97 results on '"Frank Alvaro"'
Search Results
2. Late effects in survivors of infant acute lymphoblastic leukaemia—a study of the Australian and New Zealand Children’s Haematology/Oncology Group
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Denitza Mironova, Chitra M. Saraswati, Peter Downie, Chow Yee Lai, Eleanor Cook, Vickyanne Carruthers, Perla Moukhaiber, Fiona Molloy, Joshua Serov, Elizabeth McKinnon, Frank Alvaro, Michael Osborn, Tamas Revesz, Tim Prestidge, Siobhan Cross, Caroline M. Bateman, Andrew S. Moore, Seong Lin Khaw, Marion K. Mateos, and Rishi S. Kotecha
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Published
- 2023
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3. A novel transcriptional signature identifies T-cell infiltration in high-risk paediatric cancer
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Chelsea Mayoh, Andrew J. Gifford, Rachael Terry, Loretta M. S. Lau, Marie Wong, Padmashree Rao, Tyler Shai-Hee, Federica Saletta, Dong-Anh Khuong-Quang, Vicky Qin, Marion K. Mateos, Deborah Meyran, Katherine E. Miller, Aysen Yuksel, Emily V. A. Mould, Rachel Bowen-James, Dinisha Govender, Akanksha Senapati, Nataliya Zhukova, Natacha Omer, Hetal Dholaria, Frank Alvaro, Heather Tapp, Yonatan Diamond, Luciano Dalla Pozza, Andrew S. Moore, Wayne Nicholls, Nicholas G. Gottardo, Geoffrey McCowage, Jordan R. Hansford, Seong-Lin Khaw, Paul J. Wood, Daniel Catchpoole, Catherine E. Cottrell, Elaine R. Mardis, Glenn M. Marshall, Vanessa Tyrrell, Michelle Haber, David S. Ziegler, Orazio Vittorio, Joseph A. Trapani, Mark J. Cowley, Paul J. Neeson, and Paul G. Ekert
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Paediatric cancer ,Tumour immune microenvironment ,T-cell infiltration ,Biomarkers ,Transcriptome signature ,Medicine ,Genetics ,QH426-470 - Abstract
Abstract Background Molecular profiling of the tumour immune microenvironment (TIME) has enabled the rational choice of immunotherapies in some adult cancers. In contrast, the TIME of paediatric cancers is relatively unexplored. We speculated that a more refined appreciation of the TIME in childhood cancers, rather than a reliance on commonly used biomarkers such as tumour mutation burden (TMB), neoantigen load and PD-L1 expression, is an essential prerequisite for improved immunotherapies in childhood solid cancers. Methods We combined immunohistochemistry (IHC) with RNA sequencing and whole-genome sequencing across a diverse spectrum of high-risk paediatric cancers to develop an alternative, expression-based signature associated with CD8+ T-cell infiltration of the TIME. Furthermore, we explored transcriptional features of immune archetypes and T-cell receptor sequencing diversity, assessed the relationship between CD8+ and CD4+ abundance by IHC and deconvolution predictions and assessed the common adult biomarkers such as neoantigen load and TMB. Results A novel 15-gene immune signature, Immune Paediatric Signature Score (IPASS), was identified. Using this signature, we estimate up to 31% of high-risk cancers harbour infiltrating T-cells. In addition, we showed that PD-L1 protein expression is poorly correlated with PD-L1 RNA expression and TMB and neoantigen load are not predictive of T-cell infiltration in paediatrics. Furthermore, deconvolution algorithms are only weakly correlated with IHC measurements of T-cells. Conclusions Our data provides new insights into the variable immune-suppressive mechanisms dampening responses in paediatric solid cancers. Effective immune-based interventions in high-risk paediatric cancer will require individualised analysis of the TIME.
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- 2023
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4. Prospective longitudinal evaluation of treatment-related toxicity and health-related quality of life during the first year of treatment for pediatric acute lymphoblastic leukemia
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Clarissa E. Schilstra, Karen McCleary, Joanna E. Fardell, Mark W. Donoghoe, Emma McCormack, Rishi S. Kotecha, Richard De Abreu Lourenco, Shanti Ramachandran, Ruelleyn Cockcroft, Rachel Conyers, Siobhan Cross, Luciano Dalla-Pozza, Peter Downie, Tamas Revesz, Michael Osborn, Frank Alvaro, Claire E. Wakefield, Glenn M. Marshall, Marion K. Mateos, and Toby N. Trahair
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ALL ,Health related quality of life ,Treatment related toxicity ,Quality of life ,Psychosocial ,Child ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Pediatric acute lymphoblastic leukemia (ALL) therapy is accompanied by treatment-related toxicities (TRTs) and impaired quality of life. In Australia and New Zealand, children with ALL are treated with either Children’s Oncology Group (COG) or international Berlin-Frankfurt-Munster (iBFM) Study Group-based therapy. We conducted a prospective registry study to document symptomatic TRTs (venous thrombosis, neurotoxicity, pancreatitis and bone toxicity), compare TRT outcomes to retrospective TRT data, and measure the impact of TRTs on children’s general and cancer-related health-related quality of life (HRQoL) and parents’ emotional well-being. Methods Parents of children with newly diagnosed ALL were invited to participate in the ASSET (Acute Lymphoblastic Leukaemia Subtypes and Side Effects from Treatment) study and a prospective, longitudinal HRQoL study. TRTs were reported prospectively and families completed questionnaires for general (Healthy Utility Index Mark 3) and cancer specific (Pediatric Quality of Life Inventory (PedsQL)-Cancer Module) health related quality of life as well the Emotion Thermometer to assess emotional well-being. Results Beginning in 2016, 260 pediatric patients with ALL were enrolled on the TRT registry with a median age at diagnosis of 59 months (range 1–213 months), 144 males (55.4%), majority with Pre-B cell immunophenotype, n = 226 (86.9%), 173 patients (66.5%) treated according to COG platform with relatively equal distribution across risk classification sub-groups. From 2018, 79 families participated in the HRQoL study through the first year of treatment. There were 74 TRT recorded, reflecting a 28.5% risk of developing a TRT. Individual TRT incidence was consistent with previous studies, being 7.7% for symptomatic VTE, 11.9% neurotoxicity, 5.4% bone toxicity and 5.0% pancreatitis. Children’s HRQoL was significantly lower than population norms throughout the first year of treatment. An improvement in general HRQoL, measured by the HUI3, contrasted with the lack of improvement in cancer-related HRQoL measured by the PedsQL Cancer Module over the first 12 months. There were no persisting differences in the HRQoL impact of COG compared to iBFM therapy. Conclusions It is feasible to prospectively monitor TRT incidence and longitudinal HRQoL impacts during ALL therapy. Early phases of ALL therapy, regardless of treatment platform, result in prolonged reductions in cancer-related HRQoL.
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- 2022
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5. Protocol for a comprehensive prospective cohort study of trio-based whole-genome sequencing for underlying cancer predisposition in paediatric and adolescent patients newly diagnosed with cancer: the PREDICT study
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Yuyan Chen, Mark Pinese, Claire Wakefield, Frank Alvaro, Katherine Tucker, Tracey A O’Brien, Vanessa J Tyrrell, Judy Kirk, Kate Hetherington, Eliza Courtney, Kristine Barlow-Stewart, Noemi Auxiliadora Fuentes Bolanos, Bhavna Padhye, Macabe Daley, Jacqueline Hunter, Meera Warby, Sarah Josephi-Taylor, Marie Wong-Erasmus, Paulette Barahona, Pamela Ajuyah, Ann-Kristin Altekoester, Loretta M S Lau, Dianne Sylvester, and Luciano Dalla Pozza
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Medicine - Abstract
Introduction Identifying an underlying germline cancer predisposition (CP) in a child with cancer has potentially significant implications for both the child and biological relatives. Cohort studies indicate that 10%–15% of paediatric cancer patients carry germline pathogenic or likely pathogenic variants in cancer predisposition genes, but many of these patients do not meet current clinical criteria for genetic testing. This suggests broad tumour agnostic germline testing may benefit paediatric cancer patients. However, the utility and psychosocial impact of this approach remain unknown. We hypothesise that an approach involving trio whole-genome germline sequencing (trio WGS) will identify children and families with an underlying CP in a timely fashion, that the trio design will streamline cancer risk counselling to at-risk relatives if CP was inherited, and that trio testing will not have a negative psychosocial impact on families.Method and analysis To test this, we present the Cancer PREDisposition In Childhood by Trio sequencing study (PREDICT). This study will assess the clinical utility of trio WGS to identify CP in unselected patients with cancer 21 years or younger in New South Wales, Australia. PREDICT will perform analysis of biological parents to determine heritability and will examine the psychosocial impact of this trio sequencing approach. PREDICT also includes a broad genomics research programme to identify new candidate genes associated with childhood cancer risk.Ethics and dissemination By evaluating the feasibility, utility and psychosocial impact of trio WGS to identify CP in paediatric cancer, PREDICT will inform how such comprehensive testing can be incorporated into a standard of care at diagnosis for all childhood cancer patients.Trial registration number NCT04903782.
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- 2023
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6. BRAF-mediated brain tumors in adults and children: A review and the Australian and New Zealand experience
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Sarah M. Trinder, Campbell McKay, Phoebe Power, Monique Topp, Bosco Chan, Santosh Valvi, Geoffrey McCowage, Dinisha Govender, Maria Kirby, David S. Ziegler, Neevika Manoharan, Tim Hassall, Stewart Kellie, John Heath, Frank Alvaro, Paul Wood, Stephen Laughton, Karen Tsui, Andrew Dodgshun, David D. Eisenstat, Raelene Endersby, Stephen J. Luen, Eng-Siew Koh, Hao-Wen Sim, Benjamin Kong, Nicholas G. Gottardo, James R. Whittle, Dong-Anh Khuong-Quang, and Jordan R. Hansford
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glioma ,gliomagenesis ,MAPK signaling ,BRAF ,BRAF inhibitors ,access ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
The mitogen-activated protein kinase (MAPK) pathway signaling pathway is one of the most commonly mutated pathways in human cancers. In particular, BRAF alterations result in constitutive activation of the rapidly accelerating fibrosarcoma–extracellular signal–regulated kinase–MAPK significant pathway, leading to cellular proliferation, survival, and dedifferentiation. The role of BRAF mutations in oncogenesis and tumorigenesis has spurred the development of targeted agents, which have been successful in treating many adult cancers. Despite advances in other cancer types, the morbidity and survival outcomes of patients with glioma have remained relatively stagnant. Recently, there has been recognition that MAPK dysregulation is almost universally present in paediatric and adult gliomas. These findings, accompanying broad molecular characterization of gliomas, has aided prognostication and offered opportunities for clinical trials testing targeted agents. The use of targeted therapies in this disease represents a paradigm shift, although the biochemical complexities has resulted in unexpected challenges in the development of effective BRAF inhibitors. Despite these challenges, there are promising data to support the use of BRAF inhibitors alone and in combination with MEK inhibitors for patients with both low-grade and high-grade glioma across age groups. Safety and efficacy data demonstrate that many of the toxicities of these targeted agents are tolerable while offering objective responses. Newer clinical trials will examine the use of these therapies in the upfront setting. Appropriate duration of therapy and durability of response remains unclear in the glioma patient cohort. Longitudinal efficacy and toxicity data are needed. Furthermore, access to these medications remains challenging outside of clinical trials in Australia and New Zealand. Compassionate access is limited, and advocacy for mechanism of action-based drug approval is ongoing.
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- 2023
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7. Finding Cases of Hepatitis C for Treatment Using Automated Screening in the Emergency Department is Effective, but What Is the Cost?
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David Stephen Prince, Julia Di Girolamo, Joseph Louis Pipicella, Melissa Bagatella, Tahrima Kayes, Frank Alvaro, Michael Maley, Hong Foo, Paul MacConachie Middleton, and Miriam Tania Levy
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Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Case detection remains a major challenge for hepatitis C virus (HCV) elimination. We have previously published results from a pilot of an emergency department (ED) semiautomated screening program, SEARCH; Screening Emergency Admissions at Risk of Chronic HCV. Several refinements to SEARCH have been developed to streamline and reduce cost. All direct costs of HCV testing until direct-acting antiviral (DAA) therapy initiation were calculated. Cost was assessed in 2018 Australian Dollars. A cost analysis of the initial program and refinements are presented. Sensitivity analysis to understand impact of variation in staff time, laboratory test cost, changes in HCV antibody (Ab) prevalence, RNA positivity percentage, and rate of linkage to care was conducted. Impact of refinements (SEARCH (2)) to cost is presented. The total SEARCH pilot, testing 5000 patients was estimated to cost $110,549.52 (range $92,109.79–$129,581.24) comprising of $68,278.67 for HCV Ab testing, $21,568.99 for follow-up and linkage to care of positive patients and $20,701.86 to prepare HCV RNA positive patients for treatment. Internal program refinements resulted in a 25% cost reduction. Following refinements, the cost of HCV antibody screening was $8.46 per test and the total cost per positive HCV Ab, positive HCV RNA, and per treated patient were $611.77, $2,168.64, and $3,566.11, respectively. Our sensitivity analysis indicates costs per HCV case found are modest so long as HCV Ab prevalence was at least 1%. ED screening is an affordable strategy for HCV case detection and elimination.
