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597 results on '"Fujiyama, Asao"'

2. Genome assembly of Genji firefly (Nipponoluciola cruciata) reveals novel luciferase-like luminescent proteins without peroxisome targeting signal

Author

Fukuta, Kentaro, primary, Kato, Dai-ichiro, additional, Maeda, Juri, additional, Tsuruta, Atsuhiro, additional, Suzuki, Hirobumi, additional, Nagano, Yukio, additional, Tsukamoto, Hisao, additional, Niwa, Kazuki, additional, Terauchi, Makoto, additional, Toyoda, Atsushi, additional, Fujiyama, Asao, additional, and Noguchi, Hideki, additional

Published
2024
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3. Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome

Author

Bowman, John L, Kohchi, Takayuki, Yamato, Katsuyuki T, Jenkins, Jerry, Shu, Shengqiang, Ishizaki, Kimitsune, Yamaoka, Shohei, Nishihama, Ryuichi, Nakamura, Yasukazu, Berger, Frédéric, Adam, Catherine, Aki, Shiori Sugamata, Althoff, Felix, Araki, Takashi, Arteaga-Vazquez, Mario A, Balasubrmanian, Sureshkumar, Barry, Kerrie, Bauer, Diane, Boehm, Christian R, Briginshaw, Liam, Caballero-Perez, Juan, Catarino, Bruno, Chen, Feng, Chiyoda, Shota, Chovatia, Mansi, Davies, Kevin M, Delmans, Mihails, Demura, Taku, Dierschke, Tom, Dolan, Liam, Dorantes-Acosta, Ana E, Eklund, D Magnus, Florent, Stevie N, Flores-Sandoval, Eduardo, Fujiyama, Asao, Fukuzawa, Hideya, Galik, Bence, Grimanelli, Daniel, Grimwood, Jane, Grossniklaus, Ueli, Hamada, Takahiro, Haseloff, Jim, Hetherington, Alexander J, Higo, Asuka, Hirakawa, Yuki, Hundley, Hope N, Ikeda, Yoko, Inoue, Keisuke, Inoue, Shin-ichiro, Ishida, Sakiko, Jia, Qidong, Kakita, Mitsuru, Kanazawa, Takehiko, Kawai, Yosuke, Kawashima, Tomokazu, Kennedy, Megan, Kinose, Keita, Kinoshita, Toshinori, Kohara, Yuji, Koide, Eri, Komatsu, Kenji, Kopischke, Sarah, Kubo, Minoru, Kyozuka, Junko, Lagercrantz, Ulf, Lin, Shih-Shun, Lindquist, Erika, Lipzen, Anna M, Lu, Chia-Wei, De Luna, Efraín, Martienssen, Robert A, Minamino, Naoki, Mizutani, Masaharu, Mizutani, Miya, Mochizuki, Nobuyoshi, Monte, Isabel, Mosher, Rebecca, Nagasaki, Hideki, Nakagami, Hirofumi, Naramoto, Satoshi, Nishitani, Kazuhiko, Ohtani, Misato, Okamoto, Takashi, Okumura, Masaki, Phillips, Jeremy, Pollak, Bernardo, Reinders, Anke, Rövekamp, Moritz, Sano, Ryosuke, Sawa, Shinichiro, Schmid, Marc W, Shirakawa, Makoto, Solano, Roberto, Spunde, Alexander, Suetsugu, Noriyuki, Sugano, Sumio, Sugiyama, Akifumi, Sun, Rui, Suzuki, Yutaka, and Takenaka, Mizuki

Subjects
Biological Sciences, Genetics, Life on Land, Adaptation, Biological, Biological Evolution, Embryophyta, Gene Expression Regulation, Plant, Genome, Plant, Marchantia, Molecular Sequence Annotation, Signal Transduction, Transcription, Genetic, Marchantia polymorpha, auxin, charophycean algae, land plant evolution, sex chromosome, Medical and Health Sciences, Developmental Biology, Biological sciences, Biomedical and clinical sciences
Abstract

The evolution of land flora transformed the terrestrial environment. Land plants evolved from an ancestral charophycean alga from which they inherited developmental, biochemical, and cell biological attributes. Additional biochemical and physiological adaptations to land, and a life cycle with an alternation between multicellular haploid and diploid generations that facilitated efficient dispersal of desiccation tolerant spores, evolved in the ancestral land plant. We analyzed the genome of the liverwort Marchantia polymorpha, a member of a basal land plant lineage. Relative to charophycean algae, land plant genomes are characterized by genes encoding novel biochemical pathways, new phytohormone signaling pathways (notably auxin), expanded repertoires of signaling pathways, and increased diversity in some transcription factor families. Compared with other sequenced land plants, M. polymorpha exhibits low genetic redundancy in most regulatory pathways, with this portion of its genome resembling that predicted for the ancestral land plant. PAPERCLIP.

