9 results on '"Frank DeFalco"'
Search Results
2. Empirical assessment of alternative methods for identifying seasonality in observational healthcare data
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Anthony Molinaro and Frank DeFalco
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ACHILLES ,ARIMA ,CASTOR ,Classification ,Common data model ,Cyclical ,Medicine (General) ,R5-920 - Abstract
Abstract Background Seasonality classification is a well-known and important part of time series analysis. Understanding the seasonality of a biological event can contribute to an improved understanding of its causes and help guide appropriate responses. Observational data, however, are not comprised of biological events, but timestamped diagnosis codes the combination of which (along with additional requirements) are used as proxies for biological events. As there exist different methods for determining the seasonality of a time series, it is necessary to know if these methods exhibit concordance. In this study we seek to determine the concordance of these methods by applying them to time series derived from diagnosis codes in observational data residing in databases that vary in size, type, and provenance. Methods We compared 8 methods for determining the seasonality of a time series at three levels of significance (0.01, 0.05, and 0.1), against 10 observational health databases. We evaluated 61,467 time series at each level of significance, totaling 184,401 evaluations. Results Across all databases and levels of significance, concordance ranged from 20.2 to 40.2%. Across all databases and levels of significance, the proportion of time series classified seasonal ranged from 4.9 to 88.3%. For each database and level of significance, we computed the difference between the maximum and minimum proportion of time series classified seasonal by all methods. The median within-database difference was 54.8, 34.7, and 39.8%, for p
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- 2022
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3. Treatment patterns and sequences of pharmacotherapy for patients diagnosed with depression in the United States: 2014 through 2019
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David M. Kern, M. Soledad Cepeda, Frank Defalco, and Mila Etropolski
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Depression ,Treatment patterns ,Antidepressants ,Real-world evidence ,Psychiatry ,RC435-571 - Abstract
Abstract Background Understanding how patients are treated in the real-world is vital to identifying potential gaps in care. We describe the current pharmacologic treatment patterns for the treatment of depression. Methods Patients with depression were identified from four large national claims databases during 1/1/2014–1/31/2019. Patients had ≥2 diagnoses for depression or an inpatient hospitalization with a diagnosis of depression. Patients were required to have enrollment in the database ≥1 year prior to and 3 years following their first depression diagnosis. Treatment patterns were captured at the class level and included selective serotonin reuptake inhibitors (SSRIs), serotonin and norepinephrine reuptake inhibitors, tricyclic antidepressants, other antidepressants, anxiolytics, hypnotics/sedatives, and antipsychotics. Treatment patterns were captured during all available follow-up. Results We identified 269,668 patients diagnosed with depression. The proportion not receiving any pharmacological treatment during follow-up ranged from 29 to 52%. Of the treated, approximately half received ≥2 different classes of therapy, a quarter received ≥3 classes and more than 10% received 4 or more. SSRIs were the most common first-line treatment; however, many patients received an anxiolytic, hypnotic/sedative, or antipsychotic prior to any antidepressive treatment. Treatment with a combination of classes ranged from approximately 20% of first-line therapies to 40% of fourth-line. Conclusions Many patients diagnosed with depression go untreated and many others receive a non-antidepressant medication class as their first treatment. More than half of patients received more than one type of treatment class during the study follow up, suggesting that the first treatment received may not be optimal for most patients.
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- 2020
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4. Using the Data Quality Dashboard to Improve the EHDEN Network
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Clair Blacketer, Erica A. Voss, Frank DeFalco, Nigel Hughes, Martijn J. Schuemie, Maxim Moinat, and Peter R. Rijnbeek
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data quality ,OMOP CDM ,EHDEN ,healthcare data ,real world data ,RWD ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Federated networks of observational health databases have the potential to be a rich resource to inform clinical practice and regulatory decision making. However, the lack of standard data quality processes makes it difficult to know if these data are research ready. The EHDEN COVID-19 Rapid Collaboration Call presented the opportunity to assess how the newly developed open-source tool Data Quality Dashboard (DQD) informs the quality of data in a federated network. Fifteen Data Partners (DPs) from 10 different countries worked with the EHDEN taskforce to map their data to the OMOP CDM. Throughout the process at least two DQD results were collected and compared for each DP. All DPs showed an improvement in their data quality between the first and last run of the DQD. The DQD excelled at helping DPs identify and fix conformance issues but showed less of an impact on completeness and plausibility checks. This is the first study to apply the DQD on multiple, disparate databases across a network. While study-specific checks should still be run, we recommend that all data holders converting their data to the OMOP CDM use the DQD as it ensures conformance to the model specifications and that a database meets a baseline level of completeness and plausibility for use in research.