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- 2022
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8. Malignant Melanoma in Children and Adolescents Treated in Pediatric Oncology Centers: An Australian and New Zealand Children’s Oncology Group (ANZCHOG) Study
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Anne L. Ryan, Charlotte Burns, Aditya K. Gupta, Ruvishani Samarasekera, David S. Ziegler, Maria L. Kirby, Frank Alvaro, Peter Downie, Stephen J. Laughton, Siobhan Cross, Timothy Hassall, Geoff B. McCowage, Jordan R. Hansford, Rishi S. Kotecha, and Nicholas G. Gottardo
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cutaneous melanoma ,childhood ,dermatology ,outcome ,rare tumors ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
ObjectivesUnlike adults, malignant melanoma in children and adolescents is rare. In adult melanoma, significant progress in understanding tumor biology and new treatments, including targeted therapies and immunotherapy have markedly improved overall survival. In sharp contrast, there is a paucity of data on the biology and clinical behavior of pediatric melanoma. We report a national case series of all pediatric and adolescent malignant melanoma presenting to ANZCHOG Childhood Cancer Centers in Australia and New Zealand.MethodsA retrospective, descriptive, multi-center study was undertaken to identify patients less than 18 years of age treated for cutaneous malignant melanoma over a twenty-year period (1994 to 2014). Data on clinical characteristics, histopathology, and extent of disease, treatment and follow-up are described.ResultsA total of 37 cases of malignant melanoma were identified from all of the Australasian tertiary Childhood Cancer Centers. The median age was 10 years (range 1 month – 17 years). Clinically, the most common type of lesion was pigmented, occurring in sixteen (57%) patients, whilst amelanotic was seen in 7 patients (25%). In 11 (27.9%) the Breslow thickness was greater than 4mm. A total of 11 (29.7%) patients relapsed and 90% of these died of disease. Five-year event free survival (EFS) and overall survival were 63.2 (95% CI: 40.6 – 79.1) and 67.7% (95% CI: 45.1 – 82.6) respectively.ConclusionOur data confirms that melanoma is a rare presentation of cancer to tertiary Australasian Childhood Cancer Centers with only 37 cases identified over two decades. Notably, melanoma managed in Childhood Cancer Centers is frequently at an advanced stage, with a high percentage of patients relapsing and the majority of these patients who relapsed died of disease. This study confirms previous clinical and prognostic information to support the early multidisciplinary management in Childhood Cancer Centers, in conjunction with expert adult melanoma centers, of this rare and challenging patient group.
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- 2021
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9. Methotrexate-related central neurotoxicity: clinical characteristics, risk factors and genome-wide association study in children treated for acute lymphoblastic leukemia
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Marion K. Mateos, Glenn M. Marshall, Pasquale M. Barbaro, Michael C.J. Quinn, Carly George, Chelsea Mayoh, Rosemary Sutton, Tamas Revesz, Jodie E. Giles, Draga Barbaric, Frank Alvaro, Françoise Mechinaud, Daniel Catchpoole, John A. Lawson, Georgia Chenevix-Trench, Stuart MacGregor, Rishi S. Kotecha, Luciano Dalla-Pozza, and Toby N. Trahair
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Symptomatic methotrexate-related central neurotoxicity (MTX neurotoxicity) is a severe toxicity experienced during acute lymphoblastic leukemia (ALL) therapy with potential long-term neurologic complications. Risk factors and long-term outcomes require further study. We conducted a systematic, retrospective review of 1,251 consecutive Australian children enrolled on Berlin-Frankfurt-Münster or Children's Oncology Group-based protocols between 1998-2013. Clinical risk predictors for MTX neurotoxicity were analyzed using regression. A genome-wide association study (GWAS) was performed on 48 cases and 537 controls. The incidence of MTX neurotoxicity was 7.6% (n=95 of 1,251), at a median of 4 months from ALL diagnosis and 8 days after intravenous or intrathecal MTX. Grade 3 elevation of serum aspartate aminotransferase (P=0.005, odds ratio 2.31 [range, 1.28–4.16]) in induction/consolidation was associated with MTX neurotoxicity, after accounting for the only established risk factor, age ≥10 years. Cumulative incidence of CNS relapse was increased in children where intrathecal MTX was omitted following symptomatic MTX neurotoxicity (n=48) compared to where intrathecal MTX was continued throughout therapy (n=1,174) (P=0.047). Five-year central nervous system relapse-free survival was 89.2 4.6% when intrathecal MTX was ceased compared to 95.4 0.6% when intrathecal MTX was continued. Recurrence of MTX neurotoxicity was low (12.9%) for patients whose intrathecal MTX was continued after their first episode. The GWAS identified single-nucletide polymorphism associated with MTX neurotoxicity near genes regulating neuronal growth, neuronal differentiation and cytoskeletal organization (P
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- 2021
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10. A multicenter, randomized study of decitabine as epigenetic priming with induction chemotherapy in children with AML
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Lia Gore, Timothy J. Triche, Jason E. Farrar, Daniel Wai, Christophe Legendre, Gerald C. Gooden, Winnie S. Liang, John Carpten, David Lee, Frank Alvaro, Margaret E. Macy, Carola Arndt, Philip Barnette, Todd Cooper, Laura Martin, Aru Narendran, Jessica Pollard, Soheil Meshinchi, Jessica Boklan, Robert J. Arceci, and Bodour Salhia
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AML ,Epigenetics ,Pediatrics ,Pharmacokinetics ,Pharmacodynamics ,DNA methylation ,Medicine ,Genetics ,QH426-470 - Abstract
Abstract Background Decitabine is a deoxycytidine nucleoside derivative inhibitor of DNA-methyltransferases, which has been studied extensively and is approved for myelodysplastic syndrome in adults but with less focus in children. Accordingly, we conducted a phase 1 multicenter, randomized, open-label study to evaluate decitabine pre-treatment before standard induction therapy in children with newly diagnosed AML to assess safety and tolerability and explore a number of biologic endpoints. Results Twenty-four patients were fully assessable for all study objectives per protocol (10 in Arm A = epigenetic priming induction, 14 in Arm B = standard induction). All patients experienced neutropenia and thrombocytopenia. The most common grade 3 and 4 non-hematologic adverse events observed were gastrointestinal toxicities and hypophosphatemia. Plasma decitabine PK were similar to previously reported adult data. Overall CR/CRi was similar for the two arms. MRD negativity at end-induction was 85% in Arm A versus 67% in Arm B patients. DNA methylation measured in peripheral blood over the course of treatment tracked with blast clearance and matched marrow aspirates at day 0 and day 21. Unlike end-induction marrow analyses, promoter methylation in blood identified an apparent reversal of response in the lone treatment failure, 1 week prior to the patient’s marrow aspirate confirming non-response. Decitabine-induced effects on end-induction (day 35–43 following initiation of treatment) marrows in Arm A were reflected by changes in DNA methylation in matched paired marrow diagnostic aspirates. Conclusions This first-in-pediatrics trial demonstrates that decitabine prior to standard combination chemotherapy is feasible and well tolerated in children with newly diagnosed AML. Pre-treatment with decitabine may represent a newer therapeutic option for pediatric AML, especially as it appears to induce important epigenetic alterations. The novel biological correlates studied in this trial offer a clinically relevant window into disease progression and remission. Additional studies are needed to definitively assess whether decitabine can enhance durability responses in children with AML. Trial registration NCT01177540
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- 2017
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11. High prevalence of relapse in children with Philadelphia-like acute lymphoblastic leukemia despite risk-adapted treatment
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Susan L. Heatley, Teresa Sadras, Chung H. Kok, Eva Nievergall, Kelly Quek, Phuong Dang, Barbara McClure, Nicola Venn, Sarah Moore, Jeffrey Suttle, Tamara Law, Anthea Ng, Walter Muskovic, Murray D. Norris, Tamas Revesz, Michael Osborn, Andrew S. Moore, Ram Suppiah, Chris Fraser, Frank Alvaro, Timothy P. Hughes, Charles G. Mullighan, Glenn M. Marshall, Luciano Dalla Pozza, David T. Yeung, Rosemary Sutton, and Deborah L. White
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Published
- 2017
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12. Targeting Oncogenic Signaling in Mutant FLT3 Acute Myeloid Leukemia: The Path to Least Resistance
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Dilana Staudt, Heather C. Murray, Tabitha McLachlan, Frank Alvaro, Anoop K. Enjeti, Nicole M. Verrills, and Matthew D. Dun
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acute myeloid leukemia ,FLT3 ,tyrosine kinase inhibitors ,resistance ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
The identification of recurrent driver mutations in genes encoding tyrosine kinases has resulted in the development of molecularly-targeted treatment strategies designed to improve outcomes for patients diagnosed with acute myeloid leukemia (AML). The receptor tyrosine kinase FLT3 is the most commonly mutated gene in AML, with internal tandem duplications within the juxtamembrane domain (FLT3-ITD) or missense mutations in the tyrosine kinase domain (FLT3-TKD) present in 30–35% of AML patients at diagnosis. An established driver mutation and marker of poor prognosis, the FLT3 tyrosine kinase has emerged as an attractive therapeutic target, and thus, encouraged the development of FLT3 tyrosine kinase inhibitors (TKIs). However, the therapeutic benefit of FLT3 inhibition, particularly as a monotherapy, frequently results in the development of treatment resistance and disease relapse. Commonly, FLT3 inhibitor resistance occurs by the emergence of secondary lesions in the FLT3 gene, particularly in the second tyrosine kinase domain (TKD) at residue Asp835 (D835) to form a ‘dual mutation’ (ITD-D835). Individual FLT3-ITD and FLT3-TKD mutations influence independent signaling cascades; however, little is known about which divergent signaling pathways are controlled by each of the FLT3 specific mutations, particularly in the context of patients harboring dual ITD-D835 mutations. This review provides a comprehensive analysis of the known discrete and cooperative signaling pathways deregulated by each of the FLT3 specific mutations, as well as the therapeutic approaches that hold the most promise of more durable and personalized therapeutic approaches to improve treatments of FLT3 mutant AML.
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- 2018
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13. Molecular pathogenesis of EBV susceptibility in XLP as revealed by analysis of female carriers with heterozygous expression of SAP.
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Umaimainthan Palendira, Carol Low, Anna Chan, Andrew D Hislop, Edwin Ho, Tri Giang Phan, Elissa Deenick, Matthew C Cook, D Sean Riminton, Sharon Choo, Richard Loh, Frank Alvaro, Claire Booth, H Bobby Gaspar, Alessandro Moretta, Rajiv Khanna, Alan B Rickinson, and Stuart G Tangye
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Biology (General) ,QH301-705.5 - Abstract
X-linked lymphoproliferative disease (XLP) is a primary immunodeficiency caused by mutations in SH2D1A which encodes SAP. SAP functions in signalling pathways elicited by the SLAM family of leukocyte receptors. A defining feature of XLP is exquisite sensitivity to infection with EBV, a B-lymphotropic virus, but not other viruses. Although previous studies have identified defects in lymphocytes from XLP patients, the unique role of SAP in controlling EBV infection remains unresolved. We describe a novel approach to this question using female XLP carriers who, due to random X-inactivation, contain both SAP(+) and SAP(-) cells. This represents the human equivalent of a mixed bone marrow chimera in mice. While memory CD8(+) T cells specific for CMV and influenza were distributed across SAP(+) and SAP(-) populations, EBV-specific cells were exclusively SAP(+). The preferential recruitment of SAP(+) cells by EBV reflected the tropism of EBV for B cells, and the requirement for SAP expression in CD8(+) T cells for them to respond to Ag-presentation by B cells, but not other cell types. The inability of SAP(-) clones to respond to Ag-presenting B cells was overcome by blocking the SLAM receptors NTB-A and 2B4, while ectopic expression of NTB-A on fibroblasts inhibited cytotoxicity of SAP(-) CD8(+) T cells, thereby demonstrating that SLAM receptors acquire inhibitory function in the absence of SAP. The innovative XLP carrier model allowed us to unravel the mechanisms underlying the unique susceptibility of XLP patients to EBV infection in the absence of a relevant animal model. We found that this reflected the nature of the Ag-presenting cell, rather than EBV itself. Our data also identified a pathological signalling pathway that could be targeted to treat patients with severe EBV infection. This system may allow the study of other human diseases where heterozygous gene expression from random X-chromosome inactivation can be exploited.
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- 2011
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14. Large-scale linear regression: Development of high-performance routines
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Frank, Alvaro, Fabregat-Traver, Diego, and Bientinesi, Paolo
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Computer Science - Computational Engineering, Finance, and Science ,Computer Science - Mathematical Software - Abstract
In statistics, series of ordinary least squares problems (OLS) are used to study the linear correlation among sets of variables of interest; in many studies, the number of such variables is at least in the millions, and the corresponding datasets occupy terabytes of disk space. As the availability of large-scale datasets increases regularly, so does the challenge in dealing with them. Indeed, traditional solvers---which rely on the use of black-box" routines optimized for one single OLS---are highly inefficient and fail to provide a viable solution for big-data analyses. As a case study, in this paper we consider a linear regression consisting of two-dimensional grids of related OLS problems that arise in the context of genome-wide association analyses, and give a careful walkthrough for the development of {\sc ols-grid}, a high-performance routine for shared-memory architectures; analogous steps are relevant for tailoring OLS solvers to other applications. In particular, we first illustrate the design of efficient algorithms that exploit the structure of the OLS problems and eliminate redundant computations; then, we show how to effectively deal with datasets that do not fit in main memory; finally, we discuss how to cast the computation in terms of efficient kernels and how to achieve scalability. Importantly, each design decision along the way is justified by simple performance models. {\sc ols-grid} enables the solution of $10^{11}$ correlated OLS problems operating on terabytes of data in a matter of hours.