Published
2017

4. Genome evolution in the allotetraploid frog Xenopus laevis

Author

Session, Adam M, Uno, Yoshinobu, Kwon, Taejoon, Chapman, Jarrod A, Toyoda, Atsushi, Takahashi, Shuji, Fukui, Akimasa, Hikosaka, Akira, Suzuki, Atsushi, Kondo, Mariko, van Heeringen, Simon J, Quigley, Ian, Heinz, Sven, Ogino, Hajime, Ochi, Haruki, Hellsten, Uffe, Lyons, Jessica B, Simakov, Oleg, Putnam, Nicholas, Stites, Jonathan, Kuroki, Yoko, Tanaka, Toshiaki, Michiue, Tatsuo, Watanabe, Minoru, Bogdanovic, Ozren, Lister, Ryan, Georgiou, Georgios, Paranjpe, Sarita S, van Kruijsbergen, Ila, Shu, Shengquiang, Carlson, Joseph, Kinoshita, Tsutomu, Ohta, Yuko, Mawaribuchi, Shuuji, Jenkins, Jerry, Grimwood, Jane, Schmutz, Jeremy, Mitros, Therese, Mozaffari, Sahar V, Suzuki, Yutaka, Haramoto, Yoshikazu, Yamamoto, Takamasa S, Takagi, Chiyo, Heald, Rebecca, Miller, Kelly, Haudenschild, Christian, Kitzman, Jacob, Nakayama, Takuya, Izutsu, Yumi, Robert, Jacques, Fortriede, Joshua, Burns, Kevin, Lotay, Vaneet, Karimi, Kamran, Yasuoka, Yuuri, Dichmann, Darwin S, Flajnik, Martin F, Houston, Douglas W, Shendure, Jay, DuPasquier, Louis, Vize, Peter D, Zorn, Aaron M, Ito, Michihiko, Marcotte, Edward M, Wallingford, John B, Ito, Yuzuru, Asashima, Makoto, Ueno, Naoto, Matsuda, Yoichi, Veenstra, Gert Jan C, Fujiyama, Asao, Harland, Richard M, Taira, Masanori, and Rokhsar, Daniel S

Subjects
Biological Sciences, Bioinformatics and Computational Biology, Genetics, Biotechnology, Human Genome, Animals, Chromosomes, Conserved Sequence, DNA Transposable Elements, Diploidy, Evolution, Molecular, Female, Gene Deletion, Gene Expression Profiling, Genome, Karyotype, Molecular Sequence Annotation, Mutagenesis, Phylogeny, Pseudogenes, Tetraploidy, Xenopus, Xenopus laevis, General Science & Technology
Abstract

To explore the origins and consequences of tetraploidy in the African clawed frog, we sequenced the Xenopus laevis genome and compared it to the related diploid X. tropicalis genome. We characterize the allotetraploid origin of X. laevis by partitioning its genome into two homoeologous subgenomes, marked by distinct families of 'fossil' transposable elements. On the basis of the activity of these elements and the age of hundreds of unitary pseudogenes, we estimate that the two diploid progenitor species diverged around 34 million years ago (Ma) and combined to form an allotetraploid around 17-18 Ma. More than 56% of all genes were retained in two homoeologous copies. Protein function, gene expression, and the amount of conserved flanking sequence all correlate with retention rates. The subgenomes have evolved asymmetrically, with one chromosome set more often preserving the ancestral state and the other experiencing more gene loss, deletion, rearrangement, and reduced gene expression.

