26 results on '"Frederico M. Farin"'
Search Results
2. Exercise training in transgenic mice is associated with attenuation of early breast cancer growth in a dose-dependent manner.
- Author
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Jorming Goh, Jesse Tsai, Theo K Bammler, Frederico M Farin, Emma Endicott, and Warren C Ladiges
- Subjects
Medicine ,Science - Abstract
Epidemiological research suggests that regular physical activity confers beneficial effects that mediate an anti-tumor response and may reduce cancer recurrence. It is unclear what amount of physical activity is necessary to exert such a protective effect and what mechanisms are involved. We investigated the effects of voluntary wheel running on tumor progression and cytokine gene expression in the transgenic polyoma middle T oncoprotein (PyMT) mouse model of invasive breast cancer. Runners showed significantly reduced tumor sizes compared with non-runners after 3 weeks of running (p ≤ 0.01), and the greater the running distance the smaller the tumor size (Pearson's r = -0.61, p ≤ 0.04, R(2) = 0.38). Mice running greater than 150 km per week had a significantly attenuated tumor size compared with non-runners (p ≤ 0.05). Adipose tissue mass was inversely correlated with tumor size in runners (Pearson's r = -0.77, p = 0.014) but not non-runners. Gene expression of CCL22, a cytokine associated with recruitment of immunosuppressive T regulatory cells, was decreased in tumors of runners compared to non-runners (p ≤ 0.005). No differences in tumor burden or metastatic burden were observed between runners and non-runners after ten weeks of running when the study was completed. We conclude that voluntary wheel running in PyMT mice correlates with an attenuation in tumor progression early during the course of invasive breast cancer. This effect is absent in the later stages of overwhelming tumor burden even though cytokine signaling for immunosuppressive regulatory T cells was down regulated. These observations suggest that the initiation of moderate exercise training for adjunctive therapeutic benefit early in the course of invasive breast cancer should be considered for further investigation.
- Published
- 2013
- Full Text
- View/download PDF
3. A novel antibody-based biomarker for chronic algal toxin exposure and sub-acute neurotoxicity.
- Author
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Kathi A Lefebvre, Elizabeth R Frame, Frances Gulland, John D Hansen, Preston S Kendrick, Richard P Beyer, Theo K Bammler, Frederico M Farin, Emma M Hiolski, Donald R Smith, and David J Marcinek
- Subjects
Medicine ,Science - Abstract
The neurotoxic amino acid, domoic acid (DA), is naturally produced by marine phytoplankton and presents a significant threat to the health of marine mammals, seabirds and humans via transfer of the toxin through the foodweb. In humans, acute exposure causes a neurotoxic illness known as amnesic shellfish poisoning characterized by seizures, memory loss, coma and death. Regular monitoring for high DA levels in edible shellfish tissues has been effective in protecting human consumers from acute DA exposure. However, chronic low-level DA exposure remains a concern, particularly in coastal and tribal communities that subsistence harvest shellfish known to contain low levels of the toxin. Domoic acid exposure via consumption of planktivorous fish also has a profound health impact on California sea lions (Zalophus californianus) affecting hundreds of animals yearly. Due to increasing algal toxin exposure threats globally, there is a critical need for reliable diagnostic tests for assessing chronic DA exposure in humans and wildlife. Here we report the discovery of a novel DA-specific antibody response that is a signature of chronic low-level exposure identified initially in a zebrafish exposure model and confirmed in naturally exposed wild sea lions. Additionally, we found that chronic exposure in zebrafish caused increased neurologic sensitivity to DA, revealing that repetitive exposure to DA well below the threshold for acute behavioral toxicity has underlying neurotoxic consequences. The discovery that chronic exposure to low levels of a small, water-soluble single amino acid triggers a detectable antibody response is surprising and has profound implications for the development of diagnostic tests for exposure to other pervasive environmental toxins.
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- 2012
- Full Text
- View/download PDF
4. Differential expression of extracellular matrix-mediated pathways in single-suture craniosynostosis.
- Author
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Brendan D Stamper, Sarah S Park, Richard P Beyer, Theo K Bammler, Frederico M Farin, Brig Mecham, and Michael L Cunningham
- Subjects
Medicine ,Science - Abstract
Craniosynostosis is a disease defined by premature fusion of one or more cranial sutures. The mechanistic pathology of single-suture craniosynostosis is complex and while a number of genetic biomarkers and environmental predispositions have been identified, in many cases the causes remain controversial and inconclusive. In this study, gene expression data from 199 patients with isolated sagittal (n = 100), unilateral coronal (n = 50), and metopic (n = 49) synostosis are compared against both a control population (n = 50), as well as each other. After controlling for variables contributing to potential bias, FGF7, SFRP4, and VCAM1 emerged as genes associated with single-suture craniosynostosis due to their significantly large changes in gene expression compared to the control population. Pathway analysis implicated focal adhesion and extracellular matrix (ECM)-receptor interaction as differentially regulated gene networks when comparing all cases of single-suture synostosis and controls. Lastly, overall gene expression was found to be highly conserved between coronal and metopic cases, as evidenced by the fact that WNT2 and IGFBP2 were the only genes differentially regulated to a significantly large extent in a direct comparison. The identification of genes and gene networks associated with Fgf/Igf/Wnt signaling and ECM-mediated focal adhesion not only support the involvement of biomarkers previously reported to be related to craniosynostosis, but also introduce novel transcripts and pathways that may play critical roles in its pathogenesis.