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- 2015
15. ONC201 in Combination with Paxalisib for the Treatment of H3K27-Altered Diffuse Midline Glioma
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Evangeline R. Jackson, Ryan J. Duchatel, Dilana E. Staudt, Mika L. Persson, Abdul Mannan, Sridevi Yadavilli, Sarah Parackal, Shaye Game, Wai Chin Chong, W. Samantha N. Jayasekara, Marion Le Grand, Padraic S. Kearney, Alicia M. Douglas, Izac J. Findlay, Zacary P. Germon, Holly P. McEwen, Tyrone S. Beitaki, Adjanie Patabendige, David A. Skerrett-Byrne, Brett Nixon, Nathan D. Smith, Bryan Day, Neevika Manoharan, Sumanth Nagabushan, Jordan R. Hansford, Dinisha Govender, Geoff B. McCowage, Ron Firestein, Meegan Howlett, Raelene Endersby, Nicholas G. Gottardo, Frank Alvaro, Sebastian M. Waszak, Martin R. Larsen, Yolanda Colino-Sanguino, Fatima Valdes-Mora, Andria Rakotomalala, Samuel Meignan, Eddy Pasquier, Nicolas André, Esther Hulleman, David D. Eisenstat, Nicholas A. Vitanza, Javad Nazarian, Carl Koschmann, Sabine Mueller, Jason E. Cain, and Matthew D. Dun
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Cancer Research ,Oncology - Abstract
Diffuse midline gliomas (DMG), including diffuse intrinsic pontine gliomas (DIPG), are the most lethal of childhood cancers. Palliative radiotherapy is the only established treatment, with median patient survival of 9 to 11 months. ONC201 is a DRD2 antagonist and ClpP agonist that has shown preclinical and emerging clinical efficacy in DMG. However, further work is needed to identify the mechanisms of response of DIPGs to ONC201 treatment and to determine whether recurring genomic features influence response. Using a systems-biological approach, we showed that ONC201 elicits potent agonism of the mitochondrial protease ClpP to drive proteolysis of electron transport chain and tricarboxylic acid cycle proteins. DIPGs harboring PIK3CA mutations showed increased sensitivity to ONC201, whereas those harboring TP53 mutations were more resistant. Metabolic adaptation and reduced sensitivity to ONC201 was promoted by redox-activated PI3K/Akt signaling, which could be counteracted using the brain penetrant PI3K/Akt inhibitor, paxalisib. Together, these discoveries coupled with the powerful anti-DIPG/DMG pharmacokinetic and pharmacodynamic properties of ONC201 and paxalisib have provided the rationale for the ongoing DIPG/DMG phase II combination clinical trial NCT05009992. Significance: PI3K/Akt signaling promotes metabolic adaptation to ONC201-mediated disruption of mitochondrial energy homeostasis in diffuse intrinsic pontine glioma, highlighting the utility of a combination treatment strategy using ONC201 and the PI3K/Akt inhibitor paxalisib.
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- 2023
16. Large-scale linear regression: Development of high-performance routines
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Frank, Alvaro, Fabregat-Traver, Diego, and Bientinesi, Paolo
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- 2016
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17. Supplementary Data from ONC201 in Combination with Paxalisib for the Treatment of H3K27-Altered Diffuse Midline Glioma
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Matthew D. Dun, Jason E. Cain, Sabine Mueller, Carl Koschmann, Javad Nazarian, Nicholas A. Vitanza, David D. Eisenstat, Esther Hulleman, Nicolas André, Eddy Pasquier, Samuel Meignan, Andria Rakotomalala, Fatima Valdes-Mora, Yolanda Colino-Sanguino, Martin R. Larsen, Sebastian M. Waszak, Frank Alvaro, Nicholas G. Gottardo, Raelene Endersby, Meegan Howlett, Ron Firestein, Geoff B. McCowage, Dinisha Govender, Jordan R. Hansford, Sumanth Nagabushan, Neevika Manoharan, Bryan Day, Nathan D. Smith, Brett Nixon, David A. Skerrett-Byrne, Adjanie Patabendige, Tyrone S. Beitaki, Holly P. McEwen, Zacary P. Germon, Izac J. Findlay, Alicia M. Douglas, Padraic S. Kearney, Marion Le Grand, W. Samantha N. Jayasekara, Wai Chin Chong, Shaye Game, Sarah Parackal, Sridevi Yadavilli, Abdul Mannan, Mika L. Persson, Dilana E. Staudt, Ryan J. Duchatel, and Evangeline R. Jackson
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All Supplementary Figures and their captions.
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- 2023
18. Data from ONC201 in Combination with Paxalisib for the Treatment of H3K27-Altered Diffuse Midline Glioma
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Matthew D. Dun, Jason E. Cain, Sabine Mueller, Carl Koschmann, Javad Nazarian, Nicholas A. Vitanza, David D. Eisenstat, Esther Hulleman, Nicolas André, Eddy Pasquier, Samuel Meignan, Andria Rakotomalala, Fatima Valdes-Mora, Yolanda Colino-Sanguino, Martin R. Larsen, Sebastian M. Waszak, Frank Alvaro, Nicholas G. Gottardo, Raelene Endersby, Meegan Howlett, Ron Firestein, Geoff B. McCowage, Dinisha Govender, Jordan R. Hansford, Sumanth Nagabushan, Neevika Manoharan, Bryan Day, Nathan D. Smith, Brett Nixon, David A. Skerrett-Byrne, Adjanie Patabendige, Tyrone S. Beitaki, Holly P. McEwen, Zacary P. Germon, Izac J. Findlay, Alicia M. Douglas, Padraic S. Kearney, Marion Le Grand, W. Samantha N. Jayasekara, Wai Chin Chong, Shaye Game, Sarah Parackal, Sridevi Yadavilli, Abdul Mannan, Mika L. Persson, Dilana E. Staudt, Ryan J. Duchatel, and Evangeline R. Jackson
- Abstract
Diffuse midline gliomas (DMG), including diffuse intrinsic pontine gliomas (DIPG), are the most lethal of childhood cancers. Palliative radiotherapy is the only established treatment, with median patient survival of 9 to 11 months. ONC201 is a DRD2 antagonist and ClpP agonist that has shown preclinical and emerging clinical efficacy in DMG. However, further work is needed to identify the mechanisms of response of DIPGs to ONC201 treatment and to determine whether recurring genomic features influence response. Using a systems-biological approach, we showed that ONC201 elicits potent agonism of the mitochondrial protease ClpP to drive proteolysis of electron transport chain and tricarboxylic acid cycle proteins. DIPGs harboring PIK3CA mutations showed increased sensitivity to ONC201, whereas those harboring TP53 mutations were more resistant. Metabolic adaptation and reduced sensitivity to ONC201 was promoted by redox-activated PI3K/Akt signaling, which could be counteracted using the brain penetrant PI3K/Akt inhibitor, paxalisib. Together, these discoveries coupled with the powerful anti-DIPG/DMG pharmacokinetic and pharmacodynamic properties of ONC201 and paxalisib have provided the rationale for the ongoing DIPG/DMG phase II combination clinical trial NCT05009992.Significance:PI3K/Akt signaling promotes metabolic adaptation to ONC201-mediated disruption of mitochondrial energy homeostasis in diffuse intrinsic pontine glioma, highlighting the utility of a combination treatment strategy using ONC201 and the PI3K/Akt inhibitor paxalisib.
- Published
- 2023
19. PI3K/mTOR is a therapeutically targetable genetic dependency in diffuse intrinsic pontine glioma
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Ryan J. Duchatel, Evangeline R. Jackson, Sarah G. Parackal, Claire Sun, Paul Daniel, Abdul Mannan, Izac J. Findlay, Dilana Staudt, Zacary P. Germon, Sandra Laternser, Dylan Kiltschewskij, Padraic S. Kearney, M. Fairuz, B. Jamaluddin, Alicia M. Douglas, Tyrone Beitaki, Mika Persson, Elizabeth E. Manning, Heather C. Murray, Nicole M. Verrills, David A. Skerrett-Byrne, Brett Nixon, Susan Hua, Valdes-Mora Fatima, Maria Tsoli, David S. Ziegler, Murray J. Cairns, Eric Raabe, Nicholas A. Vitanza, Carl Koschmann, Frank Alvaro, Christopher V. Dayas, Christopher L. Tinkle, David D. Eisenstat, Ron Firestein, Sabine Mueller, Javad Nazarian, Jason E. Cain, and Matthew D. Dun
- Abstract
Diffuse midline glioma (DMG), including tumors diagnosed in the brainstem (diffuse intrinsic pontine glioma – DIPG), are uniformly fatal brain tumors that lack effective pharmacological treatment. Analysis of pooled CRISPR-Cas9 loss-of-function gene deletion screen datasets, identifiedPIK3CAandMTORas targetable molecular dependencies across DIPG patient derived models, highlighting the therapeutic potential of the blood-brain barrier penetrant PI3K/Akt/mTOR inhibitor paxalisib. At the human equivalent maximum tolerated dose, mice treated with paxalisib experienced systemic feedback resulting in increased blood glucose and insulin levels, commensurate with DIPG patients in Phase 1b clinical trials who experienced hyperglycemia/hyperinsulinemia. To exploit genetic dependences, but maintain compliance and benefit, we optimized a paxalisib treatment regimen that employed reduced dosing more frequently, in combination with the anti-hyperglycemic drug, metformin. Combining optimized dosing with metformin restored glucose homeostasis and decreased phosphorylation of the insulin receptorin vivo, a common mechanism of PI3K-inhibitor resistance, extending the survival of DIPG xenograft models. RNA sequencing and phosphoproteomic profiling of DIPG models treated with paxalisib identified increased calcium-activated PKC signaling. Using the brain penetrant PKC inhibitor, enzastaurin in combination with paxalisib, we synergistically extended the survival of orthotopic xenograft models, benefits further promoted by metformin; thus, identifying a clinically relevant DIPG combinatorial approach.Brief SummaryDiffuse intrinsic pontine glioma is a lethal childhood brain tumor. Here we identifyPIK3CAas a genetic dependency targeted by the brain penetrant pan-PI3K-inhibitor paxalisib.
- Published
- 2023
20. Plan de gestión de los procesos gastronómicos para los restaurantes de Chiclayo
- Author
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Yandir Paredes Fernandez, Frank Alvaro Saavedra Melgarejo, Mario Uldarico Vargas Salazar, David Víctor Enrique Soza Carrillo, and Carlos Omar Rivadeneyra Céspedes
- Abstract
La presente investigación tiene como finalidad diseñar un plan de gestión de los procesos gastronómicos para los restaurantes en la ciudad de Chiclayo, centrado en un enfoque de comercialización, redistribución y correcto procesamiento de alimentos, generando así una seguridad alimentaria para los consumidores de estos servicios gastronómicos y así poder prevenir futras enfermedades ocasionados por alimentos insalubres. El modelo teórico se fundamenta en la teoría sobre un plan estratégico sobre la gastronomía y la alimentación de la población de Euskadi, destacando por su claro carácter social y una curiosa combinación entre la tradición más inflexible y su espíritu transformador, siendo una investigación, cualitativa, critica y proyectiva.
- Published
- 2021
21. A novel transcriptional signature identifies T-cell infiltration in high-risk paediatric cancer
- Author
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Chelsea Mayoh, Andrew J Gifford, Rachael Terry, Loretta MS Lau, Marie Wong, Padmashree Rao, Tyler Shai-Hee, Federica Saletta, Dong-Anh Khuong-Quang, Vicky Qin, Marion Mateos, Deborah Meyran, Katherine E Miller, Aysen Yuksel, Emily VA Mould, Rachael Bowen-James, Dinisha Govender, Akanksha Senapati, Nataliya Zhukova, Natacha Omer, Hetal Dholaria, Frank Alvaro, Heather Tapp, Yonatan Diamond, Luciano Dalla Pozza, Andrew S Moore, Wayne Nicholls, Nicholas G Gottardo, Geoffrey McCowage, Jordan R Hansford, Seong-Lin Khaw, Paul J Wood, Daniel Catchpoole, Catherine E Cottrell, Elaine R Mardis, Glenn M Marshall, Vanessa Tyrrell, Michelle Haber, David S Ziegler, Orazio Vittorio, Joseph A Trapani, Mark J Cowley, Paul J Neeson, and Paul G Ekert
- Subjects
Genetics ,Molecular Medicine ,Molecular Biology ,Genetics (clinical) - Abstract
Background Molecular profiling of the tumour immune microenvironment (TIME) has enabled the rational choice of immunotherapies in some adult cancers. In contrast, the TIME of paediatric cancers is relatively unexplored. We speculated that a more refined appreciation of the TIME in childhood cancers, rather than a reliance on commonly used biomarkers such as tumour mutation burden (TMB), neoantigen load and PD-L1 expression, is an essential prerequisite for improved immunotherapies in childhood solid cancers. Methods We combined immunohistochemistry (IHC) with RNA sequencing and whole-genome sequencing across a diverse spectrum of high-risk paediatric cancers to develop an alternative, expression-based signature associated with CD8+ T-cell infiltration of the TIME. Furthermore, we explored transcriptional features of immune archetypes and T-cell receptor sequencing diversity, assessed the relationship between CD8+ and CD4+ abundance by IHC and deconvolution predictions and assessed the common adult biomarkers such as neoantigen load and TMB. Results A novel 15-gene immune signature, Immune Paediatric Signature Score (IPASS), was identified. Using this signature, we estimate up to 31% of high-risk cancers harbour infiltrating T-cells. In addition, we showed that PD-L1 protein expression is poorly correlated with PD-L1 RNA expression and TMB and neoantigen load are not predictive of T-cell infiltration in paediatrics. Furthermore, deconvolution algorithms are only weakly correlated with IHC measurements of T-cells. Conclusions Our data provides new insights into the variable immune-suppressive mechanisms dampening responses in paediatric solid cancers. Effective immune-based interventions in high-risk paediatric cancer will require individualised analysis of the TIME.