Published
2016

6. Hemichordate genomes and deuterostome origins.

Author

Simakov, Oleg, Kawashima, Takeshi, Marlétaz, Ferdinand, Jenkins, Jerry, Koyanagi, Ryo, Mitros, Therese, Hisata, Kanako, Bredeson, Jessen, Shoguchi, Eiichi, Gyoja, Fuki, Yue, Jia-Xing, Chen, Yi-Chih, Freeman, Robert M, Sasaki, Akane, Hikosaka-Katayama, Tomoe, Sato, Atsuko, Fujie, Manabu, Baughman, Kenneth W, Levine, Judith, Gonzalez, Paul, Cameron, Christopher, Fritzenwanker, Jens H, Pani, Ariel M, Goto, Hiroki, Kanda, Miyuki, Arakaki, Nana, Yamasaki, Shinichi, Qu, Jiaxin, Cree, Andrew, Ding, Yan, Dinh, Huyen H, Dugan, Shannon, Holder, Michael, Jhangiani, Shalini N, Kovar, Christie L, Lee, Sandra L, Lewis, Lora R, Morton, Donna, Nazareth, Lynne V, Okwuonu, Geoffrey, Santibanez, Jireh, Chen, Rui, Richards, Stephen, Muzny, Donna M, Gillis, Andrew, Peshkin, Leonid, Wu, Michael, Humphreys, Tom, Su, Yi-Hsien, Putnam, Nicholas H, Schmutz, Jeremy, Fujiyama, Asao, Yu, Jr-Kai, Tagawa, Kunifumi, Worley, Kim C, Gibbs, Richard A, Kirschner, Marc W, Lowe, Christopher J, Satoh, Noriyuki, Rokhsar, Daniel S, and Gerhart, John

Subjects
Animals, Chordata, Nonvertebrate, Echinodermata, Transforming Growth Factor beta, Evolution, Molecular, Phylogeny, Signal Transduction, Conserved Sequence, Synteny, Multigene Family, Genome, Chordata, Nonvertebrate, Evolution, Molecular, General Science & Technology
Abstract

Acorn worms, also known as enteropneust (literally, 'gut-breathing') hemichordates, are marine invertebrates that share features with echinoderms and chordates. Together, these three phyla comprise the deuterostomes. Here we report the draft genome sequences of two acorn worms, Saccoglossus kowalevskii and Ptychodera flava. By comparing them with diverse bilaterian genomes, we identify shared traits that were probably inherited from the last common deuterostome ancestor, and then explore evolutionary trajectories leading from this ancestor to hemichordates, echinoderms and chordates. The hemichordate genomes exhibit extensive conserved synteny with amphioxus and other bilaterians, and deeply conserved non-coding sequences that are candidates for conserved gene-regulatory elements. Notably, hemichordates possess a deuterostome-specific genomic cluster of four ordered transcription factor genes, the expression of which is associated with the development of pharyngeal 'gill' slits, the foremost morphological innovation of early deuterostomes, and is probably central to their filter-feeding lifestyle. Comparative analysis reveals numerous deuterostome-specific gene novelties, including genes found in deuterostomes and marine microbes, but not other animals. The putative functions of these genes can be linked to physiological, metabolic and developmental specializations of the filter-feeding ancestor.

Published
2015

7. OryzaGenome2.1: Database of Diverse Genotypes in Wild Oryza Species

Author

Kajiya-Kanegae, Hiromi, Ohyanagi, Hajime, Ebata, Toshinobu, Tanizawa, Yasuhiro, Onogi, Akio, Sawada, Yuji, Hirai, Masami Yokota, Wang, Zi-Xuan, Han, Bin, Toyoda, Atsushi, Fujiyama, Asao, Iwata, Hiroyoshi, Tsuda, Katsutoshi, Suzuki, Toshiya, Nosaka-Takahashi, Misuzu, Nonomura, Ken-ichi, Nakamura, Yasukazu, Kawamoto, Shoko, Kurata, Nori, and Sato, Yutaka

Published
2021
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8. Genomic and phenotypic characterisation of a wild Medaka population: Establishing an isogenic population genetic resource in fish

Author

Spivakov, Mikhail, Auer, Thomas O., Peravali, Ravindra, Dunham, Ian, Dolle, Dirk, Fujiyama, Asao, Toyoda, Atsushi, Aizu, Tomoyuki, Minakuchi, Yohei, Loosli, Felix, Naruse, Kiyoshi, Birney, Ewan, and Wittbrodt, Joachim

Subjects
Quantitative Biology - Genomics, Quantitative Biology - Populations and Evolution
Abstract

