167 results on '"Frisco, P"'
Search Results
2. Decoherent phonon effects in fast atom-surface scattering
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Frisco, L. and Gravielle, M. S.
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Condensed Matter - Materials Science - Abstract
Understanding the influence of phonon-mediated processes on grazing-incidence fast atom diffraction (GIFAD) patterns is relevant for its use as a surface analysis technique. In this work, we apply the Phonon-Surface Initial Value Representation (P0-SIVR) approximation to study lattice vibration effects on GIFAD patterns for the He-LiF(001) system at room temperature. The P0-SIVR approach is a semiquantum method that describes the zero-phonon atom-surface scattering including the contribution of intermediate phonon transitions. The main features introduced by thermal lattice vibrations in the angular distributions of the scattered helium atoms are investigated by considering normal energies in the 0.1 -3 eV range. In all the cases, thermal fluctuations introduce a wide polar spread that transforms the interference maxima into elongated strips. We found that the polar width of these fringes does not depend on the normal energy, as it was experimentally observed. In addition, when the normal energy increases, not only the relative intensities of interference peaks are affected by the crystal vibrations, but also the visibility of the interference structures, which disappear completely for normal energies approximately equal to or higher than 3 eV. These findings agree fairly well with the experimental data reported in Phys. Chem. Chem. Phys. 237615 (2021). However, it should be noticed that the simulated polar widths underestimate the experimentally-derived limit, suggesting that there are other mechanisms, such as inelastic phonon processes, that contribute to the polar dispersion of the GIFAD patterns., Comment: 7 pages, 6 figures
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- 2023
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3. Multisensory conflict affects body schema and reaching space
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Francesca Frisco, Ivana Frigione, Massimo Montanaro, and Angelo Maravita
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Multisensory conflict ,Body representation ,Body ownership ,Body schema ,Peripersonal space ,Reaching space ,Medicine ,Science - Abstract
Abstract Multisensory integration plays a crucial role in building the sense of body ownership, i.e., the perceptual status of one’s body for which the body is perceived as belonging to oneself. Temporal and spatial mismatching of visual and tactile signals coming from one’s body can reduce ownership feelings towards the body and its parts, i.e., produce disownership feelings. Here, we investigated whether visuo–tactile conflict also affects the sensorimotor representation of the body in space (i.e., body schema) and the perception of the space around the body in terms of action potentiality (i.e., reaching space). In two experiments, body schema (Experiment 1) and reaching space (Experiment 2) were assessed before and after either synchronous or asynchronous visuo–tactile stimulation. Results showed that the asynchronous condition, provoking multisensory conflict, caused disownership over one’s hand and concurrently affected the body schema and the reaching space. These findings indicate that body schema and reaching space could be dynamically shaped by the multisensory regularities that build up the sense of body ownership.
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- 2024
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4. Therapy-induced APOBEC3A drives evolution of persistent cancer cells
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Isozaki, Hideko, Sakhtemani, Ramin, Abbasi, Ammal, Nikpour, Naveed, Stanzione, Marcello, Oh, Sunwoo, Langenbucher, Adam, Monroe, Susanna, Su, Wenjia, Cabanos, Heidie Frisco, Siddiqui, Faria M, Phan, Nicole, Jalili, Pégah, Timonina, Daria, Bilton, Samantha, Gomez-Caraballo, Maria, Archibald, Hannah L, Nangia, Varuna, Dionne, Kristin, Riley, Amanda, Lawlor, Matthew, Banwait, Mandeep Kaur, Cobb, Rosemary G, Zou, Lee, Dyson, Nicholas J, Ott, Christopher J, Benes, Cyril, Getz, Gad, Chan, Chang S, Shaw, Alice T, Gainor, Justin F, Lin, Jessica J, Sequist, Lecia V, Piotrowska, Zofia, Yeap, Beow Y, Engelman, Jeffrey A, Lee, Jake June-Koo, Maruvka, Yosef E, Buisson, Rémi, Lawrence, Michael S, and Hata, Aaron N
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Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Genetics ,Lung Cancer ,Cancer ,Lung ,Aetiology ,5.1 Pharmaceuticals ,Development of treatments and therapeutic interventions ,2.1 Biological and endogenous factors ,Good Health and Well Being ,Humans ,Cytidine Deaminase ,DNA Breaks ,Double-Stranded ,Genomic Instability ,Lung Neoplasms ,Molecular Targeted Therapy ,Mutation ,Drug Resistance ,Neoplasm ,General Science & Technology - Abstract
Acquired drug resistance to anticancer targeted therapies remains an unsolved clinical problem. Although many drivers of acquired drug resistance have been identified1-4, the underlying molecular mechanisms shaping tumour evolution during treatment are incompletely understood. Genomic profiling of patient tumours has implicated apolipoprotein B messenger RNA editing catalytic polypeptide-like (APOBEC) cytidine deaminases in tumour evolution; however, their role during therapy and the development of acquired drug resistance is undefined. Here we report that lung cancer targeted therapies commonly used in the clinic can induce cytidine deaminase APOBEC3A (A3A), leading to sustained mutagenesis in drug-tolerant cancer cells persisting during therapy. Therapy-induced A3A promotes the formation of double-strand DNA breaks, increasing genomic instability in drug-tolerant persisters. Deletion of A3A reduces APOBEC mutations and structural variations in persister cells and delays the development of drug resistance. APOBEC mutational signatures are enriched in tumours from patients with lung cancer who progressed after extended responses to targeted therapies. This study shows that induction of A3A in response to targeted therapies drives evolution of drug-tolerant persister cells, suggesting that suppression of A3A expression or activity may represent a potential therapeutic strategy in the prevention or delay of acquired resistance to lung cancer targeted therapy.
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- 2023
5. Structural design and characterization of hybrid hierarchical lattice structures based on sheet-network Triply periodic Minimal surface topology
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Giuseppe Di Frisco, Ramin Yousefi Nooraie, Mario Guagliano, and Sara Bagherifard
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Cellular structures ,Multi-morphology ,Hierarchization ,Fused deposition modeling ,Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
The ability to adjust topological features of lattice structures offers a great potential to finely calibrate their physical and mechanical response to precisely meet specific requirements. This study explores a new topological design that leverages the internal porosity of Triply Periodic Minimal Surfaces (TPMS) unit cells to optimize and control their mechanical properties. A smaller-scale TPMS lattice structure was integrated within the internal volume of the sheet-network Schwarz Primitive TPMS cell, culminating in a hybrid hierarchical architecture. Various TPMS topologies with distinct mechanical behavior and varying relative density combinations were examined. Experimental and numerical approaches were developed to reveal the structure’s deformation behaviour and quantify stiffness, anisotropy, quasi-static uniaxial compressive strength, and energy absorption capacity. The topological design of the internal lattice was found to play a key role in defining the mechanical performance of the integrated structures, leading to enhanced energy absorption up to 4 times that of the reference structure. Moreover, all the studied hierarchical topologies exhibited a lower Emax/Emin ratio in comparison to the reference topology, indicating more isotropic performance of the hybrid designs (upto 40% reduction of anisotropy). The findings underscore the significant promise of hybrid hierarchical design methodologies in attaining lattice structures with tailored properties.
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- 2024
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6. Terrace effects in grazing-incidence fast atom diffraction from a LiF(001) surface
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Frisco, L. and Gravielle, M. S.
