233 results on '"Francis MJ"'
Search Results
2. Clinical evaluation of AusDiagnostics SARS-CoV-2 multiplex tandem PCR assay
- Author
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Attwood, LO, Francis, MJ, Hamblin, J, Korman, TM, Druce, J, Graham, M, Attwood, LO, Francis, MJ, Hamblin, J, Korman, TM, Druce, J, and Graham, M
- Abstract
BACKGROUND: In the context of the pandemic, the rapid emergency use authorisation of diagnostic assays for SARS-CoV-2 has meant there are few peer-reviewed published studies of clinical performance of commercial assays. AIMS: To evaluate the clinical performance of AusDiagnostics respiratory multiplex tandem PCR assay including SARS-CoV-2. METHODS: We reviewed the results following implementation of AusDiagnostics respiratory multiplex tandem PCR assay including SARS-CoV-2, and compared with an in-house RT-PCR assay at our State Reference Laboratory. RESULTS: Initial validation using AusDiagnostics coronavirus multiplex tandem PCR assay including SARS-CoV-2 demonstrated good concordance with the State Reference Laboratory. After implementing the AusDiagnostics respiratory multiplex tandem PCR assay including SARS-CoV-2, we tested 7839 samples. 127 samples in which SARS-CoV-2 was detected using the AusDiagnostics assay were referred for testing at the State Reference Laboratory, with concordant results in 118/127 (92.9%) of samples. After resolution of discrepancies, 125/127 (98.4%) of AusDiagnostics results were determined to be true positive results. Out of 7839 samples tested for SARS-CoV-2 during this period, only 2 tests (0.02%) were indeterminate results. CONCLUSION: The AusDiagnostics respiratory MT-PCR assay is a reliable assay for detection of SARS-CoV-2.
- Published
- 2020
3. Respiratory virus detection and co-infection in children and adults in a large Australian hospital in 2009-2015
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Ching, NS, Kotsanas, D, Easton, ML, Francis, MJ, Korman, TM, Buttery, JP, Ching, NS, Kotsanas, D, Easton, ML, Francis, MJ, Korman, TM, and Buttery, JP
- Abstract
AIM: This hospital network-based retrospective observational study aimed to describe the prevalence and seasonality of paediatric and adult viral respiratory pathogens and their rates of co-infections, following the introduction of a rapid multiplex molecular diagnostic assay. METHODS: All nasopharyngeal samples tested in patients presenting to Monash Health, Melbourne, Australia, from August 2009 to July 2015 by means of multiplex tandem polymerase chain reaction using the Respiratory Pathogen 12Plex kit (AusDiagnostics) were included in the analysis. RESULTS: There were 28 729 patient samples analysed after duplicate samples were excluded. Positive results were twice as likely in paediatrics, 7573/11 491 (65.9%), compared to adults, 5410/17 238 (31.4%). Co-infection was more frequent in paediatrics, 1642/7573 (21.7% of positives), compared to adults 299/5410 (5.5%). Adenovirus had a high prevalence as a co-infection, 639/990 (64.5%), in paediatrics. Testing frequency increased by 179% in the paediatric group and by 949% for adults over the 6 years of observation. CONCLUSIONS: This study demonstrated a significant difference in the positive detection rate of pathogens and co-infections between the population groups. Adenovirus had a surprisingly high prevalence as a co-infection, especially in paediatric patients. Over the study period, rapid uptake of the test was observed, especially in adults. This raises concerns about how we can ensure that testing remains rational and is able to be provided in a cost-effective manner in the future.
- Published
- 2018
4. Mains power stabilization for small computers - a case study in the Bathurst-Orange growth centre
- Author
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Diamond Jubilee Conference (1979 : Perth, W.A.) and Francis, MJ
- Published
- 1979
5. P13. Immunocytochemistry of cultured human trabecular bone stromal cells
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Quinn, JMW, primary, Graves, S, additional, Francis, MJ, additional, and Athanasou, NA, additional
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- 1994
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6. The treatment of osteomyelitis of the tibia with sodium salicylate. An experimental study in rabbits
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Dekel, S and Francis, MJ
- Abstract
Osteomyelitis was induced in the tibiae of rabbits by injecting a suspension of Staphylococcus aureus and sodium tetradecylsulphate, a sclerosing agent. These rabbits were then divided into two groups: one group remained untreated and the other was fed a diet containing sodium salicylate. Two and four weeks after induction of osteomyelitis the tibiae taken from untreated rabbits with osteomyelitis and incubated in vitro released significantly more prostaglandin E and F than the control uninjected or uninfected tibiae. Tibiae taken from rabbits treated with sodium salicylate showed minimal radiographic changes and a significantly decreased release of prostaglandin E and F compared to the untreated rabbits. Prostaglandins are known to be potent bone resorbing agents and the results of this study suggest that they may also be involved in the destruction of bone which is characteristic of osteomyelitis. The treatment of rabbits with osteomyelitis using anti-inflammatory drugs, which block synthesis of prostaglandins, in addition to antibiotics, may prevent the destruction of bone and possible sequestration thereby decreasing the risk of chronic disease.
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- 1981
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7. Dupuytren's contracture. Fine structure in relation to aetiology
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Murrell, GA, Francis, MJ, and Howlett, CR
- Abstract
The fine structure of palmar fascia from patients with Dupuytren's contracture (DC) was compared with that from patients with carpal tunnel syndrome (CTS). In contrast to previous assumptions, the ultrastructure of fibroblasts both in vivo and in vitro from DC and CTS appeared identical, indicating that myofibroblasts are not specific to DC. The major differences between DC and CTS were: 1) a sixfold and fortyfold increase in fibroblast density in cord and nodular areas of DC compared with CTS; 2) a more disorganised pattern of collagen fibrils in DC; and 3) markedly narrowed microvessels surrounded by thickened, laminated basal laminae and proliferating fibroblasts in DC compared with CTS. To account for these morphological changes a hypothesis is presented which proposes that oxygen-free radicals cause pericytic necrosis and fibroblastic proliferation. This hypothesis provides a potential avenue for therapy of DC and other fibrotic conditions.
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- 1989
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8. Release of prostaglandins from bone and muscle after tibial fracture. An experimental study in rabbits
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Dekel, S, Lenthall, G, and Francis, MJ
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The release of prostaglandins E and F from the tibiae of rabbits and the surrounding muscle in vitro after fracture and pinning, or pinning alone, has been compared to the release from unoperated tissues. The fractured tibiae released significantly more prostaglandins E and F than the control tibiae three to 14 days after operation. The pinned tibiae also released more of the two prostaglandins, although this was significant only after 14 days. Consequently it was only around the third day that the fractured tibiae released significantly more prostaglandin E than the tibiae which had been pinned, but not fractured. Similar results were obtained for the release from the muscles surrounding the tibiae. Prostaglandins are important mediators of inflammation as well as potent stimulators of bone resorption. Their increased formation in response to fracture and pinning may stimulate the vascular changes, bone resorption and the proliferation of osteogenic cells observed after trauma to bone.
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- 1981
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9. Cofactor requirements of the l-malate dehydrogenase of Pseudomonas ovalis Chester
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Phizackerley, PJ and Francis, MJ
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- 1966
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10. Free radicals and Dupuytren's contracture
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Duthie, RB, primary and Francis, MJ, additional
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- 1988
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11. Complementary and Alternative Medicine for Menopause.
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Smith-Francis MJ
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- Humans, Female, Phytotherapy methods, Aromatherapy methods, Dietary Supplements, Middle Aged, Menopause, Complementary Therapies methods
- Abstract
Complementary and alternative medicine (CAM) has gained popularity as a naturalistic approach to managing menopausal symptoms. This evidence-based article reviews recent studies on the use of CAM for menopause and aims to provide insights into the effectiveness, safety, and potential benefits of various CAM modalities. The article focuses on the biological domain, which includes supplements, botanicals, nutrition, homeopathy, and aromatherapy. Black cohosh and red clover are 2 of the most common botanicals used for managing menopausal symptoms. However, their efficacy and safety remain controversial and further research is needed to elucidate their precise mechanisms of action., Competing Interests: Disclosure I, M.J. Smith-Francis, hereby affirm that I have no commercial or financial conflicts of interest to declare relevant to the subject matter discussed herein., (Copyright © 2024 Elsevier Inc. All rights reserved.)
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- 2024
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12. A case of forensic genomics in Uganda reveals animal ownership and low exotic genetic introgression in indigenous cattle.