Background Oryzias latipes (Medaka) has been established as a vertebrate genetic model for over a century, and has recently been rediscovered outside its native Japan. The power of new sequencing methods now makes it possible to reinvigorate Medaka genetics, in particular by establishing a near-isogenic panel derived from a single wild population. Results Here we characterise the genomes of wild Medaka catches obtained from a single Southern Japanese population in Kiyosu as a precursor for the establishment of a near isogenic panel of wild lines. The population is free of significant detrimental population structure, and has advantageous linkage disequilibrium properties suitable for establishment of the proposed panel. Analysis of morphometric traits in five representative inbred strains suggests phenotypic mapping will be feasible in the panel. In addition high throughput genome sequencing of these Medaka strains confirms their evolutionary relationships on lines of geographic separation and provides further evidence that there has been little significant interbreeding between the Southern and Northern Medaka population since the Southern/Northern population split. The sequence data suggest that the Southern Japanese Medaka existed as a larger older population which went through a relatively recent bottleneck around 10,000 years ago. In addition we detect patterns of recent positive selection in the Southern population. Conclusions These data indicate that the genetic structure of the Kiyosu Medaka samples are suitable for the establishment of a vertebrate near isogenic panel and therefore inbreeding of 200 lines based on this population has commenced. Progress of this project can be tracked at http://www.ebi.ac.uk/birney-srv/medaka-ref-panel, Comment: 5 figures, 30 pages

Published
2013

12. Construction and Analysis of a Human-Chimpanzee Comparative Clone Map

Author

Fujiyama, Asao, Watanabe, Hidemi, Toyoda, Atsushi, Taylor, Todd D., Itoh, Takehiko, Tsai, Shih-Feng, Park, Hong-Seog, Yaspo, Marie-Laure, Lehrach, Hans, Chen, Zhu, Fu, Gang, Saitou, Naruya, Osoegawa, Kazutoyo, de Jong, Pieter J., Suto, Yumiko, Hattori, Masahira, and Sakaki, Yoshiyuki

Published
2002

13. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants

Author

Rensing, Stefan A., Lang, Daniel, Zimmer, Andreas D., Terry, Astrid, Salamov, Asaf, Shapiro, Harris, Nishiyama, Tomaoki, Perroud, Pierre-Francois, Lindquist, Erika A., Kamisugi, Yasuko, Tanahashi, Takako, Sakakibara, Keiko, Fujita, Tomomichi, Oishi, Kazuko, Shin, Tadasu, Kuroki, Yoko, Toyoda, Atsushi, Suzuki, Yutaka, Hashimoto, Shin-ichi, Yamaguchi, Kazuo, Sugano, Sumio, Kohara, Yuji, Fujiyama, Asao, Anterola, Aldwin, Aoki, Setsuyuki, Ashton, Neil, Barbazuk, W. Brad, Barker, Elizabeth, Bennetzen, Jeffrey L., Blankenship, Robert, Cho, Sung Hyun, Dutcher, Susan K., Estelle, Mark, Fawcett, Jeffrey A., Gundlach, Heidrum, Hanada, Kousuke, Melkozernov, Alexander, Murata, Takashi, Nelson, David R., Pils, Birgit, Prigge, Michael, Reiss, Bernd, Renner, Tanya, Rombauts, Stephane, Rushton, Paul J., Sanderfoot, Anton, Schween, Gabriele, Shiu, Shin-Han, Stueber, Kurt, Theodoulou, Frederica L., Tu, Hank, Peer, Yves Van de, Verrier, Paul J., Waters, Elizabeth, Wood, Andrew, Yang, Lixing, Cove, David, Cuming, Andrew C., Hasebe, Mitsayasu, Lucas, Susan, Mishler, Brent D., Reski, Ralf, Grigoriev, Igor V., Quatrano, Rakph S., and Boore, Jeffrey L.

Abstract

We report the draft genome sequence of the model moss Physcomitrella patens and compare its features with those of flowering plants, from which it is separated by more than 400 million years, and unicellular aquatic algae. This comparison reveals genomic changes concomitant with the evolutionary movement to land, including a general increase in gene family complexity; loss of genes associated with aquatic environments (e.g., flagellar arms); acquisition of genes for tolerating terrestrial stresses (e.g., variation in temperature and water availability); and the development of the auxin and abscisic acid signaling pathways for coordinating multicellular growth and dehydration response. The Physcomitrella genome provides a resource for phylogenetic inferences about gene function and for experimental analysis of plant processes through this plant's unique facility for reverse genetics.