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Condensed Matter - Materials Science ,Physics - Atomic Physics - Abstract
The effect produced by surface defects on grazing-incidence fast atom diffraction (GIFAD) patterns is studied by considering the presence of terraces in a LiF(001) sample. For helium atoms impinging along the <110> direction of the LiF surface, we analyze the influence of a monolayer terrace with its edge oriented parallel or perpendicular to the axial channel. We found that the presence of an outward transverse step introduces a diffuse background above the Laue circle, which displays additional peaked structures. For inward transverse steps, instead, such a background is placed below the Laue circle, showing a much weaker intensity. On the other hand, parallel steps give rise to asymmetric angular distributions, which are completely confined to the Laue circle. Therefore, these theoretical results suggest that GIFAD might be used to characterize terrace defects., Comment: 9 pages, 12 figures
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- 2022
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7. aflow.org: A Web Ecosystem of Databases, Software and Tools
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Esters, Marco, Oses, Corey, Divilov, Simon, Eckert, Hagen, Friedrich, Rico, Hicks, David, Mehl, Michael J., Rose, Frisco, Smolyanyuk, Andriy, Calzolari, Arrigo, Campilongo, Xiomara, Toher, Cormac, and Curtarolo, Stefano
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Condensed Matter - Materials Science ,Computer Science - Databases - Abstract
To enable materials databases supporting computational and experimental research, it is critical to develop platforms that both facilitate access to the data and provide the tools used to generate/analyze it - all while considering the diversity of users' experience levels and usage needs. The recently formulated FAIR principles (Findable, Accessible, Interoperable, and Reusable) establish a common framework to aid these efforts. This article describes aflow_org, a web ecosystem developed to provide FAIR - compliant access to the AFLOW databases. Graphical and programmatic retrieval methods are offered, ensuring accessibility for all experience levels and data needs. aflow_org goes beyond data-access by providing applications to important features of the AFLOW software, assisting users in their own calculations without the need to install the entire high-throughput framework. Outreach commitments to provide AFLOW tutorials and materials science education to a global and diverse audiences will also be presented., Comment: 32 pages, 8 figures
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- 2022
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8. Do silvopastoral management practices affect biological pest control in oil palm plantations?
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Nobilly, Frisco, Atikah, Sharifah Nur, Yahya, Muhammad Syafiq, Jusoh, Shokri, Maxwell, Thomas M. R., Norhisham, Ahmad Razi, Tohiran, Kamil Azmi, Zulkifli, Raja, and Azhar, Badrul
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- 2023
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9. Addressing the Multiplicity of Solutions in Optical Lens Design as a Niching Evolutionary Algorithms Computational Challenge
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Kononova, Anna V., Shir, Ofer M., Tukker, Teus, Frisco, Pierluigi, Zeng, Shutong, and Bäck, Thomas
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Computer Science - Computational Engineering, Finance, and Science ,Computer Science - Artificial Intelligence - Abstract
Optimal Lens Design constitutes a fundamental, long-standing real-world optimization challenge. Potentially large number of optima, rich variety of critical points, as well as solid understanding of certain optimal designs per simple problem instances, provide altogether the motivation to address it as a niching challenge. This study applies established Niching-CMA-ES heuristic to tackle this design problem (6-dimensional Cooke triplet) in a simulation-based fashion. The outcome of employing Niching-CMA-ES `out-of-the-box' proves successful, and yet it performs best when assisted by a local searcher which accurately drives the search into optima. The obtained search-points are corroborated based upon concrete knowledge of this problem-instance, accompanied by gradient and Hessian calculations for validation. We extensively report on this computational campaign, which overall resulted in (i) the location of 19 out of 21 known minima within a single run, (ii) the discovery of 540 new optima. These are new minima similar in shape to 21 theoretical solutions, but some of them have better merit function value (unknown heretofore), (iii) the identification of numerous infeasibility pockets throughout the domain (also unknown heretofore). We conclude that niching mechanism is well-suited to address this problem domain, and hypothesize on the apparent multidimensional structures formed by the attained new solutions.
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- 2021
10. OPTIMADE, an API for exchanging materials data
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Andersen, Casper W., Armiento, Rickard, Blokhin, Evgeny, Conduit, Gareth J., Dwaraknath, Shyam, Evans, Matthew L., Fekete, Ádám, Gopakumar, Abhijith, Gražulis, Saulius, Merkys, Andrius, Mohamed, Fawzi, Oses, Corey, Pizzi, Giovanni, Rignanese, Gian-Marco, Scheidgen, Markus, Talirz, Leopold, Toher, Cormac, Winston, Donald, Aversa, Rossella, Choudhary, Kamal, Colinet, Pauline, Curtarolo, Stefano, Di Stefano, Davide, Draxl, Claudia, Er, Suleyman, Esters, Marco, Fornari, Marco, Giantomassi, Matteo, Govoni, Marco, Hautier, Geoffroy, Hegde, Vinay, Horton, Matthew K., Huck, Patrick, Huhs, Georg, Hummelshøj, Jens, Kariryaa, Ankit, Kozinsky, Boris, Kumbhar, Snehal, Liu, Mohan, Marzari, Nicola, Morris, Andrew J., Mostofi, Arash, Persson, Kristin A., Petretto, Guido, Purcell, Thomas, Ricci, Francesco, Rose, Frisco, Scheffler, Matthias, Speckhard, Daniel, Uhrin, Martin, Vaitkus, Antanas, Villars, Pierre, Waroquiers, David, Wolverton, Chris, Wu, Michael, and Yang, Xiaoyu
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Condensed Matter - Materials Science - Abstract
The Open Databases Integration for Materials Design (OPTIMADE) consortium has designed a universal application programming interface (API) to make materials databases accessible and interoperable. We outline the first stable release of the specification, v1.0, which is already supported by many leading databases and several software packages. We illustrate the advantages of the OPTIMADE API through worked examples on each of the public materials databases that support the full API specification., Comment: 11 pages, 1 table
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- 2021
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11. AFLOW-XtalFinder: a reliable choice to identify crystalline prototypes
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Hicks, David, Toher, Cormac, Ford, Denise C., Rose, Frisco, De Santo, Carlo, Levy, Ohad, Mehl, Michael J., and Curtarolo, Stefano
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Condensed Matter - Materials Science ,Physics - Computational Physics - Abstract
The accelerated growth rate of repository entries in crystallographic databases makes it arduous to identify and classify their prototype structures. The open-source AFLOW-XtalFinder package was developed to solve this problem. It symbolically maps structures into standard designations following the AFLOW Prototype Encyclopedia and calculates the internal degrees of freedom consistent with the International Tables for Crystallography. To ensure uniqueness, structures are analyzed and compared via symmetry, local atomic geometries, and crystal mapping techniques, simultaneously grouping them by similarity. The software i. distinguishes distinct crystal prototypes and atom decorations, ii. determines equivalent spin configurations, iii. reveals compounds with similar properties, and iv. guides the discovery of unexplored materials. The operations are accessible through a Python module ready for workflows, and through command line syntax. All the 4+ million compounds in the AFLOW.org repositories are mapped to their ideal prototype, allowing users to search database entries via symbolic structure-type. Furthermore, 15,000 unique structures - sorted by prevalence - are extracted from the AFLOW-ICSD catalog to serve as future prototypes in the Encyclopedia., Comment: 25 pages, 6 figures
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- 2020
12. Thermal effects on helium scattering from LiF(001) at grazing incidence
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Frisco, L. and Gravielle, M. S.
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Condensed Matter - Materials Science ,Physics - Atomic Physics - Abstract
Grazing-incidence fast atom diffraction (GIFAD) is an exceptionally sensitive method for surface analysis, which can be applied not only at room temperature but also at higher temperatures. In this work we use the He-LiF(001) system as benchmark to study the influence of temperature on GIFAD patterns from insulator surfaces. Our theoretical description is based on the Phonon-Surface Initial Value Representation (P0-SIVR) approximation, which is a semiquantum approach that includes the phonon contribution to the elastic scattering. Within the P0-SIVR approach the main features introduced by thermal lattice vibrations on the angular distributions of scattered projectiles are investigated as a function of the crystal temperature. We found that azimuthal and polar spectra are strongly affected by thermal fluctuations, which modify the relative intensities and the polar spread of the interference structures. These findings are relevant for the use of GIFAD in surface research. Moreover, the present results are contrasted with available experimental data at room temperature., Comment: 8 pages, 7 figures. arXiv admin note: text overlap with arXiv:1909.11038
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- 2020
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13. OPTIMADE, an API for exchanging materials data.