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Masembe C, Benda KK, Opoola O, Francis MJ, Ndinawe RP, Beine P, and Mukiibi R
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- Animals, Cattle genetics, Uganda, Genotype, Genomics methods, Genetic Introgression, Ownership
- Abstract
Background: The cattle industry contributes to Uganda's agricultural output. It faces challenges that include theft and parentage ascertainment. These challenges can benefit from recent molecular genomics and bioinformatics technologies., Objectives: We employed genomic analyses to establish potential ownership of a group of nine cattle that were being claimed by two farmers in Uganda. We investigated the genetic relationship of Ugandan cattle with regional indigenous breeds as well as exotic breeds that are currently present in Uganda. In addition, we investigated regions that are likely to be under selection in the Ugandan cattle., Methods: Hair samples were collected from seven and two animals from farmers A and B, respectively. They were genotyped for 53,218 Single Nucleotide Polymorphism markers. To establish genetic relationships between the sampled animals, we performed genomic analyses including, principal component analysis (PCA), hierarchical clustering analysis and identity by state/descent. We also performed admixture and runs of homozygosity analyses to assess the ancestry composition and identify regions potentially under selection in Ugandan cattle, respectively., Results: The seven animals from Farmer A were genetically close to each other but showed minimal relationship with the disputed animals. The two animals from Farmer B were genetically distant from each other but showed greater similarity to four of the disputed animals. Four of the disputed animals showed great dissimilarity from the animals of both farmers. Comparison of these with the reference breeds revealed minimal European exotic genetic introgression into these animals, but rather high similarity to the Sheko. Results also revealed high homozygosity in the major histocompatibility complex regions., Conclusions: Our results demonstrate the use of currently available genomic tools to empirically establish the ownership of cattle; these could be scaled up as a resourceful and viable tool that could be employed to support conflict resolution where reliable livestock identification is unavailable., (© 2023 The Authors. Veterinary Medicine and Science published by John Wiley & Sons Ltd.)
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- 2023
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13. An attenuated herpesvirus vectored vaccine candidate induces T-cell responses against highly conserved porcine reproductive and respiratory syndrome virus M and NSP5 proteins that are unable to control infection.
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de Brito RCF, Holtham K, Roser J, Saunders JE, Wezel Y, Henderson S, Mauch T, Sanz-Bernardo B, Frossard JP, Bernard M, Lean FZX, Nunez A, Gubbins S, Suárez NM, Davison AJ, Francis MJ, Huether M, Benchaoui H, Salt J, Fowler VL, Jarvis MA, and Graham SP
- Subjects
- Vaccines, Attenuated immunology, T-Lymphocytes immunology, Genetic Vectors, Animals, Swine, Herpesvirus Vaccines immunology, Immunogenicity, Vaccine, Porcine respiratory and reproductive syndrome virus immunology, Viral Nonstructural Proteins, Porcine Reproductive and Respiratory Syndrome immunology, Porcine Reproductive and Respiratory Syndrome prevention & control, Viral Matrix Proteins immunology
- Abstract
Porcine reproductive and respiratory syndrome virus (PRRSV) remains a leading cause of economic loss in pig farming worldwide. Existing commercial vaccines, all based on modified live or inactivated PRRSV, fail to provide effective immunity against the highly diverse circulating strains of both PRRSV-1 and PRRSV-2. Therefore, there is an urgent need to develop more effective and broadly active PRRSV vaccines. In the absence of neutralizing antibodies, T cells are thought to play a central role in controlling PRRSV infection. Herpesvirus-based vectors are novel vaccine platforms capable of inducing high levels of T cells against encoded heterologous antigens. Therefore, the aim of this study was to assess the immunogenicity and efficacy of an attenuated herpesvirus-based vector (bovine herpesvirus-4; BoHV-4) expressing a fusion protein comprising two well-characterized PRRSV-1 T-cell antigens (M and NSP5). Prime-boost immunization of pigs with BoHV-4 expressing the M and NSP5 fusion protein (vector designated BoHV-4-M-NSP5) induced strong IFN-γ responses, as assessed by ELISpot assays of peripheral blood mononuclear cells (PBMC) stimulated with a pool of peptides representing PRRSV-1 M and NSP5. The responses were closely mirrored by spontaneous IFN-γ release from unstimulated cells, albeit at lower levels. A lower frequency of M and NSP5 specific IFN-γ responding cells was induced following a single dose of BoHV-4-M-NSP5 vector. Restimulation using M and NSP5 peptides from PRRSV-2 demonstrated a high level of cross-reactivity. Vaccination with BoHV-4-M-NSP5 did not affect viral loads in either the blood or lungs following challenge with the two heterologous PRRSV-1 strains. However, the BoHV-4-M-NSP5 prime-boost vaccination showed a marked trend toward reduced lung pathology following PRRSV-1 challenge. The limited effect of T cells on PRRSV-1 viral load was further examined by analyzing local and circulating T-cell responses using intracellular cytokine staining and proliferation assays. The results from this study suggest that vaccine-primed T-cell responses may have helped in the control of PRRSV-1 associated tissue damage, but had a minimal, if any, effect on controlling PRRSV-1 viral loads. Together, these results indicate that future efforts to develop effective PRRSV vaccines should focus on achieving a balanced T-cell and antibody response., Competing Interests: Authors BS-B, MH, HB, and VF are employed by the company ECO Animal Health, London, UK. Authors JR, YW, SH, TM, JS, and MJ in part are employed by the company The Vaccine Group, Plymouth, UK. Author MF was employed by BioVacc Consulting Ltd. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The authors declare that project was funded by ECO Animal Health. The authors declare that this study received funding from ECO Animal Health, who contributed to the design and coordination of the study., (Copyright © 2023 de Brito, Holtham, Roser, Saunders, Wezel, Henderson, Mauch, Sanz-Bernardo, Frossard, Bernard, Lean, Nunez, Gubbins, Suárez, Davison, Francis, Huether, Benchaoui, Salt, Fowler, Jarvis and Graham.)
- Published
- 2023
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14. Molecular epidemiology, clinical features and significance of Shiga toxin detection from routine testing of gastroenteritis specimens.
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Kiss C, Kotsanas D, Francis MJ, Sait M, Valcanis M, Lacey J, Connelly K, Rogers B, Ballard SA, Howden BP, and Graham M
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- Humans, Molecular Epidemiology, Feces, Shiga Toxins genetics, Escherichia coli O157 genetics, Hemolytic-Uremic Syndrome diagnosis, Hemolytic-Uremic Syndrome epidemiology, Gastroenteritis diagnosis, Gastroenteritis epidemiology, Escherichia coli Infections, Shiga-Toxigenic Escherichia coli genetics
- Abstract
After introduction of faecal multiplex PCR that includes targets for stx1 and stx2 genes, we found stx genes were detected in 120 specimens from 111 patients over a 31-month period from 2018-2020 from a total of 14,179 separate tests performed. The proportion of stx1 only vs stx2 only vs stx1 and stx2 was 35%, 22% and 42%, respectively. There were 54 specimens which were culture positive, with 33 different serotypes identified, the predominant serotype being O157:H7 (19%). Eighty-two patients had clinical data available; we found a high rate of fever (35%), bloody diarrhoea (34%), acute kidney injury (27%), hospital admission (80%) and detection of faecal co-pathogens (23%). Only one patient developed haemolytic uraemic syndrome. We found no significant association with stx genotype and any particular symptom or complication. We found a significant association of serotypes O157:H7 and O26:H11 with bloody stool, but no significant association with any other symptom or complication., (Crown Copyright © 2023. Published by Elsevier B.V. All rights reserved.)
- Published
- 2023
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15. Estrogen receptor beta in the central amygdala regulates the deleterious behavioral and neuronal consequences of repeated social stress in female rats.
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Smiley CE, Pate BS, Bouknight SJ, Francis MJ, Nowicki AV, Harrington EN, and Wood SK
- Abstract
While over 95% of the population has reported experiencing extreme stress or trauma, females of reproductive age develop stress-induced neuropsychiatric disorders at twice the rate of males. This suggests that ovarian hormones may facilitate neural processes that increase stress susceptibility and underlie the heightened rates of these disorders, like depression and anxiety, that result from stress exposure in females. However, there is contradicting evidence in the literature regarding estrogen's role in stress-related behavioral outcomes. Estrogen signaling through estrogen receptor beta (ERβ) has been traditionally thought of as anxiolytic, but recent studies suggest estrogen exhibits distinct effects in the context of stress. Furthermore, ERβ is found abundantly in many stress-sensitive brain loci, including the central amygdala (CeA), in which transcription of the vital stress hormone, corticotropin releasing factor (CRF), can be regulated by an estrogen response element. Therefore, these experiments sought to identify the role of CeA ERβ activity during stress on behavioral outcomes in naturally cycling, adult, female Sprague-Dawley rats. Rats were exposed to an ethological model of vicarious social stress, witness stress (WS), in which they experienced the sensory and psychological aspects of an aggressive social defeat encounter between two males. Following WS, rats exhibited stress-induced anxiety-like behaviors in the marble burying taskand brain analysis revealed increased ERβ and CRF specifically within the CeA following exposure to stress cues. Subsequent experiments were designed to target this receptor in the CeA using microinjections of the ERβ antagonist, PHTPP, prior to each stress session. During WS, estrogen signaling through ERβ was responsible for the behavioral sensitization to repeated social stress. Sucrose preference, acoustic startle, and marble burying tasks determined that blocking ERβ in the CeA during WS prevented the development of depressive-, anxiety-like, and hypervigilant behaviors. Additionally, brain analysis revealed a long-term decrease of intra-CeA CRF expression in PHTPP-treated rats. These experiments indicate that ERβ signaling in the CeA, likely through its effects on CRF, contributes to the development of negative valence behaviors that result from exposure to repeated social stress in female rats., Competing Interests: None., (© 2023 The Authors. Published by Elsevier Inc.)
- Published
- 2023
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16. Stimulation of natural killer cells with small molecule inhibitors of CD38 for the treatment of neuroblastoma.
