167 results on '"Florian Weinberger"'
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2. Piezo2 is not an indispensable mechanosensor in murine cardiomyocytes
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Benjamin Kloth, Giulia Mearini, Florian Weinberger, Justus Stenzig, Birgit Geertz, Jutta Starbatty, Diana Lindner, Udo Schumacher, Hermann Reichenspurner, Thomas Eschenhagen, and Marc N. Hirt
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Medicine ,Science - Abstract
Abstract A short-term increase in ventricular filling leads to an immediate (Frank-Starling mechanism) and a slower (Anrep effect) rise in cardiac contractility, while long-term increased cardiac load (e.g., in arterial hypertension) decreases contractility. Whether these answers to mechanical tension are mediated by specific sensors in cardiomyocytes remains elusive. In this study, the piezo2 protein was evaluated as a potential mechanosensor. Piezo2 was found to be upregulated in various rat and mouse cardiac tissues upon mechanical or pharmacological stress. To investigate its function, C57BL/6J mice with homozygous cardiomyocyte-specific piezo2 knockout [Piezo2-KO] were created. To this end, α-MHC-Cre mice were crossed with homozygous “floxed” piezo2 mice. α-MHC-Cre mice crossed with wildtype mice served as controls [WT-Cre+]. In cardiomyocytes of Piezo2-KO mice, piezo2 mRNA was reduced by > 90% and piezo2 protein was not detectable. Piezo2-KO mice displayed no morphological abnormalities or altered cardiac function under nonstressed conditions. In a subsequent step, hearts of Piezo2-KO or WT-Cre+-mice were stressed by either three weeks of increased afterload (angiotensin II, 2.5 mg/kg/day) or one week of hypercontractility (isoprenaline, 30 mg/kg/day). As expected, angiotensin II treatment in WT-Cre+-mice resulted in higher heart and lung weight (per body weight, + 38%, + 42%), lower ejection fraction and cardiac output (− 30%, − 39%) and higher left ventricular anterior and posterior wall thickness (+ 34%, + 37%), while isoprenaline led to higher heart weight (per body weight, + 25%) and higher heart rate and cardiac output (+ 24%, + 54%). The Piezo2-KO mice reacted similarly with the exception that the angiotensin II-induced increases in wall thickness were blunted and the isoprenaline-induced increase in cardiac output was slightly less pronounced. As cardiac function was neither severely affected under basal nor under stressed conditions in Piezo2-KO mice, we conclude that piezo2 is not an indispensable mechanosensor in cardiomyocytes.
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- 2022
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3. The invasive alga Gracilaria vermiculophylla in the native northwest Pacific under ocean warming: Southern genetic consequence and northern range expansion
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Yi-Jia Liu, Kai-Le Zhong, Alexander Jueterbock, Shimada Satoshi, Han-Gil Choi, Florian Weinberger, Jorge Assis, and Zi-Min Hu
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biodiversity conservation ,climate change ,microsatellite genotyping, peripheral populations ,range limits ,genetic lineage loss ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
Ocean warming is one of the most important factors in shaping the spatial distribution and genetic biodiversity of marine organisms worldwide. The northwest Pacific has been broadly illustrated as an essential seaweed diversity hotspot. However, few studies have yet investigated in this region on whether and how past and ongoing climate warming impacted the distribution and genetic pools of coastal seaweeds. Here, we chose the invasive species Gracilaria vermiculophylla as a model, and identified multiple genetic lineages in the native range through genome-scale microsatellite genotyping. Subsequently, by reconstructing decadal trends of sea surface temperature (SST) change between 1978 and 2018, we found that SST in northern Japan and the East China Sea indeed increased broadly by 0.25-0.4°C/decade. The projections of species distribution models (SDMs) under different future climate change scenarios (RCP 2.6, RCP 4.5, RCP 6.0 and RCP 8.5) indicated that a unique genetic pool of G. vermiculophylla at its current southern range limit (i.e. the South China Sea) is at high risk of disappearance, and that the populations at its current northern range limit (i.e. in Hokkaido region) will undergo poleward expansions, particularly by the year 2100. Such responses, along with this species’ limited dispersal potential, may considerably alter the contemporary distribution and genetic composition of G. vermiculophylla in the northwest Pacific, and ultimately threaten ecological services provided by this habitat-forming species and other associated functional roles.
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- 2022
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4. Elevated Temperature-Induced Epimicrobiome Shifts in an Invasive Seaweed Gracilaria vermiculophylla
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Luisa Düsedau, Yifei Ren, Minglei Hou, Martin Wahl, Zi-Min Hu, Gaoge Wang, and Florian Weinberger
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epibacterial communities ,16S rRNA gene amplicon sequencing ,elevated temperature ,Gracilaria vermiculophylla ,Biology (General) ,QH301-705.5 - Abstract
Epibacterial communities on seaweeds are affected by several abiotic factors such as temperature and acidification. Due to global warming, surface seawater temperatures are expected to increase by 0.5–5 °C in the next century. However, how epibacterial communities associated with seaweeds will respond to global warming remains unknown. In this study, we investigated the response of epibacterial communities associated with the invasive Gracilaria vermiculophylla exposed to 3 °C above ambient temperature for 4 months using a benthocosm system in Kiel, Germany, and 16S rRNA gene amplicon sequencing. The results showed that elevated temperature affected the beta-diversity of the epibacterial communities. Some potential seaweed pathogens such as Pseudoalteromonas, Vibrio, Thalassotalea, and Acinetobacter were identified as indicator genera at the elevated temperature level. Thirteen core raw amplicon sequence variants in the elevated temperature group were the same as the populations distributed over a wide geographical range, indicating that these core ASVs may play an important role in the invasive G. vermicullophylla. Overall, this study not only contributes to a better understanding of how epibacterial communities associated with G. vermiculophylla may adapt to ocean warming, but also lays the foundation for further exploration of the interactions between G. vermiculophylla and its epimicrobiota.
