon-like peptide-1 (GLP-1) receptor agonists, and insulin analogs. SGLT2 inhibitors and several GLP-1 receptor agonists were associated with reduced cardiovascular risk in Asian T2D patients, while DPP-4 inhibitors exhibited cardiovascular safety. SGLT2 inhibitors also appeared to reduce renal risk; however, kidney outcomes were lacking for DPP-4 inhibitors other than linagliptin and GLP-1 receptor agonists in Asian patients. Insulin data were inconclusive as the only trial conducted used different types of insulin as both treatment and comparator.Cardiorenal outcomes with glucose-lowering drugs in Asian T2D patients were similar to outcomes in the overall multinational cohorts of these trials. DPP-4 inhibitors appear to demonstrate cardiovascular safety in Asians, while SGLT2 inhibitors and some GLP-1 receptor agonists may reduce cardiorenal and cardiovascular risk, respectively.
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- 2021
19. Evaluation of a multiplexed oligonucleotide ligation assay for SARS-CoV-2 variant identification
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Daniel Solis, Mamdouh Sibai, Faith Kung, Timothy J. Break, Seth B. Harkins, ChunHong Huang, Fumiko Yamamoto, Malaya K. Sahoo, Jacob N. Wohlstadter, George B. Sigal, and Benjamin A. Pinsky
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Infectious Diseases ,Virology - Published
- 2023
20. Evaluation of a Rapid and Accessible Reverse Transcription-Quantitative PCR Approach for SARS-CoV-2 Variant of Concern Identification
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Priscilla S.-W. Yeung, Hannah Wang, Mamdouh Sibai, Daniel Solis, Fumiko Yamamoto, Naomi Iwai, Becky Jiang, Nathan Hammond, Bernadette Truong, Selamawit Bihon, Suzette Santos, Marilyn Mar, Claire Mai, Kenji O. Mfuh, Jacob A. Miller, ChunHong Huang, Malaya K. Sahoo, James L. Zehnder, and Benjamin A. Pinsky
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Microbiology (medical) ,SARS-CoV-2 ,Mutation ,Spike Glycoprotein, Coronavirus ,COVID-19 ,Humans ,Reverse Transcription ,Real-Time Polymerase Chain Reaction ,Multiplex Polymerase Chain Reaction - Abstract
The ability to distinguish between severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants of concern (VOCs) is of ongoing interest due to differences in transmissibility, responses to vaccination, clinical prognosis, and therapy. Although detailed genetic characterization requires whole-genome sequencing (WGS), targeted nucleic acid amplification tests can serve a complementary role in clinical settings, as they are more rapid and accessible than sequencing in most laboratories. We designed and analytically validated a two-reaction multiplex reverse transcription-quantitative PCR (RT-qPCR) assay targeting spike protein mutations L452R, E484K, and N501Y in reaction 1 and del69-70, K417N, and T478K in reaction 2. This assay had 95 to 100% agreement with WGS for 502 upper respiratory tract swab samples collected between 26 April 2021 and 1 August 2021, consisting of 43 Alpha, 2 Beta, 20 Gamma, 378 Delta, and 59 non-VOC infections. Validation in a separate group of 230 WGS-confirmed Omicron variant samples collected in December 2021 and January 2022 demonstrated 100% agreement. This RT-qPCR-based approach can be implemented in clinical laboratories already performing SARS-CoV-2 nucleic acid amplification tests to assist in local epidemiological surveillance and clinical decision-making.
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- 2022
21. Long-term safety and effectiveness of linagliptin by baseline body mass index in Japanese patients with type 2 diabetes: a 3-year post-marketing surveillance study
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Daisuke Yabe, Fumiko Yamamoto, Søren S. Lund, Tomoo Okamura, and Takashi Kadowaki
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Glycated Hemoglobin ,Diabetes Mellitus, Type 2 ,Japan ,Product Surveillance, Postmarketing ,nutritional and metabolic diseases ,Humans ,Pharmacology (medical) ,Linagliptin ,General Medicine ,Body Mass Index - Abstract
A recent 3-year post-marketing surveillance (PMS) study reaffirmed the safety and effectiveness of linagliptin in linagliptin-naïve Japanese patients with type 2 diabetes (T2D). We present further analyses from this study by body mass index (BMI). Safety and effectiveness were assessed across BMI subgroups (2). Data were available for 876, 566, and 201 patients in the BMI subgroups, respectively. Incidence of adverse drug reactions [ADR] with linagliptin was 11.42%, 11.31%, 10.45%, respectively. The most common ADR of special interest was hepatic disorders (n [%]: 6 [0.68], 7 [1.24], and 3 [1.49], respectively). Additional use of glucose-lowering drugs (GLDs) increased with BMI (15.0%, 19.1%, 24.4% of patients; P < 0.001). In the overall population, HbA1c change (adjusted mean %±SE) until week 156 was –0.71±0.04, –0.68±0.04 and –0.74±0.09. In patients receiving linagliptin with no additional GLDs, HbA1c changes were –0.58%±0.04, –0.62%±0.04, and –0.77%±0.11. In this study of linagliptin in Japanese patients with T2D, across BMI subgroups no new safety concerns were observed. The proportion of patients with additional GLD use increased with baseline BMI. Decreases in HbA1c were observed in all subgroups, including in patients with no additional GLD use. NCT01650259
- Published
- 2022
22. Cost-Effectiveness Analysis of Linagliptin in Japan Based on Results from the Asian Subpopulation in the CARMELINA® Trial
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Keigo Hanada, Tetsuaki Hirase, Hirotaka Watada, Tatsunori Murata, Daisuke Yabe, Tomoo Okamura, Fumiko Yamamoto, and Hiroyuki Sakamaki
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Standard of care ,CARMELINA trial ,Endocrinology, Diabetes and Metabolism ,Linagliptin ,030209 endocrinology & metabolism ,MACE ,Cardiorenal events ,030204 cardiovascular system & hematology ,Public healthcare ,DPP4 inhibitor ,QALY ,03 medical and health sciences ,Indirect costs ,0302 clinical medicine ,Japan ,Microsimulation model ,Statistics ,Internal Medicine ,Medicine ,Sensitivity analyses ,health care economics and organizations ,Original Research ,ICER ,business.industry ,Cost-effectiveness analysis ,Diabetes ,Hazard ratio ,business ,medicine.drug - Abstract
Introduction We evaluated the cost-effectiveness of linagliptin in Japan by estimating the lifetime outcome based on clinical event rates from the Asian subpopulation of the CARMELINA trial. In CARMELINA, linagliptin added to standard of care (SoC) versus SoC demonstrated noninferiority with regard to risk of composite cardiovascular (CV) outcome in patients with type 2 diabetes at high risk of CV and kidney events. Issues resulting from conducting a cost-effectiveness analysis using data from a clinical noninferiority study were also investigated. Methods A microsimulation model was used to evaluate linagliptin/SoC versus SoC in terms of direct costs and quality-adjusted life years (QALYs) from a Japanese public healthcare payer’s perspective. Cost data were obtained from recent Japanese publications. The time horizon was defined as lifetime, and the discount rate for costs and effectiveness was 2% per year. One-way and probabilistic sensitivity analyses were performed. Results In the base case analysis, and taking medical history into account, the incremental effectiveness of linagliptin/SoC versus SoC was 1.34 QALYs, and the incremental cost for linagliptin was − 545,319 yen. In the one-way sensitivity analysis, the parameter which most affected the results was the hazard ratio for renal failure of linagliptin/SoC compared with SoC. The probabilistic sensitivity analysis showed that the probability of reduced costs and increased effectiveness (dominant) was 48%. Assuming an incremental cost-effectiveness ratio (ICER) threshold of 5 million yen, the probability that the ICER was below the threshold was 89% for linagliptin/SoC compared with SoC. Conclusions This evaluation, using Asian subpopulation data from the CARMELINA trial, suggested that the cost-effectiveness of linagliptin for a lifetime outcome was favourable in Japan. However, the results must be interpreted cautiously because of the noninferiority trial data source, which might cause ICER variations for each parameter. Electronic Supplementary Material The online version of this article (10.1007/s13300-020-00852-8) contains supplementary material, which is available to authorized users.