Published
2007

14. The Genome of Amphioxus and the Ancestral Proto-chordate

Author

Putnam, Nicholas, Kawashima, Takeshi, Terry, Astrid, You, Sky, Satou, Yutaka, Lindquist, Erika, Grigoriev, Igor, Gibson-Brown, Jeremy, Bronner-Frasier, Marianne, Holland, Peter, Fujiyama, Asao, Satoh, Nori, Holland, Linda, and Rokhsar, Daniel

Subjects
amphioxus ancestral chordates cephalochordates
Abstract

Lancelets ("amphioxus") are the modern survivors of an ancient chordate lineage, the cephalochordates, with a fossil record dating back to the Cambrian. We describe the structure and gene content of the highly polymorphic genome of the Florida lancelet, in the context of the known genomes from the other chordate lineages, including the tunicate Ciona, human, and other vertebrates. This whole-genome comparison illuminates the murky relationship between the three principal chordate subphyla (tunicates, cephalochordates, and vertebrates), and provides a new perspective on the nature of the chordate common ancestor and key events in the emergence of vertebrates. The amphioxus sequence allows reconstruction of not only the gene complement of the ancestral chordate, but also a partial reconstruction of its genomic organization and a description of subsequent duplications and reorganizations in the vertebrate lineage.

Published
2006

15. Expansions of intronic TTTCA and TTTTA repeats in benign adult familial myoclonic epilepsy

Author

Ishiura, Hiroyuki, Doi, Koichiro, Mitsui, Jun, Yoshimura, Jun, Matsukawa, Miho Kawabe, Fujiyama, Asao, Toyoshima, Yasuko, Kakita, Akiyoshi, Takahashi, Hitoshi, Suzuki, Yutaka, Sugano, Sumio, Qu, Wei, Ichikawa, Kazuki, Yurino, Hideaki, Higasa, Koichiro, Shibata, Shota, Mitsue, Aki, Tanaka, Masaki, Ichikawa, Yaeko, Takahashi, Yuji, Date, Hidetoshi, Matsukawa, Takashi, Kanda, Junko, Nakamoto, Fumiko Kusunoki, Higashihara, Mana, Abe, Koji, Koike, Ryoko, Sasagawa, Mutsuo, Kuroha, Yasuko, Hasegawa, Naoya, Kanesawa, Norio, Kondo, Takayuki, Hitomi, Takefumi, Tada, Masayoshi, Takano, Hiroki, Saito, Yutaka, Sanpei, Kazuhiro, Onodera, Osamu, Nishizawa, Masatoyo, Nakamura, Masayuki, Yasuda, Takeshi, Sakiyama, Yoshio, Otsuka, Mieko, Ueki, Akira, Kaida, Ken-ichi, Shimizu, Jun, Hanajima, Ritsuko, Hayashi, Toshihiro, Terao, Yasuo, Inomata-Terada, Satomi, Hamada, Masashi, Shirota, Yuichiro, Kubota, Akatsuki, Ugawa, Yoshikazu, Koh, Kishin, Takiyama, Yoshihisa, Ohsawa-Yoshida, Natsumi, Ishiura, Shoichi, Yamasaki, Ryo, Tamaoka, Akira, Akiyama, Hiroshi, Otsuki, Taisuke, Sano, Akira, Ikeda, Akio, Goto, Jun, Morishita, Shinichi, and Tsuji, Shoji

Published
2018
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20. A divergent RWP‐RK transcription factor determines mating type in heterothallic Closterium

Author

Sekimoto, Hiroyuki, primary, Komiya, Ayumi, additional, Tsuyuki, Natsumi, additional, Kawai, Junko, additional, Kanda, Naho, additional, Ootsuki, Ryo, additional, Suzuki, Yutaka, additional, Toyoda, Atsushi, additional, Fujiyama, Asao, additional, Kasahara, Masahiro, additional, Abe, Jun, additional, Tsuchikane, Yuki, additional, and Nishiyama, Tomoaki, additional

Published
2023
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25. Semantic Wiki as a Lightweight Knowledge Management System

Author

Muljadi, Hendry, Takeda, Hideaki, Shakya, Aman, Kawamoto, Shoko, Kobayashi, Satoshi, Fujiyama, Asao, Ando, Koichi, Hutchison, David, editor, Kanade, Takeo, editor, Kittler, Josef, editor, Kleinberg, Jon M., editor, Mattern, Friedemann, editor, Mitchell, John C., editor, Naor, Moni, editor, Nierstrasz, Oscar, editor, Pandu Rangan, C., editor, Steffen, Bernhard, editor, Sudan, Madhu, editor, Terzopoulos, Demetri, editor, Tygar, Dough, editor, Vardi, Moshe Y., editor, Weikum, Gerhard, editor, Mizoguchi, Riichiro, editor, Shi, Zhongzhi, editor, and Giunchiglia, Fausto, editor