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- 2021
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5. Phenotype Algorithms for the Identification and Characterization of Vaccine-Induced Thrombotic Thrombocytopenia in Real World Data
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Azza Shoaibi, Gowtham A. Rao, Erica A. Voss, Anna Ostropolets, Miguel Angel Mayer, Juan Manuel Ramírez-Anguita, Filip Maljković, Biljana Carević, Scott Horban, Daniel R. Morales, Talita Duarte-Salles, Clement Fraboulet, Tanguy Le Carrour, Spiros Denaxas, Vaclav Papez, Luis H. John, Peter R. Rijneek, Evan Minty, Thamir M. Alshammari, Rupa Makadia, Clair Blacketer, Frank DeFalco, Anthony G. Sena, Marc A. Suchard, Daniel Prieto-Alhambra, Patrick B. Ryan, and Medical Informatics
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Pharmacology ,COVID-19 Vaccines ,COVID-19 ,Thrombosis ,Toxicology ,Thrombocytopenia ,Vacunes -- Efectes secundaris ,Cohort Studies ,Fenotip ,Phenotype ,SDG 3 - Good Health and Well-being ,Trombocitopènia ,Humans ,Pharmacology (medical) ,Algorithms ,Retrospective Studies - Abstract
Introduction: vaccine-induced thrombotic thrombocytopenia (VITT) has been identified as a rare but serious adverse event associated with coronavirus disease 2019 (COVID-19) vaccines. Objectives: in this study, we explored the pre-pandemic co-occurrence of thrombosis with thrombocytopenia (TWT) using 17 observational health data sources across the world. We applied multiple TWT definitions, estimated the background rate of TWT, characterized TWT patients, and explored the makeup of thrombosis types among TWT patients. Methods: we conducted an international network retrospective cohort study using electronic health records and insurance claims data, estimating background rates of TWT amongst persons observed from 2017 to 2019. Following the principles of existing VITT clinical definitions, TWT was defined as patients with a diagnosis of embolic or thrombotic arterial or venous events and a diagnosis or measurement of thrombocytopenia within 7 days. Six TWT phenotypes were considered, which varied in the approach taken in defining thrombosis and thrombocytopenia in real world data. Results: overall TWT incidence rates ranged from 1.62 to 150.65 per 100,000 person-years. Substantial heterogeneity exists across data sources and by age, sex, and alternative TWT phenotypes. TWT patients were likely to be men of older age with various comorbidities. Among the thrombosis types, arterial thrombotic events were the most common. Conclusion: our findings suggest that identifying VITT in observational data presents a substantial challenge, as implementing VITT case definitions based on the co-occurrence of TWT results in large and heterogeneous incidence rate and in a cohort of patints with baseline characteristics that are inconsistent with the VITT cases reported to date. This project has received funding from the Innovative Medicines Initiative 2 Joint Undertaking (JU) under grant agreement No 806968. The JU receives support from the European Union’s Horizon 2020 research and innovation program and EFPIA. Funders had no role in the conceptualization, design, data collection, analysis, decision to publish, or preparation of the manuscript.
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- 2022
6. Empirical Assessment of Alternative Methods for Identifying Seasonality in Observational Healthcare Data
- Author
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Anthony Molinaro and Frank DeFalco
- Subjects
Databases, Factual ,Epidemiology ,Research Design ,Data Collection ,Humans ,Health Informatics ,Seasons ,Delivery of Health Care - Abstract
Background Seasonality classification is a well-known and important part of time series analysis. Understanding the seasonality of a biological event can contribute to an improved understanding of its causes and help guide appropriate responses. Observational data, however, are not comprised of biological events, but timestamped diagnosis codes the combination of which (along with additional requirements) are used as proxies for biological events. As there exist different methods for determining the seasonality of a time series, it is necessary to know if these methods exhibit concordance. In this study we seek to determine the concordance of these methods by applying them to time series derived from diagnosis codes in observational data residing in databases that vary in size, type, and provenance. Methods We compared 8 methods for determining the seasonality of a time series at three levels of significance (0.01, 0.05, and 0.1), against 10 observational health databases. We evaluated 61,467 time series at each level of significance, totaling 184,401 evaluations. Results Across all databases and levels of significance, concordance ranged from 20.2 to 40.2%. Across all databases and levels of significance, the proportion of time series classified seasonal ranged from 4.9 to 88.3%. For each database and level of significance, we computed the difference between the maximum and minimum proportion of time series classified seasonal by all methods. The median within-database difference was 54.8, 34.7, and 39.8%, for p Conclusion Methods of binary seasonality classification when applied to time series derived from diagnosis codes in observational health data produce inconsistent results. The methods exhibit considerable discord within all databases, implying that the discord is a result of the difference between the methods themselves and not due to the choice of database. The results indicate that researchers relying on automated methods to assess the seasonality of time series derived from diagnosis codes in observational data should be aware that the methods are not interchangeable and thus the choice of method can affect the generalizability of their work. Seasonality determination is highly dependent on the method chosen.