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Mills CM, Benton TZ, Piña I, Francis MJ, Reyes L, Dolloff NG, Peterson YK, and Woster PM
- Abstract
High-risk neuroblastoma (NB) accounts for 15% of all pediatric cancer deaths. Refractory disease for high-risk NB patients is attributed to chemotherapy resistance and immunotherapy failure. The poor prognosis for high-risk NB patients demonstrates an unmet medical need for the development of new, more efficacious therapeutics. CD38 is an immunomodulating protein that is expressed constitutively on natural killer (NK) cells and other immune cells in the tumor microenvironment (TME). Furthermore, CD38 over expression is implicated in propagating an immunosuppressive milieu within the TME. Through virtual and physical screening, we have identified drug-like small molecule inhibitors of CD38 with low micromolar IC
50 values. We have begun to explore structure activity relationships for CD38 inhibition through derivatization of our most effective hit molecule to develop a new compound with lead-like physicochemical properties and improved potency. We have demonstrated that our derivatized inhibitor, compound 2, elicits immunomodulatory effects in NK cells by increasing cell viability by 190 ± 36% in multiple donors and by significantly increasing interferon gamma. Additionally, we have illustrated that NK cells exhibited enhanced cytotoxicity toward NB cells (14% reduction of NB cells over 90 minutes) when given a combination treatment of our inhibitor and the immunocytokine ch14.18-IL2. Herein we describe the synthesis and biological evaluation of small molecule CD38 inhibitors and demonstrate their potential utility as a novel approach to NB immunotherapy. These compounds represent the first examples of small molecules that stimulate immune function for the treatment of cancer., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)- Published
- 2023
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17. Applications of platform technologies in veterinary vaccinology and the benefits for one health.
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Entrican G and Francis MJ
- Subjects
- Adjuvants, Immunologic, Animals, Antibody Formation, Vaccines, Subunit, One Health, Vaccinology
- Abstract
The animal-human interface has played a central role in advances made in vaccinology for the past two centuries. Many traditional veterinary vaccines were developed by growing, attenuating, inactivating and fractioning the pathogen of interest. While such approaches have been very successful, we have reached a point where they have largely been exhausted and alternative approaches are required. Furthermore, although subunit vaccines have enhanced safety profiles and created opportunities for combined discrimination between vaccinated and infected animal (DIVA) approaches, their functionality has largely been limited to diseases that can be controlled by humoral immunity until very recently. We now have a new generation of adjuvants and delivery systems that can elicit CD4 + T cells and/or CD8 + T cell responses in addition to high-titre antibody responses. We review the current vaccine platform technologies, describe their roles in veterinary vaccinology and discuss how knowledge of their mode of action allows informed decisions on their deployment with wider benefits for One Health., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2022
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18. Considerations for rapid development and licencing of conventional and platform technology veterinary vaccines.
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Francis MJ
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- Animals, Pandemics, Technology, COVID-19 prevention & control, COVID-19 veterinary, Poultry Diseases, Vaccines
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The threat posed by zoonotic diseases and other livestock pathogens has never been greater, and thus we must do all we can to learn from experience in order to tackle emerging disease threats. The process of developing a new veterinary vaccine involves the generation of a specific set of data in order to meet the strict product licencing requirements of regulatory approval bodies around the globe. As a result, it is important that those embarking on the development of a vaccine using either conventional or novel platform technologies understand these regulations. In addition, there are a number of specific requirements that one needs to take into consideration when developing a product specifically for the commercial poultry market. This paper briefly outlines the veterinary vaccine development process in general and then explores how this process can be accelerated. It also recognizes the "One Health" lessons that can be learnt from the recent rapid development of vaccines to tackle the COVID-19 pandemic and acknowledges the important measures that regulatory authorities have taken in the creation of an environment to facilitate the licencing of new vaccine platform technologies.
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- 2022
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19. Corynebacterium macginleyi in the era of MALDI-TOF MS: epidemiology, susceptibility patterns and prevalence of co-infection.
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Fong P, Butel-Simoes G, Francis MJ, Korman TM, and Graham M
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- Child, Corynebacterium genetics, Humans, Prevalence, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization methods, Coinfection epidemiology
- Abstract
Corynebacterium macginleyi has long been associated with ocular infections and has more recently been rarely implicated in systemic infections. There is a paucity of literature regarding the rate of C. macginleyi co-infection with other bacterial and viral pathogens and regarding the incidence of C. macginleyi infection in the paediatric population. In this study, we report 30 isolates of C. macginleyi of ocular origin from 26 patients, identified using matrix-assisted laser desorption ionisation-time of flight mass spectrometry (MALDI-TOF MS). The rates of co-isolation with bacterial and viral pathogens were 62% (n=16/26) and 39% (n=5/13), respectively, in this study. Of these, 13 patients had molecular testing performed as requested by treating clinicians for either the Chlamydia trachomatis/Neisseria gonorrhoeae PCR or herpes/enterovirus/adenovirus multiplex PCR. All isolates tested susceptible to linezolid, vancomycin and ciprofloxacin, with variable resistance to tetracycline, clindamycin and penicillin using EUCAST breakpoints., (Copyright © 2021 Royal College of Pathologists of Australasia. Published by Elsevier B.V. All rights reserved.)
- Published
- 2022
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20. How can real-world evidence aid decision making during the life cycle of nonprescription medicines?
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Csoke E, Landes S, Francis MJ, Ma L, Teotico Pohlhaus D, and Anquez-Traxler C
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- Decision Making, Drug Development, Evidence-Based Medicine, Nonprescription Drugs
- Abstract
Real-world evidence (RWE) is an emerging scientific discipline which is being increasingly utilized for decision making on prescription-only medicines. However, there has been little focus to date on the application of RWE within the nonprescription sector. This paper reviews the existing and potential applications of RWE for nonprescription medicines, using the nonprescription medicine life cycle as a framework for discussion. Relevant sources of real-world data (RWD) are reviewed and compared with those available for prescribed medicines. Existing life-cycle data gaps are identified where RWE is required or where use of RWE can complement data from randomized controlled trials. Published RWE examples relating to nonprescription medicines are summarized, and potential relevant future sources of RWD discussed. Challenges and limitations to the use of RWE on nonprescription medicines are discussed, and recommendations made to promote optimal and appropriate use of RWE in this sector. Overall, RWE currently plays a key role in specific phases of the nonprescription medicine life cycle, including reclassification and postmarketing safety surveillance. The increasing availability of patient-generated health data is likely to further increase the utilization of RWE to aid decision making on nonprescription medicines., (© 2021 The Authors. Clinical and Translational Science published by Wiley Periodicals LLC on behalf of American Society for Clinical Pharmacology and Therapeutics.)
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- 2022
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21. Using cross-species vaccination approaches to counter emerging infectious diseases.
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Warimwe GM, Francis MJ, Bowden TA, Thumbi SM, and Charleston B
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- Animals, COVID-19 epidemiology, COVID-19 immunology, COVID-19 prevention & control, Humans, SARS-CoV-2 immunology, Species Specificity, Viral Zoonoses transmission, Communicable Diseases, Emerging immunology, Communicable Diseases, Emerging prevention & control, Cross Reactions immunology, Vaccination, Vaccines immunology, Viral Zoonoses immunology, Viral Zoonoses prevention & control
- Abstract
Since the initial use of vaccination in the eighteenth century, our understanding of human and animal immunology has greatly advanced and a wide range of vaccine technologies and delivery systems have been developed. The COVID-19 pandemic response leveraged these innovations to enable rapid development of candidate vaccines within weeks of the viral genetic sequence being made available. The development of vaccines to tackle emerging infectious diseases is a priority for the World Health Organization and other global entities. More than 70% of emerging infectious diseases are acquired from animals, with some causing illness and death in both humans and the respective animal host. Yet the study of critical host-pathogen interactions and the underlying immune mechanisms to inform the development of vaccines for their control is traditionally done in medical and veterinary immunology 'silos'. In this Perspective, we highlight a 'One Health vaccinology' approach and discuss some key areas of synergy in human and veterinary vaccinology that could be exploited to accelerate the development of effective vaccines against these shared health threats., (© 2021. Springer Nature Limited.)
- Published
- 2021
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22. Stability of Chimpanzee Adenovirus Vectored Vaccines (ChAdOx1 and ChAdOx2) in Liquid and Lyophilised Formulations.
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Berg A, Wright D, Dulal P, Stedman A, Fedosyuk S, Francis MJ, Charleston B, Warimwe GM, and Douglas AD
- Abstract
Adenovirus vectored vaccines have entered global use during the COVID-19 pandemic, and are in development for multiple other human and veterinary applications. An attraction of the technology is the suitability of the vaccines for storage at 2-8 °C for months. Widely used COVID-19 vaccine ChAdOx1 nCoV-19 (University of Oxford/AstraZeneca) is based on a species E simian adenovirus. Species E simian serotypes have been used in a wide range of other development programs, but the stability of such vectors has not been extensively described in the peer-reviewed literature. Here, we explore the stability of two candidate vaccines based on two species E serotypes: a Rift Valley fever vaccine based upon the ChAdOx1 vector (Y25 serotype) used in ChAdOx1 nCoV-19, and a rabies vaccine based upon a ChAdOx2 vector (AdC68 serotype). We describe each vector's stability in liquid and lyophilised formulations using in vitro and in vivo potency measurements. Our data support the suitability of liquid formulations of these vectors for storage at 2-8 °C for up to 1 year, and potentially for nonrefrigerated storage for a brief period during last-leg distribution (perhaps 1-3 days at 20 °C-the precise definition of acceptable last-leg storage conditions would require further product-specific data). Depending upon the level of inprocess potency loss that is economically acceptable, and the level of instorage loss that is compatible with maintenance of acceptable end-of-storage potency, a previously reported lyophilised formulation may enable longer term storage at 20 °C or storage for a number of days at 30 °C.