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Andersen, Casper W, Armiento, Rickard, Blokhin, Evgeny, Conduit, Gareth J, Dwaraknath, Shyam, Evans, Matthew L, Fekete, Ádám, Gopakumar, Abhijith, Gražulis, Saulius, Merkys, Andrius, Mohamed, Fawzi, Oses, Corey, Pizzi, Giovanni, Rignanese, Gian-Marco, Scheidgen, Markus, Talirz, Leopold, Toher, Cormac, Winston, Donald, Aversa, Rossella, Choudhary, Kamal, Colinet, Pauline, Curtarolo, Stefano, Di Stefano, Davide, Draxl, Claudia, Er, Suleyman, Esters, Marco, Fornari, Marco, Giantomassi, Matteo, Govoni, Marco, Hautier, Geoffroy, Hegde, Vinay, Horton, Matthew K, Huck, Patrick, Huhs, Georg, Hummelshøj, Jens, Kariryaa, Ankit, Kozinsky, Boris, Kumbhar, Snehal, Liu, Mohan, Marzari, Nicola, Morris, Andrew J, Mostofi, Arash A, Persson, Kristin A, Petretto, Guido, Purcell, Thomas, Ricci, Francesco, Rose, Frisco, Scheffler, Matthias, Speckhard, Daniel, Uhrin, Martin, Vaitkus, Antanas, Villars, Pierre, Waroquiers, David, Wolverton, Chris, Wu, Michael, and Yang, Xiaoyu
- Abstract
The Open Databases Integration for Materials Design (OPTIMADE) consortium has designed a universal application programming interface (API) to make materials databases accessible and interoperable. We outline the first stable release of the specification, v1.0, which is already supported by many leading databases and several software packages. We illustrate the advantages of the OPTIMADE API through worked examples on each of the public materials databases that support the full API specification.
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- 2021
14. The Impact of Hearing Loss and Its Treatment on Health-Related Quality of Life Utility: a Systematic Review with Meta-analysis
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Borre, Ethan D., Kaalund, Kamaria, Frisco, Nicholas, Zhang, Gloria, Ayer, Austin, Kelly-Hedrick, Margot, Reed, Shelby D., Emmett, Susan D., Francis, Howard, Tucci, Debara L., Wilson, Blake S., Kosinski, Andrzej S., Ogbuoji, Osondu, and Sanders Schmidler, Gillian D.
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- 2023
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15. Phonon contribution in grazing-incidence fast atom diffraction from insulator surfaces
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Frisco, L. and Gravielle, M. S.
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Physics - Atomic Physics - Abstract
We study the effect of crystal lattice vibrations on grazing-incidence fast atom diffraction (GIFAD) from insulator surfaces. To describe the phonon contribution to GIFAD we introduce a semiquantum method, named Phonon-Surface Initial Value Representation (P-SIVR), which represents the surface with a harmonic crystal model, while the scattering process is described by means of the Surface Initial Value Representation approach, including phonon excitations. Expressions for the partial scattering probabilities involving zero- and one- phonon exchange are derived. In particular, the P-SIVR approach for zero-phonon scattering is applied to study the influence of thermal lattice vibrations on GIFAD patterns for Ne/LiF(001) at room temperature. It is found that the thermal lattice fluctuations introduce a polar-angle spread into the projectile distributions, which can affect the relative intensities of the interference maxima, even giving rise to interference sub-patterns depending on the incidence conditions. Present results are in agreement with the available experiments., Comment: 10 pages, 7 figures
- Published
- 2019
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16. The Relationship Between Body Weight and Primary Healthcare Visits
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Newmyer, Lauren and Frisco, Michelle L.
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- 2023
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17. AFLOW-CHULL: Cloud-oriented platform for autonomous phase stability analysis
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Oses, Corey, Gossett, Eric, Hicks, David, Rose, Frisco, Mehl, Michael J., Perim, Eric, Takeuchi, Ichiro, Sanvito, Stefano, Scheffler, Matthias, Lederer, Yoav, Levy, Ohad, Toher, Cormac, and Curtarolo, Stefano
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Condensed Matter - Materials Science - Abstract
$\textit{A priori}$ prediction of phase stability of materials is a challenging practice, requiring knowledge of all energetically-competing structures at formation conditions. Large materials repositories $\unicode{x2014}$ housing properties of both experimental and hypothetical compounds $\unicode{x2014}$ offer a path to prediction through the construction of informatics-based, $\textit{ab-initio}$ phase diagrams. However, limited access to relevant data and software infrastructure has rendered thermodynamic characterizations largely peripheral, despite their continued success in dictating synthesizability. Herein, a new module is presented for autonomous thermodynamic stability analysis implemented within the open-source, $\textit{ab-initio}$ framework AFLOW. Powered by the AFLUX Search-API, AFLOW-CHULL leverages data of more than 1.8 million compounds currently characterized in the AFLOW.org repository and can be employed locally from any UNIX-like computer. The module integrates a range of functionality: the identification of stable phases and equivalent structures, phase coexistence, measures for robust stability, and determination of decomposition reactions. As a proof-of-concept, thorough thermodynamic characterizations have been performed for more than 1,300 binary and ternary systems, enabling the identification of several candidate phases for synthesis based on their relative stability criterion $\unicode{x2014}$ including 18 promising $C15_{b}$-type structures and two half-Heuslers. In addition to a full report included herein, an interactive, online web application has been developed showcasing the results of the analysis, and is located at aflow.org/aflow-chull., Comment: 22 pages, 7 figures
- Published
- 2018
18. Surface analysis via fast atom diffraction: pattern visibility and spot-beam contribution
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Frisco, L., Miraglia, J. E., and Gravielle, M. S.
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Physics - Atomic Physics ,Quantum Physics - Abstract
Grazing incidence fast atom diffraction (GIFAD or FAD) is a sensitive tool for surface analysis, which strongly relies on the quantum coherence of the incident beam. In this article the influence of the incidence conditions and the projectile mass on the visibility of the FAD patterns is addressed. Both parameters determine the transverse coherence length of the impinging particles, which governs the general features of FAD distributions. We show that by varying the impact energy, while keeping the same collimating setup and normal energy, it is possible to control the interference mechanism that prevails in FAD patterns. Furthermore, we demonstrate that the contribution coming from different positions of the focus point of the incident particles, which gives rise to the spot-beam effect, allows projectiles to explore different zones of a single crystallographic channel when a narrow surface area is coherently lighted. In this case the spot-beam effect gives also rise to a non-coherent background, which contributes to the gradual quantum-classical transition of FAD spectra. Present results are compared with available experimental data, making evident that the inclusion of focusing effects is necessary for the proper theoretical description of the experimental distributions., Comment: 10 pages, 9 figures
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- 2018
19. The AFLOW Fleet for Materials Discovery
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Toher, Cormac, Oses, Corey, Hicks, David, Gossett, Eric, Rose, Frisco, Nath, Pinku, Usanmaz, Demet, Ford, Denise C., Perim, Eric, Calderon, Camilo E., Plata, Jose J., Lederer, Yoav, Jahnátek, Michal, Setyawan, Wahyu, Wang, Shidong, Xue, Junkai, Rasch, Kevin, Chepulskii, Roman V., Taylor, Richard H., Gomez, Geena, Shi, Harvey, Supka, Andrew R., Orabi, Rabih Al Rahal Al, Gopal, Priya, Cerasoli, Frank T., Liyanage, Laalitha, Wang, Haihang, Siloi, Ilaria, Agapito, Luis A., Nyshadham, Chandramouli, Hart, Gus L. W, Carrete, Jesús, Legrain, Fleur, Mingo, Natalio, Zurek, Eva, Isayev, Olexandr, Tropsha, Alexander, Sanvito, Stefano, Hanson, Robert M., Takeuchi, Ichiro, Mehl, Michael J., Kolmogorov, Aleksey N., Yang, Kesong, D'Amico, Pino, Calzolari, Arrigo, Costa, Marcio, De Gennaro, Riccardo, Nardelli, Marco Buongiorno, Fornari, Marco, Levy, Ohad, and Curtarolo, Stefano
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Condensed Matter - Materials Science - Abstract
The traditional paradigm for materials discovery has been recently expanded to incorporate substantial data driven research. With the intent to accelerate the development and the deployment of new technologies, the AFLOW Fleet for computational materials design automates high-throughput first principles calculations, and provides tools for data verification and dissemination for a broad community of users. AFLOW incorporates different computational modules to robustly determine thermodynamic stability, electronic band structures, vibrational dispersions, thermo-mechanical properties and more. The AFLOW data repository is publicly accessible online at aflow.org, with more than 1.7 million materials entries and a panoply of queryable computed properties. Tools to programmatically search and process the data, as well as to perform online machine learning predictions, are also available., Comment: 14 pages, 8 figures
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- 2017
20. Author Correction: Identification of optimal dosing schedules of dacomitinib and osimertinib for a phase I/II trial in advanced EGFR-mutant non-small cell lung cancer
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Poels, Kamrine E., Schoenfeld, Adam J., Makhnin, Alex, Tobi, Yosef, Wang, Yuli, Frisco-Cabanos, Heidie, Chakrabarti, Shaon, Shi, Manli, Napoli, Chelsi, McDonald, Thomas O., Tan, Weiwei, Hata, Aaron, Weinrich, Scott L., Yu, Helena A., and Michor, Franziska
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- 2022
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21. Student-led anatomy seminars improve knowledge of surgical anatomy and teaching skills: a follow-up study
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Thornton, Steven W., Prabhu, Neel K., Jeffs, Sydney E., Jimenez-Contreras, Fabian, Frisco, Nicholas A., Gilmore, Brian F., Migaly, John, Leraas, Harold J., and Tracy, Elisabeth A.