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- 2023
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5. In vivo grafting of large engineered heart tissue patches for cardiac repair
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Richard J. Jabbour, Thomas J. Owen, Pragati Pandey, Marina Reinsch, Brian Wang, Oisín King, Liam Steven Couch, Dafni Pantou, David S. Pitcher, Rasheda A. Chowdhury, Fotios G. Pitoulis, Balvinder S. Handa, Worrapong Kit-Anan, Filippo Perbellini, Rachel C. Myles, Daniel J. Stuckey, Michael Dunne, Mayooran Shanmuganathan, Nicholas S. Peters, Fu Siong Ng, Florian Weinberger, Cesare M. Terracciano, Godfrey L. Smith, Thomas Eschenhagen, and Sian E. Harding
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Cardiology ,Stem cells ,Medicine - Abstract
Engineered heart tissue (EHT) strategies, by combining cells within a hydrogel matrix, may be a novel therapy for heart failure. EHTs restore cardiac function in rodent injury models, but more data are needed in clinically relevant settings. Accordingly, an upscaled EHT patch (2.5 cm × 1.5 cm × 1.5 mm) consisting of up to 20 million human induced pluripotent stem cell–derived cardiomyocytes (hPSC-CMs) embedded in a fibrin-based hydrogel was developed. A rabbit myocardial infarction model was then established to test for feasibility and efficacy. Our data showed that hPSC-CMs in EHTs became more aligned over 28 days and had improved contraction kinetics and faster calcium transients. Blinded echocardiographic analysis revealed a significant improvement in function in infarcted hearts that received EHTs, along with reduction in infarct scar size by 35%. Vascularization from the host to the patch was observed at week 1 and stable to week 4, but electrical coupling between patch and host heart was not observed. In vivo telemetry recordings and ex vivo arrhythmia provocation protocols showed that the patch was not pro-arrhythmic. In summary, EHTs improved function and reduced scar size without causing arrhythmia, which may be due to the lack of electrical coupling between patch and host heart.
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- 2021
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6. Arginine:Glycine Amidinotransferase Is Essential for Creatine Supply in Mice During Chronic Hypoxia
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Juliane Hannemann, Kathrin Cordts, Anika Seniuk, Chi-un Choe, Lena Schmidt-Hutten, Jorge Duque Escobar, Florian Weinberger, Rainer Böger, and Edzard Schwedhelm
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creatine ,homoarginine ,hypoxia ,L-arginine:glycine amidinotransferase ,pulmonary hypertension ,Physiology ,QP1-981 - Abstract
Objective: Chronic hypoxia induces pulmonary and cardiovascular pathologies, including pulmonary hypertension (PH). L-arginine:glycine amidinotransferase (AGAT) is essential for homoarginine (hArg) and guanidinoacetate synthesis, the latter being converted to creatine by guanidinoacetate methyltransferase. Low hArg concentrations are associated with cardiovascular morbidity and predict mortality in patients with PH. We therefore aimed to investigate the survival and cardiac outcome of AGAT knockout (Agat−/−) mice under hypoxia and a possible rescue of the phenotype.Methods:Agat−/− mice and wild-type (WT) littermates were subjected to normoxia or normobaric hypoxia (10% oxygen) for 4 weeks. A subgroup of Agat−/− mice was supplemented with 1% creatine from weaning. Survival, hematocrit, blood lactate and glucose, heart weight-to-tibia length (HW/TL) ratio, hArg plasma concentration, and Agat and Gamt expression in lung, liver, and kidneys were evaluated.Results: After 6 h of hypoxia, blood lactate was lower in Agat−/−-mice as compared to normoxia (p < 0.001). Agat−/− mice died within 2 days of hypoxia, whereas Agat−/− mice supplemented with creatine and WT mice survived until the end of the study. In WT mice, hematocrit (74 ± 4 vs. 55 ± 2%, mean ± SD, p < 0.001) and HW/TL (9.9 ± 1.3 vs. 7.3 ± 0.7 mg/mm, p < 0.01) were higher in hypoxia, while hArg plasma concentration (0.25 ± 0.06 vs. 0.38 ± 0.12 μmol/L, p < 0.01) was lower. Agat and Gamt expressions were differentially downregulated by hypoxia in lung, liver, and kidneys.Conclusion:Agat and Gamt are downregulated in hypoxia. Agat−/− mice are nonviable in hypoxia. Creatine rescues the lethal phenotype, but it does not reduce right ventricular hypertrophy of Agat−/− mice in hypoxia.
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- 2021
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7. Geographic variation in fitness‐related traits of the bladderwrack Fucus vesiculosus along the Baltic Sea‐North Sea salinity gradient
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Francisco R. Barboza, Jonne Kotta, Florian Weinberger, Veijo Jormalainen, Patrik Kraufvelin, Markus Molis, Hendrik Schubert, Henrik Pavia, Göran M. Nylund, Lena Kautsky, Ellen Schagerström, Esther Rickert, Mahasweta Saha, Stein Fredriksen, Georg Martin, Kaire Torn, Ari Ruuskanen, and Martin Wahl
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environmental gradient ,foundation species ,Fucus vesiculosus ,intraspecific variation ,Ecology ,QH540-549.5 - Abstract
Abstract In the course of the ongoing global intensification and diversification of human pressures, the study of variation patterns of biological traits along environmental gradients can provide relevant information on the performance of species under shifting conditions. The pronounced salinity gradient, co‐occurrence of multiple stressors, and accelerated rates of change make the Baltic Sea and its transition to North Sea a suitable region for this type of study. Focusing on the bladderwrack Fucus vesiculosus, one of the main foundation species on hard‐bottoms of the Baltic Sea, we analyzed the phenotypic variation among populations occurring along 2,000 km of coasts subjected to salinities from 4 to >30 and a variety of other stressors. Morphological and biochemical traits, including palatability for grazers, were recorded at 20 stations along the Baltic Sea and four stations in the North Sea. We evaluated in a common modeling framework the relative contribution of multiple environmental drivers to the observed trait patterns. Salinity was the main and, in some cases, the only environmental driver of the geographic trait variation in F. vesiculosus. The decrease in salinity from North Sea to Baltic Sea stations was accompanied by a decline in thallus size, photosynthetic pigments, and energy storage compounds, and affected the interaction of the alga with herbivores and epibiota. For some traits, drivers that vary locally such as wave exposure, light availability or nutrient enrichment were also important. The strong genetic population structure in this macroalgae might play a role in the generation and maintenance of phenotypic patterns across geographic scales. In light of our results, the desalination process projected for the Baltic Sea could have detrimental impacts on F. vesiculosus in areas close to its tolerance limit, affecting ecosystem functions such as habitat formation, primary production, and food supply.