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- 2011
- Full Text
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5. p53 Contributes to Differentiating Gene Expression Following Exposure to Acetaminophen and Its Less Hepatotoxic Regioisomer Both In Vitro and In Vivo
- Author
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Brendan D. Stamper, Michael L. Garcia, Duy Q. Nguyen, Richard P. Beyer, Theo K. Bammler, Frederico M. Farin, Terrance J. Kavanagh, and Sidney D. Nelson
- Subjects
lcsh:Biology (General) ,lcsh:QH301-705.5 - Published
- 2015
6. Transcriptome correlation analysis identifies two unique craniosynostosis subtypes associated with IRS1 activation
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Brig Mecham, Richard P. Beyer, Theodor K. Bammler, Hui Wen Wilkerson, Michael L. Cunningham, Brendan D. Stamper, Frederico M. Farin, L. M. Mangravite, and Sarah S. Park
- Subjects
Transcriptional Activation ,Physiology ,Biology ,medicine.disease_cause ,p38 Mitogen-Activated Protein Kinases ,Cell Line ,Receptor, IGF Type 1 ,Transcriptome ,Craniosynostoses ,Glycogen Synthase Kinase 3 ,Genetics ,medicine ,Cluster Analysis ,Humans ,Phosphorylation ,Child ,Receptor ,Protein kinase B ,Cells, Cultured ,Research Articles ,Oligonucleotide Array Sequence Analysis ,Insulin-like growth factor 1 receptor ,Ribosomal Protein S6 ,Mutation ,Glycogen Synthase Kinase 3 beta ,Osteoblasts ,JNK Mitogen-Activated Protein Kinases ,Infant ,Ribosomal Protein S6 Kinases, 70-kDa ,Phenotype ,Child, Preschool ,Insulin Receptor Substrate Proteins ,Cancer research ,Signal transduction ,Proto-Oncogene Proteins c-akt ,Signal Transduction - Abstract
The discovery of causal mechanisms associated with nonsyndromic craniosynostosis has proven to be a difficult task due to the complex nature of the disease. In this study, differential transcriptome correlation analysis was used to identify two molecularly distinct subtypes of nonsyndromic craniosynostosis, termed subtype A and subtype B. In addition to unique correlation structure, subtype A was also associated with high IGF pathway expression, whereas subtype B was associated with high integrin expression. To identify a pathologic link between altered gene correlation/expression and the disease state, phosphorylation assays were performed on primary osteoblast cell lines derived from cases within subtype A or subtype B, as well as on primary osteoblast cell lines with novel IGF1R variants previously reported by our lab (Cunningham ML, Horst JA, Rieder MJ, Hing AV, Stanaway IB, Park SS, Samudrala R, Speltz ML. Am J Med Genet A 155A: 91–97, 2011). Elevated IRS1 (pan-tyr) and GSK3β (ser-9) phosphorylation were observed in two novel IGF1R variants with receptor L domain mutations. In subtype A, a hypomineralization phenotype coupled with decreased phosphorylation of IRS1 (ser-312), p38 (thr-180/tyr-182), and p70S6K (thr-412) was observed. In subtype B, decreased phosphorylation of IRS1 (ser-312) as well as increased phosphorylation of Akt (ser-473), GSK3β (ser-9), IGF1R (tyr-1135/tyr-1136), JNK (thr-183/tyr-187), p70S6K (thr-412), and pRPS6 (ser-235/ser-236) was observed, thus implicating the activation of IRS1-mediated Akt signaling in potentiating craniosynostosis in this subtype. Taken together, these results suggest that despite the stimulation of different pathways, activating phosphorylation patterns for IRS1 were consistent in cell lines from both subtypes and the IGF1R variants, thus implicating a key role for IRS1 in the pathogenesis of nonsyndromic craniosynostosis.
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- 2012
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- View/download PDF
7. Transcriptional Biomarkers and Mechanisms of Copper-Induced Olfactory Injury in Zebrafish
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Susan C. Tilton, Theo K. Bammler, Richard P. Beyer, Patricia L. Stapleton, Frederico M. Farin, Evan P. Gallagher, and Fred Tilton
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Olfactory system ,Transcription, Genetic ,Calbindin ,Article ,Olfaction Disorders ,Sequence Homology, Nucleic Acid ,Gene expression ,Animals ,Cluster Analysis ,Environmental Chemistry ,RNA, Messenger ,Zebrafish ,Oligonucleotide Array Sequence Analysis ,Regulation of gene expression ,biology ,Reverse Transcriptase Polymerase Chain Reaction ,Reproducibility of Results ,General Chemistry ,biology.organism_classification ,Molecular biology ,Cell biology ,Gene Expression Regulation ,biology.protein ,Signal transduction ,Olfactory marker protein ,Biomarkers ,Copper ,Parvalbumin ,Signal Transduction - Abstract
Metals such as copper disrupt olfactory function in fish. Unfortunately, little is understood of the molecular consequences of copper olfactory impairment, thus hindering the development of relevant diagnostic tools of olfactory injury. To address this critical data gap, we analyzed gene expression within olfactory tissues of adult zebrafish exposed to CuCl2 (6, 16, 40 ppb) for 24 hrs. Transcriptional markers of copper impairment within the entire olfactory system were identified and specific genes of interest (e.g. S100a, parvalbumin 8, olfactory marker protein, and calbindin 2-like protein) were confirmed with quantitative real-time PCR. In addition, we performed gene set analysis (GSA) using both a-priori and custom pathways of gene sets specifically targeting the olfactory signal transduction (OST) pathway. These analyses revealed down-regulated gene sets related to calcium channels and ion transport, g-proteins, and olfactory receptors. Collectively, these data demonstrate that copper causes a depression of transcription of key genes within the OST pathway and elsewhere within olfactory tissues, likely resulting in an olfactory system less responsive to odorants. Further, these data provide a mechanistic explanation in support of earlier studies of functional olfactory impairment in fish following copper exposure.
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- 2008
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8. Association of estrogen-related polymorphisms with age at menarche, age at final menstrual period, and stages of the menopausal transition
- Author
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Frederico M. Farin, Patricia L. Stapleton, Kathleen Smith-DiJulio, Nancy Fugate Woods, Jesse Tsai, Eunice Yun Tao, and Ellen S. Mitchell
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Adult ,medicine.drug_class ,Physiology ,Statistics, Nonparametric ,Aromatase ,Cytochrome P-450 Enzyme System ,Polymorphism (computer science) ,Genotype ,Cytochrome P-450 CYP1A1 ,Humans ,Medicine ,Longitudinal Studies ,Genetic variability ,Allele ,Alleles ,Menstrual Cycle ,Menarche ,Genetics ,Polymorphism, Genetic ,business.industry ,Age Factors ,Wild type ,Steroid 17-alpha-Hydroxylase ,Obstetrics and Gynecology ,Middle Aged ,Receptors, Estrogen ,Estrogen ,Cytochrome P-450 CYP1B1 ,Female ,Aryl Hydrocarbon Hydroxylases ,Analysis of variance ,Menopause ,business - Abstract
Objective: To explore the association of estrogen-related polymorphisms with age at menarche, age at onset and duration of stages of the menopausal transition, and age at final menstrual period (FMP). Design: A total of 152 white women were genotyped for CYP17, CYP19 3-untranslated region, CYP19 TTTA 7-13 , HSDB1, CYP1A1, CYP1B1, and ESR1 polymorphisms. Analysis of variance was used to test a nonspecific model for differences among genotypes associated with each polymorphism. Results: Five of the 84 associations tested were significant at P < 0.05, which could be expected by chance. Women with two CYP19 7r alleles had menarche earlier (11.5 y) than those with one 7r allele (13.1 y). Women with two 11r alleles were 2 years older at onset of late stage than those with one 11r allele (50.7 y vs 48.6 y). Those with two 7r(-3) alleles were 2 years older at FMP than those without this allele (53.9 y vs 51.3 y). Women with the homozygous wild-type allele for HSDB1 (rs2830) were younger at FMP by 2 years than those with the heterozygous allele (50.8 y vs 52.9 y). Women with the heterozygous allele for CYP1B1*2 had a later age at menarche compared with women with the homozygous wild type (13 y vs 12.5 y). Conclusions: Age at onset of late stage and FMP and age at menarche are associated with specific genetic polymorphisms in the estrogen biosynthesis and metabolism genes. However, because of the number of comparisons, these associations may be false positives. These findings should be confirmed with a larger sample of white women.