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- 2020
23. Evaluation of a Rapid and Accessible RT-qPCR Approach for SARS-CoV-2 Variant of Concern Identification
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Priscilla S.-W. Yeung, Hannah Wang, Mamdouh Sibai, Daniel Solis, Fumiko Yamamoto, Naomi Iwai, Becky Jiang, Nathan Hammond, Bernadette Truong, Selamawit Bihon, Suzette Santos, Marilyn Mar, Claire Mai, Kenji O. Mfuh, Jacob A. Miller, ChunHong Huang, Malaya K. Sahoo, James L. Zehnder, and Benjamin A. Pinsky
- Abstract
The ability to distinguish between SARS-CoV-2 variants of concern (VOCs) is of ongoing interest due to differences in transmissibility, response to vaccination, clinical prognosis, and therapy. Although detailed genetic characterization requires whole-genome sequencing (WGS), targeted nucleic acid amplification tests can serve a complementary role in clinical settings, as they are more rapid and accessible than sequencing in most laboratories.We designed and analytically validated a two-reaction multiplex reverse transcription quantitative PCR (RT-qPCR) assay targeting spike protein mutations L452R, E484K, and N501Y in Reaction 1, and del69-70, K417N, and T478K in Reaction 2. This assay had 95-100% agreement with WGS in 502 upper respiratory swabs collected between April 26 and August 1, 2021, consisting of 43 Alpha, 2 Beta, 20 Gamma, 378 Delta, and 59 non-VOC infections. Validation in a separate group of 230 WGS-confirmed Omicron variant samples collected in December 2021 and January 2022 demonstrated 100% agreement.This RT-qPCR-based approach can be implemented in clinical laboratories already performing SARS-CoV-2 nucleic acid amplification tests to assist in local epidemiological surveillance and clinical decision-making.
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- 2022
24. Development and Evaluation of an RT-qPCR for the Identification of the SARS-CoV-2 Omicron Variant
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Mamdouh Sibai, Hannah Wang, Priscilla S-W Yeung, Malaya K. Sahoo, Daniel Solis, Kenji O. Mfuh, ChunHong Huang, Fumiko Yamamoto, and Benjamin A. Pinsky
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Infectious Diseases ,SARS-CoV-2 ,Virology ,COVID-19 ,Humans ,Real-Time Polymerase Chain Reaction ,Article - Published
- 2022
25. Amyloid-β oligomers interact with NMDA receptors containing GluN2B subunits and metabotropic glutamate receptor 1 in primary cortical neurons: Relevance to the synapse pathology of Alzheimer's disease
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Kaori Taniguchi, Fumiko Yamamoto, Akiko Amano, Akira Tamaoka, Nobuo Sanjo, Takanori Yokota, Fuyuki Kametani, and Wataru Araki
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Neurons ,Amyloid beta-Peptides ,Alzheimer Disease ,General Neuroscience ,Synapses ,Animals ,General Medicine ,Receptors, Metabotropic Glutamate ,Receptors, N-Methyl-D-Aspartate ,Rats - Abstract
Recent evidence suggests that soluble amyloid-β oligomers (AβOs) act as a key factor in the pathogenetic mechanism of Alzheimer's disease (AD). AβOs induce neurotoxic and synaptotoxic effects probably through binding to certain receptors, however it remains unclarified which receptors are most critically involved. In addition, dysregulation in glutamatergic signaling is implicated in AD. In this study, we used a rat primary cortical neuron model to investigate AβO-induced aberrations of synaptic proteins and binding of extracellular AβOs to candidate receptors in the glutamatergic system. Immunocytochemical analyses showed that both presynaptic (SNAP-25, synapsin I) and postsynaptic (spinophilin, homer 1b/c) proteins appeared to aberrantly dislocate from synapses upon AβO treatment. Double immunofluorescence staining of AβO-treated neurons without permeabilization pretreatment revealed that extracellular AβOs exist over neuronal soma and neurites and clearly colocalized with GluN1 and GluN2B subunits of NMDA receptors and metabotropic glutamate receptor 1 (mGluR1), but not with NMDA GluN2A subunits and mGluR5. AβO treatment altered neither total protein levels nor intracellular localizations of these receptors. These results suggest that extracellular AβOs specifically bind to both NMDA receptors containing GluN2B subunits and mGluR1. It is likely that binding of AβOs to these receptors induces various pathological responses, consequently leading to synaptic disruptions. Our study thus highlights the important roles of GluN2B-containing NMDA receptors and mGluR1 receptors in the synapse pathology in AD.
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- 2021
26. SARS-CoV-2 Neutralization Resistance Mutations in Patient with HIV/AIDS, California, USA
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Philip M. Grant, ChunHong Huang, Cristina Costales, Srikanth Palanisamy, Michelle Verghese, Benjamin A. Pinsky, Aruna Subramanian, Robert W. Shafer, Daniel A Solis, Fumiko Yamamoto, Lucy S. Tompkins, Malaya K. Sahoo, Mamdouh Sibai, and Seth A Hoffman
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Microbiology (medical) ,Epidemiology ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,viruses ,coronaviruses ,Infectious and parasitic diseases ,RC109-216 ,macromolecular substances ,medicine.disease_cause ,Virus ,Neutralization ,California ,2019 novel coronavirus disease ,viral evolution ,respiratory infections ,Antibiotic resistance ,Acquired immunodeficiency syndrome (AIDS) ,medicine ,Research Letter ,Humans ,In patient ,antimicrobial resistance ,Mutation ,Acquired Immunodeficiency Syndrome ,business.industry ,SARS-CoV-2 ,virus diseases ,COVID-19 ,medicine.disease ,Virology ,United States ,zoonoses ,immunocompromised ,Infectious Diseases ,coronavirus disease ,SARS-CoV-2 Neutralization Resistance Mutations in Patient with HIV/AIDS, California, USA ,Viral evolution ,Spike Glycoprotein, Coronavirus ,Medicine ,HIV/AIDS ,business ,Protein Binding ,severe acute respiratory syndrome coronavirus 2 - Abstract
We report persistent severe acute respiratory syndrome coronavirus 2 infection in a patient with HIV/AIDS; the virus developed spike N terminal domain and receptor binding domain neutralization resistance mutations. Our findings suggest that immunocompromised patients can harbor emerging variants of severe acute respiratory syndrome coronavirus 2.
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- 2021
27. A SARS-CoV-2 Variant with L452R and E484Q Neutralization Resistance Mutations
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Fumiko Yamamoto, Kenji O. Mfuh, Michelle Verghese, James L. Zehnder, Marilyn Mar, Malaya K. Sahoo, Becky Jiang, Hannah Wang, Naomi Iwai, Jacob A. Miller, and Benjamin A. Pinsky
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0301 basic medicine ,Microbiology (medical) ,2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,viruses ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,030106 microbiology ,medicine.disease_cause ,Neutralization ,03 medical and health sciences ,0302 clinical medicine ,Neutralization Tests ,medicine ,Humans ,030212 general & internal medicine ,skin and connective tissue diseases ,Letter to the Editor ,Mutation ,biology ,SARS-CoV-2 ,fungi ,COVID-19 ,Vaccine efficacy ,Virology ,respiratory tract diseases ,body regions ,biology.protein ,Antibody - Abstract
The emergence of SARS-CoV-2 variants t 23 hat reduce antibody neutralization and vaccine efficacy is of significant global concern. .
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- 2021
28. Multiplex SARS-CoV-2 Genotyping Reverse Transcriptase PCR for Population-Level Variant Screening and Epidemiologic Surveillance
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Michelle Verghese, Daniel Solis, Jacob A. Miller, ChunHong Huang, James L. Zehnder, Becky Jiang, Benjamin A. Pinsky, Kenji O. Mfuh, Marilyn Mar, Naomi Iwai, Hannah Wang, Fumiko Yamamoto, Malaya K. Sahoo, and Mamdouh Sibai
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Microbiology (medical) ,Nonsynonymous substitution ,education.field_of_study ,Genotype ,Reverse Transcriptase Polymerase Chain Reaction ,SARS-CoV-2 ,Concordance ,Population ,COVID-19 ,Biology ,Virology ,Phenotype ,Reverse transcription polymerase chain reaction ,Epidemiological Monitoring ,Humans ,Multiplex ,education ,Genotyping - Abstract
The emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants with concerning phenotypic mutations is of public health interest. Genomic surveillance is an important tool for a pandemic response, but many laboratories do not have the resources to support population-level sequencing. We hypothesized that a nucleic acid amplification test (NAAT) to genotype mutations in the viral spike protein could facilitate high-throughput variant surveillance. We designed and analytically validated a one-step multiplex allele-specific reverse transcriptase PCR (RT-qPCR) to detect three nonsynonymous spike protein mutations (L452R, E484K, N501Y). Assay specificity was validated with next-generation whole-genome sequencing. We then screened a large cohort of SARS-CoV-2-positive specimens from our San Francisco Bay Area population. Between 1 December 2020 and 1 March 2021, we screened 4,049 unique infections by genotyping RT-qPCR, with an assay failure rate of 2.8%. We detected 1,567 L452R mutations (38.7%), 34 N501Y mutations (0.84%), 22 E484K mutations (0.54%), and 3 (0.07%) E484K plus N501Y mutations. The assay had perfect (100%) concordance with whole-genome sequencing of a validation subset of 229 specimens and detected B.1.1.7, B.1.351, B.1.427, B.1.429, B.1.526, and P.2 variants, among others. The assay revealed the rapid emergence of the L452R variant in our population, with a prevalence of 24.8% in December 2020 that increased to 62.5% in March 2021. We developed and clinically implemented a genotyping RT-qPCR to conduct high-throughput SARS-CoV-2 variant screening. This approach can be adapted for emerging mutations and immediately implemented in laboratories already performing NAAT worldwide using existing equipment, personnel, and extracted nucleic acid.