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- 2019
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8. Linking Ecology to Genetics to Better Understand Adaptation and Evolution: A Review in Marine Macrophytes
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Zi-Min Hu, Kai-Le Zhong, Florian Weinberger, De-Lin Duan, Stefano G. A. Draisma, and Ester A. Serrão
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adaptive genetic variation ,divergent selection ,ecological processes ,phenotypic plasticity ,ploidy diversity ,genetic consequences ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
Ecological processes and intra-specific genetic diversity reciprocally affect each other. While the importance of uniting ecological variables and genetic variation to understand species’ plasticity, adaptation, and evolution is increasingly recognized, only few studies have attempted to address the intersection of population ecology and genetics using marine macrophyte as models. Representative empirical case studies on genetic diversity are reviewed that explore ecological and evolutionary processes in marine macrophytes. These include studies on environment-induced phenotypic plasticity and associated ecological adaptation; population genetic variation and structuring driven by ecological variation; and ecological consequences mediated by intraspecific and interspecific diversity. Knowledge gaps are also discussed that impede the connection of ecology and genetics in macrophytes and possible approaches to address these issues. Finally, an eco-evolutionary perspective is advocated, by incorporating structural-to-functional genomics and life cycle complexity, to increase the understanding of the adaptation and evolution of macrophytes in response to environmental heterogeneity.
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- 2020
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9. Simulated Heatwaves Lead to Upregulated Chemical Defense of a Marine Foundation Macrophyte Against Microbial Colonizers
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Chi Guan, Mahasweta Saha, and Florian Weinberger
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chemical defense ,Zostera marina ,heatwaves ,fouling ,climate extremes ,plant–climate interactions ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
Climate change is characterized not only by an increase in mean temperature, but also an increase in the variability around the means causing extreme events like marine heatwaves. These events are expected to have strong influence on the ecology of marine foundation species such as the eelgrass Zostera marina. Bacterial and macroscopic foulers are ubiquitous in the marine environment; they can have detrimental impacts on macrophytes and warming is known to enhance bacterial fouling. Thus, to investigate the consequence of heatwaves on the chemical defense of eelgrass against microbial colonizers, we incubated Z. marina plants in the Kiel Outdoor Benthocosm system under ambient control conditions and two different heatwave treatments: a treatment experiencing two spring heatwaves followed by a summer heatwave, and a treatment only experiencing just the summer heatwave. The capacity to deter microbial colonizers was found to be significantly up-regulated in Z. marina from both heatwave treatments in comparison to Z. marina under control conditions, suggesting defense regulation of Z. marina in response to marine heatwaves. We conclude climate extremes such as heatwaves can trigger a regulation in the defense capacity, which could be necessary for resilience against climate change scenarios. Such dynamics in rapid regulation of defense capacity as found in this study could also apply to other host plant – microbe interactions under scenarios of ongoing climate change or extreme climate events like heatwaves.
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- 2020
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10. MtDNA-Based Phylogeography of the Red Alga Agarophyton vermiculophyllum (Gigartinales, Rhodophyta) in the Native Northwest Pacific
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Kai-Le Zhong, Xiao-Han Song, Han-Gil Choi, Shimada Satoshi, Florian Weinberger, Stefano G. A. Draisma, De-Lin Duan, and Zi-Min Hu
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Agarophyton vermiculophyllum ,cox1 ,genetic lineages ,marginal sea ,phylogeography ,red seaweed ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
The repeated transgression and regression of coastlines mediated by the late Quaternary glacial–interglacial cycles make the northwest Pacific a hot spot to study marine speciation and population diversity. The red alga Agarophyton vermiculophyllum is an ecologically important species native to the northwest Pacific, capturing considerable research interest due to its wide-range invasiveness in Europe and North America. However, the knowledge of phylogeographic structure and intraspecific genetic diversity across the entire native range was still scarce. Here, we used 1,214-bp of mitochondrial cytochrome c oxidase subunit 1 (cox1) to explore phylogeographic patterns, lineage structure, and population genetic differentiation of 48 A. vermiculophyllum populations in the northwest Pacific. Our DNA data revealed overall high haplotype diversity and low nucleotide diversity and five phylogeographically structured genetic lineages that diverged significantly from each other. S-DIVA analysis showed the ancestors of A. vermiculophyllum originating from multiple areas encompassing the Japan–Pacific coast, East and South China Seas. This combined evidence indicates that A. vermiculophyllum might have survived in multiple scattered glacial refugia during the late Quaternary climate oscillations in the northwest Pacific. Such knowledge may help to better understand how palaeoclimate interacted with contemporary environments to contribute to intraspecific genetic variation and provide a new perspective for conserving natural resource of A. vermiculophyllum in the northwest Pacific.