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- 2022
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22. AFLOW-ML: A RESTful API for machine-learning predictions of materials properties
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Gossett, Eric, Toher, Cormac, Oses, Corey, Isayev, Olexandr, Legrain, Fleur, Rose, Frisco, Zurek, Eva, Carrete, Jesús, Mingo, Natalio, Tropsha, Alexander, and Curtarolo, Stefano
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Condensed Matter - Materials Science ,Physics - Computational Physics - Abstract
Machine learning approaches, enabled by the emergence of comprehensive databases of materials properties, are becoming a fruitful direction for materials analysis. As a result, a plethora of models have been constructed and trained on existing data to predict properties of new systems. These powerful methods allow researchers to target studies only at interesting materials $\unicode{x2014}$ neglecting the non-synthesizable systems and those without the desired properties $\unicode{x2014}$ thus reducing the amount of resources spent on expensive computations and/or time-consuming experimental synthesis. However, using these predictive models is not always straightforward. Often, they require a panoply of technical expertise, creating barriers for general users. AFLOW-ML (AFLOW $\underline{\mathrm{M}}$achine $\underline{\mathrm{L}}$earning) overcomes the problem by streamlining the use of the machine learning methods developed within the AFLOW consortium. The framework provides an open RESTful API to directly access the continuously updated algorithms, which can be transparently integrated into any workflow to retrieve predictions of electronic, thermal and mechanical properties. These types of interconnected cloud-based applications are envisioned to be capable of further accelerating the adoption of machine learning methods into materials development., Comment: 10 pages, 2 figures
- Published
- 2017
23. AFLUX: The LUX materials search API for the AFLOW data repositories
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Rose, Frisco, Toher, Cormac, Gossett, Eric, Oses, Corey, Nardelli, Marco Buongiorno, Fornari, Marco, and Curtarolo, Stefano
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Condensed Matter - Materials Science - Abstract
Automated computational materials science frameworks rapidly generate large quantities of materials data useful for accelerated materials design. We have extended the data oriented AFLOW-repository API (Application-Program-Interface, as described in Comput. Mater. Sci. 93, 178 (2014)) to enable programmatic access to search queries. A URI-based search API (Uniform Resource Identifier) is proposed for the construction of complex queries with the intent of allowing the remote creation and retrieval of customized data sets. It is expected that the new language AFLUX, acronym for Automatic Flow of LUX (light), will facilitate the creation of remote search operations on the AFLOW.org set of computational materials science data repositories., Comment: 13 pages, 3 figures, 4 tables
- Published
- 2016
24. Evaluating the experimental cultivation of edible mushroom, Volvariella volvacea underneath tree canopy in tropical agroforestry systems
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Kamaliah, Nurul, Salim, Sabiha, Abdullah, Sumaiyah, Nobilly, Frisco, Mat, Sapari, Norhisham, Ahmad R., Tohiran, Kamil Azmi, Zulkifli, Raja, Lechner, Alex M., and Azhar, Badrul
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- 2022
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25. Pneumatocele formation following COVID-19 pneumonia
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Miguel Sogbe, I. Madeleine Di Frisco, Ana Ezponda, and José Luis del Pozo
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Medicine (General) ,R5-920 - Published
- 2023
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26. Combining the AFLOW GIBBS and Elastic Libraries for efficiently and robustly screening thermo-mechanical properties of solids
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Toher, Cormac, Oses, Corey, Plata, Jose J., Hicks, David, Rose, Frisco, Levy, Ohad, de Jong, Maarten, Asta, Mark, Fornari, Marco, Nardelli, Marco Buongiorno, and Curtarolo, Stefano
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Condensed Matter - Materials Science - Abstract
Thorough characterization of the thermo-mechanical properties of materials requires difficult and time-consuming experiments. This severely limits the availability of data and it is one of the main obstacles for the development of effective accelerated materials design strategies. The rapid screening of new potential systems requires highly integrated, sophisticated and robust computational approaches. We tackled the challenge by surveying more than 3,000 crystalline solids within the AFLOW framework with the newly developed "Automatic Elasticity Library" combined with the previously implemented GIBBS method. The first extracts the mechanical properties from automatic self-consistent stress-strain calculations, while the latter employs those mechanical properties to evaluate the thermodynamics within the Debye model. The new thermo-elastic library is benchmarked against a set of 74 experimentally characterized systems to pinpoint a robust computational methodology for the evaluation of bulk and shear moduli, Poisson ratios, Debye temperatures, Gr\"uneisen parameters, and thermal conductivities of a wide variety of materials. The effect of different choices of equations of state is examined and the optimum combination of properties for the Leibfried-Schl\"omann prediction of thermal conductivity is identified, leading to improved agreement with experimental results than the GIBBS-only approach., Comment: 29 pages, 20 panel figures, 23 tables
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- 2016
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27. Using Public Landslide Inventories for Landslide Susceptibility Assessment at the Basin Scale: Application to the Torto River Basin (Central-Northern Sicily, Italy)
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Chiara Martinello, Claudio Mercurio, Chiara Cappadonia, Viviana Bellomo, Andrea Conte, Giampiero Mineo, Giulia Di Frisco, Grazia Azzara, Margherita Bufalini, Marco Materazzi, and Edoardo Rotigliano
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landslide susceptibility ,public landslide inventory ,MARS ,landslide incompleteness ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
In statistical landslide susceptibility evaluation, the quality of the model and its prediction image heavily depends on the quality of the landslide inventories used for calibration. However, regional-scale inventories made available by public territorial administrations are typically affected by an unknown grade of incompleteness and mapping inaccuracy. In this research, a procedure is proposed for verifying and solving such limits by applying a two-step susceptibility modeling procedure. In the Torto River basin (central-northern Sicily, Italy), using an available regional landslide inventory (267 slide and 78 flow cases), two SUFRA_1 models were first prepared and used to assign a landslide susceptibility level to each slope unit (SLU) in which the study area was partitioned. For each of the four susceptibility classes that were obtained, 30% of the mapping units were randomly selected and their stable/unstable status was checked by remote analysis. The new, increased inventories were finally used to recalibrate two SUFRA_2 models. The prediction skills of the SUFRA_1 and SUFRA_2 models were then compared by testing their accuracy in matching landslide distribution in a test sub-basin where a high-resolution systematic inventory had been prepared. According to the results, the strong limits of the SUFRA_1 models (sensitivity: 0.67 and 0.57 for slide and flow, respectively) were largely solved by the SUFRA_2 model (sensitivity: 1 for both slide and flow), suggesting the proposed procedure as a possibly suitable modeling strategy for regional susceptibility studies.