- Published
- 2021
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23. Selective targeting of CD38 hydrolase and cyclase activity as an approach to immunostimulation.
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Benton TZ, Mills CM, Turner JM, Francis MJ, Solomon DJ, Burger PB, Peterson YK, Dolloff NG, Bachmann AS, and Woster PM
- Abstract
The ectoenzyme CD38 is highly expressed on the surface of mature immune cells, where they are a marker for cell activation, and also on the surface of multiple tumor cells such as multiple myeloma (MM). CD38-targeted monoclonal antibodies (MABs) such as daratumumab and isatuximab bind to CD38 and promote cancer cell death by stimulating the antitumor immune response. Although MABs are achieving unprecedented success in a percentage of cases, high rates of resistance limit their efficacy. Formation of the immunosuppressive intermediate adenosine is a major route by which this resistance is mediated. Thus there is an urgent need for small molecule agents that boost the immune response in T-cells. Importantly, CD38 is a dual-function enzyme, serving as a hydrolase and a nicotinamide adenine dinucleotide (NAD
+ ) cyclase, and both of these activities promote immunosuppression. We have employed virtual and physical screening to identify novel compounds that are selective for either the hydrolase or the cyclase activity of CD38, and have demonstrated that these compounds activate T cells in vitro . We are currently optimizing these inhibitors for use in immunotherapy. These small molecule inhibitors of the CD38-hydrolase or cyclase activity can serve as chemical probes to determine the mechanism by which CD38 promotes resistance to MAB therapy, and could become novel and effective therapeutic agents that produce immunostimulatory effects. Our studies have identified the first small molecule inhibitors of CD38 specifically for use as immunostimulants., Competing Interests: None of the authors of this manuscript have any conflicts to declare., (This journal is © The Royal Society of Chemistry.)- Published
- 2021
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24. Impact of on-site compared to off-site testing for severe acute respiratory coronavirus virus 2 (SARS-CoV-2) on duration of isolation and resource utilization.
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Roberts AT, Wong G, Kotsanas D, Francis MJ, Stuart RL, Graham M, and Rogers BA
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- COVID-19 Testing, Humans, SARS-CoV-2, COVID-19
- Abstract
Rapid detection and isolation of coronavirus disease 2019 (COVID-19) patients is the only means of reducing hospital transmission. We describe the impact of implementation of on-site severe acute respiratory coronavirus virus 2 (SARS-CoV-2) reverse-transcription polymerase chain reaction (RT-PCR) testing on reducing turnaround time, isolation duration, pathology test ordering, and antibiotic use in patients who do not have COVID-19.
- Published
- 2021
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25. How has Covid-19 changed our views of the One Health agenda?
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Francis MJ
- Subjects
- Animals, COVID-19 Vaccines, Humans, Zoonoses prevention & control, COVID-19 prevention & control, One Health
- Published
- 2021
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26. "Broken-hearted" carbon bowl via electron shuttle reaction: energetics and electron coupling.
- Author
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Leith GA, Rice AM, Yarbrough BJ, Kittikhunnatham P, Mathur A, Morris NA, Francis MJ, Berseneva AA, Dhull P, Adams RD, Bobo MV, Vannucci AA, Smith MD, Garashchuk S, and Shustova NB
- Abstract
Unprecedented one-step C[double bond, length as m-dash]C bond cleavage leading to opening of the buckybowl (π-bowl), that could provide access to carbon-rich structures with previously inaccessible topologies, is reported; highlighting the possibility to implement drastically different synthetic routes to π-bowls in contrast to conventional ones applied for polycyclic aromatic hydrocarbons. Through theoretical modeling, we evaluated the mechanistic pathways feasible for π-bowl planarization and factors that could affect such a transformation including strain and released energies. Through employment of Marcus theory, optical spectroscopy, and crystallographic analysis, we estimated the possibility of charge transfer and electron coupling between "open" corannulene and a strong electron acceptor such as 7,7,8,8-tetracyanoquinodimethane. Alternative to a one-pot solid-state corannulene "unzipping" route, we reported a nine-step solution-based approach for preparation of novel planar "open" corannulene-based derivatives in which electronic structures and photophysical profiles were estimated through the energies and isosurfaces of the frontier natural transition orbitals., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)
- Published
- 2021
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27. Spotlight on avian pathology: the importance of recombinant vector platform technologies in poultry vaccination.
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Francis MJ
- Subjects
- Animals, Communicable Diseases, Emerging pathology, Fowlpox virus genetics, Genetic Vectors, Immunity, Cellular, Immunity, Humoral, Poultry, Poultry Diseases pathology, Vaccination veterinary, Vaccines, Synthetic, Communicable Diseases, Emerging prevention & control, Eimeria immunology, Fowlpox virus immunology, Poultry Diseases prevention & control, Salmonella immunology, Vaccines administration & dosage
- Abstract
The use of novel vector vaccines (viral, bacterial and apicomplexan) can have a significant impact on the control of poultry disease. They offer a cost effective, convenient and effective means of mass vaccine delivery combined with the ability to switch on both antibody and cell-mediated immunity. In addition, recent viral vector constructs have enabled farmers to vaccinate against up to three important pathogens with a single in ovo administration. As the technology develops, it is likely that this means of vaccine administration will be utilized further and it will play a key role in the control of both existing and new emerging diseases of poultry in the future.
- Published
- 2021
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28. Increased diagnostic yield of routine multiplex PCR compared to clinician requested testing for detection of Trichomonas vaginalis.
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Webb B, Crampton A, Francis MJ, Hamblin J, Korman TM, and Graham M
- Subjects
- Adolescent, Adult, Aged, Australia epidemiology, Child, Child, Preschool, Diagnostic Tests, Routine, Female, Genes, Protozoan, Humans, Infant, Male, Middle Aged, Multiplex Polymerase Chain Reaction, Northern Territory epidemiology, Prevalence, Retrospective Studies, Rural Population, Sexually Transmitted Diseases diagnosis, Sexually Transmitted Diseases epidemiology, Trichomonas vaginalis genetics, Trichomonas Infections diagnosis, Trichomonas Infections epidemiology, Trichomonas Infections transmission, Trichomonas vaginalis isolation & purification
- Abstract
Trichomonas vaginalis (TV) infection is the leading cause of non-viral sexually transmitted infection (STI) globally and is endemic in rural and remote Australia. However, current accurate prevalence data for TV in urban Australia are scarce as TV is not a notifiable infection outside of the Northern Territory (NT). This study evaluated Australian guidelines for TV testing and determined TV prevalence among patients at a large urban public hospital in Melbourne, Australia. A retrospective analysis of genitourinary samples screened for STIs by multiplex polymerase chain reaction (MPCR) between May 2017 and April 2019 was performed. A total of 7155 results (5064 females) were included in the analysis. A prevalence for TV of 1.7% (n=123) was found, which was higher than Neisseria gonorrhoeae (1.4%, n=103) but less than Chlamydia trachomatis (5%, n=358). The highest rate of TV (3%) was found in females aged 30-44 years (n = 48). Routine MPCR improved TV detection almost six-fold compared with clinician request based testing. Current targeted testing guidelines for TV were inadequate for case finding in an urban setting, and clinical request among symptomatic patients was rare. MPCR testing provides a comprehensive testing strategy for curable STI, and removes the need for clinical suspicion of TV. Implementation of MPCR for STI screening can improve TV detection in populations not normally suspected to be at risk and therefore potentially reduce disease transmission or complications associated with undiagnosed infection., (Crown Copyright © 2020. Published by Elsevier B.V. All rights reserved.)
- Published
- 2021
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29. Incorporating patient generated health data into pharmacoepidemiological research.
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Bourke A, Dixon WG, Roddam A, Lin KJ, Hall GC, Curtis JR, van der Veer SN, Soriano-Gabarró M, Mills JK, Major JM, Verstraeten T, Francis MJ, and Bartels DB
- Subjects
- Humans, Patient Participation, Quality of Life, Patient Generated Health Data, Pharmacoepidemiology
- Abstract
Epidemiology and pharmacoepidemiology frequently employ Real-World Data (RWD) from healthcare teams to inform research. These data sources usually include signs, symptoms, tests, and treatments, but may lack important information such as the patient's diet or adherence or quality of life. By harnessing digital tools a new fount of evidence, Patient (or Citizen/Person) Generated Health Data (PGHD), is becoming more readily available. This review focusses on the advantages and considerations in using PGHD for pharmacoepidemiological research. New and corroborative types of data can be collected directly from patients using digital devices, both passively and actively. Practical issues such as patient engagement, data linking, validation, and analysis are among important considerations in the use of PGHD. In our ever increasingly patient-centric world, PGHD incorporated into more traditional Real-Word data sources offers innovative opportunities to expand our understanding of the complex factors involved in health and the safety and effectiveness of disease treatments. Pharmacoepidemiologists have a unique role in realizing the potential of PGHD by ensuring that robust methodology, governance, and analytical techniques underpin its use to generate meaningful research results., (© 2020 John Wiley & Sons Ltd.)