- Published
- 2008
- Full Text
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9. haplotype structure in European American warfarin patients and association with clinical outcomes
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Allan E. Rettie, Sengkeo Srinouanprachan, Frederico M. Farin, Mark J. Rieder, David L. Veenstra, Mitchell K. Higashi, and David K. Blough
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Pharmacology ,Genetics ,education.field_of_study ,Haplotype ,Population ,Single-nucleotide polymorphism ,Biology ,Minor allele frequency ,Genetic variation ,Coding region ,Pharmacology (medical) ,Allele ,education ,CYP2C9 - Abstract
Objective The goal of this study was to define the haplotype structure of the cytochrome P450 (CYP) 2C9 gene in a European American population and evaluate associations between CYP2C9 haplotypes and anticoagulation-related outcomes. Methods Genomic deoxyribonucleic acid from 192 European American patients stabilized on warfarin therapy was resequenced across 60 kilobases of the CYP2C9 genomic region, including all exons, dense sampling of introns, approximately 10 kilobases of the 5′-flanking region, and approximately 1.7 kilobases of the 3′-untranslated region. Results A total of 132 single nucleotide polymorphisms (SNPs) were detected, of which 47 were present in the 5′-flanking promoter region, 11 in the exonic coding region, and 74 in the intron regions. Nine nonsynonymous SNPs in the coding region consisted of CYP2C9*2, *3, *9, *11, and *12; R125H; and 3 new structural variants. Sixty SNPs were present at a minor allele frequency of greater than 5%, and from this subpopulation, 23 haplotypes were inferred. Clustering analysis identified 6 major groups of related haplotypes that were further designated 1A, 1B, 1C, 1D, 2, or 3. The *2 and *3 SNPs appeared exclusively in groups 2 and 3, and these groups combined were associated with significantly reduced warfarin maintenance doses, longer time to stable dosing, and increased risk of bleeding. In contrast, combinations of haplotypes 1A, 1B, 1C, and 1D were not associated with differences in any of these outcomes. Conclusion These data establish a whole-gene, high-resolution haplotype structure for CYP2C9 in a European American patient population and suggest that genetic variation in exons, rather than the promoter or other regulatory regions, is largely responsible for warfarin sensitivity associated with CYP2C9 variants in this population. Clinical Pharmacology & Therapeutics (2005) 77, 353–364; doi: 10.1016/j.clpt.2005.01.019
- Published
- 2005
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10. [Untitled]
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Amy Trentham-Dietz, David J. Hunter, Frederico M. Farin, Polly A. Newcomb, Laura Mignone, Kathleen M. Egan, and Linda Titus-Ernstoff
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Gynecology ,Cancer Research ,medicine.medical_specialty ,education.field_of_study ,business.industry ,Incidence (epidemiology) ,Population ,Case-control study ,Odds ratio ,medicine.disease ,Confidence interval ,Breast cancer ,Oncology ,Epidemiology ,Genotype ,medicine ,business ,education ,Demography - Abstract
Objective: To evaluate the potential interaction between N-acetyltransferase 2 (NAT2) and smoking in breast cancer incidence. Methods: The data are derived from a population-based case–control study of women aged 20–69 years who were residents of Massachusetts or Wisconsin during 1997–1998. Incident cases of invasive breast cancer were identified through state tumor registries and age-similar controls were selected at random from population lists. Telephone interviews were conducted to obtain information on known and suspected risk factors including smoking history. Women provided oral mucosal DNA through the mail for genetic studies. Results: A total of 791 cases and 797 controls were included in the analysis. Overall, smoking was modestly associated with breast cancer risk (multivariate odds ratio (OR) for ever smoking: 1.37; 95% confidence interval (CI): 1.12–1.69), and there was a trend in risk for greater pack-years of smoking among postmenopausal women (p for trend = 0.02). Overall, NAT2 was not related to invasive breast cancer (multivariate OR: 1.11; 95% CI: 0.90–1.36). Associations of smoking with breast cancer tended to be somewhat stronger among the women with the slow acetylator genotype for NAT2: when compared to those who never smoked and were rapid acetylators, the OR for ever smoking was 1.50 (95% CI: 1.11–2.02) in slow acetylators, and OR: 1.24 (95% CI: 0.91–1.70) in rapid acetylators. However, tests for multiplicative interaction were not significant in case–control comparisons, or in case-only analyses. Conclusion: Results of the study are compatible with the majority of previous studies that indicate little or no association of NAT2, smoking, or their interaction with the occurrence of breast cancer.
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- 2003
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11. p53 Contributes to Differentiating Gene Expression following Exposure to Acetaminophen and Its Less Hepatotoxic Regioisomer Both and
- Author
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Brendan D. Stamper, Michael L. Garcia, Duy Q. Nguyen, Richard P. Beyer, Theo K. Bammler, Frederico M. Farin, Terrance J. Kavanagh, and Sidney D. Nelson
- Subjects
lcsh:Biology (General) ,digestive, oral, and skin physiology ,lcsh:QH301-705.5 - Abstract
The goal of the present study was to compare hepatic toxicogenomic signatures across in vitro and in vivo mouse models following exposure to acetaminophen (APAP) or its relatively nontoxic regioisomer 3′-hydroxyacetanilide (AMAP). Two different Affymetrix microarray platforms and one Agilent Oligonucleotide microarray were utilized. APAP and AMAP treatments resulted in significant and large changes in gene expression that were quite disparate, and likely related to their different toxicologic profiles. Ten transcripts, all of which have been implicated in p53 signaling, were identified as differentially regulated at all time-points following APAP and AMAP treatments across multiple microarray platforms. Protein-level quantification of p53 activity aligned with results from the transcriptomic analysis, thus supporting the implicated mechanism of APAP-induced toxicity. Therefore, the results of this study provide good evidence that APAP-induced p53 phosphorylation and an altered p53-driven transcriptional response are fundamental steps in APAP-induced toxicity.