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- 2020
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11. Salinity and Time Can Alter Epibacterial Communities of an Invasive Seaweed
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Mahasweta Saha, Robert M. W. Ferguson, Shawn Dove, Sven Künzel, Rafael Meichssner, Sven C. Neulinger, Finn Ole Petersen, and Florian Weinberger
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salinity ,time ,invasive ,seaweed ,epibacteria ,community ,Microbiology ,QR1-502 - Abstract
The establishment of epibacterial communities is fundamental to seaweed health and fitness, in modulating ecological interactions and may also facilitate adaptation to new environments. Abiotic factors like salinity can determine bacterial abundance, growth and community composition. However, influence of salinity as a driver of epibacterial community composition (until species level) has not been investigated for seaweeds and especially under long time scales. We also do not know how abiotic stressors may influence the ‘core’ bacterial species of seaweeds. Following an initial (immediately after field collection) sampling of epibacterial community of an invasive red seaweed Agarophyton vermicullophylum, we conducted a long term mesocosm experiment for 5 months, to examine the influence of three different salinities (low, medium and high) at two different time points (3 months after start of experiment and 5 months, i.e., at the end of experiment) on the epibacterial community richness and composition of Agarophyton. Metagenomic sequencing showed that epibacterial communities changed significantly according to salinity and time points sampled. Epibacterial richness was significantly different between low and high salinities at both time points. Epibacterial richness also varied significantly between 3 months (after start of experiment) and 5 months (end of experiment) within low, medium and high salinity level. Irrespective of salinity levels and time points sampled 727 taxa consistently appeared in all Agarophyton samples hinting at the presence of core bacterial species on the surface of the alga. Our results indicate that both salinity and time can be major driving forces in structuring epibacterial communities of seaweeds with respect to richness and β-diversity. We highlight the necessity of conducting long term experiments allowing us to detect and understand epibacterial succession over time on seaweeds.
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- 2020
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12. Shifting beach wrack composition in the SW Baltic Sea and its effect on beach use
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Florian Weinberger, Swantje Sundt, Nadja Staerck, Christine Merk, Rolf Karez, and Katrin Rehdanz
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beach management ,beach user behavior ,beach wrack ,coastal eutrophication ,nuisance seaweed ,seaweed odor ,Biology (General) ,QH301-705.5 ,Ecology ,QH540-549.5 - Abstract
Beach visitors rate beach quality in large part by its appearance. Removal of natural beach litter (called beach wrack) has, therefore, high priority for beach managers in coastal areas dependent on revenues from tourism. Focusing on the German Baltic Sea coast, the amount of beach wrack has increased by a factor of approximately 3.4 between 1977 and 2012/2013. At the same time, the composition of macrophyte communities underwent a severe change from late successional stages (eelgrass and bladder wrack) toward more ephemeral communities. Correspondingly, the contribution of bladder wrack to seaweed litter alone dropped from 75% in 1977 to 18.1% today, while the contribution of ephemeral and nutrient-opportunistic seaweeds increased by a factor larger than 6.2 to approximately 44%. Such seaweed opportunists could have a higher potential for olfactorial nuisance than late successional macrophytes. To test this hypothesis, odors extracted from equal amounts of nutrient-opportunistic and non-opportunistic species that had been partially degraded under equal conditions were compared in a public survey. Participants graded the smell of opportunistic species, in particular Ceramium tenuicorne, consistently as more intense and less pleasant than the odor of non-opportunistic species. The particularly high potential of Ceramium litter and the relatively lower potential of eelgrass litter for deterrence were confirmed in field experiments. We conclude that the documented compositional shift in macrophyte communities at German Baltic Sea coasts since the onset of eutrophication has caused a shift of beach wrack composition toward species with a higher potential for olfactorial deterrence, which could explain recent concerns of beach managers about beach wrack despite the limited increase of biomass in the study area.
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- 2021
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13. Chemically Mediated Microbial 'Gardening' Capacity of a Seaweed Holobiont Is Dynamic
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Mahasweta Saha, Shawn Dove, and Florian Weinberger
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seaweed ,holobiont ,microbial gardening ,salinity ,A. vermiculophyllum ,Biology (General) ,QH301-705.5 - Abstract
Terrestrial plants are known to “garden” the microbiota of their rhizosphere via released metabolites (that can attract beneficial microbes and deter pathogenic microbes). Such a “gardening” capacity is also known to be dynamic in plants. Although microbial “gardening” has been recently demonstrated for seaweeds, we do not know whether this capacity is a dynamic property in any aquatic flora like in terrestrial plants. Here, we tested the dynamic microbial “gardening” capacity of seaweeds using the model invasive red seaweed Agarophyton vermiculophyllum. Following an initial extraction of surface-associated metabolites (immediately after field collection), we conducted a long-term mesocosm experiment for 5 months to test the effect of two different salinities (low = 8.5 and medium = 16.5) on the microbial “gardening” capacity of the alga over time. We tested “gardening” capacity of A. vermiculophyllum originating from two different salinity levels (after 5 months treatments) in settlement assays against three disease causing pathogenic bacteria and seven protective bacteria. We also compared the capacity of the alga with field-collected samples. Abiotic factors like low salinity significantly increased the capacity of the alga to deter colonization by pathogenic bacteria while medium salinity significantly decreased the capacity of the alga over time when compared to field-collected samples. However, capacity to attract beneficial bacteria significantly decreased at both tested salinity levels when compared to field-collected samples. Dynamic microbial “gardening” capacity of a seaweed to attract beneficial bacteria and deter pathogenic bacteria is demonstrated for the first time. Such a dynamic capacity as found in the current study could also be applicable to other aquatic host–microbe interactions. Our results may provide an attractive direction of research towards manipulation of salinity and other abiotic factors leading to better defended A. vermiculophyllum towards pathogenic bacteria thereby enhancing sustained production of healthy A. vermiculophyllum in farms.