- Published
- 2020
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30. Clinical evaluation of AusDiagnostics SARS-CoV-2 multiplex tandem PCR assay.
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Attwood LO, Francis MJ, Hamblin J, Korman TM, Druce J, and Graham M
- Subjects
- Adult, Betacoronavirus genetics, COVID-19, COVID-19 Testing, Coronavirus Infections epidemiology, Coronavirus Infections virology, Female, Humans, Male, Middle Aged, Nasopharynx virology, Oropharynx virology, Pneumonia, Viral epidemiology, Pneumonia, Viral virology, Reproducibility of Results, SARS-CoV-2, Sensitivity and Specificity, Betacoronavirus isolation & purification, Clinical Laboratory Techniques methods, Coronavirus Infections diagnosis, Multiplex Polymerase Chain Reaction methods, Pandemics, Pneumonia, Viral diagnosis
- Abstract
Background: In the context of the pandemic, the rapid emergency use authorisation of diagnostic assays for SARS-CoV-2 has meant there are few peer-reviewed published studies of clinical performance of commercial assays., Aims: To evaluate the clinical performance of AusDiagnostics respiratory multiplex tandem PCR assay including SARS-CoV-2., Methods: We reviewed the results following implementation of AusDiagnostics respiratory multiplex tandem PCR assay including SARS-CoV-2, and compared with an in-house RT-PCR assay at our State Reference Laboratory., Results: Initial validation using AusDiagnostics coronavirus multiplex tandem PCR assay including SARS-CoV-2 demonstrated good concordance with the State Reference Laboratory. After implementing the AusDiagnostics respiratory multiplex tandem PCR assay including SARS-CoV-2, we tested 7839 samples. 127 samples in which SARS-CoV-2 was detected using the AusDiagnostics assay were referred for testing at the State Reference Laboratory, with concordant results in 118/127 (92.9%) of samples. After resolution of discrepancies, 125/127 (98.4%) of AusDiagnostics results were determined to be true positive results. Out of 7839 samples tested for SARS-CoV-2 during this period, only 2 tests (0.02%) were indeterminate results., Conclusion: The AusDiagnostics respiratory MT-PCR assay is a reliable assay for detection of SARS-CoV-2., (Crown Copyright © 2020. Published by Elsevier B.V. All rights reserved.)
- Published
- 2020
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31. A Veterinary Vaccine Development Process Map to assist in the development of new vaccines.
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Francis MJ
- Subjects
- Animals, COVID-19, Coronavirus Infections immunology, Humans, Pneumonia, Viral immunology, SARS-CoV-2, Vaccines immunology, Betacoronavirus immunology, Coronavirus Infections prevention & control, Coronavirus Infections veterinary, Pandemics prevention & control, Pandemics veterinary, Pneumonia, Viral prevention & control, Pneumonia, Viral veterinary, Vaccination veterinary
- Abstract
The UK Government recognised the importance of vaccines in the control of new emerging disease threats and in 2015 established the UK Vaccine Network to focus on specific areas of need. One of these was the understanding of what is involved in the development of a new vaccine and what are the potential bottlenecks to a rapid response in the face of an epidemic such as Ebola, MERS and more recently COVID-19. A Working Group was established to initially produce a Vaccine Development Process Map for a Human Vaccine. However, in view of the importance of animal wellbeing and the significant impact of diseases with Zoonotic potential, a similar Map has been created outlining the Veterinary Vaccine Development Process. This paper describes the production of that Map and covers the process from the generation of a Target Product Profile (TPP) through Discovery and Feasibility, and on to Product Development and Registration., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Crown Copyright © 2020. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2020
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32. Cotton fever resulting in Enterobacter asburiae endocarditis.
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Francis MJ, Chin J, Lomiguen CM, and Glaser A
- Abstract
"Cotton fever" is described as a self-limiting illness following "cotton shooting," the practice of injecting residual drugs extracted from previously used cotton filters. Cases of related Enterobacter agglomerans bacteremia have been described. We report the first described case of cotton fever in a patient resulting in Enterobacter asburiae endocarditis., Competing Interests: The authors disclose that there were no conflicts of interest or financial support in the development of this project., (© 2019 The Authors.)
- Published
- 2019
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33. Safety and efficacy of ChAdOx1 RVF vaccine against Rift Valley fever in pregnant sheep and goats.
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Stedman A, Wright D, Wichgers Schreur PJ, Clark MHA, Hill AVS, Gilbert SC, Francis MJ, van Keulen L, Kortekaas J, Charleston B, and Warimwe GM
- Abstract
Rift Valley fever virus (RVFV) is a zoonotic mosquito-borne virus that was first discovered in Kenya in 1930 and has since spread to become endemic in much of Africa and the Arabian Peninsula. Rift Valley fever (RVF) causes recurrent outbreaks of febrile illness associated with high levels of mortality and poor outcomes during pregnancy-including foetal malformations, spontaneous abortion and stillbirths-in livestock, and associated with miscarriage in humans. No vaccines are available for human use and those licensed for veterinary use have potential drawbacks, including residual virulence that may contraindicate their use in pregnancy. To address this gap, we previously developed a simian adenovirus vectored vaccine, ChAdOx1 RVF, that encodes RVFV envelope glycoproteins. ChAdOx1 RVF is fully protective against RVF in non-pregnant livestock and is also under development for human use. Here, we now demonstrate that when administered to pregnant sheep and goats, ChAdOx1 RVF is safe, elicits high titre RVFV neutralizing antibody, and provides protection against viraemia and foetal loss, although this protection is not as robust for the goats. In addition, we provide a description of RVFV challenge in pregnant goats and contrast this to the pathology observed in pregnant sheep. Together, our data further support the ongoing development of ChAdOx1 RVF vaccine for use in livestock and humans., Competing Interests: Competing interestsS.C.G. and A.V.S.H. are co-founders of, consultants to and shareholders in Vaccitech Ltd., which is developing ChAdOx1-vectored vaccines. The remaining authors declare no competing interests., (© The Author(s) 2019.)
- Published
- 2019
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34. Testing the Usability of a Software for Geospatial and Transport Modeling in Acute Stroke Service Planning.
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Holodinsky JK, Francis MJ, Goyal M, Hill MD, and Kamal N
- Abstract
Introduction: Geographic visualizations have been used to understand disease since the nineteenth century. We developed a software that creates simple visualizations which can be used as a decision support tool for pre-hospital acute stroke transportation planning. In this study, we test the usability of this software to improve user experience and assess the interpretability of the visualizations it produces as it relates to planning and optimizing stroke systems of care. Materials and Methods: Healthcare practitioners and administrators working within the acute stroke system in Alberta, Canada were invited to participate. Participants were randomized to either the geographic visualization or 2-D temporospatial diagrams. Using a standardized script participants were asked to complete tasks and interpret the visualizations produced by the software. The computer screen and audio were recorded. Recordings were transcribed verbatim and analyzed using inductive thematic analyses. The number of errors made and time to task completion were also analyzed. Results: Eighteen participants (8 physicians, 5 healthcare administrators, 3 paramedics, and 2 nurses) were enrolled. Mean age was 41.22 years (SD: 10.55) and 8 participants were female. It took users a mean of 1.59 min (SD: 0.71) to complete all 10 tasks for the geographic visualizations and a mean of 1.08 min (SD: 0.33) to complete all 15 tasks for the 2-D temporospatial diagrams. Map users made a median of 2 errors (IQR: 4), 2-D temporospatial diagram users also made a median of 2 errors (IQR: 1.5). All but one map user correctly interpreted all maps, only three of the eight 2-D temporospatial diagram correctly interpreted all diagrams. In the qualitative analysis three common themes were identified: comments on the user interface, comments on the visualization tool(s), and suggestions for improvement. Most study participants mentioned that the software would be useful in their work. Conclusions: Healthcare professional from several different aspects of stroke care see geographic visualizations in transport decision making to be a useful tool. The software demonstrated high usability. However, several suggestions were made to improve user experience as well as additional features which could be developed and become the subject of future studies.
- Published
- 2019
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35. Modeling Stroke Patient Transport for All Patients With Suspected Large-Vessel Occlusion.