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- 2023
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28. OPTIMADE, an API for exchanging materials data
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Casper W. Andersen, Rickard Armiento, Evgeny Blokhin, Gareth J. Conduit, Shyam Dwaraknath, Matthew L. Evans, Ádám Fekete, Abhijith Gopakumar, Saulius Gražulis, Andrius Merkys, Fawzi Mohamed, Corey Oses, Giovanni Pizzi, Gian-Marco Rignanese, Markus Scheidgen, Leopold Talirz, Cormac Toher, Donald Winston, Rossella Aversa, Kamal Choudhary, Pauline Colinet, Stefano Curtarolo, Davide Di Stefano, Claudia Draxl, Suleyman Er, Marco Esters, Marco Fornari, Matteo Giantomassi, Marco Govoni, Geoffroy Hautier, Vinay Hegde, Matthew K. Horton, Patrick Huck, Georg Huhs, Jens Hummelshøj, Ankit Kariryaa, Boris Kozinsky, Snehal Kumbhar, Mohan Liu, Nicola Marzari, Andrew J. Morris, Arash A. Mostofi, Kristin A. Persson, Guido Petretto, Thomas Purcell, Francesco Ricci, Frisco Rose, Matthias Scheffler, Daniel Speckhard, Martin Uhrin, Antanas Vaitkus, Pierre Villars, David Waroquiers, Chris Wolverton, Michael Wu, and Xiaoyu Yang
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Science - Abstract
Abstract The Open Databases Integration for Materials Design (OPTIMADE) consortium has designed a universal application programming interface (API) to make materials databases accessible and interoperable. We outline the first stable release of the specification, v1.0, which is already supported by many leading databases and several software packages. We illustrate the advantages of the OPTIMADE API through worked examples on each of the public materials databases that support the full API specification.
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- 2021
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29. Identification of optimal dosing schedules of dacomitinib and osimertinib for a phase I/II trial in advanced EGFR-mutant non-small cell lung cancer
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Kamrine E. Poels, Adam J. Schoenfeld, Alex Makhnin, Yosef Tobi, Yuli Wang, Heidie Frisco-Cabanos, Shaon Chakrabarti, Manli Shi, Chelsi Napoli, Thomas O. McDonald, Weiwei Tan, Aaron Hata, Scott L. Weinrich, Helena A. Yu, and Franziska Michor
- Subjects
Science - Abstract
Osimertinib and dacomitinib are approved as first-line treatment of EGFR-mutant NSCLC but resistance can arise. Here, the authors use a computational model to identify an optimal dosing schedule for osimertinib and dacomitinib combination therapy that was confirmed tolerable and effective in an ongoing phase I clinical trial.
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- 2021
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30. The relationship between obesity and suicide ideation among young adults in the United States
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Carlyn Graham and Michelle Frisco
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Suicide ideation ,Body weight ,Obesity ,Young adulthood ,Mental health ,Public aspects of medicine ,RA1-1270 ,Social sciences (General) ,H1-99 - Abstract
The prevalence of both obesity and suicide ideation has risen in the last several decades among young adults in the United States (U.S.). Obesity is highly stigmatized in the U.S. and leads to discrimination and societal rejection, which suggests that obesity may increase the risk of suicide ideation. However, no U.S. population-representative studies to date have investigated the relationship between body weight and suicide ideation among young adults. We make this contribution by analyzing data from Wave III of the National Longitudinal Study of Adolescent to Adult Health (Add Health). Our results indicate obesity is not related to suicide ideation among young men or young women and overweight young men have lower odds of suicide ideation than normal weight young men. We speculate that these findings may be attributable to the very high U.S. overweight and obesity prevalence, which has made obesity more common despite stigmatization.
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- 2022
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31. EBV DNA increase in COVID-19 patients with impaired lymphocyte subpopulation count
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Stefania Paolucci, Irene Cassaniti, Federica Novazzi, Loretta Fiorina, Antonio Piralla, Giuditta Comolli, Raffaele Bruno, Renato Maserati, Roberto Gulminetti, Stefano Novati, Francesco Mojoli, Fausto Baldanti, R Bruno, M Mondelli, E Brunetti, A Di Matteo, E Seminari, L Maiocchi, V Zuccaro, L Pagnucco, B Mariani, S Ludovisi, R Lissandrin, A Parisi, P Sacchi, SFA Patruno, G Michelone, R Gulminetti, D Zanaboni, S Novati, R Maserati, P Orsolini, M Vecchia, M Sciarra, E Asperges, M Colaneri, A Di Filippo, M Sambo, S Biscarini, M Lupi, S Roda, TC Pieri, I Gallazzi, M Sachs, P Valsecchi, S Perlini, C Alfano, M Bonzano, F Briganti, G Crescenzi, AG Falchi, R Guarnone, B Guglielmana, E Maggi, I Martino, P Pettenazza, S Pioli di Marco, F Quaglia, A Sabena, F Salinaro, F Speciale, I Zunino, M De Lorenzo, G Secco, L Dimitry, G Cappa, I Maisak, B Chiodi, M Sciarrini, B Barcella, F Resta, L Moroni, G Vezzoni, L Scattaglia, E Boscolo, C Zattera, MF Tassi, V Capozza, D Vignaroli, M Bazzini, G Iotti, F Mojoli, M Belliato, L Perotti, S Mongodi, G Tavazzi, G Marseglia, A Licari, I Brambilla, D Barbarini, A Bruno, P Cambieri, G Campanini, C. Cavanna, G Comolli, M Corbella, R Daturi, M Furione, P Marone, E Monzillo, S Paolucci, M Parea, E Percivalle, A Piralla, F Rovida, A Sarasini, M Zavattoni, G Adzasehoun, M Ardizzone, L Bellotti, V Brunco, E Cabano, G Casali, L Capella, D Devitis, L Dossena, G Frisco, G Garbagnoli, F Gardellini, A Girello, A Guerrizio, V Landini, C Lucchelli, V Maliardi, P Piemontese, S Pezzaia, M Premoli, C Rebuffa, C Zanello, J Bagnarino, F Bergami, A Bonetti, G Caneva, I Cassaniti, A Corcione, R Di Martino, A Di Napoli, A Ferrari, G Ferrari, L Fiorina, A Gallone, F Giardina, A Girardi, A Mercato, C Merla, F Novazzi, G Ratano, B Rossi, G Saveriaempillai, IM Sciabica, M Tallarita, E Vecchio Nepita, J Vitali, A Cerino, S Varchetta, B Oliviero, S Mantovani, D Mele, M Calvi, M Tizzoni, C Nicora, A Triarico, V Petronella, C Marena, A Muzzi, P Lago, S Cutti, V Novelli, F Comandatore, G BatistiBiffignandi, S Gaiarsa, M Rettani, and C Bandi
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COVID-19 ,EBV DNA ,Lymphocyte subpopulation ,Infectious and parasitic diseases ,RC109-216 - Abstract
Objectives: The immunologic profile and opportunistic viral DNA increase were monitored in Italian patients with COVID-19 in order to identify markers of disease severity. Methods: A total of 104 patients infected with SARS-CoV-2 were evaluated in the study. Of them, 42/104 (40.4%) were hospitalized in an intensive care unit (ICU) and 62/104(59.6%) in a sub-intensive care unit (SICU). Human cytomegalovirus (HCMV) and Epstein-Barr virus (EBV), Parvovirus B19 and Human Herpesvirus 6 virus reactivations were determined by real-time PCR, and lymphocyte subpopulation counts were determined by flow cytometry. Results: Among opportunistic viruses, only EBV was consistently detected. EBV DNA was observed in 40/42 (95.2%) of the ICU patients and in 51/61 (83.6%) of the SICU patients. Comparing the two groups of patients, the EBV DNA median level among ICU patients was significantly higher than that observed in SICU patients. In parallel, a significant reduction of CD8 T cell and NK count in ICU patients as compared with SICU patients was observed (p
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- 2021
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32. AFLOW-XtalFinder: a reliable choice to identify crystalline prototype
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David Hicks, Cormac Toher, Denise C. Ford, Frisco Rose, Carlo De Santo, Ohad Levy, Michael J. Mehl, and Stefano Curtarolo
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Materials of engineering and construction. Mechanics of materials ,TA401-492 ,Computer software ,QA76.75-76.765 - Abstract
Abstract The accelerated growth rate of repository entries in crystallographic databases makes it arduous to identify and classify their prototype structures. The open-source AFLOW-XtalFinder package was developed to solve this problem. It symbolically maps structures into standard designations following the AFLOW Prototype Encyclopedia and calculates the internal degrees of freedom consistent with the International Tables for Crystallography. To ensure uniqueness, structures are analyzed and compared via symmetry, local atomic geometries, and crystal mapping techniques, simultaneously grouping them by similarity. The software (i) distinguishes distinct crystal prototypes and atom decorations, (ii) determines equivalent spin configurations, (iii) reveals compounds with similar properties, and (iv) guides the discovery of unexplored materials. The operations are accessible through a Python module ready for workflows, and through command line syntax. All the 4+ million compounds in the AFLOW.org repositories are mapped to their ideal prototype, allowing users to search database entries via symbolic structure-type. Furthermore, 15,000 unique structures — sorted by prevalence — are extracted from the AFLOW-ICSD catalog to serve as future prototypes in the Encyclopedia.