- Published
- 2022
22. Routine screening of emergency admissions at risk of chronic hepatitis (SEARCH) identifies and links hepatitis B cases to care
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Rachael Jacob, David S. Prince, Joseph L. Pipicella, Angela Nguyen, Melissa Bagatella, Frank Alvaro, Michael Maley, Hong Foo, Paul Middleton, Tahrima Kayes, Julia DiGirolamo, Scott A. Davison, and Miriam T. Levy
- Subjects
Hepatology - Abstract
Significant barriers exist with hepatitis B (HBV) case detection and effective linkage to care (LTC). The emergency department (ED) is a unique healthcare interaction where hepatitis screening and LTC could be achieved. We examined the efficacy and utility of automated ED HBV screening for Overseas Born (OB) patients.A novel-automated hepatitis screening service "SEARCH" (Screening Emergency Admissions at Risk of Chronic Hepatitis) was piloted at a metropolitan hospital. A retrospective and comparative analysis of hepatitis testing during the SEARCH pilot compared to a period of routine testing was conducted.During the SEARCH pilot, 4778 OB patients were tested for HBV (86% of eligible patient presentations), compared with 1.9% of eligible patients during a control period of clinician-initiated testing. SEARCH detected 108 (2.3%) hepatitis B surface antigen positive patients including 20 (19%) in whom the diagnosis was new. Among 88 patients with known HBV, 57% were receiving medical care, 33% had become lost to follow-up and 10% had never received HBV care. Overall, 30/88 (34%) patients with known HBV were receiving complete guideline-based care prior to re-engagement via SEARCH. Following SEARCH, LTC was successful achieved in 48/58 (83%) unlinked patients and 19 patients were commenced on anti-viral therapy. New diagnoses of cirrhosis and hepatocellular carcinoma were made in five and one patient(s) respectively.Automated ED screening of OB patients is effective in HBV diagnosis, re-diagnosis and LTC. Prior to SEARCH, the majority of patients were not receiving guideline-based care.
- Published
- 2022
23. CSIG-10. PHARMACO-PHOSPHO-PROTEO-GENOMICS OF PEDIATRIC HIGH-GRADE GLIOMAS – A PILOT STUDY
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Izac Findlay, Dilana Staudt, Padraic Kearney, Holly McEwen, Ryan Duchatel, Evangeline Jackson, Tyrone Beitaki, Nathan Smith, Nicholas Vitanza, Ron Firestein, Jason Cain, Sabine Mueller, Eddy Pasquier, Carl Koschmann, Esther Hulleman, Javad Nazarian, Mitchell Hansen, Frank Alvaro, Melissa Davis, Sebastian Waszak, and Matthew Dun
- Subjects
Cancer Research ,Oncology ,Neurology (clinical) - Abstract
Pediatric high-grade gliomas (pHGG) are the leading cause of cancer-related death in children and young adults. Current treatment strategies are centered on maximal safe resection, followed by radiotherapy, and interrogation of the tumor genome to identify targetable mutations. Unfortunately, we are yet to see an improvement in patient outcomes with a median overall survival remaining 15-months. To improve patient outcomes, we have begun to characterize the genome, proteome, and phosphoproteome of 168 pHGGs to better understand the functional consequences of their somatic alterations as well as their influence of the tumor microenvironment. Employing a novel ‘pharmaco-phospho-proteo-genomics’ pipeline, we have analyzed pHGG cell lines and tumor tissue specimens at diagnosis, relapse (partial resection congenital glioblastoma), and autopsy. Genomic profiling was conducted utilizing the 523-gene TruSight Oncology 500 (TSO500) next-generation sequencing panel. Simultaneously, tumor proteomes and phosphoproteomes were characterized using our high-throughput global phospho-proteomic profiling technique termed pHASED (phospho Heavy-labelled-spiketide FAIMS StEpped-CV DDA). High-fidelity tumor proteomic and phospho-proteomic data were identified and compared to normal control brain samples. Across 40 pHGG samples, we identified 290 unique somatic alterations with a high predicted impact severity and quantified 7,345 unique proteins and 3,327 phosphoproteins. Gene panel sequencing of a critical pediatric glioblastoma patient sample identified 18 somatic alterations, eight of which had a high predicted impact severity, however, none were targetable. Conversely, phosphoproteomic profiling identified enriched MAPK and PRKCB signaling, relative to normal brain tissues, thereby encouraging the use of the TGA/FDA approved therapies trametinib (MAPKs) and enzastaurin (PRKCB). In vitro investigations confirmed the utility of these treatment approaches and in vivo patient derives xenograft mouse models for this sample are under investigation. This pilot study provides critical data to support the benefit of interrogating the genome, proteome, and phospho-proteome of these devastating tumours to aid in the selection/development of effective treatment strategies.
- Published
- 2022
24. The intrinsic and microenvironmental features of diffuse midline glioma: Implications for the development of effective immunotherapeutic treatment strategies
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Mika L Persson, Alicia M Douglas, Frank Alvaro, Pouya Faridi, Martin R Larsen, Marta M Alonso, Nicholas A Vitanza, and Matthew D Dun
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Cancer Research ,Treatment Outcome ,Oncology ,Tumor Microenvironment ,Brain Stem Neoplasms ,Humans ,Neurology (clinical) ,Glioma ,Immunotherapy ,Child ,Immunotherapy, Adoptive - Abstract
Diffuse midline glioma (DMG), including those of the brainstem (diffuse intrinsic pontine glioma), are pediatric tumors of the central nervous system (CNS). Recognized as the most lethal of all childhood cancers, palliative radiotherapy remains the only proven treatment option, however, even for those that respond, survival is only temporarily extended. DMG harbor an immunologically “cold” tumor microenvironment (TME) with few infiltrating immune cells. The mechanisms underpinning the cold TME are not well understood. Low expression levels of immune checkpoint proteins, including PD-1, PD-L1, and CTLA-4, are recurring features of DMG and likely contribute to the lack of response to immune checkpoint inhibitors (ICIs). The unique epigenetic signatures (including stem cell-like methylation patterns), a low tumor mutational burden, and recurring somatic mutations (H3K27M, TP53, ACVR1, MYC, and PIK3CA), possibly play a role in the reduced efficacy of traditional immunotherapies. Therefore, to circumvent the lack of efficacy thus far seen for the use of ICIs, adoptive cell transfer (including chimeric antigen receptor T cells) and the use of oncolytic viruses, are currently being evaluated for the treatment of DMG. It remains an absolute imperative that we improve our understanding of DMG’s intrinsic and TME features if patients are to realize the potential benefits offered by these sophisticated treatments. Herein, we summarize the limitations of immunotherapeutic approaches, highlight the emerging safety and clinical efficacy shown for sophisticated cell-based therapies, as well as the evolving knowledge underpinning the DMG-immune axis, to guide the development of immunotherapies that we hope will improve outcomes.
- Published
- 2022
25. Blockade of redox second messengers inhibits JAK/STAT and MEK/ERK signaling sensitizing FLT3-mutant acute myeloid leukemia to targeted therapies
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Zacary P. Germon, Jonathan R. Sillar, Abdul Mannan, Ryan J. Duchatel, Dilana Staudt, Heather C. Murray, Izac J. Findlay, Evangeline R. Jackson, Holly P. McEwen, Alicia M. Douglas, Tabitha McLachlan, John E. Schjenken, David A. Skerrett-Bryne, Honggang Huang, Marcella N. Melo-Braga, Maximilian W. Plank, Frank Alvaro, Janis Chamberlain, Geoff De Iuliis, R. John Aitken, Brett Nixon, Andrew H. Wei, Anoop K. Enjeti, Richard B. Lock, Martin R. Larsen, Heather Lee, Charles E. de Bock, Nicole M. Verrills, and Matthew D. Dun
- Subjects
hemic and lymphatic diseases ,embryonic structures - Abstract
FLT3-mutations are diagnosed in 25-30% of patients with acute myeloid leukemia (AML) and are associated with a poor prognosis. AML is associated with the overproduction of reactive oxygen species (ROS), which drives genomic instability through the oxidation of DNA bases, promoting clonal evolution, treatment resistance and poor outcomes. ROS are also important second messengers, triggering cysteine oxidation in redox sensitive signaling proteins, however, the specific pathways influenced by ROS in AML remain enigmatic. Here we have surveyed the posttranslational architecture of primary AML patient samples and assessed oncogenic second messenger signaling. Signaling proteins responsible for growth and proliferation were differentially oxidized and phosphorylated between patient subtypes either harboring recuring mutation in FLT3 compared to patients expressing the wildtype-FLT3 receptor, particularly those mapping to the Src family kinases (SFKs). Patients harboring FLT3-mutations also showed increased oxidative posttranslational modifications in the GTPase Rac activated-NADPH oxidase-2 (NOX2) complex to drive autocratic ROS production. Pharmacological and molecular inhibition of NOX2 was cytotoxic specifically to FLT3-mutant AMLs, and reduced phosphorylation of the critical hematopoietic transcription factor STAT5 and MAPK/ERK to synergistically increase sensitivity to FLT3-inhibitors. NOX2 inhibition also reduced phosphorylation and cysteine oxidation of FLT3 in patient derived xenograft mouse models in vivo, highlighting an important link between oxidative stress and oncogenic signaling. Together, these data raise the promising possibility of targeting NOX2 in combination with FLT3-inhibitors to improve treatment of FLT3-mutant AML.One Sentence SummaryFLT3-precision therapies have entered the clinic for AML however, their durability is limited. Here we identify the Rac-NOX2 complex as the major driver of redox second messenger signaling in FLT3-mutant AML. Molecular and pharmacological inhibition of NOX2 decreased FLT3, STAT5 and MEK/ERK signaling to delay leukemia progression, and synergistically combined with FLT3 inhibitors.
- Published
- 2022
26. Rapid‐Fire Presentation Abstracts
- Author
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Honggang Huang, Janis Chamberlain, Andrew H. Wei, Martin R. Larsen, Ryan J. Duchatel, Jonathan R. Sillar, Nicole M. Verrills, Heather C. Murray, Matthew D. Dun, Frank Alvaro, Zacary P. Germon, Kristy McCarthy, Abdul Mannan, Alicia Douglas, and Anoop K Enjeti
- Subjects
chemistry.chemical_classification ,Reactive oxygen species ,Treatment targets ,Oncology ,chemistry ,business.industry ,Oncogenic signaling ,Cancer research ,Myeloid leukemia ,Medicine ,General Medicine ,business ,Flt3 itd - Published
- 2020
27. Screening Emergency Admissions at Risk of Chronic Hepatitis C (SEARCH) to diagnose or ‘re‐diagnose’ infections is effective in Australia
- Author
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Frank Alvaro, G.J. Dore, David Prince, Miriam T. Levy, Geoff McCaughan, Hong Foo, Melissa A Fraser, Scott Davison, Paul M. Middleton, Michael Maley, and Joseph Louis Pipicella
- Subjects
medicine.medical_specialty ,World health ,03 medical and health sciences ,0302 clinical medicine ,Chronic hepatitis ,Informed consent ,Virology ,medicine ,Humans ,Mass Screening ,030212 general & internal medicine ,Retrospective Studies ,Hepatology ,business.industry ,Emergency visit ,Australia ,Hepatitis C ,Emergency department ,Hepatitis C, Chronic ,medicine.disease ,HCV Antibody ,Infectious Diseases ,Emergency medicine ,030211 gastroenterology & hepatology ,business ,Viral hepatitis - Abstract
The World Health Organization has set ambitious viral hepatitis elimination targets; however, difficulties in identifying and engaging patients remain. The emergency visit is an opportunity for enhanced linkage to care (LTC). We assessed the effectiveness of an automated Emergency Department (ED) screening service in identifying patients with hepatitis C (HCV) and achieving LTC. A retrospective evaluation was undertaken, analysing the first 5000 patients screened through an automatic Australian service termed 'Screening Emergency Admissions at Risk of Chronic Hepatitis' (SEARCH). Screening was performed for those recommended in the Australian national testing policy, specifically overseas born (OB) and Aboriginal or Torres Strait Islanders (ATSI). Healthcare worker education, patient information materials and opt-out informed consent were used to test sera already collected for biochemistry assays. 5000 of 5801 (86.2%) consecutive eligible patients were screened (OB: 4778, ATSI: 222) from 14 093 ED presentations. HCV antibody was positive in 181 patients (3.6%); 51 (1.0%) were HCV RNA positive. Of 51 HCV RNA-positive patients, 12 were new diagnoses, 32 were 're-diagnoses' (aware but lost to follow-up [LTFU]), and 7 were previously known but treatment contraindicated. LTC was successful in 38 viraemic patients (7 deceased, 4 LTFU, 1 treatment ineligible and 1 declined). Of RNA-negative patients, 75 were previously treated and 49 had presumed spontaneous clearance. Opt-out consent was acceptable to all patients and staff involved. ED screening can lead to additional diagnosing and 're-diagnosing' of HCV, with high rates of LTC. Opt-out consent and automation removed major obstacles to testing.