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- 2021
29. Multiplex SARS-CoV-2 Genotyping PCR for Population-Level Variant Screening and Epidemiologic Surveillance
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James L. Zehnder, Hannah Wang, Marilyn Mar, Becky Jiang, Daniel Solis, Michelle Verghese, Jacob A. Miller, ChunHong Huang, Malaya K. Sahoo, Mamdouh Sibai, Kenji O. Mfuh, Benjamin A. Pinsky, Fumiko Yamamoto, and Naomi Iwai
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education.field_of_study ,Concordance ,Population ,Epidemiologic Surveillance ,Biology ,Virology ,Reverse transcriptase ,law.invention ,law ,Genotype ,Multiplex ,education ,Genotyping ,Polymerase chain reaction - Abstract
BackgroundEmergence of SARS-CoV-2 variants with concerning phenotypic mutations is of public health interest. Genomic surveillance is an important tool for pandemic response, but many laboratories do not have the resources to support population-level sequencing. We hypothesized that a spike genotyping nucleic acid amplification test (NAAT) could facilitate high-throughput variant surveillance.MethodsWe designed and analytically validated a one-step multiplex allele-specific reverse transcriptase polymerase chain reaction (RT-qPCR) to detect three non-synonymous spike protein mutations (L452R, E484K, N501Y). Assay specificity was validated with next-generation whole-genome sequencing. We then screened a large cohort of SARS-CoV-2 positive specimens from our San Francisco Bay Area population.ResultsBetween December 1, 2020 and March 1, 2021, we screened 4,049 unique infections by genotyping RT-qPCR, with an assay failure rate of 2.8%. We detected 1,567 L452R mutations (38.7%), 34 N501Y mutations (0.84%), 22 E484K mutations (0.54%), and 3 (0.07%) E484K+N501Y mutations. The assay had near-perfect (98-100%) concordance with whole-genome sequencing in a validation subset of 229 specimens, and detected B.1.1.7, B.1.351, B.1.427, B.1.429, B.1.526, and P.2 variants, among others. The assay revealed rapid emergence of L452R in our population, with a prevalence of 24.8% in December 2020 that increased to 62.5% in March 2021.ConclusionsWe developed and clinically implemented a genotyping RT-qPCR to conduct high-throughput SARS-CoV-2 variant screening. This approach can be adapted for emerging mutations and immediately implemented in laboratories already performing NAAT worldwide using existing equipment, personnel, and extracted nucleic acid.Summary / Key PointsEmergence of SARS-CoV-2 variants with concerning phenotypes is of public health interest. We developed a multiplex genotyping RT-qPCR to rapidly detect L452R, E484K, and N501Y with high sequencing concordance. This high-throughput alternative to resource-intensive sequencing enabled surveillance of L452R emergence.
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- 2021
30. Plasma as an alternative COVID-19 diagnostic specimen in a hospitalized patient negative for SARS-CoV-2 by Nasopharyngeal Swab
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Bryan A. Stevens, Lauren Lawrence, James L. Zehnder, Oliver F. Wirz, ChunHong Huang, Scott D. Boyd, Katharina Röltgen, Benjamin A. Pinsky, Fumiko Yamamoto, Run Zhang Shi, Catherine A. Hogan, Gary K. Schoolnik, and Malaya K. Sahoo
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0301 basic medicine ,Microbiology (medical) ,medicine.medical_specialty ,2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,Hospitalized patients ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,030106 microbiology ,Case Report ,03 medical and health sciences ,0302 clinical medicine ,Bronchoscopy ,Internal medicine ,medicine ,030212 general & internal medicine ,skin and connective tissue diseases ,plasma ,medicine.diagnostic_test ,business.industry ,Transmission (medicine) ,SARS-CoV-2 ,fungi ,COVID-19 ,General Medicine ,medicine.disease ,respiratory tract diseases ,body regions ,Pneumonia ,Infectious Diseases ,medicine.anatomical_structure ,RNA ,business ,Respiratory tract - Abstract
We present the case of an inpatient with pneumonia and repeatedly negative nasopharyngeal SARS-CoV-2 testing. In such challenging cases, alternative diagnostic options include lower respiratory tract and plasma SARS-CoV-2 RNA testing, of which the latter may be particularly useful where bronchoscopy is deferred due to clinical factors or transmission risk.
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- 2021
31. Safety and tolerability of linagliptin in Asians with type 2 diabetes: a pooled analysis of 4457 patients from 21 randomized, double-blind, placebo-controlled clinical trials
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Cornelia Schepers, Keizo Kanasaki, Rafael Sani Simões, Shen Qu, Linong Ji, Fumiko Yamamoto, and Daisuke Yabe
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Blood Glucose ,medicine.medical_specialty ,Linagliptin ,Type 2 diabetes ,Hypoglycemia ,Placebo ,Asian People ,Double-Blind Method ,Internal medicine ,medicine ,Humans ,Hypoglycemic Agents ,Pharmacology (medical) ,Adverse effect ,Randomized Controlled Trials as Topic ,Glycated Hemoglobin ,Dipeptidyl-Peptidase IV Inhibitors ,business.industry ,General Medicine ,medicine.disease ,Clinical trial ,Upper respiratory tract infection ,Treatment Outcome ,Tolerability ,Diabetes Mellitus, Type 2 ,business ,medicine.drug - Abstract
Background Safety and tolerability of glucose-lowering drugs is a key consideration for use in type 2 diabetes (T2D). We evaluated the safety and tolerability of the dipeptidyl peptidase-4 inhibitor linagliptin in Asian patients with T2D. Research design and methods This was a post-hoc, descriptive pooled analysis of 21 randomized, double-blind, placebo-controlled clinical trials of linagliptin in T2D patients lasting ≤52 weeks. We evaluated adverse events (AEs) and laboratory parameters in Asian participants living in Asia, both overall and in the East Asian subgroup. Results This analysis included 4457 Asian patients overall (2712 receiving linagliptin; 1745 receiving placebo) and 3057 (68.6%) East Asians. AEs were reported in 1510 (55.7%) Asian patients receiving linagliptin and 1032 (59.1%) receiving placebo but were considered drug-related in only 13.0% of each group. Serious AEs occurred in 109 (4.0%) linagliptin patients and 90 (5.2%) placebo patients. The most common AEs were nasopharyngitis (6.4% linagliptin, 7.3% placebo), upper respiratory tract infection (5.7% linagliptin, 6.5% placebo), and hypoglycemia (7.3% linagliptin, 6.3% placebo). One linagliptin patient had pancreatitis; none had bullous pemphigoid. No clinically relevant mean changes in laboratory parameters occurred. These findings were consistent in East Asians. Conclusions Linagliptin is well tolerated in Asian T2D patients, including East Asians, with low risk for AEs.