- Published
- 2015
12. Dose-dependent effects of morphine exposure on mRNA and microRNA (miR) expression in hippocampus of stressed neonatal mice
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Sandra E. Juul, Richard P. Beyer, Ronald J. McPherson, Theo K. Bammler, Ryan M. McAdams, and Frederico M. Farin
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medicine.medical_specialty ,Vasopressin ,lcsh:Medicine ,Hippocampal formation ,Biology ,Hippocampus ,Mice ,Stress, Physiological ,Internal medicine ,Intensive care ,microRNA ,Gene expression ,medicine ,Animals ,RNA, Messenger ,lcsh:Science ,Regulation of gene expression ,Multidisciplinary ,Dose-Response Relationship, Drug ,Morphine ,Gene Expression Profiling ,lcsh:R ,Molecular biology ,Analgesics, Opioid ,MicroRNAs ,Endocrinology ,Animals, Newborn ,Gene Expression Regulation ,Aquaporin 1 ,lcsh:Q ,Stress, Psychological ,medicine.drug ,Research Article - Abstract
Morphine is used to sedate critically ill infants to treat painful or stressful conditions associated with intensive care. Whether neonatal morphine exposure affects microRNA (miR) expression and thereby alters mRNA regulation is unknown. We tested the hypothesis that repeated morphine treatment in stress-exposed neonatal mice alters hippocampal mRNA and miR expression. C57BL/6 male mice were treated from postnatal day (P) 5 to P9 with morphine sulfate at 2 or 5 mg/kg ip twice daily and then exposed to stress consisting of hypoxia (100% N2 1 min and 100% O2 5 min) followed by 2h maternal separation. Control mice were untreated and dam-reared. mRNA and miR expression profiling was performed on hippocampal tissues at P9. Overall, 2 and 5 mg/kg morphine treatment altered expression of a total of 150 transcripts (>1.5 fold change, P
- Published
- 2014
13. A Novel Antibody-Based Biomarker for Chronic Algal Toxin Exposure and Sub-Acute Neurotoxicity
- Author
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David J. Marcinek, Frances M. D. Gulland, Donald R. Smith, Elizabeth R. Frame, J. D. Hansen, Theo K. Bammler, Frederico M. Farin, Preston S. Kendrick, Kathi A. Lefebvre, Emma M. Hiolski, and Richard P. Beyer
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Veterinary Toxicology ,Physiology ,lcsh:Medicine ,Marine and Aquatic Sciences ,medicine.disease_cause ,Toxicology ,0403 veterinary science ,chemistry.chemical_compound ,lcsh:Science ,Zebrafish ,0303 health sciences ,Multidisciplinary ,Kainic Acid ,Ecology ,Domoic acid ,04 agricultural and veterinary sciences ,Animal Models ,3. Good health ,Sea Lions ,Veterinary Diseases ,Toxicity ,Medicine ,Research Article ,Neurotoxicology ,040301 veterinary sciences ,Toxic Agents ,Marine Biology ,Biology ,Algal bloom ,03 medical and health sciences ,Model Organisms ,Amnesic shellfish poisoning ,medicine ,Animals ,Humans ,14. Life underwater ,Shellfish ,030304 developmental biology ,Toxin ,lcsh:R ,Neurotoxicity ,medicine.disease ,chemistry ,Antibody Formation ,Earth Sciences ,lcsh:Q ,Veterinary Science ,Marine Toxins ,Marine toxin ,Biomarkers - Abstract
The neurotoxic amino acid, domoic acid (DA), is naturally produced by marine phytoplankton and presents a significant threat to the health of marine mammals, seabirds and humans via transfer of the toxin through the foodweb. In humans, acute exposure causes a neurotoxic illness known as amnesic shellfish poisoning characterized by seizures, memory loss, coma and death. Regular monitoring for high DA levels in edible shellfish tissues has been effective in protecting human consumers from acute DA exposure. However, chronic low-level DA exposure remains a concern, particularly in coastal and tribal communities that subsistence harvest shellfish known to contain low levels of the toxin. Domoic acid exposure via consumption of planktivorous fish also has a profound health impact on California sea lions (Zalophus californianus) affecting hundreds of animals yearly. Due to increasing algal toxin exposure threats globally, there is a critical need for reliable diagnostic tests for assessing chronic DA exposure in humans and wildlife. Here we report the discovery of a novel DA-specific antibody response that is a signature of chronic low-level exposure identified initially in a zebrafish exposure model and confirmed in naturally exposed wild sea lions. Additionally, we found that chronic exposure in zebrafish caused increased neurologic sensitivity to DA, revealing that repetitive exposure to DA well below the threshold for acute behavioral toxicity has underlying neurotoxic consequences. The discovery that chronic exposure to low levels of a small, water-soluble single amino acid triggers a detectable antibody response is surprising and has profound implications for the development of diagnostic tests for exposure to other pervasive environmental toxins.
- Published
- 2012
14. Differential expression of extracellular matrix-mediated pathways in single-suture craniosynostosis
- Author
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Richard P. Beyer, Theo K. Bammler, Frederico M. Farin, Sarah S. Park, Brendan D. Stamper, Michael L. Cunningham, and Brig Mecham
- Subjects
Male ,Anatomy and Physiology ,Microarrays ,lcsh:Medicine ,Biology ,Bioinformatics ,Craniosynostosis ,Focal adhesion ,Extracellular matrix ,03 medical and health sciences ,Craniosynostoses ,0302 clinical medicine ,WNT2 ,Gene expression ,medicine ,Genetics ,Humans ,lcsh:Science ,Child ,Bone ,Musculoskeletal System ,030304 developmental biology ,0303 health sciences ,Focal Adhesions ,Multidisciplinary ,Osteoblasts ,lcsh:R ,Wnt signaling pathway ,Infant ,Computational Biology ,Cranial Sutures ,Synostosis ,medicine.disease ,Extracellular Matrix ,Case-Control Studies ,Child, Preschool ,Genetics of Disease ,Medicine ,lcsh:Q ,Female ,SFRP4 ,Transcriptome ,030217 neurology & neurosurgery ,Signal Transduction ,Research Article - Abstract
Craniosynostosis is a disease defined by premature fusion of one or more cranial sutures. The mechanistic pathology of single-suture craniosynostosis is complex and while a number of genetic biomarkers and environmental predispositions have been identified, in many cases the causes remain controversial and inconclusive. In this study, gene expression data from 199 patients with isolated sagittal (n = 100), unilateral coronal (n = 50), and metopic (n = 49) synostosis are compared against both a control population (n = 50), as well as each other. After controlling for variables contributing to potential bias, FGF7, SFRP4, and VCAM1 emerged as genes associated with single-suture craniosynostosis due to their significantly large changes in gene expression compared to the control population. Pathway analysis implicated focal adhesion and extracellular matrix (ECM)-receptor interaction as differentially regulated gene networks when comparing all cases of single-suture synostosis and controls. Lastly, overall gene expression was found to be highly conserved between coronal and metopic cases, as evidenced by the fact that WNT2 and IGFBP2 were the only genes differentially regulated to a significantly large extent in a direct comparison. The identification of genes and gene networks associated with Fgf/Igf/Wnt signaling and ECM-mediated focal adhesion not only support the involvement of biomarkers previously reported to be related to craniosynostosis, but also introduce novel transcripts and pathways that may play critical roles in its pathogenesis.