- Published
- 2020
28. High rate of durable remissions post autologous stem cell transplantation for core-binding factor acute myeloid leukaemia in second complete remission
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Humphrey Pullon, Andrew Spencer, Julie Crawford, Andrew Grigg, Matthew J Rees, Hock Choong Lai, Frank Alvaro, Sam Milliken, Duncan Purtill, and Peter Browett
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High rate ,Transplantation ,business.industry ,Core Binding Factors ,Remission Induction ,Hematopoietic Stem Cell Transplantation ,Complete remission ,Hematology ,Core binding factor acute myeloid leukaemia ,Transplantation, Autologous ,Leukemia, Myeloid, Acute ,Autologous stem-cell transplantation ,Cancer research ,Humans ,Medicine ,business ,Stem Cell Transplantation - Published
- 2020
29. Shwachman–Bodian–Diamond syndrome (SBDS) protein is a direct inhibitor of protein phosphatase 2A (PP2A) activity and overexpressed in acute myeloid leukaemia
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Hubert Hondermarck, Frank Alvaro, Zacary P. Germon, Heather C. Murray, Dominik Beck, Abdul Mannan, Charles E. de Bock, Stephen M. Butler, David A. Skerrett-Byrne, Hayley Flanagan, Matthew D. Dun, Patrick Connerty, Geoff De Iuliis, Jonathan C. Morris, Mengna Chi, Juhura G. Almazi, Hamish D. Toop, Brett Nixon, Ryan J. Duchatel, Sam Faulkner, Janis Chamberlain, Anoop K Enjeti, Callum J Rigby, Richard G. S. Kahl, Jonathan R. Sillar, and Nicole M. Verrills
- Subjects
Cancer Research ,Letter ,Myeloid ,Apoptosis ,Acute myeloid leukaemia ,medicine ,Humans ,Protein Phosphatase 2 ,Bone Marrow Diseases ,Shwachman–Diamond syndrome ,business.industry ,Proteins ,Oncogenes ,Hematology ,Protein phosphatase 2 ,SBDS ,medicine.disease ,Molecular biology ,Shwachman-Diamond Syndrome ,Leukemia, Myeloid, Acute ,Leukemia ,medicine.anatomical_structure ,Oncology ,Proteins metabolism ,Myeloid leukaemia ,business ,Signal Transduction - Published
- 2020
30. COVID-19 vaccination in children and adolescents aged 5 years and older undergoing treatment for cancer and non-malignant haematological conditions: Australian and New Zealand Children's Haematology/Oncology Group consensus statement
- Author
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Eliska Furlong, Rishi S Kotecha, Rachel Conyers, Tracey A O'Brien, Jordan R Hansford, Leanne Super, Peter Downie, David D Eisenstat, Gabrielle Haeusler, Brendan McMullan, Marianne B Phillips, Bhavna Padhye, Luciano Dalla‐Pozza, Frank Alvaro, Christopher J Fraser, Wayne Nicholls, Julia E Clark, Matthew O'Connor, Benjamin R Saxon, Heather Tapp, John Heath, Sarah E Hunter, Karen Tsui, Mark Winstanley, Amanda Lyver, Emma J Best, Ushma Wadia, Daniel Yeoh, Christopher C Blyth, and Nicholas G Gottardo
- Subjects
COVID-19 Vaccines ,Adolescent ,Child, Preschool ,Neoplasms ,Vaccination ,Australia ,COVID-19 ,Humans ,General Medicine ,Hematology ,Child ,New Zealand - Abstract
The Australian Technical Advisory Group on Immunisation and New Zealand Ministry of Health recommend all children aged ≥ 5 years receive either of the two mRNA COVID-19 vaccines: Comirnaty (Pfizer), available in both Australia and New Zealand, or Spikevax (Moderna), available in Australia only. Both vaccines are efficacious and safe in the general population, including children. Children and adolescents undergoing treatment for cancer and immunosuppressive therapy for non-malignant haematological conditions are particularly vulnerable, with an increased risk of severe or fatal COVID-19. There remains a paucity of data regarding the immune response to COVID-19 vaccines in immunosuppressed paediatric populations, with data suggestive of reduced immunogenicity of the vaccine in immunocompromised adults.Considering the safety profile of mRNA COVID-19 vaccines and the increased risk of severe COVID-19 in immunocompromised children and adolescents, COVID-19 vaccination is strongly recommended for this at-risk population. We provide a number of recommendations regarding COVID-19 vaccination in this population where immunosuppressive, chemotherapeutic and/or targeted biological agents are used. These include the timing of vaccination in patients undergoing active treatment, management of specific situations where vaccination is contraindicated or recommended under special precautions, and additional vaccination recommendations for severely immunocompromised patients. Finally, we stress the importance of upcoming clinical trials to identify the safest and most efficacious vaccination regimen for this population.This consensus statement provides recommendations for COVID-19 vaccination in children and adolescents aged ≥ 5 years with cancer and immunocompromising non-malignant haematological conditions, based on evidence, national and international guidelines and expert opinion.The Australian and New Zealand Children's Haematology/Oncology Group.
- Published
- 2022
31. Reducing resource waste in HPC through co-allocation, custom checkpoints, and lower false failure prediction rates
- Author
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Frank, Alvaro
- Subjects
004 Informatik ,004 Data processing - Published
- 2022
- Full Text
- View/download PDF
32. DIPG-07. Preclinical and case study results underpinning the phase II clinical trial testing the combination of ONC201 and paxalisib for the treatment of patients with diffuse midline glioma (NCT05009992)
- Author
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Matthew D Dun, Evangeline R Jackson, Ryan J Duchatel, Mika L Persson, Abdul Mannan, Sridevi Yadavilli, Sarah Parackal, Shaye Game, Wai Chin Chong, Samantha Jayasekara, Marion Le Grand, Padraic S Kearney, Alicia M Douglas, Izac J Findlay, Dilana Staudt, Zacary P Germon, David A Skerrett-Byrne, Brett Nixon, Nathan D Smith, Esther Hulleman, Bryan Day, Geoff B McCowage, Frank Alvaro, Sebastian M Waszak, Martin R Larsen, Yolanda Colino-Sanguino, Fatima Valdes-Mora, Andria Rakotomalala, Samuel Meignan, Eddy Pasquier, Nicholas A Vitanza, Javad Nazarian, Carl Koschmann, Jason Cain, and Sabine Mueller
- Subjects
Cancer Research ,Oncology ,Neurology (clinical) - Abstract
Diffuse midline gliomas (DMG), including those of the brainstem (diffuse intrinsic pontine glioma - DIPG), are pediatric CNS tumors recognized as the most lethal of all children’s cancers. Palliative radiotherapy is the only approved treatment, with survival just 9-11–months post-diagnosis. ONC201 shows preclinical and emerging clinical efficacy in early-stage clinical trials, extending survival of DIPG patients by ~9-11–months compared to historic controls. However, patients invariably develop resistance, with some patients completely refractory to treatment. Using a multi-omics approach, including pharmacology, proteomics, genomics, epigenetics, in vitro and in vivo modeling, across ten international laboratories, we have uncovered the inherent mechanisms of resistance to ONC201. We find ONC201 elicits antagonism of the Dopamine receptor D2 (DRD2), whilst also causing mitochondrial degradation through potent agonism of the Mitochondrial protease CLPP, that drives proteolysis of the electron transport chain (ETC) protein Succinate dehydrogenase A (SDHA) and degradation of critical mitochondrial tricarboxylic acid (TCA) cycle regulator Isocitrate dehydrogenase 3B (IDH3B). Loss mitochondrial respiration increased hypoxia and reduced α-ketoglutarate, inhibiting lysine demethylation, increasing methylation of H3K4me3 and H3K27me3, thus altering the epigenome of primary DIPG cells. Loss of SDHA caused oxidation of succinate forming superoxide driving redox regulated PI3K/AKT signaling, counteracted using the PI3K/AKT inhibitor paxalisib. The combination of ONC201 and paxalisib synergically extended survival of two aggressive DIPG PDX models (SU-SIPG-VI vehicle=73 vs. combination=100-days, p=0.0027; SF8626 vehicle=36 vs. combination=43-days, p=0.0002). Compassionate access to this combination (n=2 patients; immediately post-RT and following re-RT) resulted in reductions in tumor volume and complete resolution of disease symptoms, extending overall survival (e.g., diagnosis patient MR axial scan=1554 mm2 , following eight months on the combination, current tumor volume=464 mm2 (
- Published
- 2022
33. Plan de gestión de los procesos gastronómicos para los restaurantes de Chiclayo.
- Author
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Paredes Fernandez, Yandir, primary, Saavedra Melgarejo, Frank Alvaro, additional, Vargas Salazar, Mario Uldarico, additional, Soza Carrillo, David Víctor Enrique, additional, and Rivadeneyra Céspedes, Carlos Omar, additional
- Published
- 2021
- Full Text
- View/download PDF
34. PATZ1 fusions define a novel molecularly distinct neuroepithelial tumor entity with a broad histological spectrum
- Author
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Elli Papaemmanuil, Bastiaan B. J. Tops, Torben Stamm Mikkelsen, Fanny Vandenbos, Christof M. Kramm, Nancy Bouvier, Katharina Filipski, Nagma Dalvi, Kristian W. Pajtler, Andrea Wittmann, Christine Haberler, Till Milde, Olaf Witt, Hildegard Dohmen, Martin Sill, George Jour, Matija Snuderl, Allison M. Martin, Torsten Pietsch, Antonis Kattamis, Nicholas G. Gottardo, Emmanuelle Uro-Coste, Philipp Sievers, Andreas von Deimling, Frank Alvaro, Simone Schmid, Damian Stichel, Jonas Ecker, Marcel Kool, Johannes Gojo, Lidija Kitanovski, Michal Zapotocky, Michael Delorenzo, Catherine Godfraind, Florian Selt, Alexander C Sommerkamp, Adam S. Levy, Pieter Wesseling, Evelina Miele, Lenka Krskova, Pengbo Beck, Matthias A. Karajannis, David Scheie, Jordan R. Hansford, Natalie Jäger, Karam T. Alhalabi, Andrey Korshunov, Felix Sahm, Mariëtte E.G. Kranendonk, David T.W. Jones, David Sumerauer, Chris Jones, Katja von Hoff, Heike Peterziel, Stefan M. Pfister, Dominik Sturm, Martin G. McCabe, Ina Oehme, Maria Filippidou, Claude Alain Maurage, Ingrid Øra, Till Acker, Pathology, CCA - Cancer biology and immunology, and CCA - Imaging and biomarkers
- Subjects
Male ,Pathology ,medicine.medical_specialty ,Oncogene Proteins, Fusion ,PATZ1 ,Kruppel-Like Transcription Factors ,Brain tumor ,Neuroepithelial ,Biology ,Malignancy ,Pathology and Forensic Medicine ,Fusion gene ,Cellular and Molecular Neuroscience ,Biomarkers, Tumor ,medicine ,Humans ,Oncogene Fusion ,Copy-number variation ,ddc:610 ,Child ,Kruppel-Like Transcription Factors/genetics ,Brain Neoplasms/genetics ,Pediatric ,Neoplasms, Neuroepithelial/genetics ,Repressor Proteins/genetics ,Original Paper ,Manchester Cancer Research Centre ,MN1 ,Brain Neoplasms ,ResearchInstitutes_Networks_Beacons/mcrc ,GATA2 ,Neurooncology ,medicine.disease ,Neoplasms, Neuroepithelial ,Repressor Proteins ,Neuroepithelial cell ,EWSR1 ,Child, Preschool ,Oncogene Proteins, Fusion/genetics ,Female ,Neurology (clinical) ,Biomarkers, Tumor/genetics ,Chromosome 22 ,Gene fusion - Abstract
Large-scale molecular profiling studies in recent years have shown that central nervous system (CNS) tumors display a much greater heterogeneity in terms of molecularly distinct entities, cellular origins and genetic drivers than anticipated from histological assessment. DNA methylation profiling has emerged as a useful tool for robust tumor classification, providing new insights into these heterogeneous molecular classes. This is particularly true for rare CNS tumors with a broad morphological spectrum, which are not possible to assign as separate entities based on histological similarity alone. Here, we describe a molecularly distinct subset of predominantly pediatric CNS neoplasms (n = 60) that harbor PATZ1 fusions. The original histological diagnoses of these tumors covered a wide spectrum of tumor types and malignancy grades. While the single most common diagnosis was glioblastoma (GBM), clinical data of the PATZ1-fused tumors showed a better prognosis than typical GBM, despite frequent relapses. RNA sequencing revealed recurrent MN1:PATZ1 or EWSR1:PATZ1 fusions related to (often extensive) copy number variations on chromosome 22, where PATZ1 and the two fusion partners are located. These fusions have individually been reported in a number of glial/glioneuronal tumors, as well as extracranial sarcomas. We show here that they are more common than previously acknowledged, and together define a biologically distinct CNS tumor type with high expression of neural development markers such as PAX2, GATA2 and IGF2. Drug screening performed on the MN1:PATZ1 fusion-bearing KS-1 brain tumor cell line revealed preliminary candidates for further study. In summary, PATZ1 fusions define a molecular class of histologically polyphenotypic neuroepithelial tumors, which show an intermediate prognosis under current treatment regimens.