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- 2021
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7. Characteristics and outcomes of over 300,000 patients with COVID-19 and history of cancer in the United States and Spain
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Elena Roel, Andrea Pistillo, Martina Recalde, A.G. (Anthony) Sena, Sergio Fernandez-Bertolin, Maria Aragón, Diana Puente, Waheed Ul Rahman Ahmed, Heba Alghoul, Osaid Alser, Thamir M. Alshammari, Carlos Areia, M.S. (Clair) Blacketer, William Carter, Paula Casajust, Aedin C. Culhane, Dalia Dawoud, Frank DeFalco, Scott DuVall, Thomas Falconer, Asieh Golozar, Mengchun Gong, Laura Hester, George Hripcsak, Eng Hooi Tan, Hokyun Jeon, Jitendra Jonnagaddala, Lana Yin Hui Lai, Kristine E. Lynch, Michael E. Matheny, Daniel R. Morales, Karthik Natarajan, Fredrik Nyberg, Anna Ostropolets, Jose D. Posada, Albert Prats-Uribe, Christian Reich, Donna R. Rivera, Lisa M. Schilling, I Soerjomataram, Karishma Shah, Nigam H. Shah, Yang Shen, Matthew Spotniz, Vignesh Subbian, Marc A. Suchard, Annalisa Trama, Lin Zhang, Y (Ying) Zhang, Patrick B. Ryan, Daniel Prieto-Alhambra, Kristin Kostka, Talita Duarte-Salles, Elena Roel, Andrea Pistillo, Martina Recalde, A.G. (Anthony) Sena, Sergio Fernandez-Bertolin, Maria Aragón, Diana Puente, Waheed Ul Rahman Ahmed, Heba Alghoul, Osaid Alser, Thamir M. Alshammari, Carlos Areia, M.S. (Clair) Blacketer, William Carter, Paula Casajust, Aedin C. Culhane, Dalia Dawoud, Frank DeFalco, Scott DuVall, Thomas Falconer, Asieh Golozar, Mengchun Gong, Laura Hester, George Hripcsak, Eng Hooi Tan, Hokyun Jeon, Jitendra Jonnagaddala, Lana Yin Hui Lai, Kristine E. Lynch, Michael E. Matheny, Daniel R. Morales, Karthik Natarajan, Fredrik Nyberg, Anna Ostropolets, Jose D. Posada, Albert Prats-Uribe, Christian Reich, Donna R. Rivera, Lisa M. Schilling, I Soerjomataram, Karishma Shah, Nigam H. Shah, Yang Shen, Matthew Spotniz, Vignesh Subbian, Marc A. Suchard, Annalisa Trama, Lin Zhang, Y (Ying) Zhang, Patrick B. Ryan, Daniel Prieto-Alhambra, Kristin Kostka, and Talita Duarte-Salles
- Abstract
Background: We described the demographics, cancer subtypes, comorbidities, and outcomes of patients with a history of cancer and coronavirus disease 2019 (COVID-19). Second, we compared patients hospitalized with COVID-19 to patients diagnosed with COVID-19 and patients hospitalized with influenza. Methods: We conducted a cohort study using eight routinely collected health care databases from Spain and the United States, standardized to the Observational Medical Outcome Partnership common data model. Three cohorts of patients with a history of cancer were included: (i) diagnosed with COVID-19, (ii) hospitalized with COVID-19, and (iii) hospitalized with influenza in 2017 to 2018. Patients were followed from index date to 30 days or death. We reported demographics, cancer subtypes, comorbidities, and 30-day outcomes. Results: We included 366,050 and 119,597 patients diagno
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- 2021
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8. Increasing trust in real-world evidence through evaluation of observational data quality
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M.S. (Clair) Blacketer, Frank DeFalco, Patrick B. Ryan, P.R. (Peter) Rijnbeek, M.S. (Clair) Blacketer, Frank DeFalco, Patrick B. Ryan, and P.R. (Peter) Rijnbeek
- Abstract
OBJECTIVE: Advances in standardization of observational healthcare data have enabled methodological breakthroughs, rapid global collaboration, and generation of real-world evidence to improve patient outcomes. Standardizations in data structure, such as use of common data models, need to be coupled with standardized approaches for data quality assessment. To ensure confidence in real-world evidence generated from the analysis of real-world data, one must first have confidence in the data itself. MATERIALS AND METHODS: We describe the implementation of check types across a data quality framework of conformance, completeness, plausibility, with both verification and validation. We illustrate how data quality checks, paired with decision thresholds, can be configured to customize data quality reporting across a range of observational health data sources. We dis