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- 2021
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32. Defining the features and duration of antibody responses to SARS-CoV-2 infection associated with disease severity and outcome
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Malaya K. Sahoo, ChunHong Huang, James L. Zehnder, Scott D. Boyd, Robert Tibshirani, Theodore S. Jardetzky, Peter S. Kim, Justin Manalac, Monali Manohar, Balasubramanian Narasimhan, Catherine A. Hogan, Kari C. Nadeau, Arjun Rustagi, Nigam H. Shah, Ana R. Otrelo-Cardoso, Hannah Wang, Jennifer R. Cochran, Benjamin A. Pinsky, Oliver F. Wirz, Saurabh Gombar, Javaria Najeeb, Katharina Röltgen, Bryan A. Stevens, Catherine A. Blish, Angela J. Rogers, Fumiko Yamamoto, Molly Hunter, Abigail E. Powell, Taia T. Wang, and Tho D. Pham
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Adult ,Male ,0301 basic medicine ,Immunology ,Enzyme-Linked Immunosorbent Assay ,macromolecular substances ,Antibodies, Viral ,Real-Time Polymerase Chain Reaction ,Severity of Illness Index ,Asymptomatic ,Virus ,Serology ,03 medical and health sciences ,0302 clinical medicine ,Antigen ,Severity of illness ,medicine ,Humans ,030212 general & internal medicine ,Research Articles ,Aged ,Aged, 80 and over ,biology ,SARS-CoV-2 ,business.industry ,R-Articles ,COVID-19 ,General Medicine ,Middle Aged ,Antibodies, Neutralizing ,Coronavirus ,030104 developmental biology ,Interaction with host ,Spike Glycoprotein, Coronavirus ,Cohort ,biology.protein ,Female ,Angiotensin-Converting Enzyme 2 ,medicine.symptom ,Antibody ,business - Abstract
Illness severity in COVID-19 correlates with specificity of serological responses, but antibody levels decrease in most patients., SARS-CoV-2-specific antibodies, particularly those preventing viral spike receptor binding domain (RBD) interaction with host angiotensin-converting enzyme 2 (ACE2) receptor, can neutralize the virus. It is, however, unknown which features of the serological response may affect clinical outcomes of COVID-19 patients. We analyzed 983 longitudinal plasma samples from 79 hospitalized COVID-19 patients and 175 SARS-CoV-2-infected outpatients and asymptomatic individuals. Within this cohort, 25 patients died of their illness. Higher ratios of IgG antibodies targeting S1 or RBD domains of spike compared to nucleocapsid antigen were seen in outpatients who had mild illness versus severely ill patients. Plasma antibody increases correlated with decreases in viral RNAemia, but antibody responses in acute illness were insufficient to predict inpatient outcomes. Pseudovirus neutralization assays and a scalable ELISA measuring antibodies blocking RBD-ACE2 interaction were well correlated with patient IgG titers to RBD. Outpatient and asymptomatic individuals’ SARS-CoV-2 antibodies, including IgG, progressively decreased during observation up to five months post-infection.
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- 2020
33. SARS-CoV-2 Antibody Responses Correlate with Resolution of RNAemia But Are Short-Lived in Patients with Mild Illness
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Peter S. Kim, Katharina Röltgen, Justin Manalac, Theodore S. Jardetzky, Taia T. Wang, Tho D. Pham, Malaya K. Sahoo, Angela J. Rogers, Catherine A. Hogan, ChunHong Huang, Arjun Rustagi, James L. Zehnder, Oliver F. Wirz, Catherine A. Blish, Saurabh Gombar, Kari C. Nadeau, Scott D. Boyd, Abigail E. Powell, Jennifer R. Cochran, Bryan A. Stevens, Benjamin A. Pinsky, Ana R. Otrelo-Cardoso, Fumiko Yamamoto, Molly Hunter, Javaria Najeeb, Nigam H. Shah, and Robert Tibshirani
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biology ,business.industry ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,viruses ,Asymptomatic ,Virus ,Article ,Serology ,Antibody response ,Interaction with host ,Immunology ,biology.protein ,medicine ,Antibody ,medicine.symptom ,Receptor ,business - Abstract
SARS-CoV-2-specific antibodies, particularly those preventing viral spike receptor binding domain (RBD) interaction with host angiotensin-converting enzyme 2 (ACE2) receptor, could offer protective immunity, and may affect clinical outcomes of COVID-19 patients. We analyzed 625 serial plasma samples from 40 hospitalized COVID-19 patients and 170 SARS-CoV-2-infected outpatients and asymptomatic individuals. Severely ill patients developed significantly higher SARS-CoV-2-specific antibody responses than outpatients and asymptomatic individuals. The development of plasma antibodies was correlated with decreases in viral RNAemia, consistent with potential humoral immune clearance of virus. Using a novel competition ELISA, we detected antibodies blocking RBD-ACE2 interactions in 68% of inpatients and 40% of outpatients tested. Cross-reactive antibodies recognizing SARS-CoV RBD were found almost exclusively in hospitalized patients. Outpatient and asymptomatic individuals’ serological responses to SARS-CoV-2 decreased within 2 months, suggesting that humoral protection may be short-lived.
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- 2020
34. Safety and tolerability of empagliflozin and linagliptin combination therapy in patients with type 2 diabetes mellitus: a pooled analysis of data from five randomized, controlled clinical trials
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Clemens Heilmann, Larisa Yarush, Hirotaka Watada, Atsushi Taniguchi, Atsutaka Yasui, Toshimasa Yamauchi, and Fumiko Yamamoto
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medicine.medical_specialty ,Combination therapy ,Phases of clinical research ,Linagliptin ,030204 cardiovascular system & hematology ,03 medical and health sciences ,0302 clinical medicine ,Glucosides ,Internal medicine ,Empagliflozin ,Medicine ,Humans ,Hypoglycemic Agents ,Pharmacology (medical) ,In patient ,Benzhydryl Compounds ,Sodium-Glucose Transporter 2 Inhibitors ,Randomized Controlled Trials as Topic ,business.industry ,Type 2 Diabetes Mellitus ,General Medicine ,Hypoglycemia ,Clinical trial ,Drug Combinations ,Tolerability ,Diabetes Mellitus, Type 2 ,030220 oncology & carcinogenesis ,business ,medicine.drug - Abstract
The fixed-dose combination of empagliflozin and linagliptin, two glucose-lowering drugs prescribed for type 2 diabetes mellitus, has demonstrated good tolerability in phase III clinical trials. To further evaluate the safety profile of this combination, the data from these trials were pooled and analyzed.This was a post-hoc pooled analysis of five randomized, double-blind, clinical trials of the empagliflozin/linagliptin fixed-dose combination. Data for adverse events and laboratory parameters were evaluated.The analysis included 2895 patients: 1410, 1015, and 470 receiving the empagliflozin/linagliptin combination, empagliflozin monotherapy, and linagliptin monotherapy, respectively. Overall, the incidence of adverse events with the empagliflozin/linagliptin combination was similar to that with empagliflozin or linagliptin alone. Fewer than 2% of patients experienced hypoglycemia, and its incidence was similar across treatment groups. Genital infections occurred in more patients receiving empagliflozin/linagliptin (3.0%) or empagliflozin monotherapy (5.1%) than in those receiving linagliptin monotherapy (1.9%). No cases of Fournier's gangrene, diabetic ketoacidosis, or pemphigoid occurred, and no clinically relevant mean changes in laboratory parameters were noted.The safety profile of the fixed-dose combination of empagliflozin and linagliptin was similar to the individual monotherapies. No new safety signals were identified.
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- 2020
35. Capturing Differential Allele-Level Expression and Genotypes of All Classical HLA Loci and Haplotypes by a New Capture RNA-Seq Method
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Satoko Morishima, Marcelo Fernandez-Vina, Akiko Mizutani, Shunichi Kato, Sayaka Ito, Yoshie Kametani, Masafumi Tanaka, Yasuo Morishima, Makoto Murata, Seiamak Bahram, Takashi Shiina, Atsuko Shigenari, Fumiko Yamamoto, Shingo Suzuki, and Jerzy K. Kulski
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0301 basic medicine ,lcsh:Immunologic diseases. Allergy ,Immunology ,Human leukocyte antigen ,Biology ,Major histocompatibility complex ,Polymorphism, Single Nucleotide ,03 medical and health sciences ,0302 clinical medicine ,Gene Frequency ,HLA Antigens ,Predictive Value of Tests ,human leukocyte antigen ,Genotype ,Humans ,Immunology and Allergy ,RNA expression level ,RNA-Seq ,Allele ,Gene ,Genotyping ,Original Research ,Genetics ,Haplotype ,High-Throughput Nucleotide Sequencing ,Reproducibility of Results ,030104 developmental biology ,Haplotypes ,genotyping ,capture RNA-Seq ,Genetic Loci ,Allelic Imbalance ,biology.protein ,next-generation sequencing ,HLA allele ,lcsh:RC581-607 ,030215 immunology - Abstract
The highly polymorphic human major histocompatibility complex (MHC) also known as the human leukocyte antigen (HLA) encodes class I and II genes that are the cornerstone of the adaptive immune system. Their unique diversity (>25,000 alleles) might affect the outcome of any transplant, infection, and susceptibility to autoimmune diseases. The recent rapid development of new next-generation sequencing (NGS) methods provides the opportunity to study the influence/correlation of this high level of HLA diversity on allele expression levels in health and disease. Here, we describe the NGS capture RNA-Seq method that we developed for genotyping all 12 classical HLA loci (HLA-A, HLA-B, HLA-C, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, HLA-DRB3, HLA-DRB4, and HLA-DRB5) and assessing their allelic imbalance by quantifying their allele RNA levels. This is a target enrichment method where total RNA is converted to a sequencing-ready complementary DNA (cDNA) library and hybridized to a complex pool of RNA-specific HLA biotinylated oligonucleotide capture probes, prior to NGS. This method was applied to 161 peripheral blood mononuclear cells and 48 umbilical cord blood cells of healthy donors. The differential allelic expression of 10 HLA loci (except for HLA-DRA and HLA-DPA1) showed strong significant differences (P < 2.1 × 10−15). The results were corroborated by independent methods. This newly developed NGS method could be applied to a wide range of biological and medical questions including graft rejections and HLA-related diseases.