- Published
- 2011
15. Effects of paraoxonase-1 (PON1) status on pre- and postnatal exposures to chlorpyrifos oxon and diazoxon
- Author
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Theodor K. Bammler, W.-F. Li, Toby B. Cole, Richard P. Beyer, Sarah S. Park, Frederico M. Farin, Clement E. Furlong, and Lucio G. Costa
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medicine.medical_specialty ,biology ,business.industry ,Paraoxonase ,Toxicology ,PON1 ,Cellular and Molecular Neuroscience ,Endocrinology ,Developmental Neuroscience ,Internal medicine ,medicine ,biology.protein ,business ,Chlorpyrifos oxon - Published
- 2014
- Full Text
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16. Differential regulation of mitogen-activated protein kinase pathways by acetaminophen and its nonhepatotoxic regioisomer 3'-hydroxyacetanilide in TAMH cells
- Author
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Brendan D. Stamper, Frederico M. Farin, Richard P. Beyer, Theo K. Bammler, and Sidney D. Nelson
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MAPK/ERK pathway ,MAP Kinase Signaling System ,Mice, Transgenic ,Toxicology ,Mice ,Isomerism ,Molecular Toxicology ,Gene expression ,medicine ,Animals ,Phosphorylation ,Protein kinase A ,Cells, Cultured ,Acetaminophen ,biology ,Oncogene ,Kinase ,Gene Expression Profiling ,digestive, oral, and skin physiology ,Molecular biology ,Mitogen-activated protein kinase ,Gene Knockdown Techniques ,biology.protein ,Hepatocytes ,medicine.drug - Abstract
Acetaminophen (APAP), a widely used analgesic and antipyretic that is considered to be relatively safe at recommended doses, is the leading cause of drug-induced liver failure in the United States. 3′-Hydroxyacetanilide (AMAP), a regioisomer of APAP, is useful as a comparative tool for studying APAP-induced toxicity because it is nontoxic relative to APAP. Transforming growth factor-alpha transgenic mouse hepatocytes were treated with both isomers to investigate mitogen-activated protein kinase (MAPK) cascades in order to differentiate their toxicological outcomes. Posttranslational modifications of MAPK signaling were assessed using immunoblotting and Bioplex technology, whereas gene expression changes were measured using Affymetrix Mouse Gene 1.0 ST arrays. APAP treatment led to higher levels of glutathione depletion at 6 and 24 h compared with AMAP in mitochondria. Glutathione depletion was preceded by increased levels of c-Jun N-terminal kinase (JNK) phosphorylation at 2 and 6 h after APAP treatment compared with AMAP, whereas AMAP treatment led to increased extracellular signal–regulated protein kinase (ERK) phosphorylation at 2 and 6 h compared with APAP. Furthermore, APAP treatment significantly upregulated jun oncogene (c-Jun) gene expression, which was confirmed by Western blotting for both the phosphorylated and the nonphosphorylated forms of c-Jun protein. Transfection with JNK siRNA attenuated APAP toxicity after 24 h, suggesting that higher levels of APAP-induced activation of JNK were related to higher rates of cell death. In summary, genomic regulation of MAPK-related transcription factors coupled with posttranslational activation of their upstream kinases is critical in differentiating the toxicities of APAP and AMAP.
- Published
- 2010
17. CC2D2A is mutated in Joubert syndrome and interacts with the ciliopathy-associated basal body protein CEP290
- Author
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Stef J.F. Letteboer, Kelly N. Owens, John B. Vincent, Sylvia E. C. van Beersum, Yangfan Liu, Michael O. Dorschner, Dana M. Knutzen, Melissa L. Eckert, Abdulrahman Alswaid, Cecilia B. Moens, Nine V A M Knoers, Friedhelm Hildebrandt, Nicholas T. Gorden, Edgar A. Otto, Dorus A. Mans, P. Rosenthal, Nicholas Katsanis, Phillip F. Chance, Edwin W. Rubel, Ronald Roepman, Abigail Hikida, Heleen H. Arts, Elaine H. Zackai, David W. Raible, Ian A. Glass, Dan Doherty, Meral Topçu, Karlien L.M. Coene, Frederico M. Farin, Erica E. Davis, Carolyn M. Hutter, Melissa A. Parisi, Sel Dibooglu, Hamit Özyürek, Theo K. Bammler, Çocuk Sağlığı ve Hastalıkları, and OMÜ
- Subjects
Male ,Genetics and epigenetic pathways of disease [NCMLS 6] ,TMEM67 ,Membrane transport and intracellular motility [NCMLS 5] ,Cell Cycle Proteins ,Ciliopathies ,Cohort Studies ,Consanguinity ,Ocular Motility Disorders ,Cerebellum ,Genetics(clinical) ,Genetics (clinical) ,Renal disorder [IGMD 9] ,Genetics ,Genetics & Heredity ,Cilium ,Homozygote ,Chromosome Mapping ,Ciliary transition zone ,Exons ,Syndrome ,Kidney Diseases, Cystic ,Immunohistochemistry ,Recombinant Proteins ,Neoplasm Proteins ,Pedigree ,RPGRIP1L ,Muscle Hypotonia ,Chromosomes, Human, Pair 4 ,Genetic Markers ,Health aging / healthy living [IGMD 5] ,Biology ,Polymorphism, Single Nucleotide ,Article ,Joubert syndrome ,Cystic kidney disease ,Antigens, Neoplasm ,Two-Hybrid System Techniques ,medicine ,Humans ,Abnormalities, Multiple ,Cilia ,Proteins ,Sequence Analysis, DNA ,medicine.disease ,Radiography ,Cytoskeletal Proteins ,Ciliopathy ,Genetic defects of metabolism [UMCN 5.1] ,Haplotypes ,Mutation ,Ataxia ,Immunity, infection and tissue repair [NCMLS 1] ,Microsatellite Repeats - Abstract