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- 2021
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33. Clival mucocele: An unusual finding 17 years after endoscopic sinus surgery
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Nicholas A. Frisco, Jacob G. Eide, James N. Palmer, and Rijul S. Kshirsagar
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Mucocele ,Clivus ,Rhinology ,Skull base ,Case report ,Endoscopic surgery ,Otorhinolaryngology ,RF1-547 - Abstract
Introduction: To describe a case of an isolated clival mucocele presenting asymptomatically after previous endoscopic sinus surgery and review the existing literature on the clinical characteristics associated with these lesions. Methods: Case report and literature review. Results: We present a case of a clival mucocele that was found incidentally in a 66-year-old female undergoing hearing loss evaluation and had previously undergone endoscopic sphenoidotomy 17 years prior. The lesion was drained via an expanded endonasal endoscopic approach without complication and pathology confirmed the diagnosis of mucocele. Conclusion: This case demonstrates the efficacy of a surgical approach to cystic lesions of the clivus and highlights the importance of regular follow-up after endoscopic sinus surgery to detect these potentially subtle lesions and prevent their symptomatic progression.
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- 2022
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34. A RESTful API for exchanging Materials Data in the AFLOWLIB.org consortium
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Taylor, Richard H., Rose, Frisco, Toher, Cormac, Levy, Ohad, Nardelli, Marco Buongiorno, and Curtarolo, Stefano
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Condensed Matter - Materials Science ,Computer Science - Digital Libraries - Abstract
The continued advancement of science depends on shared and reproducible data. In the field of computational materials science and rational materials design this entails the construction of large open databases of materials properties. To this end, an Application Program Interface (API) following REST principles is introduced for the AFLOWLIB.org materials data repositories consortium. AUIDs (Aflowlib Unique IDentifier) and AURLs (Aflowlib Uniform Resource locator) are assigned to the database resources according to a well-defined protocol described herein, which enables the client to access, through appropriate queries, the desired data for post-processing. This introduces a new level of openness into the AFLOWLIB repository, allowing the community to construct high-level work-flows and tools exploiting its rich data set of calculated structural, thermodynamic, and electronic properties. Furthermore, federating these tools would open the door to collaborative investigation of the data by an unprecedented extended community of users to accelerate the advancement of computational materials design and development., Comment: 22 pages, 7 figures
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- 2014
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35. Signs of the End of the Paradox? Cohort Shifts in Smoking and Obesity and the Hispanic Life Expectancy Advantage
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Jennifer Van Hook, Michelle L. Frisco, and Carlyn E. Graham
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hispanic paradox ,life expectancy ,mortality ,obesity ,smoking ,cohort trends ,Sociology (General) ,HM401-1281 - Abstract
Hispanics' paradoxical life expectancy advantage over whites has largely been attributed to Hispanics' lower smoking prevalence. Yet across birth cohorts, smoking prevalence has declined for whites and Hispanics, and Hispanics' obesity prevalence has increased substantially. Our analysis uses data from the 1989 to 2014 National Health Interview Survey and Linked Mortality files to investigate whether these trends could lead Hispanics to lose their comparative mortality advantage. Simulations suggest that foreign-born Hispanics' life expectancy advantage over whites is likely to persist because cohort trends in smoking and obesity largely offset each other. However, U.S.-born Hispanics' life expectancy advantage over whites is likely to diminish or disappear entirely as the 1970s and 1980s birth cohorts age due to increases in obesity prevalence and the relatively high mortality risks of those who are obese. Results have important implications for understanding the future of immigrants' health advantages and ethnic disparities in health.
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- 2020
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36. Predation of potential insect pests in oil palm plantations, rubber tree plantations, and fruit orchards
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Nuradilah Denan, Wan Mamat Wan Zaki, Ahmad R. Norhisham, Ruzana Sanusi, Dzulhelmi Muhammad Nasir, Frisco Nobilly, Adham Ashton‐Butt, Alex M. Lechner, and Badrul Azhar
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artificial caterpillar ,biodiversity ,ecosystem services ,monoculture ,polyculture ,Ecology ,QH540-549.5 - Abstract
Abstract In human‐modified landscapes, important ecological functions such as predation are negatively affected by anthropogenic activities, including the use of pesticides and habitat degradation. Predation of insect pests is an indicator of healthy ecosystem functioning, which provides important ecosystem services, especially for agricultural systems. In this study, we compare predation attempts from arthropods, mammals, and birds on artificial caterpillars in the understory, between three tropical agricultural land‐use types: oil palm plantations, rubber tree plantations, and fruit orchards. We collected a range of local and landscape‐scale data including undergrowth vegetation structure; elevation; proximity to forest; and canopy cover in order to understand how environmental variables can affect predation. In all three land‐use types, our results showed that arthropods and mammals were important predators of artificial caterpillars and there was little predation by birds. We did not find any effect of the environmental variables on predation. There was an interactive effect between land‐use type and predator type. Predation by mammals was considerably higher in fruit orchards and rubber tree than in oil palm plantations, likely due to their ability to support higher abundances of insectivorous mammals. In order to maintain or enhance natural pest control in these common tropical agricultural land‐use types, management practices that benefit insectivorous animals should be introduced, such as the reduction of pesticides, improvement of understory vegetation, and local and landscape heterogeneity.