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- 2020
36. High frequency of SARS-CoV-2 RNAemia and association with severe disease
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Bryan A. Stevens, Fumiko Yamamoto, James L. Zehnder, Jason H. Kurzer, Saurabh Gombar, Catherine A. Hogan, Natasha Garamani, Kanagavel Murugesan, Benjamin A. Pinsky, Malaya K. Sahoo, and ChunHong Huang
- Subjects
0301 basic medicine ,Microbiology (medical) ,Catastrophic illness ,medicine.medical_specialty ,Cross-sectional study ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,medicine.medical_treatment ,Severe disease ,severity ,medicine.disease_cause ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,law ,blood ,Internal medicine ,Diabetes mellitus ,medicine ,Major Article ,Humans ,Viral rna ,030212 general & internal medicine ,Coronavirus ,Mechanical ventilation ,biology ,business.industry ,SARS-CoV-2 ,RNA ,COVID-19 ,Middle Aged ,medicine.disease ,biology.organism_classification ,Intensive care unit ,Obesity ,Hospitalization ,030104 developmental biology ,Infectious Diseases ,Cross-Sectional Studies ,AcademicSubjects/MED00290 ,RNAemia ,RNA, Viral ,business ,Betacoronavirus - Abstract
Background Detection of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA in blood, also known as RNAemia, has been reported, but its prognostic implications are poorly understood. This study aimed to determine the frequency of SARS-CoV-2 RNA in plasma and its association with coronavirus disease 2019 (COVID-19) clinical severity. Methods An analytical cross-sectional study was performed in a single-center tertiary care institution and included consecutive inpatients and outpatients with confirmed COVID-19. The prevalence of SARS CoV-2 RNAemia and the strength of its association with clinical severity variables were examined and included intensive care unit (ICU) admission, invasive mechanical ventilation, and 30-day all-cause mortality. Results Paired nasopharyngeal and plasma samples were included from 85 patients. The median age was 55 years, and individuals with RNAemia were older than those with undetectable SARS-CoV-2 RNA in plasma (63 vs 50 years; P = .04). Comorbidities were frequent including obesity (37.6%), hypertension (30.6%), and diabetes mellitus (22.4%). RNAemia was detected in 28/85 (32.9%) of patients, including 22/28 (78.6%) who required hospitalization. In models adjusted for age, RNAemia was detected more frequently in individuals who developed severe disease including ICU admission (32.1 vs 14.0%; P = .04) and invasive mechanical ventilation (21.4% vs 3.5%; P = .02). All 4 deaths occurred in individuals with detectable RNAemia. An additional 121 plasma samples from 28 individuals with RNAemia were assessed longitudinally, and RNA was detected for a maximum duration of 10 days. Conclusions This study demonstrated a high proportion of SARS-CoV-2 RNAemia, and an association between RNAemia and clinical severity suggesting the potential utility of plasma viral testing as a prognostic indicator for COVID-19., This cross-sectional study assessed the presence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNAemia in 85 individuals, and association with clinical severity. Results demonstrate a high frequency of SARS-CoV-2 RNAemia, and an association between RNAemia and clinical severity variables including intensive care unit admission and mortality.
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- 2020
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37. Retrospective Screening of Clinical Samples for Monkeypox Virus DNA, California, USA, 2022.
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Contag, Caitlin A., Lu, Jacky, Renfro, Zachary T., Karan, Abraar, Salinas, Jorge L., Khan, Michelle, Solis, Daniel, Sahoo, Malaya K., Fumiko Yamamoto, and Pinsky, Benjamin A.
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MONKEYPOX ,DNA viruses ,MEDICAL screening ,MUCOUS membranes ,NEISSERIA gonorrhoeae - Abstract
We retrospectively screened oropharyngeal and rectal swab samples originally collected in California, USA, for Chlamydia trachomatis and Neisseria gonorrhoeae testing for the presence of monkeypox virus DNA. Among 206 patients screened, 17 (8%) had samples with detectable viral DNA. Monkeypox virus testing from mucosal sites should be considered for at-risk patients. [ABSTRACT FROM AUTHOR]
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- 2023
- Full Text
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38. SARS-CoV-2 Nucleocapsid Plasma Antigen for Diagnosis and Monitoring of COVID-19.
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Wang, Hannah, Hogan, Catherine A., Verghese, Michelle, Solis, Daniel, Sibai, Mamdouh, ChunHong Huang, Röltgen, Katharina, Stevens, Bryan A., Fumiko Yamamoto, Sahoo, Malaya K., Zehnder, James, Boyd, Scott D., and Pinsky, Benjamin A.
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- 2022
- Full Text
- View/download PDF
39. Long-Term Safety and Effectiveness of Linagliptin in Japanese Patients with Type 2 Diabetes and Renal Dysfunction: a Post-Marketing Surveillance Study
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Naoyuki Hayashi, Tetsuaki Hirase, Rie Ikeda, Kaori Ochiai, Tomoo Okamura, and Fumiko Yamamoto
- Subjects
medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,Renal function ,030209 endocrinology & metabolism ,Subgroup analysis ,Effectiveness ,Linagliptin ,030204 cardiovascular system & hematology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Long-term ,Internal medicine ,Internal Medicine ,Clinical endpoint ,medicine ,Adverse effect ,Glycemic ,Original Research ,business.industry ,Type 2 diabetes ,Clinical trial ,chemistry ,Glycated hemoglobin ,Safety ,business ,medicine.drug - Abstract
Introduction International clinical trials have shown that linagliptin significantly improves glycemic control and can be used at a single dose regardless of renal function in patients with type 2 diabetes (T2D). However, to date, no studies have evaluated the use of linagliptin in Japanese patients with T2D by renal function in routine clinical care. Methods This was a subgroup analysis of data from a prospective observational post-marketing surveillance (PMS) study of linagliptin conducted in Japan that evaluated the safety and effectiveness of linagliptin in routine clinical care for 3 years in Japanese patients with T2D. The subgroup analysis examined the patient population of this PMS study according to renal function using estimated glomerular filtration rate (eGFR) data. The incidence of linagliptin-related adverse events (adverse drug reactions [ADRs]) was the primary endpoint, and the change in glycated hemoglobin (HbA1c) from baseline to last observation was the secondary endpoint. Results Of the 2235 patients included in the safety analysis, eGFR was ≥ 90 mL/min/1.73 m2 (defined as group G1) in 16.9% (n = 377), ≥ 60 to
- Published
- 2019
40. Long-Term Safety and Effectiveness of Linagliptin in Japanese Patients with Type 2 Diabetes Mellitus: A 3-Year Post-Marketing Surveillance Study
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Kaori Ochiai, Naoyuki Hayashi, Tomoo Okamura, Rie Ikeda, Fumiko Yamamoto, and Yuriko Unno
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medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,MedDRA ,Postmarketing surveillance ,030209 endocrinology & metabolism ,Linagliptin ,030204 cardiovascular system & hematology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Long-term ,Internal medicine ,Diabetes mellitus ,Type 2 diabetes mellitus ,Internal Medicine ,Clinical endpoint ,medicine ,DPP-4 inhibitor ,Original Research ,business.industry ,Incidence (epidemiology) ,Type 2 Diabetes Mellitus ,Post-marketing surveillance ,medicine.disease ,chemistry ,Japanese ,Glycated hemoglobin ,business ,medicine.drug - Abstract
Introduction Clinical trials of linagliptin in Japanese patients conducted to date have had limited observational periods; therefore, there is a need for additional longer-term real-world data. The aim of this study was to investigate the long-term safety and effectiveness of linagliptin in routine clinical practice. Methods This was a prospective, observational, post-marketing surveillance study conducted over 156 weeks in patients with type 2 diabetes mellitus who started linagliptin monotherapy. The primary endpoint was the incidence of adverse drug reactions (ADRs). The secondary endpoint was the change in glycated hemoglobin (HbA1c) from baseline to last available observation. Other effectiveness endpoints included the change in HbA1c and change in fasting plasma glucose (FPG) from baseline to week 26 and over the course of the treatment period. Results Overall, 2235 and 2054 patients were included in the safety and effectiveness analysis sets, respectively. Patients were mostly male (58.4%), and the mean age was 66.7 years. The incidence of ADRs was 10.7% (n = 240). The most frequent ADRs according to MedDRA preferred terms were diabetes mellitus (n = 35 patients, 1.6%), constipation (n = 21, 0.9%), diabetes mellitus inadequate control (n = 13, 0.6%) and hypertension (n = 13, 0.6%). The mean change in HbA1c from baseline to last observation was − 0.67% [standard deviation (SD) 1.27%, 95% confidence interval − 0.72, − 0.61]. At week 26, HbA1c and FPG showed mean ± SD changes from baseline of – 0.73 ± 1.20% and − 21.02 ± 44.33 mg/dL, respectively, that were sustained until week 156. Conclusions In Japanese patients with type 2 diabetes mellitus, linagliptin produced sustained reductions in HbA1c and had a safety profile consistent with the established safety profile of linagliptin. Trial Registration ClinicalTrials.gov (NCT01650259). Electronic supplementary material The online version of this article (10.1007/s13300-019-00723-x) contains supplementary material, which is available to authorized users.
