1. fluxfinder: An R Package for Reproducible Calculation and Initial Processing of Greenhouse Gas Fluxes From Static Chamber Measurements.
- Author
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Wilson, Stephanie J., Bond‐Lamberty, Ben, Noyce, Genevieve, Bittencourt Peixoto, Roberta, and Megonigal, J. Patrick
- Subjects
GREENHOUSE gases ,CLIMATE change ,CARBON dioxide ,OPEN scholarship ,INFORMATION measurement - Abstract
Fluxes of greenhouse gases are a critical component of the earth's natural climate, but anthropogenic emissions have created an imbalance and resulted in global climate change. Quantifying the emission of these gases is vital to our understanding of their sources and sinks, both natural and anthropogenic. The static chamber method, in which a system of interest is enclosed, and gas concentrations are measured over time, is widely used to estimate fluxes of greenhouse gases. With the development of instruments such as infrared gas analyzers (IRGAs) supporting high‐frequency concentration data, there is a growing need for open‐source workflows to calculate fluxes. Here we present fluxfinder, an R package designed to support reproducible calculations and processing of greenhouse gas fluxes measured with the static chamber method. The package includes raw data file parsing from widely used IRGAs, metadata matching, unit conversion, flux estimations, and initial quality assurance/quality control (QA/QC). Diagnostic graphical plots provide a transparent way to differentiate between measurement issues and nonlinear behavior. The package is also designed to be easily integrated with the gasfluxes package for further fitting of nonlinear concentration‐time models, allowing alternative or additional flux QA/QC. The fluxfinder package offers a flexible workflow that is easily adaptable to promote open and reproducible greenhouse gas flux estimations. Plain Language Summary: Measuring and understanding climate‐changing "greenhouse gases" such as carbon dioxide is an active area of research. New greenhouse gas analyzer technology produces large volumes of gas concentration data and can complicate estimations of greenhouse gas release over time, referred to as the flux. Here we describe an open source package, fluxfinder, which is designed to support the calculation of greenhouse gas fluxes from chamber measurements. The fluxfinder allows users to parse raw data files from greenhouse gas analyzers, match that data to sample or measurement information, convert units, and make calculations with associated statistics for quality assessment. The package is versatile, widely applicable, allows for adaptable workflows, and is extensively documented to promote open and reproducible calculations of greenhouse gas fluxes. Key Points: fluxfinder is a highly adaptable R package designed to calculate greenhouse gas fluxesThe package allows users to parse gas analyzer data files, match data and metadata, compute fluxes, and generate QA/QC plots and diagnosticsfluxfinder integrates easily into flux calculation workflows and promotes reproducible, open science [ABSTRACT FROM AUTHOR]
- Published
- 2024
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