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- 2020
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37. Identification of optimal dosing schedules of dacomitinib and osimertinib for a phase I/II trial in advanced EGFR-mutant non-small cell lung cancer
- Author
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Poels, Kamrine E., Schoenfeld, Adam J., Makhnin, Alex, Tobi, Yosef, Wang, Yuli, Frisco-Cabanos, Heidie, Chakrabarti, Shaon, Shi, Manli, Napoli, Chelsi, McDonald, Thomas O., Tan, Weiwei, Hata, Aaron, Weinrich, Scott L., Yu, Helena A., and Michor, Franziska
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- 2021
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38. AFLOW-XtalFinder: a reliable choice to identify crystalline prototypes
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Hicks, David, Toher, Cormac, Ford, Denise C., Rose, Frisco, Santo, Carlo De, Levy, Ohad, Mehl, Michael J., and Curtarolo, Stefano
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- 2021
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39. Novel Computerized Method for Automated Determination of Ventilatory Threshold and Respiratory Compensation Point
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Kyoung Jae Kim, Eric Rivas, Brian Prejean, Dillon Frisco, Millennia Young, and Meghan Downs
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incremental exercise ,noninvasive measurement ,ventilatory threshold ,respiratory compensation point ,automated determination ,Physiology ,QP1-981 - Abstract
Introduction: The ventilatory threshold (named as VT1) and the respiratory compensation point (named as VT2) describe prominent changes of metabolic demand and exercise intensity domains during an incremental exercise test.Methods: A novel computerized method based on the optimization method was developed for automatically determining VT1 and VT2 from expired air during a progressive maximal exercise test. A total of 109 peak cycle tests were performed by members of the US astronaut corps (74 males and 35 females). We compared the automatically determined VT1 and VT2 values against the visual subjective and independent analyses of three trained evaluators. We also characterized VT1 and VT2 and the respective absolute and relative work rates and distinguished differences between sexes.Results: The automated compared to the visual subjective values were analyzed for differences with t test, for agreement with Bland–Altman plots, and for equivalence with a two one-sided test approach. The results showed that the automated and visual subjective methods were statistically equivalent, and the proposed approach reliably determined VT1 and VT2 values. Females had lower absolute O2 uptake, work rate, and ventilation, and relative O2 uptake at VT1 and VT2 compared to men (p ≤ 0.04). VT1 and VT2 occurred at a greater relative percentage of their peak VO2 for females (67 and 88%) compared to males (55 and 74%; main effect for sex: p
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- 2021
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40. Analysis of Weed Communities in Solar Farms Located in Tropical Areas—The Case of Malaysia
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Mohammad Effendy Ya’acob, Li Lu, Frisco Nobilly, Nik Norasma Che’Ya, Ammar Abdul Aziz, Christian Dupraz, Muhammad Syafiq Yahya, Sharifah Nur Atikah, and Mohammad Abdullah Al. Mamun
- Subjects
weed identification ,Agrivoltaic4LSS ,tropical climate ,large-scale solar ,sustainable cities ,Agriculture - Abstract
Weed management in large-scale solar photovoltaic (LSS-PV) farms has become a great concern to the solar industry due to scarcity of labour and the ever-increasing price of pesticides, which opens up possibilities for integrated farming, also known as agrivoltaics. Improper weed control may have multiple negative impacts such as permanent shading of the module surface, pest housing which damages communication cables, and even bush fires. The shaded PV modules can be heated up to extreme temperatures, causing costly burn-out damage. Critical information on the types of weeds on solar farms, especially in Malaysia, has not been established to support the concept of weed management. Thus, with this study, detailed composition of the weed community was obtained via quadrat sampling between solar PV modules, near ground equipment, near perimeter fencing, and directly underneath the PV modules. Weed-control measures via high-quality weedmat installation under solar PV arrays have been implemented where this approach can be considered effective on solar farms based on the existing PV structure height and equipment constraints plus the increasing cost for labour and agricultural inputs. This work underlines the proposed Agrivoltaic for Large Scale Solar (Agrivoltaic4LSS) program to complement the solar industry in Malaysia towards an agrivoltaic, eco-friendly approach to weed management.
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- 2022
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41. Time to Revisit Oil Palm-Livestock Integration in the Wake of United Nations Sustainable Development Goals (SDGs)
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Badrul Azhar, Kamil Azmi Tohiran, Frisco Nobilly, Raja Zulkifli, Muhammad Izzuddin Syakir, Zulkifli Ishak, Norhisham Razi, Aqilah Oon, Ahmad Shahdan, and Thomas M. R. Maxwell
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biodiversity ,carbon sequestration ,palm oil certification ,targeted grazing ,food security ,weed ,Nutrition. Foods and food supply ,TX341-641 ,Food processing and manufacture ,TP368-456 - Abstract
To date, the idea of using livestock animals as biological tools to manage weeds, sequester carbon, and boost food security in oil palm plantations has not been seriously considered by industry stakeholders of major producing countries (e.g., Indonesia, Malaysia, Thailand, Colombia, and Nigeria). We revisit the integration of oil palm cultivation with livestock farming as a silvopastoral agroforestry practice in the wake of Sustainable Development Goals (SDGs). Oil palm-livestock integration has the potential to promote sustainable palm oil production because it can provide multiple environmental and socio-economic benefits, including carbon sequestration, restoring top soil, improving ecosystem biodiversity, reducing pesticide and fertilizer inputs, and boosting national food security. In contrast to monocultural outputs of most conventional plantations, an oil palm silvopastoral system is an ideal way to address the global food insecurity challenge as it produces bioenergy, vegetable oil/fat and animal-based protein sources (e.g., red meat). In addition, the potential of contract targeted grazing could be considered as a new type of business and income diversification for rural people. Oil palm-livestock integration is a strategy by the palm oil industry to achieve multiple SDGs. Out of the 17 SDGs, oil palm-livestock integration is likely to deliver nine SDGs. Palm oil certification bodies should recognize oil palm-livestock integration as a biological control method in weed management practices. We recommend that oil palm-livestock integration should be promoted to revitalize sustainable palm oil production and strategic biodiversity conservation policy. Policy makers should encourage major players in the palm oil industry to practice oil palm-livestock integration.
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- 2021
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42. Quality of Life Impact of Hypoglossal Nerve Stimulation with Inspire® Device in Patients with Obstructive Sleep Apnea Intolerant to Continuous Positive Airway Pressure Therapy
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Peter Baptista, I. Madeleine Di Frisco, Elena Urrestarazu, Juan Alcalde, Manuel Alegre, Isabel Sanchez, Carlos O’Connor-Reina, and Guillermo Plaza
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quality of life ,obstructive sleep apnea ,hypoglossal nerve stimulation ,minimally invasive surgical technique ,EuroQol-5D-5L ,Science - Abstract
Patients with obstructive sleep apnea (OSA) that do not tolerate/accept continuous positive airway pressure (CPAP) are candidates for surgical alternatives. Hypoglossal nerve stimulation (HNS) through the implantation of the Inspire® device constitutes a minimally invasive operative option. The main objective of this study is to estimate, under real-world clinical practice conditions, the 3-month impact on the quality of life (IQoL) of the HNS in patients with moderate/severe OSA who do not tolerate or accept CPAP, compared to patients who did not receive HNS. As a baseline, the unadjusted EuroQol utility index was 0.764 (SD:0.190) in the intervention group (IGr) and 0.733 (SD:0.205) in the control group (CGr); three months later, the indexes were 0.935 (SD: 0.101) and 0.727 (SD:0.200), respectively. The positive impact on quality of life was estimated to be +0.177 (95% CI: 0.044–0.310; p = 0.010). All dimensions in the IGr improved compared to CGr, especially for usual activities (p < 0.001) and anxiety/depression (p > 0.001). At the end of the follow-up, there was no significant difference in the quality of life between the general Spanish population and the IGr (difference: 0.012; CI95%: −0.03 to −0.057; p = 0.0578) for the same age range; however, there was a difference concerning the CGr (difference: −0.196; CI95%: −0.257 to −0.135; p < 0.001). In conclusion, patients with moderate/severe OSA implanted with the Inspire® device showed a positive IQoL.
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- 2022
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43. Author Correction: Identification of optimal dosing schedules of dacomitinib and osimertinib for a phase I/II trial in advanced EGFR-mutant non-small cell lung cancer
- Author
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Kamrine E. Poels, Adam J. Schoenfeld, Alex Makhnin, Yosef Tobi, Yuli Wang, Heidie Frisco-Cabanos, Shaon Chakrabarti, Manli Shi, Chelsi Napoli, Thomas O. McDonald, Weiwei Tan, Aaron Hata, Scott L. Weinrich, Helena A. Yu, and Franziska Michor
- Subjects
Science - Published
- 2022
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44. A network model with structured nodes
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Frisco, P.