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- 2020
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14. Chemical Defence of a Seagrass against Microfoulers and Its Seasonal Dynamics
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Chi Guan, Mahasweta Saha, and Florian Weinberger
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rosmarinic acid ,fouling ,epibiosis ,Zostera ,chemical defence ,seasonal fluctuation ,epibiotic bacteria ,microfouling ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
In marine environments bacterial microfoulers are an important determinant for the settlement of algal and animal macrofoulers. At the same time fouling is usually subject to seasonal fluctuation. Additionally, the seagrass Zostera marina is prone to microfouling, although this marine spermatophyte is known to be chemically defended against bacterial settlers. Spermatophytes are often capable of induced or activated defences against biological enemies such as pathogens or herbivores, but it is still unknown whether they can fine-tune their antifouling-defence according to settlement pressure. We therefore assessed the seasonality of bacterial settlement pressure, defence against microsettlers and concentrations of a previously identified defence compound, rosmarinic acid, on surfaces of Z. marina. All examined variables peaked in summer, while they tended to be lower in spring and autumn. The seasonality of defence activity and rosmarinic acid surface concentration was positively correlated with the seasonal fluctuation of fouling pressure, which suggests that Z. marina can adjust its defence level to the relatively high bacterial fouling pressure in summer. Besides of biotic factors the seasonal change of environmental factors, such as nitrogen supply, and in particular temperature, also affected the defence level, either directly or through indirect effects on the microbial settlers.
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- 2019
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15. Rescue of cardiomyopathy through U7snRNA‐mediated exon skipping in Mybpc3‐targeted knock‐in mice
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Christina Gedicke‐Hornung, Verena Behrens‐Gawlik, Silke Reischmann, Birgit Geertz, Doreen Stimpel, Florian Weinberger, Saskia Schlossarek, Guillaume Précigout, Ingke Braren, Thomas Eschenhagen, Giulia Mearini, Stéphanie Lorain, Thomas Voit, Patrick A. Dreyfus, Luis Garcia, and Lucie Carrier
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alternative splicing ,antisense oligoribonucleotide ,cardiac myosin‐binding protein‐C ,exon skipping ,hypertrophic cardiomyopathy ,Medicine (General) ,R5-920 ,Genetics ,QH426-470 - Abstract
Abstract Exon skipping mediated by antisense oligoribonucleotides (AON) is a promising therapeutic approach for genetic disorders, but has not yet been evaluated for cardiac diseases. We investigated the feasibility and efficacy of viral‐mediated AON transfer in a Mybpc3‐targeted knock‐in (KI) mouse model of hypertrophic cardiomyopathy (HCM). KI mice carry a homozygous G>A transition in exon 6, which results in three different aberrant mRNAs. We identified an alternative variant (Var‐4) deleted of exons 5–6 in wild‐type and KI mice. To enhance its expression and suppress aberrant mRNAs we designed AON‐5 and AON‐6 that mask splicing enhancer motifs in exons 5 and 6. AONs were inserted into modified U7 small nuclear RNA and packaged in adeno‐associated virus (AAV‐U7‐AON‐5+6). Transduction of cardiac myocytes or systemic administration of AAV‐U7‐AON‐5+6 increased Var‐4 mRNA/protein levels and reduced aberrant mRNAs. Injection of newborn KI mice abolished cardiac dysfunction and prevented left ventricular hypertrophy. Although the therapeutic effect was transient and therefore requires optimization to be maintained over an extended period, this proof‐of‐concept study paves the way towards a causal therapy of HCM.
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- 2013
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16. Conserved and species-specific oxylipin pathways in the wound-activated chemical defense of the noninvasive red alga Gracilaria chilensis and the invasive Gracilaria vermiculophylla
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Martin Rempt, Florian Weinberger, Katharina Grosser, and Georg Pohnert
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activated chemical defense ,invasive species ,oxylipins ,prostaglandins ,red algae ,regulation ,Science ,Organic chemistry ,QD241-441 - Abstract
Chemical defense of the invasive red alga Gracilaria vermiculophylla has been studied and compared to that of the noninvasive but related Gracilaria chilensis. Both species rely on a wound-activated chemical defense that makes them less attractive to the herbivorous sea snail Echinolittorina peruviana. The chemical stress response of both species was monitored by LC–ESIMS-based metabolic profiling and revealed commonalities and differences. Both algae rely on a rapid lipoxygenase mediated transformation of arachidonic acid to known and novel oxylipins. Common products are 7,8-dihydroxyeicosatetraenoic acid and a novel eicosanoid with an unusual γ-lactone moiety. Several prostaglandins were predominantly formed by the invasive species. The role of some of these metabolites was investigated by surveying the attachment of E. peruviana on artificial food containing the respective oxylipins. Both algae species are defended against this general herbivore by 7,8-dihydroxyeicosatetraenoic acid, whereas the prostaglandins and the novel oxylipins were inactive at naturally occurring concentrations. The role of different oxylipins in the invasive potential of Gracilaria spp. is discussed.
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- 2012
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17. Development and characterization of microsatellite loci for the haploid–diploid red seaweed Gracilaria vermiculophylla
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Nicole M. Kollars, Stacy A. Krueger-Hadfield, James E. Byers, Thomas W. Greig, Allan E. Strand, Florian Weinberger, and Erik E. Sotka
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Complex life cycles ,Biological invasions ,Seaweed ,Microsatellites ,Haploid-diploid ,Gracilaria vermiculophylla ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Microsatellite loci are popular molecular markers due to their resolution in distinguishing individual genotypes. However, they have rarely been used to explore the population dynamics in species with biphasic life cycles in which both haploid and diploid stages develop into independent, functional organisms. We developed microsatellite loci for the haploid–diploid red seaweed Gracilaria vermiculophylla, a widespread non-native species in coastal estuaries of the Northern hemisphere. Forty-two loci were screened for amplification and polymorphism. Nine of these loci were polymorphic across four populations of the extant range with two to eleven alleles observed. Mean observed and expected heterozygosities ranged from 0.265 to 0.527 and 0.317 to 0.387, respectively. Overall, these markers will aid in the study of the invasive history of this seaweed and further studies on the population dynamics of this important haploid–diploid primary producer.
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- 2015
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18. Defence chemistry modulation by light and temperature shifts and the resulting effects on associated epibacteria of Fucus vesiculosus.