- Published
- 2019
41. Tyrosol Reduces Amyloid-β Oligomer Neurotoxicity and Alleviates Synaptic, Oxidative, and Cognitive Disturbances in Alzheimer's Disease Model Mice
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Akira Tamaoka, Akiyoshi Saitoh, Kaori Taniguchi, Daisuke Yamada, Masayuki Sekiguchi, Wataru Araki, Hidehiro Mizusawa, Fumiko Yamamoto, Jinwei Yang, Fuyuki Kametani, Yusuke Sakai, Keiji Wada, Yumiko M. Araki, Naomi Mamada, Takuya Arai, and Masayuki Itoh
- Subjects
0301 basic medicine ,Transgene ,Neurotoxins ,Nerve Tissue Proteins ,Hippocampal formation ,Pharmacology ,medicine.disease_cause ,Antioxidants ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,0302 clinical medicine ,In vivo ,Alzheimer Disease ,medicine ,Animals ,Humans ,Cognitive Dysfunction ,Cells, Cultured ,Neurons ,Amyloid beta-Peptides ,Caspase 3 ,Plant Extracts ,General Neuroscience ,Microfilament Proteins ,Neurotoxicity ,General Medicine ,Phenylethyl Alcohol ,medicine.disease ,Barnes maze ,Tyrosol ,Psychiatry and Mental health ,Clinical Psychology ,Disease Models, Animal ,Oxidative Stress ,030104 developmental biology ,medicine.anatomical_structure ,chemistry ,Rhodiola ,Neuron ,Geriatrics and Gerontology ,030217 neurology & neurosurgery ,Oxidative stress - Abstract
Soluble amyloid-β (Aβ) oligomers (AβOs), which elicit neurotoxicity and synaptotoxicity, are thought to play an initiating role in the pathology of Alzheimer's disease (AD). Since AβOs are a key therapeutic target, we attempted to identify natural agents that reduce AβO neurotoxicity. Using an assay system in which primary cultured neurons are treated with AβOs, we found that Rhodiola rosea extracts and one of its main constituents, tyrosol, significantly inhibited AβO-induced caspase-3 activation. We then assessed the in vivo efficacy of tyrosol by oral administration of the compound into AD model (5XFAD) transgenic and non-transgenic mice from either 2 or 4 to 7 months of age. In both paradigms, tyrosol treatment did not affect body weights of mice. Immunohistochemical analysis revealed that the immunoreactivity of spinophilin, a dendritic synaptic protein, was significantly reduced in three hippocampal subregions of vehicle-treated AD mice compared with non-transgenic mice, which was reversed in tyrosol-treated AD mice. Tyrosol treatment also prevented the enhancement of 4-hydroxy-2-nonenal immunoreactivity in the hippocampal CA3 region of AD mice. By contrast, tyrosol administration did not affect Aβ accumulation, as evaluated by immunohistochemical and biochemical analyses. Moreover, the Barnes maze test showed that tyrosol administration modestly mitigated spatial memory impairment in AD mice. These findings collectively indicate that the natural agent tyrosol protects neurons against AβO neurotoxicity in vitro and ameliorates synaptic disturbance, oxidative stress responses, and cognitive impairment in vivo. We thus suggest that tyrosol is potentially an effective, safe, and unique drug candidate for AD.
- Published
- 2019
42. GDF-15, a mitochondrial disease biomarker, is associated with the severity of multiple sclerosis
- Author
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Zenshi Miyake, Naomi Mamada, Tetsuya Moriyama, Shuichi Yatsuga, Kumi Yanagiha, Satoshi Aizawa, Akiko Ishii, Kazuhiro Ishii, Masahiko Watanabe, Akira Tamaoka, Seitaro Nohara, Takashi Hosaka, Makoto Terada, Kiyotaka Nakamagoe, Yasutoshi Koga, Hiroshi Tsuji, Naoki Tozaka, Fumiko Yamamoto, Yasushi Tomidokoro, and Tetsuto Yamaguchi
- Subjects
Oncology ,Adult ,Male ,medicine.medical_specialty ,Growth Differentiation Factor 15 ,Mitochondrial Diseases ,Multiple Sclerosis ,Mitochondrial disease ,03 medical and health sciences ,Disability Evaluation ,Young Adult ,0302 clinical medicine ,Internal medicine ,Limbic Encephalitis ,medicine ,Humans ,030212 general & internal medicine ,Amyotrophic lateral sclerosis ,Aged ,Aged, 80 and over ,Expanded Disability Status Scale ,business.industry ,Multiple sclerosis ,Limbic encephalitis ,Confounding ,Amyotrophic Lateral Sclerosis ,Neuromyelitis Optica ,Age Factors ,Transforming growth factor beta superfamily ,Middle Aged ,medicine.disease ,Fibroblast Growth Factors ,Neurology ,embryonic structures ,Biomarker (medicine) ,Female ,Neurology (clinical) ,business ,030217 neurology & neurosurgery ,Biomarkers - Abstract
GDF-15, a member of the transforming growth factor beta superfamily, regulates inflammatory and apoptotic pathways in various diseases, such as heart failure, kidney dysfunction, and cancer. We aimed to clarify potentially confounding variables affecting GDF-15 and demonstrate its utility as a mitochondrial biomarker using serum samples from 15 patients with mitochondrial diseases (MD), 15 patients with limbic encephalitis (LE), 10 patients with multiple sclerosis/neuromyelitis optica spectrum disorders (MS/NMOSD), and 19 patients with amyotrophic lateral sclerosis (ALS). GDF-15 and FGF-21 were significantly elevated in MD. GDF-15 and FGF-21 showed a good correlation in MD but not in LE, MS, and ALS. GDF-15 was potentially influenced by age in LE, MS/NMOSD, and ALS but not in MD. FGF-21 was not correlated with age in MS/NMOSD, ALS, LE, and MD. GDF-15 was not correlated with clinical features in LE or BMI or body weight in ALS. GDF-15 positively correlated with the Expanded Disability Status Scale (EDSS) in MS/NMOSD, while EDSS showed no correlation with age. In conclusion, the results revealed that GDF-15 may be influenced by EDSS in MS/NMOPSD and by age in LE, MS/NMOSD, and ALS but not in MD. Mitochondrial damage in MS/NMOSD is a potentially confounding variable affecting GDF-15.