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- 2021
35. Long‐term health‐related quality of life in young childhood cancer survivors and their parents
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Maria C. McCarthy, Frank Alvaro, Thomas Walwyn, Melissa Gabriel, Christina Signorelli, Jordana K. McLoone, Liane Lockwood, Claire E. Wakefield, Joanna E. Fardell, Michael Osborn, Richard De Abreu Lourenco, Jane Skeen, Ramon Tillemans, Antoinette Anazodo, and Richard J. Cohn
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Parents ,Gerontology ,media_common.quotation_subject ,Population ,Cancer Survivors ,Quality of life ,Neoplasms ,Surveys and Questionnaires ,Survivorship curve ,Humans ,Medicine ,Survivors ,Child ,education ,Depression (differential diagnoses) ,media_common ,Cancer survivor ,education.field_of_study ,business.industry ,Loneliness ,Hematology ,humanities ,Oncology ,Pediatrics, Perinatology and Child Health ,Quality of Life ,Anxiety ,Psychological resilience ,medicine.symptom ,business - Abstract
PURPOSE Few studies have investigated the health-related quality of life (HRQoL) of young childhood cancer survivors and their parents. This study describes parent and child cancer survivor HRQoL compared to population norms and identifies factors influencing child and parent HRQoL. METHODS We recruited parents of survivors who were currently 5 years postdiagnosis. Parents reported on their child's HRQoL (Kidscreen-10), and their own HRQoL (EQ-5D-5L). Parents rated their resilience and fear of cancer recurrence and listed their child's cancer-related late effects. RESULTS One hundred eighty-two parents of survivors (mean age = 12.4 years old and 9.7 years postdiagnosis) participated. Parent-reported child HRQoL was significantly lower than population norms (48.4 vs. 50.7, p
- Published
- 2021
36. EXTH-12. PRECLINICAL AND CASE STUDY EXAMINATION OF THE COMBINATION OF THE CLPP AGONIST ONC201 WITH THE PI3K/AKT INHIBITOR PAXALISIB FOR THE TREATMENT OF DIFFUSE MIDLINE GLIOMA
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Evangeline Jackson, Ryan Duchatel, Mika Persson, Abdul Mannan, Sridevi Yadavilli, Sarah Parackal, Shaye Game, Wai Chin Chong, Samantha Jayasekara, Marion Le Grand, Padraic Kearney, Alicia Douglas, Izac Findlay, Dilana Staudt, Zacary Germon, David Skerrett-Byrne, Brett Nixon, Nathan Smith, Esther Hulleman, Bryan Day, Geoffrey McCowage, Frank Alvaro, Sebastian Waszak, Martin Larsen, Yolanda Colino-Sanguino, Fatima Valdes-Mora, Andria Rakotomalala, Samuel Meignan, Eddy Pasquier, Nicholas Vitanza, Javad Nazarian, Carl Koschmann, Jason Cain, Sabine Mueller, and Matthew Dun
- Subjects
Cancer Research ,Oncology ,Neurology (clinical) - Abstract
Diffuse midline gliomas (DMGs), including those of the pons (diffuse intrinsic pontine glioma - DIPG), are pediatric CNS tumors recognized as the most lethal of all children’s cancers. Palliative radiotherapy remains the only approved treatment, with survival just 9-11 months post-diagnosis. The brain-penetrant small molecule therapy, ONC201, shows preclinical and emerging efficacy in early-stage clinical trials. However, patients invariably develop resistance, with some patients and models completely refractory to treatment. Using a powerful combination of pharmacology, proteomics, genomics, epigenetics, in vitro and in vivo modeling, across ten international laboratories, we have uncovered mechanisms underpinning resistance to ONC201. We find ONC201 elicits antagonism of the Dopamine receptor D2 (DRD2), whilst also causing mitochondrial degradation through potent agonism of the mitochondrial protease CLPP. This drives proteolysis of the electron transport chain (ETC) proteins including Succinate dehydrogenase A (SDHA) and the critical mitochondrial tricarboxylic acid (TCA) cycle regulator, Isocitrate dehydrogenase 3B (IDH3B). Loss of TCA activity reduces α-ketoglutarate and inhibits lysine demethylation, increasing methylation of H3K4me3 and H3K27me3, thus, altering the epigenome of DIPG. Mitochondrial disruption elicited redox-activated RAS-PI3K/AKT signaling, counteracted using the PI3K/AKT inhibitor paxalisib. The combination of ONC201 and paxalisib synergistically extended survival of two aggressive DIPG PDX models (SU-DIPG-VI vehicle=73 vs. combination=100-days, p=0.0027; SF8626 vehicle=36 vs. combination=43-days, p=0.0002). Compassionate access to this combination (n=2 patients; immediately post-RT and following re-RT) resulted in dramatic reductions in tumor volume, extending overall survival for the patient at diagnosis and the patient at progression (e.g., MR axial diagnosis scan = 1554 mm2, following twelve months on the combination, current tumor volume = 464 mm2 (~70% reduction), patient remains in progression free survival, 15 months since diagnosis). The clinical utility of our preclinical data is currently under investigation in the PNOC022 clinical trial (NCT05009992).
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- 2022
37. Examining health-related quality of life in pediatric cancer patients with febrile neutropenia: Factors predicting poor recovery in children and their parents
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Frank Alvaro, Leanne Super, Robert A. Phillips, Monica A. Slavin, Karin A Thursky, Richard De Abreu Lourenco, Anna Louise Crothers, Franz E Babl, Julia E Clark, Thomas Walwyn, Gabrielle M Haeusler, David Zeigler, Heather Tapp, Bhavna Padhye, and Francoise Mechinaud
- Subjects
National health ,Health related quality of life ,Pediatrics ,medicine.medical_specialty ,Group membership ,Fever ,business.industry ,Health-related quality of life ,Parent, pediatric cancer ,Febrile neutropenia ,Cancer ,Pediatric oncology ,General Medicine ,medicine.disease ,Pediatric cancer ,Blood cancer ,Quality of life ,medicine ,business ,Child ,Research Paper - Abstract
Background The impact febrile neutropenia (FN) has on the health-related quality of life (HRQoL) of children with cancer and their families is poorly understood. We sought to characterize the course of child and parent HRQoL during and following FN episodes. Method Data on HRQoL were collected in the multisite Australian Predicting Infectious ComplicatioNs in Children with Cancer (PICNICC) study. Participants were enrolled between November 2016 to January 2018. The Child Health Utility (CHU9D) was used to assess HRQoL in children (N = 167 FN events) and the Assessment of Quality of Life (AQoL-8D) was used to assess HRQoL parents (N = 218 FN events) at three time points: 0–3 days, 7-days and 30-days following the onset of FN. Group-based trajectory modeling (GBTM) was used to characterize the course of HRQoL. Findings For children, three distinct groups were identified: persistently low HRQoL over the 30-day course of follow-up (chronic: N = 78/167; 47%), increasing HRQoL after the onset of FN to 30 days follow-up (recovering: N = 36/167; 22%), and persistently high HRQoL at all three timepoints (resilient: N = 53/167; 32%). Applying these definitions, parents were classified into two distinct groups: chronic (N = 107/218, 49%) and resilient (N = 111/218, 51%). The child being male, having solid cancer, the presence of financial stress, and relationship difficulties between the parent and child were significant predictors of chronic group membership for both parents and children. Children classified as high-risk FN were significantly more likely to belong to the recovery group. Being female, having blood cancers and the absence of financial or relationship difficulties were predictive of both parents and children being in the resilient group. Interpretation Approximately half the children and parents had chronically low HRQoL scores, which did not improve following resolution of the FN episode. The child's sex, cancer type, and presence of financial and relationship stress were predictive of chronic group membership for both parents and children. These families may benefit from increased financial and psychosocial support during anti-cancer treatment. Funding National Health and Medical Research Council Grant (APP1104527).
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- 2021
38. Malignant Melanoma in Children and Adolescents Treated in Pediatric Oncology Centers: An Australian and New Zealand Children’s Oncology Group (ANZCHOG) Study
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Geoff McCowage, Maria Kirby, Rishi S. Kotecha, Jordan R. Hansford, Aditya Kumar Gupta, Peter Downie, David S. Ziegler, Tim Hassall, Charlotte Burns, Stephen J. Laughton, Frank Alvaro, Anne L. Ryan, Nicholas G. Gottardo, Ruvishani Samarasekera, and Siobhan Cross
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Cancer Research ,medicine.medical_specialty ,Pediatrics ,medicine.medical_treatment ,Disease ,Breslow Thickness ,030207 dermatology & venereal diseases ,03 medical and health sciences ,cutaneous melanoma ,0302 clinical medicine ,medicine ,Pediatric oncology ,RC254-282 ,Original Research ,childhood ,business.industry ,Melanoma ,Cancer ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Immunotherapy ,medicine.disease ,dermatology ,Oncology ,030220 oncology & carcinogenesis ,Cutaneous melanoma ,rare tumors ,outcome ,Histopathology ,business - Abstract
ObjectivesUnlike adults, malignant melanoma in children and adolescents is rare. In adult melanoma, significant progress in understanding tumor biology and new treatments, including targeted therapies and immunotherapy have markedly improved overall survival. In sharp contrast, there is a paucity of data on the biology and clinical behavior of pediatric melanoma. We report a national case series of all pediatric and adolescent malignant melanoma presenting to ANZCHOG Childhood Cancer Centers in Australia and New Zealand.MethodsA retrospective, descriptive, multi-center study was undertaken to identify patients less than 18 years of age treated for cutaneous malignant melanoma over a twenty-year period (1994 to 2014). Data on clinical characteristics, histopathology, and extent of disease, treatment and follow-up are described.ResultsA total of 37 cases of malignant melanoma were identified from all of the Australasian tertiary Childhood Cancer Centers. The median age was 10 years (range 1 month – 17 years). Clinically, the most common type of lesion was pigmented, occurring in sixteen (57%) patients, whilst amelanotic was seen in 7 patients (25%). In 11 (27.9%) the Breslow thickness was greater than 4mm. A total of 11 (29.7%) patients relapsed and 90% of these died of disease. Five-year event free survival (EFS) and overall survival were 63.2 (95% CI: 40.6 – 79.1) and 67.7% (95% CI: 45.1 – 82.6) respectively.ConclusionOur data confirms that melanoma is a rare presentation of cancer to tertiary Australasian Childhood Cancer Centers with only 37 cases identified over two decades. Notably, melanoma managed in Childhood Cancer Centers is frequently at an advanced stage, with a high percentage of patients relapsing and the majority of these patients who relapsed died of disease. This study confirms previous clinical and prognostic information to support the early multidisciplinary management in Childhood Cancer Centers, in conjunction with expert adult melanoma centers, of this rare and challenging patient group.
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- 2021
39. Parents’ experiences of postmortem tumor donation for high-grade gliomas: benefits and suggested improvements
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Frank Alvaro, Michael Rodriguez, Martin A. Weber, Andrew J. Gifford, Eden G. Robertson, Maria Tsoli, Stewart J. Kellie, David S. Ziegler, Maria Kirby, and Claire E. Wakefield
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medicine.medical_specialty ,tumor donation ,business.industry ,media_common.quotation_subject ,Childhood cancer ,Regret ,Qualitative property ,Test (assessment) ,Feeling ,glioma ,Donation ,Family medicine ,Basic and Translational Investigations ,qualitative ,DIPG ,AcademicSubjects/MED00300 ,childhood cancer ,Medicine ,AcademicSubjects/MED00310 ,business ,media_common - Abstract
Background Pediatric high-grade glioma is a devastating diagnosis. There has been no improvement in outcomes for several decades, with few children surviving 2 years postdiagnosis. Research progress has been hampered by a lack of tumor samples, which can be used to develop and test novel therapies. Postmortem tumor donations are therefore a valuable opportunity to collect tissue. In this study, we explored Australian parents’ experiences of donating their child’s tumor for research after their child had died. Methods We collected qualitative data from 11 bereaved parents who consented to donate samples of their child’s high-grade glioma for research postmortem. We asked parents about their perceived benefits/burdens of the autopsy, recommendations for improving consent discussions, and decision regret. Results Parents hoped that their donation would help to find a cure for future children with high-grade glioma. They described feeling comforted knowing that their child’s suffering may help others. Some parents also felt that the donation would help them better understand their child’s tumor. Although some parents described discomfort about procedures leading up to the autopsy, parents reported minimal regret regarding their decision to donate their child’s tumor. Parents provided recommendations to improve consent discussions, such as providing more information about the autopsy logistics and why the donation was needed. Conclusion Parents consented to autopsy for altruistic reasons, although donation may also assist parents in their grieving. There is a strong need to improve access to tumor donations for any family who wishes to donate.