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Mahasweta Saha, Martin Rempt, Stephanie B Stratil, Martin Wahl, Georg Pohnert, and Florian Weinberger
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Medicine ,Science - Abstract
The goals of this study were (1) to investigate whether Fucus vesiculosus regulates the production of its antifouling defence chemicals against epibacteria in response to light limitation and temperature shifts and (2) to investigate if different surface concentrations of defence compounds shape epibacterial communities. F. vesiculosus was incubated in indoor mesocosms at five different temperature conditions (5 to 25°C) and in outdoor mesocosms under six differently reduced sunlight conditions (0 to 100%), respectively. Algal surface concentrations of previously identified antifouling compounds--dimethylsulphopropionate (DMSP), fucoxanthin and proline--were determined and the bacterial community composition was characterized by in-depth sequencing of the 16S-rRNA gene. Altogether, the effect of different treatment levels upon defence compound concentrations was limited. Under all conditions DMSP alone appeared to be sufficiently concentrated to warrant for at least a partial inhibitory action against epibiotic bacteria of F. vesiculosus. In contrast, proline and fucoxanthin rarely reached the necessary concentration ranges for self-contained inhibition. Nonetheless, in both experiments along with the direct influence of temperature and light, all three compounds apparently affected the overall bacterial community composition associated with F. vesiculosus since tendencies for insensitivity towards all three compounds were observed among bacterial taxa that typically dominate those communities. Given that the concentrations of at least one of the compounds (in most cases DMSP) were always high enough to inhibit bacterial settlement, we conclude that the capacity of F. vesiculosus for such defence will hardly be compromised by shading or warming to temperatures up to 25°C.
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- 2014
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19. Metabolomic assessment of induced and activated chemical defence in the invasive red alga Gracilaria vermiculophylla.
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Göran M Nylund, Florian Weinberger, Martin Rempt, and Georg Pohnert
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Medicine ,Science - Abstract
In comparison with terrestrial plants the mechanistic knowledge of chemical defences is poor for marine macroalgae. This restricts our understanding in the chemically mediated interactions that take place between algae and other organisms. Technical advances such as metabolomics, however, enable new approaches towards the characterisation of the chemically mediated interactions of organisms with their environment. We address defence responses in the red alga Gracilaria vermiculophylla using mass spectrometry based metabolomics in combination with bioassays. Being invasive in the north Atlantic this alga is likely to possess chemical defences according to the prediction that well-defended exotics are most likely to become successful invaders in systems dominated by generalist grazers, such as marine macroalgal communities. We investigated the effect of intense herbivore feeding and simulated herbivory by mechanical wounding of the algae. Both processes led to similar changes in the metabolic profile. Feeding experiments with the generalist isopod grazer Idotea baltica showed that mechanical wounding caused a significant increase in grazer resistance. Structure elucidation of the metabolites of which some were up-regulated more than 100 times in the wounded tissue, revealed known and novel eicosanoids as major components. Among these were prostaglandins, hydroxylated fatty acids and arachidonic acid derived conjugated lactones. Bioassays with pure metabolites showed that these eicosanoids are part of the innate defence system of macroalgae, similarly to animal systems. In accordance with an induced defence mechanism application of extracts from wounded tissue caused a significant increase in grazer resistance and the up-regulation of other pathways than in the activated defence. Thus, this study suggests that G. vermiculophylla chemically deters herbivory by two lines of defence, a rapid wound-activated process followed by a slower inducible defence. By unravelling involved pathways using metabolomics this work contributes significantly to the understanding of activated and inducible defences for marine macroalgae.
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- 2011
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20. How to repair a broken heart with pluripotent stem cell-derived cardiomyocytes
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Katrin Ridders, Thomas Eschenhagen, and Florian Weinberger
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Heart Failure ,Pluripotent Stem Cells ,Cell type ,business.industry ,Myocardium ,Regeneration (biology) ,Cell Differentiation ,medicine.disease ,Regenerative medicine ,Tissue engineering ,Heart failure ,medicine ,Humans ,Myocytes, Cardiac ,Progenitor cell ,Cardiology and Cardiovascular Medicine ,Induced pluripotent stem cell ,business ,Molecular Biology ,Neuroscience ,Ex vivo - Abstract
Heart regeneration addresses a central problem in cardiology, the irreversibility of the loss of myocardium that eventually leads to heart failure. True restoration of heart function can only be achieved by remuscularization, i.e. replacement of lost myocardium by new, force-developing heart muscle. With the availability of principally unlimited human cardiomyocytes from pluripotent stem cells, one option to remuscularize the injured heart is to produce large numbers of cardiomyocytes plus/minus other cardiovascular cell types or progenitors ex vivo and apply them to the heart, either by injection or application as a patch. Exciting progress over the past decade has led to the first clinical applications, but important questions remain. Academic and increasingly corporate activity is ongoing to answer them and optimize the approach to finally develop a true regenerative therapy of heart failure.
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- 2022
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21. THE RHODOEXPLORER PLATFORM FOR RED ALGAL GENOMICS AND WHOLE GENOME ASSEMBLIES FOR SEVERAL GRACILARIA SPECIES
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Agnieszka P. Lipinska, Stacy A. Krueger-Hadfield, Olivier Godfroy, Simon Dittami, Lígia Ayres-Ostrock, Guido Bonthond, Loraine Brillet-Guéguen, Susana Coelho, Erwan Corre, Guillaume Cossard, Christophe Destombe, Paul Epperlein, Sylvain Faugeron, Elizabeth Ficko-Blean, Jessica Beltrán, Emma Lavaut, Arthur Le Bars, Fabiana Marchi, Stéphane Mauger, Gurvan Michel, Philippe Potin, Delphine Scornet, Erik E. Sotka, Florian Weinberger, Mariana Cabral de Oliveira, Marie-Laure Guillemin, Estela M. Plastino, and Myriam Valero
- Abstract
Macroalgal (seaweed) genomic resources are generally lacking as compared to other eukaryotic taxa, and this is particularly true in the red algae (Rhodophyta). Understanding red algal genomes is critical to understanding eukaryotic evolution given that red algal genes are spread across eukaryotic lineages from secondary endosymbiosis and red algae diverged early in the Archaeplastids. The Gracilariales are highly diverse and widely distributed order whose species can serve as ecosystem engineers in intertidal habitats, including several notorious introduced species. The genusGracilariais cultivated worldwide, in part for its production of agar and other bioactive compounds with downstream pharmaceutical and industrial applications. This genus is also emerging as a model for algal evolutionary ecology. Here, we report new whole genome assemblies for two species (G. chilensisandG. gracilis), a draft genome assembly ofG. caudata, and genome annotation of the previously publishedG. vermiculophyllagenome. To facilitate accessibility and comparative analysis, we integrated these data in a newly created web-based portal dedicated to red algal genomics (https://rhodoexplorer.sb-roscoff.fr). These genomes will provide a resource for understanding algal biology and, more broadly, eukaryotic evolution.