- Published
- 2019
43. Mapping and definition of HLA class I and II serologic epitopes using an unbiased reverse engineering strategy
- Author
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Dolly B. Tyan, Fumiko Yamamoto, Lin Wang, and Chia-Jung Chang
- Subjects
0301 basic medicine ,Immunology ,Locus (genetics) ,Peptide binding ,Pilot Projects ,Computational biology ,Human leukocyte antigen ,Immunogenetics ,Biology ,Epitope ,Cohort Studies ,03 medical and health sciences ,Epitopes ,0302 clinical medicine ,Antigen ,Protein Domains ,Immunology and Allergy ,Humans ,Amino Acid Sequence ,Alleles ,Histocompatibility Testing ,Histocompatibility Antigens Class I ,Histocompatibility Antigens Class II ,High-Throughput Nucleotide Sequencing ,General Medicine ,Kidney Transplantation ,Tissue Donors ,Transplant Recipients ,Histocompatibility ,Transplantation ,030104 developmental biology ,Genetic Loci ,Immunoglobulin G ,Heart Transplantation ,Algorithms ,Epitope Mapping ,030215 immunology - Abstract
Current models describing HLA epitopes are both theoretical and empirical. Each has limitations yielding discordant results and increasingly complex modeling. The models make a priori assumptions that epitopes must be present only on the mature protein, solvent accessible, on the 'top' (peptide binding surface) of the molecule, restricted to the same class as the antibody, and in the same position on the target allele if reactive to more than one locus. Results obtained counter to these assumptions are routinely discounted. For the 17th International Histocompatibility and Immunogenetics Workshop, we developed a reverse engineering algorithm to define epitopes without these assumptions on a cohort of 332 primary transplant pairs. Complete NGS typing of the transcribed (including leader) genomic DNA for 11 HLA loci of donor and recipient and DSA assignment by single antigen beads was performed. Our results show that, when grouped by 16 class I and II allele specific DSA, uniform clusters and 172 specific amino acid target epitopes are recognized by recipients despite originating from disparate HLA pairs. Data also show that these targets can be in the leader, alpha 3, transmembrane and cytoplasmic domains, thus calling into question current assumptions regarding immunogenic epitopes. Comparisons of amino acid epitopes defined by the Terasaki and Duquesnoy groups (TerEp and EpRegistry) are given.
- Published
- 2019
44. SARS-CoV-2 Neutralization Resistance Mutations in Patient with HIV/AIDS, California, USA.
- Author
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Hoffman, Seth A., Costales, Cristina, Sahoo, Malaya K., Palanisamy, Srikanth, Fumiko Yamamoto, ChunHong Huang, Verghese, Michelle, Solis, Daniel A., Sibai, Mamdouh, Subramanian, Aruna, Tompkins, Lucy S., Grant, Philip, Shafer, Robert W., Pinsky, Benjamin A., Yamamoto, Fumiko, Huang, ChunHong, and Solis, Daniel C
- Subjects
SARS-CoV-2 ,COVID-19 ,HIV ,AIDS ,HIV infections ,HIV status - Abstract
We report persistent severe acute respiratory syndrome coronavirus 2 infection in a patient with HIV/AIDS; the virus developed spike N terminal domain and receptor binding domain neutralization resistance mutations. Our findings suggest that immunocompromised patients can harbor emerging variants of severe acute respiratory syndrome coronavirus 2. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
45. Vestibular Impairment in Frontotemporal Dementia Syndrome
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Satoshi Aizawa, Kiyotaka Nakamagoe, Naoki Tozaka, Mao Takiguchi, Fumiko Yamamoto, Tetsuya Moriyama, Seitaro Nohara, Zenshi Miyake, Kumi Yanagiha, Akira Tamaoka, Kotarou Kadono, Makoto Terada, Tadachika Koganezawa, and Kentaro Furusho
- Subjects
0301 basic medicine ,medicine.medical_specialty ,genetic structures ,Cognitive Neuroscience ,Audiology ,Caloric test ,lcsh:Geriatrics ,Frontotemporal lobar degeneration ,VESTIBULAR IMPAIRMENT ,lcsh:RC346-429 ,03 medical and health sciences ,0302 clinical medicine ,mental disorders ,medicine ,otorhinolaryngologic diseases ,Original Research Article ,Vestibular function ,Visual suppression ,lcsh:Neurology. Diseases of the nervous system ,Vestibular system ,business.industry ,nutritional and metabolic diseases ,Inferior parietal lobule ,Vestibular stimulation ,medicine.disease ,nervous system diseases ,Psychiatry and Mental health ,lcsh:RC952-954.6 ,030104 developmental biology ,Visual Suppression ,business ,Frontal eye field ,030217 neurology & neurosurgery ,Frontotemporal dementia - Abstract
Background: No studies to date have attempted to evaluate frontotemporal lobar degeneration from the perspective of the vestibular system. Objective: The present study examined vestibular function in patients with frontotemporal dementia (FTD) clinical syndrome and evaluated whether vestibular disorders are involved in the clinical symptoms due to FTD. Methods: Fourteen patients with FTD syndrome, as well as healthy elderly controls without dementia, were included in the present study. All subjects underwent vestibular function tests using electronystagmography, such as caloric tests and visual suppression (VS) tests, in which the induced caloric nystagmus was suppressed by visual stimuli. The association between clinical symptoms and vestibular function in the FTD syndrome group was further examined. Results: In the FTD syndrome group, caloric nystagmus was not necessarily suppressed during VS tests. Furthermore, VS was observed to be significantly impaired in FTD syndrome patients with gait disturbance as compared to those without such disturbance. Conclusion: The present study revealed that impairment of VS in patients with FTD results in an inability to regulate vestibular function by means of visual perception, regardless of multiple presumed neuropathological backgrounds. This could also be associated with gait disturbance in patients with FTD syndrome.
- Published
- 2016
46. TFEB-mediated Enhancement of the Autophagy-lysosomal Pathway Dually Modulates the Process of Amyloid β-Protein Generation in Neurons
- Author
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Akira Tamaoka, Kaori Taniguchi, Fumiko Yamamoto, Wataru Araki, Naomi Mamada, Fuyuki Kametani, and Madepalli K. Lakshmana
- Subjects
0301 basic medicine ,Proteasome Endopeptidase Complex ,Amyloid ,ADAM10 ,Primary Cell Culture ,Cathepsin D ,03 medical and health sciences ,ADAM10 Protein ,Amyloid beta-Protein Precursor ,0302 clinical medicine ,Downregulation and upregulation ,medicine ,Amyloid precursor protein ,Autophagy ,Animals ,Rats, Wistar ,Cerebral Cortex ,Neurons ,Amyloid beta-Peptides ,biology ,Chemistry ,Basic Helix-Loop-Helix Leucine Zipper Transcription Factors ,General Neuroscience ,Peptide Fragments ,Cell biology ,Up-Regulation ,030104 developmental biology ,medicine.anatomical_structure ,Proteasome ,biology.protein ,TFEB ,Neuron ,Lysosomes ,030217 neurology & neurosurgery - Abstract
Abnormalities of the autophagy-lysosomal pathway (ALP) have been implicated in the pathology of Alzheimer's disease (AD). Activation of TFEB (transcription factor EB), a master regulator of the ALP, leads to ALP facilitation. The present study sought to clarify whether TFEB-mediated ALP facilitation influences the process of amyloid β-protein (Aβ) generation in neurons. TFEB was overexpressed in mature rat primary cortical neurons via recombinant adenoviruses, without (basal conditions) or with co-overexpression of wild-type amyloid precursor protein (APP) or its β-C-terminal fragment (β-CTF). We confirmed that TFEB overexpression upregulated the lysosomal proteins, cathepsin D and LAMP-1. In TFEB-expressing neurons, protein levels of ADAM10 were profoundly increased, whereas those of APP, BACE1, or γ-secretase complex proteins were unaffected. However, TFEB did not affect ADAM10 mRNA levels. TFEB overexpression had different effects on Aβ production depending on the expression level of APP or β-CTF: TFEB slightly decreased Aβ secretion under basal conditions; clearly increased α-CTF levels and marginally increased β-CTF levels with modest increases in secreted Aβ in APP-expressing neurons; and caused a remarkable increase in β-CTF levels with a significant increase in secreted Aβ in β-CTF-expressing neurons. Inhibition of proteasomes, but not lysosomes, markedly increased β-CTF levels in β-CTF-expressing neurons. These results collectively indicate that TFEB modulates Aβ production not only by increasing α-secretase processing of APP through ADAM10 upregulation but also by augmenting β-CTF levels possibly via altered proteasome-mediated catabolism. Thus, TFEB-mediated ALP enhancement appears to have dual, but opposite, effects on Aβ production in neurons.