- Subjects
Computer Science - Social and Information Networks ,Computer Science - Computational Engineering, Finance, and Science ,Physics - Physics and Society ,Quantitative Biology - Molecular Networks - Abstract
We present a network model in which words over a specific alphabet, called {\it structures}, are associated to each node and undirected edges are added depending on some distance between different structures. It is shown that this model can generate, without the use of preferential attachment or any other heuristic, networks with topological features similar to biological networks: power law degree distribution, clustering coefficient independent from the network size, etc. Specific biological networks ({\it C. Elegans} neural network and {\it E. Coli} protein-protein interaction network) are replicated using this model., Comment: match MRSA gene network not present because MRSA gene network still unpublished
- Published
- 2010
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45. On Languages Accepted by P/T Systems Composed of joins
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Frisco, Pierluigi and Ibarra, Oscar H.
- Subjects
Computer Science - Formal Languages and Automata Theory - Abstract
Recently, some studies linked the computational power of abstract computing systems based on multiset rewriting to models of Petri nets and the computation power of these nets to their topology. In turn, the computational power of these abstract computing devices can be understood by just looking at their topology, that is, information flow. Here we continue this line of research introducing J languages and proving that they can be accepted by place/transition systems whose underlying net is composed only of joins. Moreover, we investigate how J languages relate to other families of formal languages. In particular, we show that every J language can be accepted by a log n space-bounded non-deterministic Turing machine with a one-way read-only input. We also show that every J language has a semilinear Parikh map and that J languages and context-free languages (CFLs) are incomparable.
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- 2009
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46. Studi kesesuaian dan strategi pengelolaan ekowisata Pantai Ungapan, Kabupaten Malang untuk pengembangan pariwisata berkelanjutan
- Author
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Nailul Insani, Fauzi Ramadhoan A’rachman, Putri Kusuma Sanjiwani, and Frisco Imamuddin
- Subjects
pantai ungapan, indeks kesesuaian wisata, strategi pengelolaan wisata ,Theory and practice of education ,LB5-3640 ,Social Sciences - Abstract
Salah satu bentuk pemanfaatan sumberdaya pesisir dan laut di Kabupaten Malang berupa pengembangan kawasan wisata pantai. Dalam hal ini bentuk wisata pantai yang dikembangkan adalah kegiatan rekreasi pantai. Tujuan dari penelitian ini adalah untuk menganalisis kesesuaian wisata rekreasi dan merumuskan strategi pengelolaan kawasan wisata pantai. Penelitian ini dilakukan di Pantai Ungapan di Desa Gajahrejo, Kecamatan Gedangan, Kabupaten Malang, Jawa Timur. Metode yang digunakan dalam penelitian ini adalah deskriptif denganteknik analisis kuantitatif dan kualitatif. Data yang digunakan dalam penelitian ini adalah data primer dan sekunder. Pengumpulan data primer dalam penelitian ini menggunakan rapid integrated survey sumber daya alam wilayah pesisir, observasi dan wawancara. Pengumpulan data sekunder bersumber dari studi pustaka dan dokumen dari instansi terkait. Teknik analisis yang digunakan yaitu perhitungan Indeks Kesesuaian Wisata (IKW) untuk rekreasi dan metode SOAR. Berdasarkan hasil perhitungan IKW, Pantai Ungapan termasuk kategori sesuai yang dapat dijadikan kawasan ekowisata pantai dengan nilai 93%. Strategi yang dapat diterapkan di Pantai Ungapan yaitu mengoptimalkan seluruh potensi yang ada dan kerjasama seluruh stakeholders pariwisata untuk mewujudkan pengelolaan pariwisata berkelanjutan. Pembangunan keberlanjutan merupakan upaya terpadu dan terorganisasi untuk mengembangkan kualitas hidup dengan cara mengatur penyediaan, pengembangan, pemanfaatan, dan pemeliharaan sumber daya secara berkelanjutan. DOI: 10.17977/um022v4i12019p049
- Published
- 2019
47. Republication of 'A Propensity Score Matching Analysis of the Effects of Special Education Services'
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Morgan, Paul L., Frisco, Michelle L., Farkas, George, and Hibel, Jacob
- Abstract
Since the landmark enactment of Education of the Handicapped Act in 1975, special education supports and services have been provided to children with disabilities. Although costly, the intentionality of these specialized services has been to advance the educational and societal opportunities of children with disabilities as they progress to adulthood. For our republished article in this issue of "JSE's" 50th anniversary volume, we have selected an article by Paul Morgan, Michelle Frisco, George Farkas, and Jacob Hibel. In this research, Morgan and his colleagues quantified the effectiveness of special education services on children's learning and behavioral outcomes using large-scale longitudinal data. Their results challenge all education professionals to explore ways to increase the effectiveness of special education and to document research efforts that provide clear evidence that the services and supports provided to individuals with disabilities are improving the extent to which they fully experience the benefits of education and participate fully in society.
- Published
- 2017
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48. Validation of the GSP®/DELFIA® Anti-SARS-CoV-2 IgG Kit Using Dried Blood Samples for High-Throughput Serosurveillance and Standardized Quantitative Measurement of Anti-Spike S1 IgG Antibody Responses Post-Vaccination
- Author
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Ilaria Cicalini, Piero Del Boccio, Mirco Zucchelli, Claudia Rossi, Luca Natale, Gianmaria Demattia, Domenico De Bellis, Verena Damiani, Maria Lucia Tommolini, Erika Pizzinato, Alberto Frisco, Sara Verrocchio, Ines Bucci, Liborio Stuppia, Vincenzo De Laurenzi, and Damiana Pieragostino
- Subjects
anti-SARS-CoV-2 antibody test ,anti-SARS-CoV-2 vaccines ,serological quantitative test ,DBS ,Medicine - Abstract
Severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) has caused a major global public health crisis. In response, researchers and pharmaceutical companies worked together for the rapid development of vaccines to reduce the morbidity and mortality associated with viral infection. Monitoring host immunity following virus infection and/or vaccination is essential to guide vaccination intervention policy. Humoral immune response to vaccination can be assessed with serologic testing, and indeed, many serological immunoassays are now in use. However, these many different assays make the standardization of test results difficult. Moreover, most published serological tests require venous blood sampling, which makes testing large numbers of people complex and costly. Here, we validate the GSP®/DELFIA® Anti-SARS-CoV-2 IgG kit using dried blood samples for high-throughput serosurveillance using standard quantitative measurements of anti-spike S1 IgG antibody concentrations. We then apply our validated assay to compare post-vaccination anti-SARS-CoV-2 S1 IgG levels from subjects who received a double dose of the AZD1222 vaccine with those vaccinated with a heterologous strategy, demonstrating how this assay is suitable for large-scale screening to achieve a clearer population immune picture.
- Published
- 2022
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- View/download PDF
49. Targeting FGFR overcomes EMT-mediated resistance in EGFR mutant non-small cell lung cancer
- Author
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Raoof, Sana, Mulford, Iain J., Frisco-Cabanos, Heidie, Nangia, Varuna, Timonina, Daria, Labrot, Emma, Hafeez, Nafeeza, Bilton, Samantha J., Drier, Yotam, Ji, Fei, Greenberg, Max, Williams, August, Kattermann, Krystina, Damon, Leah, Sovath, Sosathya, Rakiec, Daniel P., Korn, Joshua M., Ruddy, David A., Benes, Cyril H., Hammerman, Peter S., Piotrowska, Zofia, Sequist, Lecia V., Niederst, Matthew J., Barretina, Jordi, Engelman, Jeffrey A., and Hata, Aaron N.
- Published
- 2019
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50. Can treatment of Brachiaria decumbens (signal grass) improve its utilisation in the diet in small ruminants?—a review
- Author
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Chung, Eric Lim Teik, Predith, Michael, Nobilly, Frisco, Samsudin, Anjas Asmara, Jesse, Faez Firdaus Abdullah, and Loh, Teck Chwen
- Published
- 2018
- Full Text
- View/download PDF
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