Roepman, Ronald/0000-0002-5178-8163; van Beersum, Sylvia E.C./0000-0002-4552-2908; Coene, Karlien/0000-0001-9873-1458; Dibooglu, Sel/0000-0002-3865-5868; Moens, Cecilia/0000-0002-1099-0728; Davis, Erica/0000-0002-2412-8397; Otto, Edgar/0000-0002-2387-9973; Katsanis, Nicholas/0000-0002-2480-0171 WOS: 000261006900002 PubMed: 18950740 Joubert syndrome and related disorders (JSRD) are primarily autosomal-recessive conditions characterized by hypotonia, ataxia, abnormal eye movements, and intellectual disability with a distinctive mid-hindbrain malformation. Variable features include retinal dystrophy, cystic kidney disease, and liver fibrosis. JSRD) are included in the rapidly expanding group of disorders called ciliopathies, because all six gene products implicated in JSRD (NPHP1, AHI1, CEP290, RPGRIP1L, TMEM67, and ARL13B) function in the primary cilium/basal body organelle. By using homozygosity mapping in consanguineous families, we identify loss-of-function Mutations in CC2D2A in JSRD patients with and without retinal, kidney, and liver disease. CC2D2A is expressed in all fetal and adult tissues tested. In ciliated cells, we observe localization of recombinant CC2D2A at the basal body and colocalization with CEP290, whose cognate gene is mutated in multiple hereditary ciliopathies. In addition, the proteins can physically interact in vitro, as shown by yeast two-hybrid and GSTpulldown experiments. A nonsense mutation in the zebrafish CC2D2A ortholog (sentinel) results in pronephric cysts, a hallmark of ciliary dysfunction analogous to human cystic kidney disease. Knockdown of cep290 function in sentinel fish results in a synergistic pronephric cyst phenotype, revealing a genetic interaction between CC2D2A and CEP290 and implicating CC2D2A in cilium/basal body function. These observations extend the genetic spectrum of JSRD and provide a model system for Studying extragenic modifiers in JSRD and other ciliopathies. US National Institutes of HealthUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USA [K23NS45832]; NCRRUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Center for Research Resources (NCRR) [5KI.2RR025015]; University of Washington Center on Human Development and DisabilityUniversity of Washington [P30HD02274]; Howard Hughes Medical InstituteHoward Hughes Medical Institute; March of Dimes EndowmentMarch of Dimes; Dutch Kidney Foundation [C04.2112]; EVIGENORETEuropean Union (EU) [LSHG-CT-2005 512036]; Netherlands Organisation for Scientific ResearchNetherlands Organization for Scientific Research (NWO) [Vidi-91786396]; [K24HD46712]; [P30ES07033]; [021.001.014] We thank all the participating families with Joubert syndrome and M. Landsverk, R. Howard, J. Adkins, and members of the Moens laboratory for expert technical assistance and helpful discussions. This work was supported by the US National Institutes of Health (grants K23NS45832 to M.A.P, K24HD46712 to I.A.G., NCRR 5KI.2RR025015 to D.D., and P30ES07033 to F.M.F.), the University of Washington Center on Human Development and Disability (P30HD02274 to D.D., M.A.P, and I.A.G.), Howard Hughes Medical Institute (to C.B.M.), the University of Washington Center on Ecogenetics and Environmental Health and the March of Dimes Endowment for Healthier Babies at Children's Hospital in Seattle (to D.D., M.A.P., and I.A.G.), as well as grants from the Dutch Kidney Foundation (C04.2112 to N.V.A.M.K. and R.R.), EVIGENORET (LSHG-CT-2005 512036 to R.R.), and the Netherlands Organisation for Scientific Research (NWO Vidi-91786396 to R.R. and NWO Toptalent-021.001.014 to K.L.M.C.).
- Published
- 2008
18. Comparison of the Cytotoxicity of the Nitroaromatic Drug Flutamide to Its Cyano Analogue in the Hepatocyte Cell Line TAMH: Evidence for Complex I Inhibition and Mitochondrial Dysfunction Using Toxicogenomic Screening
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Han Kiat Ho, Kevin J. Coe, Libby Woodke, Stephen R. Plymate, Frederico M. Farin, Sidney D. Nelson, Richard P. Beyer, Peter M. Rademacher, Yankai Jia, Theo K. Bammler, and Nelson Fausto
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Male ,Programmed cell death ,Cell Survival ,Oxidative phosphorylation ,Mitochondrion ,Pharmacology ,Biology ,Toxicology ,Article ,Lethal Dose 50 ,Mice ,Adenosine Triphosphate ,Cell Line, Tumor ,Nitriles ,medicine ,Animals ,Humans ,Viability assay ,Cytotoxicity ,Electron Transport Complex I ,Dose-Response Relationship, Drug ,Molecular Structure ,virus diseases ,Prostatic Neoplasms ,Androgen Antagonists ,General Medicine ,medicine.disease ,Microarray Analysis ,Nitro Compounds ,Flutamide ,respiratory tract diseases ,Mitochondria ,Mitochondrial toxicity ,medicine.anatomical_structure ,Gene Expression Regulation ,Hepatocyte ,Toxicity ,Hepatocytes ,Drug Screening Assays, Antitumor - Abstract
Flutamide (FLU) is an antiandrogen primarily used in the treatment of metastatic prostate cancer. It is an idiosyncratic hepatotoxicant that sometimes results in severe liver toxicity. FLU possesses a nitroaromatic group, which may be a contributor to its mechanism of toxicity. A nitro to cyano analogue of FLU (CYA) was synthesized and used to test this hypothesis in the TGFalpha-transfected mouse hepatocyte cell line (TAMH). MTT cell viability assays and confocal microscopy showed that hepatocytes are more sensitive to cytotoxicity caused by FLU than CYA (LD 50 75 vs 150 microM, respectively). Despite the structural modification, the antiandrogen activity of CYA is comparable to that of FLU. Comparisons of transcriptomic changes caused by FLU with those caused by a panel of known cytotoxicants [acetaminophen, tetrafluoroethylcysteine, diquat, and rotenone (ROT)] indicated that FLU results in a temporal gene expression pattern similar to ROT, a known inhibitor of complex I of the electron transport chain. A subsequent microarray analysis comparing FLU to CYA and ROT revealed many similarities among these three compounds; however, FLU and ROT result in more substantial changes than CYA in the expression of genes associated with oxidative phosphorylation, fatty acid beta-oxidation, antioxidant defense, and cell death pathways. Electron microscopy confirmed that FLU leads to mitochondrial toxicity that has some similarities to the mitochondrial effects of ROT, but the morphologic changes caused by FLU were greater in scope with both intra- and intercellular manifestations. Biochemical studies confirmed that both ROT and FLU deplete cellular ATP levels and inhibit complex I of the electron transport chain to a greater extent than CYA. Thus, as compared to CYA, the nitroaromatic group of FLU enhances cytotoxicity to hepatocytes, likely through mechanisms involving mitochondrial dysfunction and ATP depletion that include complex I inhibition.