Published
2006
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28. Role for piRNAs and Noncoding RNA in de Novo DNA Methylation of the Imprinted Mouse Rasgrf1 Locus

Author

Watanabe, Toshiaki, Tomizawa, Shin-ichi, Mitsuya, Kohzoh, Totoki, Yasushi, Yamamoto, Yasuhiro, Kuramochi-Miyagawa, Satomi, Iida, Naoka, Hoki, Yuko, Murphy, Patrick J., Toyoda, Atsushi, Gotoh, Kengo, Hiura, Hitoshi, Arima, Takahiro, Fujiyama, Asao, Sado, Takashi, Shibata, Tatsuhiro, Nakano, Toru, Lin, Haifan, Ichiyanagi, Kenji, Soloway, Paul D., and Sasaki, Hiroyuki

Published
2011
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30. Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein

Author

Hashimoto, Takuma, Horikawa, Daiki D., Saito, Yuki, Kuwahara, Hirokazu, Kozuka-Hata, Hiroko, Shin-I, Tadasu, Minakuchi, Yohei, Ohishi, Kazuko, Motoyama, Ayuko, Aizu, Tomoyuki, Enomoto, Atsushi, Kondo, Koyuki, Tanaka, Sae, Hara, Yuichiro, Koshikawa, Shigeyuki, Sagara, Hiroshi, Miura, Toru, Yokobori, Shin-ichi, Miyagawa, Kiyoshi, Suzuki, Yutaka, Kubo, Takeo, Oyama, Masaaki, Kohara, Yuji, Fujiyama, Asao, Arakawa, Kazuharu, Katayama, Toshiaki, Toyoda, Atsushi, and Kunieda, Takekazu

Published
2016
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31. The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

Author

Rensing, Stefan A., Lang, Daniel, Zimmer, Andreas D., Terry, Astrid, Salamov, Asaf, Shapiro, Harris, Nishiyama, Tomoaki, Perroud, Pierre-François, Lindquist, Erika A., Kamisugi, Yasuko, Tanahashi, Takako, Sakakibara, Keiko, Fujita, Tomomichi, Oishi, Kazuko, Shin-I, Tadasu, Kuroki, Yoko, Toyoda, Atsushi, Suzuki, Yutaka, Hashimoto, Shin-ichi, Yamaguchi, Kazuo, Sugano, Sumio, Kohara, Yuji, Fujiyama, Asao, Anterola, Aldwin, Aoki, Setsuyuki, Ashton, Neil, Barbazuk, W. Brad, Barker, Elizabeth, Bennetzen, Jeffrey L., Blankenship, Robert, Cho, Sung Hyun, Dutcher, Susan K., Estelle, Mark, Fawcett, Jeffrey A., Gundlach, Heidrun, Hanada, Kousuke, Heyl, Alexander, Hicks, Karen A., Hughes, Jon, Lohr, Martin, Mayer, Klaus, Melkozernov, Alexander, Murata, Takashi, Nelson, David R., Pils, Birgit, Prigge, Michael, Reiss, Bernd, Renner, Tanya, Rombauts, Stephane, Rushton, Paul J., Sanderfoot, Anton, Schween, Gabriele, Shiu, Shin-Han, Stueber, Kurt, Theodoulou, Frederica L., Tu, Hank, Van de Peer, Yves, Verrier, Paul J., Waters, Elizabeth, Wood, Andrew, Yang, Lixing, Cove, David, Cuming, Andrew C., Hasebe, Mitsuyasu, Lucas, Susan, Mishler, Brent D., Reski, Ralf, Grigoriev, Igor V., Quatrano, Ralph S., and Boore, Jeffrey L.

Published
2008
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32. MoG+: a database of genomic variations across three mouse subspecies for biomedical research

Author

Takada, Toyoyuki, primary, Fukuta, Kentaro, additional, Usuda, Daiki, additional, Kushida, Tatsuya, additional, Kondo, Shinji, additional, Kawamoto, Shoko, additional, Yoshiki, Atsushi, additional, Obata, Yuichi, additional, Fujiyama, Asao, additional, Toyoda, Atsushi, additional, Noguchi, Hideki, additional, Shiroishi, Toshihiko, additional, and Masuya, Hiroshi, additional

Published
2021
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38. A map of rice genome variation reveals the origin of cultivated rice