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- 2021
40. Examining Health-Related Quality of Life in Pediatric Cancer Patients with Febrile Neutropenia: Factors Predicting for Poor Recovery in Children and the Parents
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Anna Louise Crothers, Monica A. Slavin, Thomas Walwyn, Gabrielle M Haeusler, Julia E Clark, Robert A. Phillips, Karin A Thursky, Franz E Babl, Frank Alvaro, Leanne Super, David S. Ziegler, Francoise Mechinaud, Heather Tapp, Bhavna Padhye, and Richard De Abreu Lourenco
- Subjects
Health related quality of life ,medicine.medical_specialty ,business.industry ,medicine.disease ,Pediatric cancer ,law.invention ,Clinical trial ,Blood cancer ,Randomized controlled trial ,Quality of life ,law ,Family medicine ,medicine ,Observational study ,business ,Febrile neutropenia - Abstract
Background: The impact of febrile neutropenia (FN) on the health-related quality of life (HRQoL) of children with cancer is poorly understood. We sought to characterise the course of child and parent HRQoL during and following FN episodes. Method: Data on HRQoL were collected in the multisite Australian PICNICC study. Multiple, discrete FN episodes per patient were allowed. HRQoL was assessed using the Child Health Utility (CHU9D) in children (n=167) and the Assessment of Quality of Life (AQoL-8D) in their parents (N=218) at three time points: 0-3 days, 7-days and 30-days following FN onset. Group-based trajectory modelling (GBTM) was used to characterise the course of HRQoL. Findings: For children, three distinct groups were identified: persistently low HRQoL over 30-days (chronic, 47%), increasing HRQoL from FN onset to 30-days (recovery, 22%), and persistently high HRQoL at all three timepoints (resilient, 32%). Applying these definitions, parents were classified into two distinct groups: chronic (49%) and resilient (51%).The child being male, having solid cancers, the presence of financial stress and relationship difficulties between the parent and child were significant predictors of chronic group membership for parents and children. Children classified as high-risk FN were significantly more likely to belong to the recovery group. Being female, having blood cancers and the absence of financial or relationship difficulties were predictive of being in the resilient group for both parents and children Interpretation: Approximately half the children and parents had chronically low HRQoL scores, which did not improve following resolution of the FN episode. The child’s sex, cancer type, and presence of financial and relationship stress were predictive of chronic group membership for both parents and children. These families may benefit from increased financial and psychosocial support during anti-cancer treatment. Trial Registration: The Australian PICNICC study is a prospective, multicentre, observational study (Australian New Zealand Clinical Trials Registry 12616001440415). Funding: This study was funded by a National Health and Medical Research Council (NHMRC) Project Grant (APP1104527). Declaration of Interest: GMH was supported by a Victorian Cancer Agency early career fellowship. FEB was part funded by a grant from the Royal Children's Hospital Foundation, Melbourne and the NHMRC. RP was funded by a Post-Doctoral Research Fellow grant from the NIHR, UK (PDF10872). MS has received grants from Merck, Gilead Sciences, F2G and Pfizer. KAT, RDAL, ZA and FM. and RP have no disclosures. Ethical Approval: This study utilised data from the PICNICC RCT, HREC Number (36040A, Royal Children’s Hospital Melbourne Human Research Ethics Committee) and ratified by the UTS HREC (ETH17-1128).
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- 2021
41. Preclinical and clinical evaluation of German-sourced ONC201 for the treatment of H3K27M-mutant diffuse intrinsic pontine glioma
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Ryan J Duchatel, Abdul Mannan, Ameha S Woldu, Tom Hawtrey, Phoebe A Hindley, Alicia M Douglas, Evangeline R Jackson, Izac J Findlay, Zacary P Germon, Dilana Staudt, Padraic S Kearney, Nathan D Smith, Kate E Hindley, Jason E Cain, Nicolas André, Andres Morales La Madrid, Brett Nixon, Geoffry N De Iuliis, Javad Nazarian, Kathleen Irish, Frank Alvaro, David D Eisenstat, Alexander Beck, Nicholas A Vitanza, Sabine Mueller, Jonathan C Morris, Matthew D Dun, and University of Zurich
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diffuse midline glioma ,diffuse intrinsic ,10036 Medical Clinic ,Basic and Translational Investigations ,pontine glioma ,AcademicSubjects/MED00300 ,ONC201 ,AcademicSubjects/MED00310 ,610 Medicine & health - Abstract
Background Diffuse intrinsic pontine glioma (DIPG) is a fatal childhood brainstem tumor for which radiation is the only treatment. Case studies report a clinical response to ONC201 for patients with H3K27M-mutant gliomas. Oncoceutics (ONC201) is only available in the United States and Japan; however, in Germany, DIPG patients can be prescribed and dispensed a locally produced compound—ONC201 German-sourced ONC201 (GsONC201). Pediatric oncologists face the dilemma of supporting the administration of GsONC201 as conjecture surrounds its authenticity. Therefore, we compared GsONC201 to original ONC201 manufactured by Oncoceutics Inc. Methods Authenticity of GsONC201 was determined by high-resolution mass spectrometry and nuclear magnetic resonance spectroscopy. Biological activity was shown via assessment of on-target effects, in vitro growth, proliferation, and apoptosis analysis. Patient-derived xenograft mouse models were used to assess plasma and brain tissue pharmacokinetics, pharmacodynamics, and overall survival (OS). The clinical experience of 28 H3K27M+ mutant DIPG patients who received GsONC201 (2017–2020) was analyzed. Results GsONC201 harbored the authentic structure, however, was formulated as a free base rather than the dihydrochloride salt used in clinical trials. GsONC201 in vitro and in vivo efficacy and drug bioavailability studies showed no difference compared to Oncoceutics ONC201. Patients treated with GsONC201 (n = 28) showed a median OS of 18 months (P = .0007). GsONC201 patients who underwent reirradiation showed a median OS of 22 months compared to 12 months for GsONC201 patients who did not (P = .012). Conclusions This study confirms the biological activity of GsONC201 and documents the OS of patients who received the drug; however, GsONC201 was never used as a monotherapy.
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- 2021
42. Improving checkpointing intervals by considering individual job failure probabilities
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Frank, Alvaro, primary, Baumgartner, Manuel, additional, Salkhordeh, Reza, additional, and Brinkmann, Andre, additional
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- 2021
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43. Methotrexate-related central neurotoxicity: clinical characteristics, risk factors and genome-wide association study in children treated for acute lymphoblastic leukemia
- Author
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Michael C.J. Quinn, Luciano Dalla-Pozza, Georgia Chenevix-Trench, Glenn M. Marshall, Draga Barbaric, Rosemary Sutton, Daniel Catchpoole, John A. Lawson, Pasquale M Barbaro, Frank Alvaro, Stuart MacGregor, Rishi S. Kotecha, Carly George, Tamas Revesz, Jodie E. Giles, Toby Trahair, Chelsea Mayoh, Francoise Mechinaud, and Marion K. Mateos
- Subjects
musculoskeletal diseases ,Oncology ,medicine.medical_specialty ,Lymphoblastic Leukemia ,Immunology ,Genome-wide association study ,03 medical and health sciences ,0302 clinical medicine ,immune system diseases ,Risk Factors ,Internal medicine ,Antineoplastic Combined Chemotherapy Protocols ,medicine ,Humans ,heterocyclic compounds ,Cumulative incidence ,Risk factor ,skin and connective tissue diseases ,Child ,1102 Cardiorespiratory Medicine and Haematology ,Injections, Spinal ,030304 developmental biology ,First episode ,0303 health sciences ,business.industry ,Incidence (epidemiology) ,Neurotoxicity ,Australia ,Hematology ,Precursor Cell Lymphoblastic Leukemia-Lymphoma ,medicine.disease ,Methotrexate ,030220 oncology & carcinogenesis ,business ,medicine.drug ,Genome-Wide Association Study - Abstract
Symptomatic methotrexate-related central neurotoxicity (MTX neurotoxicity) is a severe toxicity experienced during acute lymphoblastic leukemia (ALL) therapy with potential long-term neurologic complications. Risk factors and long-term outcomes require further study. We conducted a systematic, retrospective review of 1,251 consecutive Australian children enrolled on Berlin-Frankfurt-Münster or Children's Oncology Group-based protocols between 1998-2013. Clinical risk predictors for MTX neurotoxicity were analyzed using regression. A genome-wide association study (GWAS) was performed on 48 cases and 537 controls. The incidence of MTX neurotoxicity was 7.6% (n=95 of 1,251), at a median of 4 months from ALL diagnosis and 8 days after intravenous or intrathecal MTX. Grade 3 elevation of serum aspartate aminotransferase (P=0.005, odds ratio 2.31 [range, 1.28–4.16]) in induction/consolidation was associated with MTX neurotoxicity, after accounting for the only established risk factor, age ≥10 years. Cumulative incidence of CNS relapse was increased in children where intrathecal MTX was omitted following symptomatic MTX neurotoxicity (n=48) compared to where intrathecal MTX was continued throughout therapy (n=1,174) (P=0.047). Five-year central nervous system relapse-free survival was 89.2 4.6% when intrathecal MTX was ceased compared to 95.4 0.6% when intrathecal MTX was continued. Recurrence of MTX neurotoxicity was low (12.9%) for patients whose intrathecal MTX was continued after their first episode. The GWAS identified single-nucletide polymorphism associated with MTX neurotoxicity near genes regulating neuronal growth, neuronal differentiation and cytoskeletal organization (P
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- 2020
44. Whole genome, transcriptome and methylome profiling enhances actionable target discovery in high-risk pediatric cancer
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Mustafa Syed, Emmy D.G. Fleuren, Chelsea Mayoh, Velimir Gayevskiy, Richard B. Lock, Toby Trahair, Emilie E. Wilkie, Mark Pinese, Heather Tapp, Michelle Haber, Amit Kumar, Inigo Martincorena, Jonathan Baber, Alexandra Sherstyuk, Dylan Grebert-Wade, Rachel Bowen-James, Tracey A. O'Brien, Frank Alvaro, Marie Wong, Andrew J. Gifford, Luciano Dalla-Pozza, David S. Ziegler, Paul Wood, Murray D. Norris, Glenn M. Marshall, Marie Gauthier, David Thomas, Peter Priestley, Mark J. Cowley, Paul G Ekert, Nicholas G. Gottardo, M. Emmy M. Dolman, Vanessa Tyrrell, Dong Anh Khuong-Quang, Geoffry B. McCowage, Andrew S. Moore, Katherine M. Tucker, Emily Mould, Paulette Barahona, Judy Kirk, Loretta Lau, Seong Lin Khaw, Federico Abascal, Meera Warby, Elodie Manouvrier, Patricia Sullivan, Noemi A. Bolanos, Patrick Strong, and Jordan R. Hansford
- Subjects
0301 basic medicine ,Oncology ,Male ,medicine.medical_specialty ,Adolescent ,Genome ,Pediatrics ,General Biochemistry, Genetics and Molecular Biology ,Germline ,Transcriptome ,03 medical and health sciences ,Epigenome ,0302 clinical medicine ,Risk Factors ,Internal medicine ,Neoplasms ,Exome Sequencing ,medicine ,Humans ,Precision Medicine ,Child ,Exome sequencing ,Whole genome sequencing ,Whole Genome Sequencing ,business.industry ,Infant ,General Medicine ,DNA Methylation ,Precision medicine ,Pediatric cancer ,Neoplasm Proteins ,030104 developmental biology ,030220 oncology & carcinogenesis ,Child, Preschool ,Mutation ,Human genome ,Female ,business - Abstract
The Zero Childhood Cancer Program is a precision medicine program to benefit children with poor-outcome, rare, relapsed or refractory cancer. Using tumor and germline whole genome sequencing (WGS) and RNA sequencing (RNAseq) across 252 tumors from high-risk pediatric patients with cancer, we identified 968 reportable molecular aberrations (39.9% in WGS and RNAseq, 35.1% in WGS only and 25.0% in RNAseq only). Of these patients, 93.7% had at least one germline or somatic aberration, 71.4% had therapeutic targets and 5.2% had a change in diagnosis. WGS identified pathogenic cancer-predisposing variants in 16.2% of patients. In 76 central nervous system tumors, methylome analysis confirmed diagnosis in 71.1% of patients and contributed to a change of diagnosis in two patients (2.6%). To date, 43 patients have received a recommended therapy, 38 of whom could be evaluated, with 31% showing objective evidence of clinical benefit. Comprehensive molecular profiling resolved the molecular basis of virtually all high-risk cancers, leading to clinical benefit in some patients.