- Published
- 2018
47. A reverse-engineering strategy utilizing the integration of single antigen beads and NGS HLA genotypes to detect potential antibody inducing epitopes
- Author
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Chia-Jung Chang, Fumiko Yamamoto, and Dolly B. Tyan
- Subjects
0301 basic medicine ,Genotype ,Immunology ,Computational biology ,Human leukocyte antigen ,Epitope ,Antibodies ,Cohort Studies ,03 medical and health sciences ,Exon ,Epitopes ,0302 clinical medicine ,Protein structure ,Antigen ,HLA Antigens ,Immunology and Allergy ,Humans ,Amino Acid Sequence ,Alleles ,chemistry.chemical_classification ,biology ,Histocompatibility Testing ,High-Throughput Nucleotide Sequencing ,General Medicine ,Exons ,Kidney Transplantation ,Tissue Donors ,Transplant Recipients ,Amino acid ,Protein Structure, Tertiary ,030104 developmental biology ,chemistry ,biology.protein ,Heart Transplantation ,Antibody ,Algorithms ,Epitope Mapping ,Software ,030215 immunology - Abstract
Central to the idea of antibody recognition is some degree of foreignness of the target antigen compared to the antibody producer. Epitopes are distinct regions on an antigen to which antibody can be elicited and bound. However, for HLA antigens, there is no consensus definition of what represents the minimal functional immunogenic unit of dissimilarity. To assess this in an unbiased way, we developed a reverse engineering software strategy based on donor specific antibodies defined by single antigen beads and full length genomic high resolution HLA typing by NGS of recipients and donors (332 transplant pairs). Starting with the ATG of Exon 1 and moving stepwise one amino acid at a time for each of the following triplets, the algorithm compared every possible amino acid triplet of the recipient and donor for 11 loci (A, B, C, DRB1, DRB3, DRB4, DRB5, DQA1, DQB1, DPA1, DPB1). Results were agnostic with respect to HLA class, not restricted to just the mature protein, and not influenced by existing maps (e.g., IMGT, or epitope models). We also developed web-based functions in the 17th IHIWS database to collect the unbiased triplets so that we could group the transplant pairs with the same donor specific antibodies and find shared triplets within the groups as potential core or essential epitopes that trigger the antibody formation. Profiling the pairs where the same DSA was identified led to identification of discrete amino acid triplets shared among the pairs irrespective of HLA match. The potential epitopes were mapped onto the 3D protein structure for reference.
- Published
- 2018
48. Assessment of in vitro antiovulatory activities of nonsteroidal anti-inflammatory drugs and comparison with in vivo reproductive toxicities of medaka (Oryzias latipes )
- Author
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Kana Okada, Rika Yamamoto, Eiko Nakano, Fumiko Yamamoto, Saki Hasegawa, Hirofumi Yokota, Sayaka Eguchi, Marie Tanaka, and Ayaka Sunagawa
- Subjects
0301 basic medicine ,medicine.medical_specialty ,Health, Toxicology and Mutagenesis ,media_common.quotation_subject ,010501 environmental sciences ,Management, Monitoring, Policy and Law ,Pharmacology ,Biology ,Toxicology ,01 natural sciences ,Anovulation ,03 medical and health sciences ,Diclofenac ,In vivo ,Internal medicine ,medicine ,Potency ,IC50 ,Ovulation ,0105 earth and related environmental sciences ,media_common ,General Medicine ,Diclofenac Sodium ,medicine.disease ,030104 developmental biology ,Endocrinology ,Reproductive toxicity ,medicine.drug - Abstract
Nonsteroidal anti-inflammatory drugs (NSAIDs) are widely used therapeutic agents; however, their pharmacological actions raise concerns about potential risks to the reproductive health of aquatic vertebrates. In the present study, a medaka ovulation assay was applied as an in vitro model to evaluate NSAID-induced antiovulatory activity. We first tested five NSAIDs, including diclofenac sodium (DCF), ketoprofen (KP), salicylic acid (SA), mefenamic acid (MA), and acetylsalicylic acid (ASA) for their antiovulatory activities toward the follicles isolated from the ovaries of spawning females. Of all the chemicals tested, DCF had the highest antiovulatory activity, with the concentration that caused 50% inhibition (IC50) (101 µM). MA was the second most potent inhibitor following DCF, but KP, SA, or ASA had little inhibitory effect on the ovulation of the follicles. The in vitro antiovulatory activity of five NSAIDs showed good correlation with data published on the inhibitory activity on human COX-2. Second, we selected DCF and SA as the most and least potent NSAIDs, respectively, and examined the effects on reproduction of intact fish in order to evaluate whether the ovulation assay was a reasonable predictor of potential reproductive effects in fish. Females exposed to DCF showed a concentration-dependent decrease in the number of spawned eggs and an increment in the gonadosomatic index (GSI), possibly due to an anovulation in the females. In contrast, neither fecundity nor the GSI of females decreased at up to 20 mg/L of SA, at which acute lethality to medaka was induced. In conclusion, the medaka ovulation assay reflected the potency of NSAID-induced antiovulatory activity and may thus serve as an in vitro model for the prediction of NSAID-induced reproductive toxicity. © 2015 Wiley Periodicals, Inc. Environ Toxicol 31: 1710-1719, 2016.
- Published
- 2015
49. A case of very-long-chain acyl-coenzyme A dehydrogenase deficiency with novel compound heterozygous mutations
- Author
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Fumiko Yamamoto, Seiji Yamaguchi, Junichi Furuta, Akira Tamaoka, Kenji Yamada, Kiyotaka Nakamagoe, and Akiko Ishii
- Subjects
0301 basic medicine ,biology ,business.industry ,030105 genetics & heredity ,medicine.disease ,Compound heterozygosity ,03 medical and health sciences ,0302 clinical medicine ,Neurology ,Biochemistry ,ACADVL gene ,Very long-chain acyl-coenzyme A dehydrogenase deficiency ,biology.protein ,Medicine ,Creatine kinase ,Neurology (clinical) ,business ,Rhabdomyolysis ,030217 neurology & neurosurgery - Published
- 2016
50. The Functional Characterization of Long Noncoding RNASPRY4-IT1in Human Melanoma Cells
- Author
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John S. Mattick, Subramaniam S. Govindarajan, Maya Ratnam, Bongyong Lee, Ranjan J. Perera, Muhammad Aftab, Fumiko Yamamoto, John Shelley, Brian N. Finck, Joseph Mazar, Marcel E. Dinger, Wei Zhao, Xianlin Han, Ahmad M. Khalil, and Sheila Collins
- Subjects
Apoptosis ,Nerve Tissue Proteins ,Biology ,Phosphatidate ,Downregulation and upregulation ,RNA interference ,Carnitine ,Cell Line, Tumor ,melanoma ,Humans ,Neoplasm Invasiveness ,long noncoding RNA ,Diacylglycerol O-Acyltransferase ,RNA, Small Interfering ,Triglycerides ,Cell Proliferation ,Diacylglycerol kinase ,Gene knockdown ,Intracellular Signaling Peptides and Proteins ,Nuclear Proteins ,Lipid metabolism ,Shotgun lipidomics ,Lipid Metabolism ,Molecular biology ,3. Good health ,Oncology ,Lipotoxicity ,lipids (amino acids, peptides, and proteins) ,RNA Interference ,RNA, Long Noncoding ,Research Paper - Abstract
// Joseph Mazar 1 , Wei Zhao 1 , Ahmad M. Khalil 2 , Bongyong Lee 1 , John Shelley 1 , Subramaniam S. Govindarajan 1 , Fumiko Yamamoto 1 , Maya Ratnam 2 , Muhammad Nauman Aftab 1 , Sheila Collins 1 , Brian N. Finck 3 , Xianlin Han 1 , John S. Mattick 4 , Marcel E. Dinger 4 , and Ranjan J. Perera 1* 1 Sanford-Burnham Medical Research Institute, Orlando, FL 32827, USA 2 Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA 3 Division of Geriatrics and Nutritional Sciences, Washington University School of Medicine, St. Louis, MO 63110, USA 4 Garvan Institute of Medical Research and St Vincent’s Clinical School, University of New South Wales, Darlinghurst NSW 2010, Australia Correspondence: Ranjan J. Perera, email: // Keywords : long noncoding RNA, melanoma Received : January 23, 2014 Accepted : March 24 2014 Published : March 26, 2014 Abstract Expression of the long noncoding RNA (lncRNA) SPRY4-IT1 is low in normal human melanocytes but high in melanoma cells. siRNA knockdown of SPRY4-IT1 blocks melanoma cell invasion and proliferation, and increases apoptosis. To investigate its function further, we affinity purified SPRY4-IT1 from melanoma cells and used mass spectrometry to identify the protein lipin 2, an enzyme that converts phosphatidate to diacylglycerol (DAG), as a major binding partner. SPRY4-IT1 knockdown increases the accumulation of lipin2 protein and upregulate the expression of diacylglycerol O-acyltransferase 2 (DGAT2) an enzyme involved in the conversion of DAG to triacylglycerol (TAG). When SPRY4-IT1 knockdown and control melanoma cells were subjected to shotgun lipidomics, an MS-based assay that permits the quantification of changes in the cellular lipid profile, we found that SPRY4-IT1 knockdown induced significant changes in a number of lipid species, including increased acyl carnitine, fatty acyl chains, and triacylglycerol (TAG). Together, these results suggest the possibility that SPRY4-IT1 knockdown may induce apoptosis via lipin 2-mediated alterations in lipid metabolism leading to cellular lipotoxicity.
- Published
- 2014
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