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- 2023
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22. Non‐native hosts of an invasive seaweed holobiont have more stable microbial communities compared to native hosts in response to thermal stress
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Guido Bonthond, Anna‐Katrin Neu, Till Bayer, Stacy A. Krueger‐Hadfield, Sven Künzel, and Florian Weinberger
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Ecology ,Ecology, Evolution, Behavior and Systematics ,Nature and Landscape Conservation - Abstract
Seaweeds are colonized by a microbial community which can be directly linked to their performance. This community is shaped by an interplay of stochastic and deterministic processes, including mechanisms which the holobiont host deploys to manipulate its associated microbiota. The Anna Karenina Principle predicts that when a holobiont is exposed to suboptimal or stressful conditions, these host mechanisms may be compromised. This leads to a relative increase of stochastic processes that may potentially result in the succession of a microbial community harmful to the host. Based on this principle, we used the variability in microbial communities (i.e., beta diversity) as a proxy for stability within the invasive holobiont Gracilaria vermiculophylla during a simulated invasion in a common garden experiment. At elevated temperature (22 °C), host performance declined and disease incidence and beta diversity increased. At optimal temperature (15 °C), beta diversity did not differ between native and non-native populations. However, under thermally stressful conditions beta diversity increased more in epibiota from native populations. This suggests that epibiota associated with holobionts from non-native populations are under thermal stress more stable than holobionts from native populations. This pattern reflects an increase of deterministic processes acting on epibiota associated with non-native hosts, which in the setting of a common garden can be assumed to originate from the host itself. Therefore, these experimental data suggest that the invasion process may have selected for hosts better able to maintain stable microbiota during stress. Future studies are needed to identify the underlying host mechanisms.
- Published
- 2023
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23. Cross-Host Protection of Marine Bacteria Against Macroalgal Disease
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Florian Weinberger, Jiasui Li, Suhelen Egan, Marwan E Majzoub, and Mahasweta Saha
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0303 health sciences ,Pseudoalteromonas arctica ,Ecology ,030306 microbiology ,Host (biology) ,Soil Science ,Zoology ,Biology ,biology.organism_classification ,medicine.disease_cause ,Thallus ,law.invention ,03 medical and health sciences ,Probiotic ,Marine bacteriophage ,Algae ,Microbial ecology ,law ,medicine ,14. Life underwater ,Pathogen ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology - Abstract
Despite an increasing awareness of disease impacts on both cultivated and native seaweed populations, the development of marine probiotics has been limited and predominately focused on farmed animals. Bleaching (loss of thallus pigmentation) is one of the most prevalent diseases observed in marine macroalgae. Endemic probiotic bacteria have been characterized to prevent bleaching disease in red macroalgae Agarophyton vermiculophyllum and Delisea pulchra; however, the extent to which probiotic strains provide cross-protection to non-endemic hosts and the influence of native microbiota remain unknown. Using A. vermiculophyllum as a model, we demonstrate that co-inoculation with the pathogen Pseudoalteromonas arctica G-MAN6 and D. pulchra probiotic strain Phaeobacter sp. BS52 or Pseudoalteromonas sp. PB2-1 reduced the disease risks compared to the pathogen only treatment. Moreover, non-endemic probiotics outperformed the endemic probiotic strain Ralstonia sp. G-NY6 in the presence of the host natural microbiota. This study highlights how the native microbiota can impact the effectiveness of marine probiotics and illustrates the potential of harnessing probiotics that can function across different hosts to mitigate the impact of emerging marine diseases.
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- 2022
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24. Intraspecific diversity and genetic structure in the widespread macroalga Agarophyton vermiculophyllum
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Erik E. Sotka, Guido Bonthond, Stacy A. Krueger-Hadfield, Florian Weinberger, James E. Byers, and Ryuta Terada
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0106 biological sciences ,Phylogenetic tree ,Range (biology) ,010604 marine biology & hydrobiology ,Lineage (evolution) ,Genetic Variation ,Plant Science ,15. Life on land ,Aquatic Science ,Biology ,Seaweed ,DNA, Mitochondrial ,010603 evolutionary biology ,01 natural sciences ,SNP genotyping ,Phylogeography ,Population bottleneck ,Evolutionary biology ,Geographic site ,Rhodophyta ,Genetic structure ,14. Life underwater ,Phylogeny ,Microsatellite Repeats - Abstract
Single-gene markers, such as the mitochondrial cox1, microsatellites, and single-nucleotide polymorphisms are powerful methods to describe diversity within and among taxonomic groups and characterize phylogeographic patterns. Large repositories of publicly-available, molecular data can be combined to generate and evaluate evolutionary hypotheses for many species, including algae. In the case of biological invasions, the combination of different molecular markers has enabled the description of the geographic distribution of invasive lineages. Here, we review the phylogeography of the widespread invasive red macroalga Agarophyton vermiculophyllum (synonym Gracilaria vermiculophylla). The cox1 barcoding provided the first description of the invasion history and hinted at a strong genetic bottleneck during the invasion. Yet, more recent microsatellite and SNP genotyping has not found evidence for bottlenecks and instead suggested that genetically diverse inocula arose from a highly diverse source population, multiple invasions, or some mix of these processes. The bottleneck evident from cox1 barcoding likely reflects the dominance of one mitochondrial lineage, and one haplotype in particular, in the northern source populations in Japan. Recent cox1 sequencing of A. vermiculophyllum has illuminated the complexity of phylogeographic structure in its native range of the northwest Pacific Ocean. For example, the western coast of Honshu in the Sea of Japan displays spatial patterns of haplotypic diversity with multiple lineages found together at the same geographic site. By consolidating the genetic data of this species, we clarify the phylogenetic relationships of a well-studied macroalga introduced to virtually every temperate estuary of the Northern Hemisphere.