- Author
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Holodinsky JK, Williamson TS, Demchuk AM, Zhao H, Zhu L, Francis MJ, Goyal M, Hill MD, and Kamal N
- Subjects
- Arterial Occlusive Diseases diagnosis, Brain Ischemia diagnosis, Cerebral Arterial Diseases diagnosis, Humans, Models, Theoretical, Stroke diagnosis, Time Factors, Arterial Occlusive Diseases therapy, Brain Ischemia therapy, Cerebral Arterial Diseases therapy, Endovascular Procedures standards, Outcome and Process Assessment, Health Care statistics & numerical data, Stroke therapy, Thrombolytic Therapy standards, Transportation of Patients standards, Triage standards
- Abstract
Importance: Ischemic stroke with large-vessel occlusion can be treated with alteplase and/or endovascular therapy; however, the administration of each treatment is time sensitive., Objective: To identify the optimal triage and transport strategy: direct to the endovascular center (mothership) or immediate alteplase treatment followed by transfer to the endovascular center (drip and ship), for all patients with suspected large-vessel occlusion stroke., Design Setting, and Participants: This was a theoretical, conditional probability modeling study. Existing data from clinical trials of stroke treatment were used for model generation. The study was conducted from February 1, 2017, to March 1, 2018., Main Outcomes and Measures: The time-dependent efficacy of alteplase and endovascular therapy and the accuracy of large-vessel occlusion screening tools were modeled to estimate the probability of positive outcome (modified Rankin Scale score, 0-1 at 90 days) for both the drip-and-ship and mothership transport strategies. Based from onset to treatment, the strategy that estimates the greatest probability of excellent outcome is determined in several different scenarios., Results: The patient's travel time from both thrombolysis and endovascular therapy centers, speed of treatment, and positive predictive value of the screening tool affect whether the drip-and-ship or mothership strategy estimates best outcomes. With optimal treatment times (door-to-needle time: 30 minutes; door-in-door-out time: 50 minutes; door-to-groin-puncture time: 60 minutes [mothership], 30 minutes [drip and ship]), both options estimate similar outcomes when the centers are 60 minutes or less apart. However, with increasing travel time between the 2 centers (90 or 120 minutes), drip and ship is favored if the patient would have to travel past the thrombolysis center to reach the endovascular therapy center or if the patient would arrive outside the alteplase treatment time window in the mothership scenario. Holding other variables constant, if treatment times are slow at the thrombolysis center (door-to-needle time: 60 minutes; door-in-door-out time: 120 minutes), the area where mothership estimates the best outcomes expands, especially when the 2 centers are close together (60 minutes apart or less). The area where mothership estimates the best outcome also expands as the positive predictive value of the screening tool increases., Conclusions and Relevance: This study suggests that decision making for prehospital transport can be modeled using existing clinical trial data and that these models can be dynamically adapted to changing realities. Based on current median treatment times to realize the full benefit of endovascular therapy on a population level, the study findings suggest that delivery of the treatment should be regionally centralized. The study modeling suggests that transport decision making is context specific and the radius of superiority of the transport strategy changes based on treatment times at both centers, transport times, and the triaging tool used.
- Published
- 2018
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36. Respiratory virus detection and co-infection in children and adults in a large Australian hospital in 2009-2015.
- Author
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Ching NS, Kotsanas D, Easton ML, Francis MJ, Korman TM, and Buttery JP
- Subjects
- Adolescent, Humans, Multiplex Polymerase Chain Reaction, Prevalence, Respiratory Tract Infections epidemiology, Retrospective Studies, Victoria epidemiology, Young Adult, Coinfection epidemiology, Hospitals, Pediatric, Respiratory Tract Infections diagnosis, Viruses isolation & purification
- Abstract
Aim: This hospital network-based retrospective observational study aimed to describe the prevalence and seasonality of paediatric and adult viral respiratory pathogens and their rates of co-infections, following the introduction of a rapid multiplex molecular diagnostic assay., Methods: All nasopharyngeal samples tested in patients presenting to Monash Health, Melbourne, Australia, from August 2009 to July 2015 by means of multiplex tandem polymerase chain reaction using the Respiratory Pathogen 12Plex kit (AusDiagnostics) were included in the analysis., Results: There were 28 729 patient samples analysed after duplicate samples were excluded. Positive results were twice as likely in paediatrics, 7573/11 491 (65.9%), compared to adults, 5410/17 238 (31.4%). Co-infection was more frequent in paediatrics, 1642/7573 (21.7% of positives), compared to adults 299/5410 (5.5%). Adenovirus had a high prevalence as a co-infection, 639/990 (64.5%), in paediatrics. Testing frequency increased by 179% in the paediatric group and by 949% for adults over the 6 years of observation., Conclusions: This study demonstrated a significant difference in the positive detection rate of pathogens and co-infections between the population groups. Adenovirus had a surprisingly high prevalence as a co-infection, especially in paediatric patients. Over the study period, rapid uptake of the test was observed, especially in adults. This raises concerns about how we can ensure that testing remains rational and is able to be provided in a cost-effective manner in the future., (© 2018 Paediatrics and Child Health Division (The Royal Australasian College of Physicians).)
- Published
- 2018
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37. Identification and diversity of Actinomyces species in a clinical microbiology laboratory in the MALDI-TOF MS era.
- Author
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Fong P, Francis MJ, Hamblin JF, Korman TM, and Graham M
- Subjects
- Actinomyces classification, Actinomyces genetics, Actinomycosis diagnosis, DNA, Bacterial genetics, Humans, Laboratories, RNA, Ribosomal, 16S genetics, Actinomyces isolation & purification, Actinomycosis microbiology, Bacterial Typing Techniques methods, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization methods
- Abstract
Matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) has emerged as a reliable tool for bacterial identification. This study compared the Bruker MALDI-TOF BioTyper MS (MBT) and 16S rRNA gene sequencing for the identification of Actinomyces and Actinotignum spp. The MBT identified 68/77 (88.3%) of Actinomyces isolates to the genus-level and 44/77 (57.1%) of Actinomyces isolates to the species-level using the manufacturer's identification criteria. The MBT did not yield reliable identification for only 1/77 (1.3%) and generated no identification for 8/77 (10.4%) of the isolates. No misidentifications were found. Discordance at the species level was observed for eight isolates. Overall, the MBT demonstrated good concordance with the 16S rRNA gene sequencing with the exception of the closely related species A. naeslundii, A. viscosus and A. oris. A variety of Actinomyces spp. were isolated from orocervicofacial/dental specimens, but only a limited number of species were isolated from urine or intra-abdominal specimens. This study confirms the utility of MBT in the identification of Actinomyces spp. and describes the diversity and anatomic niche of species in human clinical specimens from various body sites., (Copyright © 2018 Elsevier Ltd. All rights reserved.)
- Published
- 2018
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38. Recent Advances in Vaccine Technologies.
- Author
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Francis MJ
- Subjects
- Animals, Bacteria, Eimeria immunology, Plant Cells, Vaccination methods, Vaccines, DNA pharmacology, Yeasts, Vaccination veterinary, Vaccines pharmacology
- Abstract
This brief review discusses some recent advances in vaccine technologies with particular reference to their application within veterinary medicine. It highlights some of the key inactivated/killed approaches to vaccination, including natural split-product and subunit vaccines, recombinant subunit and protein vaccines, and peptide vaccines. It also covers live/attenuated vaccine strategies, including modified live marker/differentiating infected from vaccinated animals vaccines, live vector vaccines, and nucleic acid vaccines., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2018
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39. Creating a Role for Embedded Librarians Within an Active Learning Environment.
- Author
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Hackman DE, Francis MJ, Johnson E, Nickum A, and Thormodson K
- Subjects
- Humans, Problem-Based Learning, United States, Academic Medical Centers organization & administration, Librarians, Libraries, Medical organization & administration, Professional Role
- Abstract
In 2013, the librarians at a small academic health sciences library reevaluated their mission, vision, and strategic plan to expand their roles. The school was transitioning to a new pedagogical culture and a new building designed to emphasize interprofessional education and active learning methodologies. Subsequent efforts to implement the new strategic plan resulted in the librarians joining curriculum committees and other institutional initiatives, such as an Active Learning Task Force, and participating in faculty development workshops. This participation has increased visibility and led to new roles and opportunities for librarians.
- Published
- 2017
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40. Bacteroides pyogenes causing serious human wound infection from animal bites.
- Author
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Lau JSY, Korman TM, Yeung A, Streitberg R, Francis MJ, and Graham M
- Subjects
- Aged, Animals, Anti-Bacterial Agents therapeutic use, Bacteremia drug therapy, Bacteremia pathology, Bacteremia surgery, Bacterial Typing Techniques, Bacteroides drug effects, Bacteroides genetics, Bacteroides isolation & purification, Bacteroides Infections drug therapy, Bacteroides Infections pathology, Bacteroides Infections surgery, Bites and Stings drug therapy, Bites and Stings pathology, Bites and Stings surgery, Cats, Child, Dogs, Female, Humans, Male, Middle Aged, Sequence Analysis, DNA, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Wound Infection drug therapy, Wound Infection pathology, Wound Infection surgery, Bacteremia microbiology, Bacteroides pathogenicity, Bacteroides Infections microbiology, Bites and Stings microbiology, RNA, Ribosomal, 16S genetics, Wound Infection microbiology
- Abstract
Bacteroides pyogenes is part of the normal oral flora of domestic animals. There is one previous report of human infection, with B. pyogenes bacteremia following a cat bite (Madsen 2011). We report seven severe human infections where B. pyogenes was identified by Bruker matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDTI-TOF MS), but not by VITEK MS and was misidentified by VITEK ANC card., (Crown Copyright © 2016. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2016
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41. Drosophila IRBP bZIP heterodimer binds P-element DNA and affects hybrid dysgenesis.