Author

Huang, Xuehui, Kurata, Nori, Wei, Xinghua, Wang, Zi-Xuan, Wang, Ahong, Zhao, Qiang, Zhao, Yan, Liu, Kunyan, Lu, Hengyun, Li, Wenjun, Guo, Yunli, Lu, Yiqi, Zhou, Congcong, Fan, Danlin, Weng, Qijun, Zhu, Chuanrang, Huang, Tao, Zhang, Lei, Wang, Yongchun, Feng, Lei, Furuumi, Hiroyasu, Kubo, Takahiko, Miyabayashi, Toshie, Yuan, Xiaoping, Xu, Qun, Dong, Guojun, Zhan, Qilin, Li, Canyang, Fujiyama, Asao, Toyoda, Atsushi, Lu, Tingting, Feng, Qi, Qian, Qian, Li, Jiayang, and Han, Bin

Published
2012
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40. Using the acropora digitifera genome to understand coral responses to environmental change

Author

Shinzato, Chuya, Shoguchi, Eiichi, Kawashima, Takeshi, Hamada, Mayuko, Hisata, Kanako, Tanaka, Makiko, Fujie, Manabu, Fujiwara, Mayuki, Koyanagi, Ryo, Ikuta, Tetsuro, Fujiyama, Asao, Miller, David J., and Satoh, Nori

Subjects
Water acidification -- Research, Coral reefs and islands -- Physiological aspects -- Research, Genomes -- Physiological aspects -- Research, Environmental issues, Science and technology, Zoology and wildlife conservation
Abstract

Despite the enormous ecological and economic importance of coral reefs, the keystone organisms in their establishment, the scleractinian corals, increasingly face a range of anthropogenic challenges including ocean acidification and [...]

Published
2011
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42. Genome-Wide Analysis of Intraspecific DNA Polymorphism in ‘Micro-Tom’, a Model Cultivar of Tomato (Solanum lycopersicum)

Author

Kobayashi, Masaaki, Nagasaki, Hideki, Garcia, Virginie, Just, Daniel, Bres, Cécile, Mauxion, Jean-Philippe, Le Paslier, Marie-Christine, Brunel, Dominique, Suda, Kunihiro, Minakuchi, Yohei, Toyoda, Atsushi, Fujiyama, Asao, Toyoshima, Hiromi, Suzuki, Takayuki, Igarashi, Kaori, Rothan, Christophe, Kaminuma, Eli, Nakamura, Yasukazu, Yano, Kentaro, and Aoki, Koh

Published
2014
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43. The amphioxus genome and the evolution of the chordate karyotype

Author

Putnam, Nicholas H., Butts, Thomas, Ferrier, David E.K., Furlong, Rebecca F., Hellsten, Uffe, Kawashima, Takeshi, Robinson-Rechavi, Marc, Shoguchi, Eiichi, Terry, Astrid, Yu, Jr-Kai, Benito-Gutierrez, Elia, Dubchak, Inna, Garcia-Fernandez, Jordi, Gibson-Brown, Jeremy J., Grigoriev, Igor V., Horton, Amy C., de Jong, Pieter J., Jurka, Jerzy, Kapitonov, Vladimir V., Kohara, Yuji, Kuroki, Yoko, Lindquist, Erika, Lucas, Susan, Osoegawa, Kazutoyo, Pennacchio, Len A., Salamov, Asaf A., Satou, Yutaka, Sauka-Spengler, Tatjana, Schmutz, Jeremy, Shin-I, Tadasu, Toyoda, Atsushi, Bronner-Fraser, Marianne, Fujiyama, Asao, Holland, Linda Z., Holland, Peter W.H., Satoh, Nori, and Rokhsar, Daniel S.

Subjects
Genomes -- Identification and classification -- Genetic aspects, Genetic variation -- Evaluation -- Genetic aspects, Karyotypes -- Identification and classification -- Genetic aspects, Environmental issues, Science and technology, Zoology and wildlife conservation, Identification and classification, Evaluation, Genetic aspects, Natural history
Abstract

Lancelets ('amphioxus') are the modern survivors of an ancient chordate lineage, with a fossil record dating back to the Cambrian period. Here we describe the structure and gene content of [...]