- Published
- 2007
19. In-vitro and in-vivo effects of the CYP2C9*11 polymorphism on warfarin metabolism and dose
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Christophe L. M. J. Verlinde, Allan E. Rettie, Guoying Tai, David L. Veenstra, Albert W. Dreisbach, Frederico M. Farin, and Mark J. Rieder
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Male ,medicine.medical_specialty ,Genotype ,medicine.drug_class ,Metabolic Clearance Rate ,Biology ,In Vitro Techniques ,Hydroxylation ,Polymerase Chain Reaction ,Linkage Disequilibrium ,White People ,Japan ,In vivo ,Polymorphism (computer science) ,Internal medicine ,Genetics ,medicine ,Humans ,General Pharmacology, Toxicology and Pharmaceutics ,Allele ,Molecular Biology ,CYP2C9 ,Genetics (clinical) ,Cytochrome P-450 CYP2C9 ,NADPH-Ferrihemoprotein Reductase ,Polymorphism, Genetic ,Dose-Response Relationship, Drug ,Anticoagulant ,Warfarin ,Temperature ,Anticoagulants ,Middle Aged ,Endocrinology ,Mutagenesis, Site-Directed ,Molecular Medicine ,Female ,Aryl Hydrocarbon Hydroxylases ,Drug metabolism ,Pharmacogenetics ,medicine.drug - Abstract
To determine the in-vitro and in-vivo effects of the CYP2C9*11 polymorphism on (S)-warfarin metabolism.The *11 allele that results in mutation of Arg335--Trp occurred with a frequency of approximately 1% in Caucasian and African-American populations. Four subjects carrying the *1/*11 genotype were identified in a clinical cohort of 192 warfarin patients. Compared to control subjects with the *1/*11 genotype (n=127), the *1/*11 group exhibited a 33% reduction in warfarin maintenance dose, that was independent of study population age or INR. In-vitro studies directed towards understanding the mechanism of reduced in-vivo activity revealed very low levels of holo-CYP2C9.11 expression in insect cells and decreased solubility in the presence of detergent. Membrane preparations of CYP2C9.11 contained inactive P420 and exhibited a shorter half-life for thermally induced conversion of P450 to P420 than CYP2C9.1. Metabolic studies demonstrated that functional CYP2C9.11 possessed similar (S)-warfarin hydroxylation regioselectivity and modestly reduced catalytic efficiency relative to the wild-type enzyme.In-vivo reduction in CYP2C9 (S)-warfarin activity due to the CYP2C9*11 polymorphism may largely be a consequence of decreased enzyme stability resulting in compromised expression of holo-enzyme. Increased enzyme lability of CYP2C9.11 may be related to improper folding due to the disruption of conserved salt-bridge and hydrogen bonding contacts in the loop region between the J and J' helices of the protein.
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- 2005
20. CYP2C9 haplotype structure in European American warfarin patients and association with clinical outcomes
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David L, Veenstra, David K, Blough, Mitchell K, Higashi, Frederico M, Farin, Sengkeo, Srinouanprachan, Mark J, Rieder, and Allan E, Rettie
- Subjects
Family Health ,Treatment Outcome ,Dose-Response Relationship, Drug ,Gene Frequency ,Haplotypes ,Humans ,Aryl Hydrocarbon Hydroxylases ,Warfarin ,Polymorphism, Single Nucleotide ,Sequence Analysis ,Alleles ,White People ,Cytochrome P-450 CYP2C9 - Abstract
The goal of this study was to define the haplotype structure of the cytochrome P450 (CYP) 2C9 gene in a European American population and evaluate associations between CYP2C9 haplotypes and anticoagulation-related outcomes.Genomic deoxyribonucleic acid from 192 European American patients stabilized on warfarin therapy was resequenced across 60 kilobases of the CYP2C9 genomic region, including all exons, dense sampling of introns, approximately 10 kilobases of the 5'-flanking region, and approximately 1.7 kilobases of the 3'-untranslated region.A total of 132 single nucleotide polymorphisms (SNPs) were detected, of which 47 were present in the 5'-flanking promoter region, 11 in the exonic coding region, and 74 in the intron regions. Nine nonsynonymous SNPs in the coding region consisted of CYP2C9*2 , *3 , *9 , *11 , and *12 ; R125H; and 3 new structural variants. Sixty SNPs were present at a minor allele frequency of greater than 5%, and from this subpopulation, 23 haplotypes were inferred. Clustering analysis identified 6 major groups of related haplotypes that were further designated 1A, 1B, 1C, 1D, 2, or 3. The *2 and *3 SNPs appeared exclusively in groups 2 and 3, and these groups combined were associated with significantly reduced warfarin maintenance doses, longer time to stable dosing, and increased risk of bleeding. In contrast, combinations of haplotypes 1A, 1B, 1C, and 1D were not associated with differences in any of these outcomes.These data establish a whole-gene, high-resolution haplotype structure for CYP2C9 in a European American patient population and suggest that genetic variation in exons, rather than the promoter or other regulatory regions, is largely responsible for warfarin sensitivity associated with CYP2C9 variants in this population.
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- 2005
21. Phytochemical-induced changes in gene expression of carcinogen-metabolizing enzymes in cultured human primary hepatocytes
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Kerstin Gross-Steinmeyer, Donald R. Buhler, Theo K. Bammler, David L. Eaton, F. Liu, Julia H. Tracy, Patricia L. Stapleton, S.H. Safe, Stephen C. Strom, Sean D. Quigley, and Frederico M. Farin
- Subjects
Phenethyl isothiocyanate ,Curcumin ,Indoles ,Health, Toxicology and Mutagenesis ,Diindolylmethane ,Biology ,Toxicology ,Biochemistry ,chemistry.chemical_compound ,Cytochrome P-450 CYP1A2 ,Isothiocyanates ,Gene expression ,Cytochrome P-450 CYP1A1 ,NAD(P)H Dehydrogenase (Quinone) ,Anticarcinogenic Agents ,Humans ,Carcinogen ,Glutathione Transferase ,Pharmacology ,Isoxanthohumol ,General Medicine ,Glutathione ,Plants ,Molecular biology ,Enzymes ,chemistry ,Gene Expression Regulation ,Sulfoxides ,Flavanones ,Inactivation, Metabolic ,Carcinogens ,Hepatocytes ,Carrier Proteins ,Thiocyanates ,Sulforaphane - Abstract
1. The naturally occurring compounds curcumin (CUR), 3,3'-diindolylmethane (DIM), isoxanthohumol (IXN), 8-prenylnaringenin (8PN), phenethyl isothiocyanate (PEITC) and sulforaphane (SFN) protect animals against chemically induced tumours. Putative chemoprotective mechanisms include modulated expression of hepatic biotransformation enzymes. However, few, if any, studies have used human primary cells as test models. 2. The present study investigated the effects of these phytochemicals on the expression of four carcinogenesis-relevant enzymes--cytochrome P450 (CYP)1A1 and 1A2, NAD(P)H:quinone oxidoreductase (NQO1) and glutathione S-transferase A1 (GSTA1)--in primary cultures of freshly isolated human hepatocytes. 3. Quantitative RT-PCR analyses demonstrated that CYP1A1 was up-regulated by PEITC and DIM in a dose-dependent manner. CYP1A2 transcription was significantly activated following DIM, IXN, 8PN and PEITC treatments. DIM exhibited a remarkably effective induction response of CYP1A1 (474-, 239- and 87-fold at 50, 25 and 10 microM, respectively) and CYP1A2 (113-, 70- and 31-fold at 50, 25 and 10 microM, respectively), that was semiquantitatively reflected in protein levels. NQO1 expression responded to PEITC (11 x at 25 microM), DIM (4.5 x at 50 microM) and SFN (5 x at 10 microM) treatments. No significant effects on GSTA1 transcription were seen. 4. The findings show novel and unexpected effects of these phytochemicals on the expression of human hepatic biotransformation enzymes that play key roles in chemical-induced carcinogenesis.