- Author
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Francis MJ, Roche S, Cho MJ, Beall E, Min B, Panganiban RP, and Rio DC
- Subjects
- Animals, DNA metabolism, DNA Damage, DNA Repair, Drosophila genetics, Drosophila metabolism, Mutation, Protein Multimerization, DNA Transposable Elements, DNA-Binding Proteins genetics, DNA-Binding Proteins metabolism, Drosophila Proteins genetics, Drosophila Proteins metabolism, Nuclear Proteins genetics, Nuclear Proteins metabolism
- Abstract
In Drosophila, P-element transposition causes mutagenesis and genome instability during hybrid dysgenesis. The P-element 31-bp terminal inverted repeats (TIRs) contain sequences essential for transposase cleavage and have been implicated in DNA repair via protein-DNA interactions with cellular proteins. The identity and function of these cellular proteins were unknown. Biochemical characterization of proteins that bind the TIRs identified a heterodimeric basic leucine zipper (bZIP) complex between an uncharacterized protein that we termed "Inverted Repeat Binding Protein (IRBP) 18" and its partner Xrp1. The reconstituted IRBP18/Xrp1 heterodimer binds sequence-specifically to its dsDNA-binding site within the P-element TIRs. Genetic analyses implicate both proteins as critical for repair of DNA breaks following transposase cleavage in vivo. These results identify a cellular protein complex that binds an active mobile element and plays a more general role in maintaining genome stability., Competing Interests: The authors declare no conflict of interest.
- Published
- 2016
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42. Thermotolerance of an inactivated rabies vaccine for dogs.
- Author
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Lankester FJ, Wouters PAWM, Czupryna A, Palmer GH, Mzimbiri I, Cleaveland S, Francis MJ, Sutton DJ, and Sonnemans DGP
- Subjects
- Animals, Antibodies, Neutralizing blood, Antibodies, Viral blood, Antibodies, Viral immunology, Dogs, Drug Storage, Hot Temperature, Rabies prevention & control, Rabies Vaccines administration & dosage, Rabies virus immunology, Tanzania, Thermotolerance, Vaccination veterinary, Vaccines, Inactivated administration & dosage, Vaccines, Inactivated immunology, Antibodies, Neutralizing immunology, Dog Diseases prevention & control, Rabies veterinary, Rabies Vaccines immunology, Vaccine Potency
- Abstract
This study provides the first robust data that the antibody response of dogs vaccinated with Nobivac® Rabies vaccine stored for several months at high temperatures (up to 30°C) is not inferior to that of dogs vaccinated with vaccine stored under recommended cold-chain conditions (2-8°C). A controlled and randomized non-inferiority study was carried out comparing the four-week post vaccination serological responses of Tanzanian village dogs inoculated with vaccine which had been stored at elevated temperatures for different periods of time with those of dogs vaccinated with the same product stored according to label recommendations. Specifically, the neutralizing antibody response following the use of vaccine which had been stored for up to six months at 25°C or for three months at 30°C was not inferior to that following the use of cold-chain stored vaccine. These findings provide reassurance that the vaccine is likely to remain efficacious even if exposed to elevated temperatures for limited periods of time and, under these circumstances, it can safely be used and not necessarily destroyed or discarded. The availability of thermotolerant vaccines has been an important factor in the success of several disease control and elimination programs and could greatly increase the capacity of rabies vaccination campaigns to access hard to reach communities in Africa and Asia. We have not confirmed a 3-year duration of immunity for the high temperature stored vaccine, however because annual re-vaccination is usually practiced for dogs presented for vaccination during campaigns in Africa and Asia this should not be a cause for concern. These findings will provide confidence that, for rabies control and elimination programs using this vaccine in low-income settings, more flexible delivery models could be explored, including those that involve limited periods of transportation and storage at temperatures higher than that currently recommended., (Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2016
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43. Human Wound Infection with Mannheimia glucosida following Lamb Bite.
- Author
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Lau JS, Omaleki L, Turni C, Barber SR, Browning GF, Francis MJ, Graham M, and Korman TM
- Subjects
- Animals, Bacterial Proteins genetics, DNA, Bacterial chemistry, DNA, Bacterial genetics, DNA, Ribosomal chemistry, DNA, Ribosomal genetics, DNA-Directed RNA Polymerases genetics, Hemolysin Proteins genetics, Humans, Male, Mannheimia classification, Mannheimia genetics, Middle Aged, Molecular Sequence Data, Pasteurellaceae Infections microbiology, RNA, Ribosomal, 16S genetics, Sequence Analysis, DNA, Sheep, Wound Infection microbiology, Bites and Stings complications, Mannheimia isolation & purification, Pasteurellaceae Infections diagnosis, Pasteurellaceae Infections pathology, Wound Infection diagnosis, Wound Infection pathology
- Abstract
Mannheimia spp. are veterinary pathogens that can cause mastitis and pneumonia in domestic cattle and sheep. While Mannheimia glucosida can be found as normal flora in oral and respiratory mucosa in sheep, there have been no reported cases of human infection with this organism., (Copyright © 2015, American Society for Microbiology. All Rights Reserved.)
- Published
- 2015
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44. Acanthamoeba encephalitis: isolation of genotype T1 in mycobacterial liquid culture medium.
- Author
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Azzam R, Badenoch PR, Francis MJ, Fernandez C, Adamson PJ, Dendle C, Woolley I, Robson J, Korman TM, and Graham M
- Subjects
- Acanthamoeba genetics, Aged, Biopsy, Brain diagnostic imaging, Brain pathology, Central Nervous System Protozoal Infections parasitology, DNA, Protozoan chemistry, DNA, Protozoan genetics, Histocytochemistry, Humans, Magnetic Resonance Imaging, Male, Microbiological Techniques, Microscopy, Molecular Sequence Data, Radiography, Sequence Analysis, DNA, Acanthamoeba classification, Acanthamoeba isolation & purification, Brain parasitology, Central Nervous System Protozoal Infections diagnosis, Genotype
- Abstract
We report a case of Acanthamoeba encephalitis diagnosed from an antemortem brain biopsy specimen, where the organism was first isolated in mycobacterial liquid medium and first identified by using a sequence generated by a commercial panfungal sequencing assay. We correlate susceptibility results with clinical outcome., (Copyright © 2015, American Society for Microbiology. All Rights Reserved.)
- Published
- 2015
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45. Clinical and microbiological characteristics of Eggerthella lenta bacteremia.
- Author
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Gardiner BJ, Tai AY, Kotsanas D, Francis MJ, Roberts SA, Ballard SA, Junckerstorff RK, and Korman TM
- Subjects
- Actinobacteria chemistry, Actinobacteria classification, Actinobacteria genetics, Adolescent, Adult, Aged, Aged, 80 and over, Anti-Bacterial Agents pharmacology, Anti-Bacterial Agents therapeutic use, Bacteremia drug therapy, Bacteremia mortality, Child, Female, Genes, Bacterial, Gram-Positive Bacterial Infections drug therapy, Gram-Positive Bacterial Infections mortality, Humans, Male, Microbial Sensitivity Tests, Middle Aged, Retrospective Studies, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Survival Analysis, Treatment Outcome, Young Adult, Actinobacteria isolation & purification, Bacteremia microbiology, Bacteremia pathology, Gram-Positive Bacterial Infections microbiology, Gram-Positive Bacterial Infections pathology
- Abstract
Eggerthella lenta is an emerging pathogen that has been underrecognized due to historical difficulties with phenotypic identification. Until now, its pathogenicity, antimicrobial susceptibility profile, and optimal treatment have been poorly characterized. In this article, we report the largest cohort of patients with E. lenta bacteremia to date and describe in detail their clinical features, microbiologic characteristics, treatment, and outcomes. We identified 33 patients; the median age was 68 years, and there was no gender predominance. Twenty-seven patients (82%) had serious intra-abdominal pathology, often requiring a medical procedure. Of those who received antibiotics (28/33, 85%), the median duration of treatment was 21.5 days. Mortality from all causes was 6% at 7 days, 12% at 30 days, and 33% at 1 year. Of 26 isolates available for further testing, all were identified as E. lenta by both commercially available matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) systems, and none were found to harbor a vanA or vanB gene. Of 23 isolates which underwent susceptibility testing, all were susceptible to amoxicillin-clavulanate, cefoxitin, metronidazole, piperacillin-tazobactam, ertapenem, and meropenem, 91% were susceptible to clindamycin, 74% were susceptible to moxifloxacin, and 39% were susceptible to penicillin., (Copyright © 2015, American Society for Microbiology. All Rights Reserved.)
- Published
- 2015
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46. Comparing the identification of Clostridium spp. by two Matrix-Assisted Laser Desorption Ionization-Time of Flight (MALDI-TOF) mass spectrometry platforms to 16S rRNA PCR sequencing as a reference standard: a detailed analysis of age of culture and sample preparation.