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- 2021
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9. Characteristics and outcomes of 118,155 COVID-19 individuals with a history of cancer in the United States and Spain
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Diana Puente Dr, Daniel R Morales Dr, Anthony G Sena Mr, Heba Alghoul Mr, Elena Roel Mrs, Donna Rivera Mrs, Nigam Shah Dr, Matthew Spotnitz Mr, Vignesh Subbian Dr, Jose D Posada Dr, Clair Blacketer Mrs, Andrea Pistillo Mr, Albert Prats-Uribe Mr, Lana Yh Lai Dr, Eng Hooi Tan Dr, Marc A Suchard Dr, Anna Ostropolets Mrs, Thamir M Alshammari Dr, Kristine E Lynch Dr, George Hripcsak Mr, Mengchun Gong Mr, Laura Hester Dr, Frank DeFalco Mr, Asieh Golozar Dr, Thomas Falconer Mr, Maria Aragon Mrs, Christian G Reich Dr, Hokyun Jeon Mr, Karishma Shah Mrs, Scott L Duvall Dr, Talita Duarte-Salles Dr, Lisa M Schilling Mrs, Lin Zhang Dr, Karthik Natarajan Dr, Martina Recalde Mrs, Michael E Matheny Mr, Carlos Areia Mr, Fredrik Nyberg Dr, Daniel Prieto-Alhambra Dr, Annalisa Trama Dr, Patrick Ryan Dr, Kristin Kostka Mrs, William Carter Mr, Waheed-Ul-Rahman Ahmed Mr, Isabelle Soerjomataram Dr, Aedin C Culhane Dr, Yang Shen Mr, Osaid Alser Mr, Dalia Dawoud Dr, Ying Zhang Dr, Sergio Fernandez-Bertolin Mr, Jitendra Jonnagaddala Dr, and Paula Casajust Mrs
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Mortaility ,medicine.medical_specialty ,COVID19 ,SARS-CoV-2 ,Characterisation ,business.industry ,Cancer ,Hospital admission ,medicine.disease ,Breast cancer ,Internal medicine ,Health care ,Cohort ,medicine ,Etiology ,Observational study ,business ,Adverse effect ,Cohort study - Abstract
PurposeWe aimed to describe the demographics, cancer subtypes, comorbidities and outcomes of patients with a history of cancer with COVID-19 from March to June 2020. Secondly, we compared patients hospitalized with COVID-19 to patients diagnosed with COVID-19 and patients hospitalized with influenza.MethodsWe conducted a cohort study using eight routinely-collected healthcare databases from Spain and the US, standardized to the Observational Medical Outcome Partnership common data model. Three cohorts of patients with a history of cancer were included: i) diagnosed with COVID-19, ii) hospitalized with COVID-19, and iii) hospitalized with influenza in 2017-2018. Patients were followed from index date to 30 days or death. We reported demographics, cancer subtypes, comorbidities, and 30-day outcomes.ResultsWe included 118,155 patients with a cancer history in the COVID-19 diagnosed and 41,939 in the COVID-19 hospitalized cohorts. The most frequent cancer subtypes were prostate and breast cancer (range: 5-19% and 1-14% in the diagnosed cohort, respectively). Hematological malignancies were also frequent, with non-Hodgkin’s lymphoma being among the 5 most common cancer subtypes in the diagnosed cohort. Overall, patients were more frequently aged above 65 years and had multiple comorbidities. Occurrence of death ranged from 8% to 14% and from 18% to 26% in the diagnosed and hospitalized COVID-19 cohorts, respectively. Patients hospitalized with influenza (n=242,960) had a similar distribution of cancer subtypes, sex, age and comorbidities but lower occurrence of adverse events.ConclusionPatients with a history of cancer and COVID-19 have advanced age, multiple comorbidities, and a high occurence of COVID-19-related events. Additionaly, hematological malignancies were frequent in these patients.This observational study provides epidemiologic characteristics that can inform clinical care and future etiological studies.
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