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- 2005
22. p53 Contributes to Differentiating Gene Expression following Exposure to Acetaminophen and Its Less Hepatotoxic Regioisomer Both In Vitro and In Vivo
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Richard P. Beyer, Michael L. Garcia, Theo K. Bammler, Duy Q. Nguyen, Frederico M. Farin, Brendan D. Stamper, Terrance J. Kavanagh, and Sidney D. Nelson
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p53 ,Microarray ,Pharmacology ,Bioinformatics ,Proteomics ,Transcriptome ,03 medical and health sciences ,0302 clinical medicine ,AMAP ,In vivo ,Gene expression ,Genetics ,Medicine ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Original Research ,acetaminophen ,030304 developmental biology ,0303 health sciences ,business.industry ,digestive, oral, and skin physiology ,TAMH ,In vitro ,Computer Science Applications ,toxicogenomics ,030220 oncology & carcinogenesis ,Toxicity ,Toxicogenomics ,business ,microarray - Abstract
The goal of the present study was to compare hepatic toxicogenomic signatures across in vitro and in vivo mouse models following exposure to acetaminophen (APAP) or its relatively nontoxic regioisomer 3′-hydroxyacetanilide (AMAP). Two different Affymetrix microarray platforms and one Agilent Oligonucleotide microarray were utilized. APAP and AMAP treatments resulted in significant and large changes in gene expression that were quite disparate, and likely related to their different toxicologic profiles. Ten transcripts, all of which have been implicated in p53 signaling, were identified as differentially regulated at all time-points following APAP and AMAP treatments across multiple microarray platforms. Protein-level quantification of p53 activity aligned with results from the transcriptomic analysis, thus supporting the implicated mechanism of APAP-induced toxicity. Therefore, the results of this study provide good evidence that APAP-induced p53 phosphorylation and an altered p53-driven transcriptional response are fundamental steps in APAP-induced toxicity.
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- 2015
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23. Genetic susceptibility to mercury neurotoxicity in children
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Michael D. Martin, Nicholas J. Heyer, Frederico M. Farin, James S. Woods, and Joan Russo
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Cellular and Molecular Neuroscience ,Developmental Neuroscience ,chemistry ,Neurotoxicity ,medicine ,Genetic predisposition ,chemistry.chemical_element ,Pharmacology ,Toxicology ,medicine.disease ,Mercury (element) - Published
- 2014
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24. PIII-21Prevalence of NEDD4L cryptic splice site polymorphism in African-Americans with hypertension
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Albert W. Dreisbach, Juan J.L. Lertora, A. Sigel, Frederico M. Farin, Shanker Japa, H Wilkerson, A. E. Hess, and W Landry
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Pharmacology ,Genetics ,NEDD4L ,Cryptic splice site ,Pharmacology (medical) ,Biology - Published
- 2006
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- View/download PDF
25. 199 PREVALENCE OF CYP2C9, 2J2, AND SOLUBLE EPOXIDE HYDROLASE POLYMORHISMS IN AFRICAN-AMERICANS WITH END-STAGE RENAL DISEASE: Table
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A. Sigel, Shanker Japa, Juan J.L. Lertora, Albert W. Dreisbach, A. E. Hess, Allan E. Rettie, and Frederico M. Farin
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Epoxide hydrolase 2 ,medicine.medical_specialty ,Prevalence ,General Medicine ,Biology ,Peripheral blood mononuclear cell ,General Biochemistry, Genetics and Molecular Biology ,CYP2J2 ,End stage renal disease ,Pathogenesis ,Endocrinology ,Internal medicine ,medicine ,Allele ,CYP2C9 - Abstract
CYP2C9, CYP2J2, and soluble epoxide hydrolase (sEH) have been shown to be involved in the formation and metabolism of vasoactive epoxides of the epoxygenase pathway which have been proposed to play a role in the pathogenesis of hypertension and progression of renal failure. We studied the frequency of CYP2C9*8 and *11, sEH R287Q and anR403insertion, and CYP2J2*2-*7 and the newly identified CYP2J2 polymorphisms R49S, L50L, V113M, N124S in 97 AA end-stage renal disease (ESRD) patients and 84 healthy AA to determine whether there is a significant difference in prevalence rates of these polymorphisms. The mean age of the ESRD patients 53.3 ± 12.1 years (mean ± SD) and the healthy AA was 36.8 ± 8.6 years. The ESRD patients and healthy subjects were 43.3% and 40.3% female, respectively. The DNA was isolated from peripheral blood mononuclear cells and then genotyped for the variant alleles using TaqMan-based allelic discrimination assays at the University of Washington in Seattle. The prevalence of the new CYP2J2 variant alleles ranged from 0 to 1.1% in the healthy and ESRD populations except for CYP2J2*7 allele (Table). Additional results for higher frequency alleles are shown in the table below. There was no significant difference in prevalence rates of any of the variant alleles between ESRD and healthy subjects.
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- 2005
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26. Comparison of the Cytotoxicity of the Nitroaromatic Drug Flutamide to Its Cyano Analogue in the Hepatocyte Cell Line TAMH: Evidence for Complex I Inhibition and Mitochondrial Dysfunction Using Toxicogenomic Screening.
- Author
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Kevin J. Coe, Yankai Jia, Han Kiat Ho, Peter Rademacher, Theo K. Bammler, Richard P. Beyer, Frederico M. Farin, Libby Woodke, Stephen R. Plymate, Nelson Fausto, and Sidney D. Nelson
- Published
- 2007
- Full Text
- View/download PDF
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