- Author
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Chean R, Kotsanas D, Francis MJ, Palombo EA, Jadhav SR, Awad MM, Lyras D, Korman TM, and Jenkin GA
- Subjects
- Bacteremia diagnosis, Bacteremia microbiology, Clostridium chemistry, Clostridium Infections diagnosis, Cluster Analysis, DNA, Bacterial chemistry, DNA, Bacterial genetics, DNA, Ribosomal chemistry, DNA, Ribosomal genetics, Humans, Molecular Sequence Data, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S genetics, Reference Standards, Sequence Analysis, DNA, Specimen Handling methods, Bacteriological Techniques methods, Clostridium classification, Clostridium isolation & purification, Clostridium Infections microbiology, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization methods
- Abstract
We compared the identification of Clostridium species using mass spectrometry by two different Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF MS) platforms (Bruker MS and Vitek MS) against 16S rRNA sequencing as the reference standard. We then examined the impact of different sample preparations and (on one of those platforms) age of bacterial colonial growth on the performance of the MALDI-TOF MS systems. We identified 10 different species amongst the 52 isolates by 16S rRNA sequencing, with Clostridium perfringens the most prevalent (n=30). Spectrometric analysis using Vitek MS correctly speciated 47/52 (90.4%) isolates and was not affected by the sample preparation used. Performance of the Bruker MS was dependent on sample preparation with correct speciation obtained for 36 of 52 (69.2%) isolates tested using the Direct Transfer [DT] protocol, but all 52 (100%) isolates were correctly speciated using either an Extended Direct Transfer [EDT] or a Full Formic Extraction [EX] protocol. We then examined the effect of bacterial colonial growth age on the performance of Bruker MS and found substantial agreement in speciation using DT (Kappa=0.62, 95% CI: 0.46-0.75), almost perfect agreement for EDT (Kappa=0.94, 95% CI: 0.86-1.00) and exact agreement for EX (Kappa=1.00) between different days., (Copyright © 2014 Elsevier Ltd. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
47. Emergence of a ribotype 244 strain of Clostridium difficile associated with severe disease and related to the epidemic ribotype 027 strain.
- Author
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Lim SK, Stuart RL, Mackin KE, Carter GP, Kotsanas D, Francis MJ, Easton M, Dimovski K, Elliott B, Riley TV, Hogg G, Paul E, Korman TM, Seemann T, Stinear TP, Lyras D, and Jenkin GA
- Subjects
- Adult, Aged, Aged, 80 and over, Bacterial Proteins genetics, Bacterial Toxins genetics, Female, Frameshift Mutation, Genome, Bacterial, Humans, Male, Middle Aged, Phylogeny, Polymorphism, Single Nucleotide, Repressor Proteins genetics, Retrospective Studies, Ribotyping, Severity of Illness Index, Clostridioides difficile genetics, Communicable Diseases, Emerging epidemiology, Communicable Diseases, Emerging microbiology, Disease Outbreaks, Enterocolitis, Pseudomembranous epidemiology, Enterocolitis, Pseudomembranous microbiology
- Abstract
Background: We identified 12 patients with Clostridium difficile infection between July 2011 and March 2012 from whom an unusual C. difficile strain was isolated. This strain had a single-nucleotide deletion of the tcdC gene at position 117 and binary toxin genes, which are characteristic of the hypervirulent ribotype (RT) 027 strain., Methods: A retrospective cohort study of 12 patients infected with C. difficile RT244 and 24 patients infected with non-RT244/non-RT027 strains matched for place of diagnosis and time of collection of specimen was performed. We performed whole-genome sequencing to understand the relationship of the RT244 strain to other C. difficile strains and further understand its virulence potential., Results: Clostridium difficile RT244 was associated with more severe disease and a higher mortality rate. Phylogenomic analysis using core genome single-nucleotide polymorphisms showed that RT244 is in the same genetic clade (clade 2) as RT027 but is distinct from all RT027 strains. The pathogenicity locus of the RT244 strain encodes a variant toxin B, and this was confirmed by demonstration of Clostridium sordellii-like cytopathic effect on Vero cells. Toxin B production in culture supernatants was lower than that seen with a RT027 strain., Conclusions: Our findings demonstrate the pathogenic potential of this RT244 C. difficile strain and emphasize the importance of ongoing surveillance for emergent strains., (© The Author 2014. Published by Oxford University Press on behalf of the Infectious Diseases Society of America. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2014
- Full Text
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48. Impact of an intensive follow-up program on the postpartum glucose tolerance testing rate.
- Author
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Mendez-Figueroa H, Daley J, Breault P, Lopes VV, Paine V, Goldman D, Francis MJ, Delgado B, and Coustan DR
- Subjects
- Adult, Age Factors, Case-Control Studies, Community Health Workers, Diabetes Mellitus diagnosis, Female, Follow-Up Studies, Humans, New England epidemiology, Nursing Staff, Hospital, Outpatient Clinics, Hospital, Postpartum Period, Prediabetic State diagnosis, Pregnancy, Program Evaluation, Proportional Hazards Models, Retrospective Studies, Single Parent, Smoking epidemiology, Continuity of Patient Care, Diabetes, Gestational epidemiology, Glucose Tolerance Test, Patient Compliance statistics & numerical data
- Abstract
Objective: Gestational diabetes mellitus (GDM) is a strong risk factor for the development of diabetes. We assessed the impact of a 1-year intensive follow-up demonstration program, using direct nurse and outreach worker case management, aimed at increasing compliance with postpartum oral glucose tolerance testing (OGTT)., Study Design: During the year of implementation, a nurse or bilingual outreach worker contacted patients to encourage attendance at their scheduled postpartum 2-h 75-g OGTT and assisted in overcoming obstacles to testing. All patients with GDM seen in our specialty clinic the previous year served as a control group for comparison., Results: One hundred eighty-one patients treated during the year prior to implementation were compared to the 207 in the demonstration program. Baseline characteristics were similar in both groups. After the program's implementation, postpartum OGTT adherence increased from 43.1 to 59.4 % (p < 0.01, hazard ratio 1.59; 95 % confidence interval 1.20-2.12). Had the program been in place the previous year, we calculated that 12 additional cases of diabetes or prediabetes would have been detected, increasing the total number from 33 to 45 such cases., Conclusion: Implementation of direct nurse and outreach worker case management leads to a modest, but important increase in adherence to postpartum OGTT testing.
- Published
- 2014
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49. Rat bite fever as a presenting illness in a patient with AIDS.
- Author
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Chean R, Stefanski DA, Woolley IJ, Francis MJ, and Korman TM
- Subjects
- Adult, Animals, Arthritis, Infectious diagnosis, Arthritis, Infectious microbiology, Humans, Male, Rat-Bite Fever diagnosis, Rat-Bite Fever transmission, Rats, Treatment Outcome, Acquired Immunodeficiency Syndrome complications, Anti-Bacterial Agents therapeutic use, Arthritis, Infectious drug therapy, Doxycycline therapeutic use, Penicillin G therapeutic use, Rat-Bite Fever drug therapy, Streptobacillus isolation & purification
- Abstract
The etiology of culture-negative septic arthritis is poorly characterised in persons infected with human immunodeficiency virus (HIV). New molecular methods may assist in the investigation of culture-negative infections of sterile sites, including septic arthritis. We describe the first case of septic arthritis due to the cause of rat bite fever (RBF), Streptobacillus moniliformis, confirmed by 16S rRNA sequence analysis, in a patient with newly diagnosed HIV infection.
- Published
- 2012
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50. Eimeria species parasites as novel vaccine delivery vectors: anti-Campylobacter jejuni protective immunity induced by Eimeria tenella-delivered CjaA.
- Author
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Clark JD, Oakes RD, Redhead K, Crouch CF, Francis MJ, Tomley FM, and Blake DP
- Subjects
- ATP-Binding Cassette Transporters genetics, Amino Acid Transport Systems, Neutral genetics, Animals, Bacterial Vaccines immunology, Campylobacter Infections immunology, Campylobacter Infections prevention & control, Campylobacter jejuni immunology, Eimeria tenella immunology, Electroporation, Genes, Reporter, Genetic Vectors genetics, Genetic Vectors immunology, Immunity, Active, Oocysts immunology, Organisms, Genetically Modified genetics, Organisms, Genetically Modified immunology, Poultry Diseases immunology, Transfection, Vaccination veterinary, ATP-Binding Cassette Transporters immunology, Amino Acid Transport Systems, Neutral immunology, Bacterial Vaccines genetics, Campylobacter Infections veterinary, Chickens, Eimeria tenella genetics, Gene Transfer Techniques, Poultry Diseases prevention & control
- Abstract
Vaccination of poultry against coccidiosis caused by the Eimeria species is almost entirely based upon varied formulations of live parasites. The recent development of a series of protocols that support genetic complementation by transfection in Eimeria now provides an opportunity to utilise live anticoccidial vaccines to deliver additional vaccinal antigens. The capacity of Eimeria tenella to express an exogenous antigen and induce an immune response during in vivo infection which is protective against subsequent bacterial challenge has been tested here using the anti-Campylobacter jejuni vaccine candidate CjaA. Using restriction enzyme mediated integration (REMI) a transgenic E. tenella population expressing CjaA and the fluorescent reporter mCitrine has been developed. Vaccination of specific pathogen free chickens by single or multiple oral inoculation of E. tenella-CjaA oocysts induced 91% and 86% immune protection against C. jejuni challenge compared with unvaccinated and wild-type E. tenella vaccinated controls (p<0.001). Increasing vaccination number had no significant influence on the magnitude of protection. These results support the hypothesis that eimerian parasites can be developed as multivalent vaccine vectors and encourage the extension of these studies., (Copyright © 2012 Elsevier Ltd. All rights reserved.)
- Published
- 2012
- Full Text
- View/download PDF
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