Published
2008

45. The medaka draft genome and insights into vertebrate genome evolution

Author

Kasahara, Masahiro, Naruse, Kiyoshi, Sasaki, Shin, Nakatani, Yoichiro, Qu, Wei, Ahsan, Budrul, Yamada, Tomoyuki, Nagayasu, Yukinobu, Doi, Koichiro, Kasai, Yasuhiro, Jindo, Tomoko, Kobayashi, Daisuke, Shimada, Atsuko, Toyoda, Atsushi, Kuroki, Yoko, Fujiyama, Asao, Sasaki, Takashi, Shimizu, Atsushi, Asakawa, Shuichi, Shimizu, Nobuyoshi, Hashimoto, Shin-ichi, Yang, Jun, Lee, Yongjun, Matsushima, Kouji, Sugano, Sumio, Sakaizumi, Mitsuru, Narita, Takanori, Ohishi, Kazuko, Haga, Shinobu, Ohta, Fumiko, Nomoto, Hisayo, Nogata, Keiko, Morishita, Tomomi, Endo, Tomoko, Shin-I, Tadasu, Takeda, Hiroyuki, Morishita, Shinichi, and Kohara, Yuji

Subjects
Environmental issues, Science and technology, Zoology and wildlife conservation
Abstract

Author(s): Masahiro Kasahara [1, 10]; Kiyoshi Naruse [2, 10]; Shin Sasaki [1, 10]; Yoichiro Nakatani [1, 10]; Wei Qu [1]; Budrul Ahsan [1]; Tomoyuki Yamada [1]; Yukinobu Nagayasu [1]; Koichiro [...]

Published
2007
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46. Human chromosome 11 DNA sequence and analysis including novel gene identification

Author

Taylor, Todd D., Noguchi, Hideki, Totoki, Yasushi, Toyoda, Atsushi, Kuroki, Yoko, Dewar, Ken, Lloyd, Christine, Itoh, Takehiko, Takeda, Tadayuki, Kim, Dae-Won, She, Xinwei, Barlow, Karen F., Bloom, Toby, Bruford, Elspeth, Chang, Jean L., Cuomo, Christina A., Eichler, Evan, FitzGerald, Michael G., Jaffe, David B., LaButti, Kurt, Nicol, Robert, Park, Hong-Seog, Seaman, Christopher, Sougnez, Carrie, Yang, Xiaoping, Zimmer, Andrew R., Zody, Michael C., Birren, Bruce W., Nusbaum, Chad, Fujiyama, Asao, Hattori, Masahira, Rogers, Jane, Lander, Eric S., and Sakaki, Yoshiyuki

Subjects
Environmental issues, Science and technology, Zoology and wildlife conservation
Abstract

Author(s): Todd D. Taylor (corresponding author) [1]; Hideki Noguchi [1, 10]; Yasushi Totoki [1]; Atsushi Toyoda [1]; Yoko Kuroki [1]; Ken Dewar [2, 10]; Christine Lloyd [3]; Takehiko Itoh [4]; [...]

Published
2006
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47. DNA sequence and analysis of human chromosome 18

Author

Nusbaum, Chad, Zody, Michael C., Borowsky, Mark L., Kamal, Michael, Kodira, Chinnappa D., Taylor, Todd D., Whittaker, Charles A., Chang, Jean L., Cuomo, Christina A., Dewar, Ken, FitzGerald, Michael G., Yang, Xiaoping, Abouelleil, Amr, Allen, Nicole R., Anderson, Scott, Bloom, Toby, Bugalter, Boris, Butler, Jonathan, Cook, April, DeCaprio, David, Engels, Reinhard, Garber, Manuel, Gnirke, Andreas, Hafez, Nabil, Hall, Jennifer L., Norman, Catherine Hosage, Itoh, Takehiko, Jaffe, David B., Kuroki, Yoko, Lehoczky, Jessica, Lui, Annie, Macdonald, Pendexter, Mauceli, Evan, Mikkelsen, Tarjei S., Naylor, Jerome W., Nicol, Robert, Nguyen, Cindy, Noguchi, Hideki, O'Leary, Sinead B., Piqani, Bruno, L Smith, Cherylyn, Talamas, Jessica A., Topham, Kerri, Totoki, Yasushi, Toyoda, Atsushi, Wain, Hester M., Young, Sarah K., Zeng, Qiandong, Zimmer, Andrew R., Fujiyama, Asao, Hattori, Masahira, Birren, Bruce W., Sakaki, Yoshiyuki, and Lander, Eric S.

Subjects
Environmental issues, Science and technology, Zoology and wildlife conservation
Abstract

Author(s): Chad Nusbaum (corresponding author) [1]; Michael C. Zody [1]; Mark L. Borowsky [1]; Michael Kamal [1]; Chinnappa D. Kodira [1]; Todd D. Taylor [2]; Charles A. Whittaker [1, 8]; [...]

Published
2005
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