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- 2020
45. Enrolment in paediatric oncology early‐phase clinical trials: The health‐care professionals' perspective
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Tracey A. O'Brien, Richard J. Cohn, Susan Russell, Richard Mitchell, Frank Alvaro, Eden G. Robertson, Toby Trahair, David S. Ziegler, Draga Barbaric, Glenn M. Marshall, Antoinette Anazodo, Claire E. Wakefield, Nicole E Cousens, and Peter Lewis
- Subjects
Adult ,Male ,medicine.medical_specialty ,Adolescent ,Attitude of Health Personnel ,Health Personnel ,education ,Medical Oncology ,Pediatrics ,03 medical and health sciences ,0302 clinical medicine ,Informed consent ,Surveys and Questionnaires ,030225 pediatrics ,Health care ,medicine ,Humans ,Parent-Child Relations ,Child ,Social work ,business.industry ,Paediatric oncology ,Patient Selection ,Perspective (graphical) ,Australia ,Middle Aged ,Clinical trial ,Cross-Sectional Studies ,Clinical Trials, Phase III as Topic ,Child, Preschool ,030220 oncology & carcinogenesis ,Family medicine ,Pediatrics, Perinatology and Child Health ,Female ,business ,Early phase ,Decision Making, Shared ,New Zealand ,Patient education - Abstract
Aim Approximately 20-30% of children/adolescents with cancer will not respond to standard therapies. These children are usually offered experimental treatment in the form of an early-phase clinical trial. We examined the perspectives of health-care professionals (HCPs) regarding obtaining informed consent for early-phase trials in paediatric oncology. Methods We collected survey data from 87 HCPs working in paediatric cancer centres across Australia and New Zealand. Results HCPs were, on average, 44 years old (range = 25-74), with 15.8 years' experience in paediatric oncology (range = 1-40). Few HCPs (17.4%) received training for early-phase trial consent; however, most were willing to attend training (77.9%). HCPs (61.6%) reported that they informed families about early-phase trials without any attempt to influence their decision. However, 23.3% of HCPs reported that they informed families that their child would benefit. HCPs' main obstacle in obtaining consent was their perception of parents' eagerness to 'try anything' (52.3%). HCPs perceived that many parents misunderstood key clinical trials concepts, with 25.2% of HCPs believing that not being given clear information influenced parents' decisions. Physicians were more likely than social workers/nurses to inform families that other children will benefit from enrolment in the study. Social workers/nurses appeared to rate the chance of benefits for the patient higher than physicians. Conclusions HCPs may experience difficulty conducting early-phase trial consultations and obtaining valid informed consent. Our study highlights the need for formal training for HCPs and additional patient education tools.
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- 2018
46. A risk score including microdeletions improves relapse prediction for standard and medium risk precursor B-cell acute lymphoblastic leukaemia in children
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Anuruddhika Dissanayake, Pauline Dalzell, Frank Alvaro, Luciano Dalla Pozza, Toby Trahair, Jodie E. Giles, Chelsea Mayoh, Anthea Ng, Tamara Law, Nicola C. Venn, Martin Schrappe, Tamas Revesz, Rosemary Sutton, Michelle Haber, Draga Barbaric, Monique L. den Boer, Rob Pieters, Murray D. Norris, Glenn M. Marshall, Judith M. Boer, and Pediatrics
- Subjects
Male ,0301 basic medicine ,Oncology ,medicine.medical_specialty ,Neoplasm, Residual ,Adolescent ,Genotype ,Risk Assessment ,03 medical and health sciences ,0302 clinical medicine ,Recurrence ,Risk Factors ,Precursor B-Cell Lymphoblastic Leukemia-Lymphoma ,Internal medicine ,Biomarkers, Tumor ,medicine ,Overall survival ,Humans ,Child ,Childhood all ,Proportional Hazards Models ,Sequence Deletion ,Framingham Risk Score ,business.industry ,Age Factors ,Infant ,Cancer ,Hematology ,Prognosis ,medicine.disease ,Minimal residual disease ,030104 developmental biology ,Child, Preschool ,030220 oncology & carcinogenesis ,Cohort ,B-cell acute lymphoblastic leukaemia ,Female ,Chromosome Deletion ,Medium Risk ,business - Abstract
To prevent relapse, high risk paediatric acute lymphoblastic leukaemia (ALL) is treated very intensively. However, most patients who eventually relapse have standard or medium risk ALL with low minimal residual disease (MRD) levels. We analysed recurrent microdeletions and other clinical prognostic factors in a cohort of 475 uniformly treated non-high risk precursor B-cell ALL patients with the aim of better predicting relapse and refining risk stratification. Lower relapse-free survival at 7 years (RFS) was associated with IKZF1 intragenic deletions (P 5 × 10-5 (P
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- 2018
47. DIPG-29. PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE 3-KINASE (PI3K) INHIBITION DRIVES PROTEIN KINASE C ACTIVATION (PKC) IN DIFFUSE INTRINSIC PONTINE GLIOMA (DIPG)
- Author
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Alicia Douglas, Esther Hulleman, Ryan J. Duchatel, Angel M. Carcaboso, Matthew D. Dun, Evangeline R. Jackson, Abdul Mannan, Dilana Elisabeth Staudt, David A. Skerrett-Byrne, David S. Ziegler, M Fairuz B Jamaluddin, Michelle Monje, Maria Tsoli, Ameha Woldu, and Frank Alvaro
- Subjects
Cancer Research ,Phosphoinositide 3-kinase ,biology ,Chemistry ,Cell growth ,Kinase ,Diffuse Midline Glioma/DIPG ,chemistry.chemical_compound ,Oncology ,Phosphatidylinositol 4,5-bisphosphate ,Apoptosis ,biology.protein ,Cancer research ,AcademicSubjects/MED00300 ,AcademicSubjects/MED00310 ,Neurology (clinical) ,Signal transduction ,Protein kinase C ,PI3K/AKT/mTOR pathway - Abstract
Recurring somatic mutations and gene amplifications to members of the phosphatidylinositol-4,5-bisphosphate 3-kinase (PI3K) signaling axis are overarching contributors to the aggressive growth and survival of diffuse intrinsic pontine gliomas (DIPG). However, targeting PI3K has thus far failed to improve outcomes for patients in the clinic. To identify the mechanisms underpinning PI3K/AKT/mTOR treatment failure in DIPG, we have employed high-resolution quantitative phosphoproteomic profiling in patient-derived DIPG cell lines harboring H3K27M and PI3K mutations, +/- the blood-brain barrier permeable PI3K inhibitor, paxalisib (previously “GDC-0084”, currently in Phase I trials - NCT03696355) and rapamycin. Paxalisib was significantly more potent than rapamycin at inducing PI3K/AKT/mTOR inhibition, however, both simultaneously activated protein kinase C signaling (pT500PKCβ +8.2 and +4.5 fold, respectively). PKC lies directly upstream of myristoylated alanine-rich C-kinase substrate (MARCKs), which was phosphorylated at Ser170 by +9.4 and +4.7 fold, respectively; promoting actin cytoskeletal remodeling and cellular migration. Indeed, activation of PKC signaling using phorbol 12-myristate 13-acetate (PMA), increased DIPG cell growth and migration by >3 fold. Targeting PKC using midostaurin (FDA-approved for acute myeloid leukemia), and enzastaurin (blood-brain barrier penetrant inhibitor of PKCβ), in combination with paxalisib was highly synergistic (CI=
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- 2020
48. Reducing False Node Failure Predictions in HPC
- Author
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Frank, Alvaro, primary, Yang, Dai, additional, Brinkmann, Andre, additional, Schulz, Martin, additional, and Suss, Tim, additional
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- 2019
- Full Text
- View/download PDF
49. A multicenter, randomized study of decitabine as epigenetic priming with induction chemotherapy in children with AML
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Laura Martin, David W. Lee, John D. Carpten, Aru Narendran, Philip Barnette, Winnie S. Liang, Soheil Meshinchi, Todd M. Cooper, Bodour Salhia, Frank Alvaro, Robert J. Arceci, Daniel H. Wai, Lia Gore, Jessica Pollard, Margaret E. Macy, Jessica Boklan, Christophe Legendre, Jason E. Farrar, Timothy J. Triche, Gerald C. Gooden, and Carola A.S. Arndt
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0301 basic medicine ,Male ,Oncology ,lcsh:Medicine ,Pediatrics ,Epigenesis, Genetic ,law.invention ,chemistry.chemical_compound ,0302 clinical medicine ,Randomized controlled trial ,AML ,law ,Child ,Promoter Regions, Genetic ,Genetics (clinical) ,Etoposide ,0303 health sciences ,DNA methylation ,Cytarabine ,Combination chemotherapy ,Induction Chemotherapy ,3. Good health ,Leukemia, Myeloid, Acute ,Treatment Outcome ,Tolerability ,Child, Preschool ,030220 oncology & carcinogenesis ,Azacitidine ,Female ,Deoxycytidine ,Epigenetics ,medicine.drug ,medicine.medical_specialty ,Adolescent ,lcsh:QH426-470 ,Decitabine ,Neutropenia ,03 medical and health sciences ,Internal medicine ,Genetics ,medicine ,Humans ,Pharmacokinetics ,Adverse effect ,Molecular Biology ,030304 developmental biology ,business.industry ,Research ,Daunorubicin ,lcsh:R ,Infant ,Induction chemotherapy ,medicine.disease ,Clinical trial ,lcsh:Genetics ,030104 developmental biology ,chemistry ,Pharmacodynamics ,Immunology ,business ,Developmental Biology - Abstract
BackgroundDecitabine is a deoxycytidine nucleoside derivative inhibitor of DNA-methyltransferases, which has been studied extensively and is approved for myelodysplastic syndrome in adults but with less focus in children. Accordingly, we conducted a phase 1 multicenter, randomized, open-label study to evaluate decitabine pre-treatment before standard induction therapy in children with newly diagnosed AML to assess safety and tolerability and explore a number of biologic endpoints.ResultsTwenty-four patients were fully assessable for all study objectives per protocol (10 in Arm A, 14 in Arm B). All patients experienced neutropenia and thrombocytopenia. The most common grade 3 and 4 non-hematologic adverse events observed were gastrointestinal toxicities and hypophosphatemia. Plasma decitabine PK were similar to previously reported adult data. Overall CR/CRi was similar for the two arms. MRD negativity at end-induction was 85% in Arm A versus 67% in Arm B patients. DNA methylation measured in peripheral blood over the course of treatment tracked with blast clearance and matched marrow aspirates at day 0 and day 21. Unlike end-point marrow analyses, promoter methylation in blood identified an apparent reversal of response in the lone treatment failure, one week prior to the patient’s marrow aspirate confirming non-response. Decitabine-induced effects of end-induction marrows in Arm A were reflected by changes in DNA methylation and gene expression comparison with matched paired marrow diagnostic aspirates.ConclusionsThis first-in-pediatrics trial demonstrates that decitabine prior to standard combination chemotherapy is feasible and well tolerated in children with newly diagnosed AML. Pre-treatment with decitabine may represent a newer therapeutic option for pediatric AML, especially as it appears to induce important epigenetic alterations. The novel biological correlates studied in this trial offer a clinically relevant window into disease progression and remission. Additional studies are needed to definitively assess whether decitabine can enhance durability responses in children with AML. This trial was registered at www.clinicaltrials.gov as NCT01177540.
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- 2017
50. Diagnostic Yield of Initial and Consecutive Blood Cultures in Children With Cancer and Febrile Neutropenia
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Thomas Walwyn, Frank Alvaro, Leon J Worth, David S. Ziegler, Francoise Mechinaud, Karin A Thursky, Heather Tapp, Leanne Super, Monica A Slavin, Robert A. Phillips, Bhavna Padhye, Marianne Phillips, Richard De Abreu Lourenco, Franz E Babl, Hannah Clark, Gabrielle M Haeusler, and Julia E Clark
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medicine.medical_specialty ,medicine.drug_class ,Population ,Antibiotics ,Fever of Unknown Origin ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Bloodstream infection ,Neoplasms ,medicine ,Humans ,Blood culture ,030212 general & internal medicine ,Fever of unknown origin ,education ,Prospective cohort study ,Child ,Febrile Neutropenia ,education.field_of_study ,medicine.diagnostic_test ,business.industry ,Australia ,Cancer ,General Medicine ,medicine.disease ,Anti-Bacterial Agents ,Infectious Diseases ,Blood Culture ,030220 oncology & carcinogenesis ,Pediatrics, Perinatology and Child Health ,business ,Febrile neutropenia - Abstract
Background The timing and necessity of repeated blood cultures (BCs) in children with cancer and febrile neutropenia (FN) are unknown. We evaluated the diagnostic yield of BCs collected pre- and post-empiric FN antibiotics. Methods Data collected prospectively from the Australian Predicting Infectious ComplicatioNs in Children with Cancer (PICNICC) study were used. Diagnostic yield was calculated as the number of FN episodes with a true bloodstream infection (BSI) detected divided by the number of FN episodes that had a BC taken. Results A BSI was identified in 13% of 858 FN episodes. The diagnostic yield of pre-antibiotic BCs was higher than of post-antibiotic cultures (12.3% vs 4.4%, P < .001). Two-thirds of the post-antibiotic BSIs were associated with a new episode of fever or clinical instability, and only 2 new BSIs were identified after 48 hours of empiric antibiotics and persistent fever. A contaminated BC was identified more frequently in post-antibiotic cultures. Conclusions In the absence of new fever or clinical instability, BCs beyond 48 hours of persistent fever have limited yield. Opportunity exists to optimize BC collection in this population and reduce the burden of unnecessary tests on patients, healthcare workers, and hospitals.
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- 2019
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