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- 2021
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25. Shifting chemical defence or novel weapons? A review of defence traits in Agarophyton vermiculophyllum and other invasive seaweeds
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Gaoge Wang, Minglei Hou, Shasha Wang, Yifei Ren, and Florian Weinberger
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0106 biological sciences ,Relative scarcity ,Ecology ,010604 marine biology & hydrobiology ,Biodiversity ,Aquatic Science ,Biology ,Oceanography ,Generalist and specialist species ,010603 evolutionary biology ,01 natural sciences ,Habitat ,14. Life underwater ,Ecology, Evolution, Behavior and Systematics ,Biotechnology - Abstract
Seaweed bioinvasions increasingly affect coastal environments around the world, which increases the need for predictive models and mitigation strategies. The biotic interactions between seaweed invaders and invaded communities are often considered a key determinant of invasion success and failure and we here revise the current evidence that the capacity of seaweed invaders to deter enemies in newly reached environments correlates with their invasion success. Particularly efficient chemical defences have been described for several of the more problematic seaweed invaders during the last decades. However, confirmed cases in which seaweed invaders confronted un-adapted enemies in newly gained environments with deterrents that were absent from these environments prior to the invasion (so-called “novel weapons”) are scarce, although an increasing number of invasive and non-invasive seaweeds are screened for defence compounds. More evidence exists that seaweeds may adapt defence intensities to changing pressure by biological enemies in newly invaded habitats. However, most of this evidence of shifting defence was gathered with only one particular model seaweed, the Asia-endemic red alga Agarophyton vermiculophyllum, which is particularly accessible for direct comparisons of native and non-native populations in common garden experiments. A. vermiculophyllum interacts with consumers, epibionts and bacterial pathogens and in most of these interactions, non-native populations have rather gained than lost defensive capacity relative to native conspecifics. The increases in the few examined cases were due to an increased production of broad-spectrum deterrents and the relative scarcity of specialized deterrents perhaps reflects the circumstance that seaweed consumers and epibionts are overwhelmingly generalists.
- Published
- 2021
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26. Contractile Force of Transplanted Cardiomyocytes Actively Supports Heart Function After Injury
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Tim Stüdemann, Judith Rössinger, Christoph Manthey, Birgit Geertz, Rajiven Srikantharajah, Constantin von Bibra, Aya Shibamiya, Maria Köhne, Antonius Wiehler, J. Simon Wiegert, Thomas Eschenhagen, and Florian Weinberger
- Subjects
Pluripotent Stem Cells ,Physiology (medical) ,Myocardium ,Guinea Pigs ,Animals ,Cell Differentiation ,Myocytes, Cardiac ,Cardiology and Cardiovascular Medicine ,Ventricular Function, Left - Abstract
Background: Transplantation of pluripotent stem cell–derived cardiomyocytes represents a promising therapeutic strategy for cardiac regeneration, and the first clinical studies in patients with heart failure have commenced. Yet, little is known about the mechanism of action underlying graft-induced benefits. Here, we explored whether transplanted cardiomyocytes actively contribute to heart function. Methods: We injected cardiomyocytes with an optogenetic off-on switch in a guinea pig cardiac injury model. Results: Light-induced inhibition of engrafted cardiomyocyte contractility resulted in a rapid decrease of left ventricular function in ≈50% (7/13) animals that was fully reversible with the offset of photostimulation. Conclusions: Our optogenetic approach demonstrates that transplanted cardiomyocytes can actively participate in heart function, supporting the hypothesis that the delivery of new force-generating myocardium can serve as a regenerative therapeutic strategy.
- Published
- 2022
27. Genome-scale signatures of adaptive gene expression changes in an invasive seaweed Gracilaria vermiculophylla
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Jin‐Xi Xiang, Mahasweta Saha, Kai‐Le Zhong, Quan‐Sheng Zhang, Di Zhang, Alexander Jueterbock, Stacy A. Krueger‐Hadfield, Gao‐Ge Wang, Florian Weinberger, and Zi‐Min Hu
- Subjects
Genetics ,Ecology, Evolution, Behavior and Systematics - Abstract
Invasive species can successfully and rapidly colonize new niches and expand ranges via founder effects and enhanced tolerance towards environmental stresses. However, the underpinning molecular mechanisms (i.e., gene expression changes) facilitating rapid adaptation to harsh environments are still poorly understood. The red seaweed Gracilaria vermiculophylla, which is native to the northwest Pacific but invaded North American and European coastal habitats over the last 100 years, provides an excellent model to examine whether enhanced tolerance at the level of gene expression contributed to its invasion success. We collected G. vermiculophylla from its native range in Japan and from two non-native regions along the Delmarva Peninsula (Eastern United States) and in Germany. Thalli were reared in a common garden for 4 months at which time we performed comparative transcriptome (mRNA) and microRNA (miRNA) sequencing. MRNA-expression profiling identified 59 genes that were differently expressed between native and non-native thalli. Of these genes, most were involved in metabolic pathways, including photosynthesis, abiotic stress, and biosynthesis of products and hormones in all four non-native sites. MiRNA-based target-gene correlation analysis in native/non-native pairs revealed that some target genes are positively or negatively regulated via epigenetic mechanisms. Importantly, these genes are mostly associated with metabolism and defence capability (e.g., metal transporter Nramp5, senescence-associated protein, cell wall-associated hydrolase, ycf68 protein and cytochrome P450-like TBP). Thus, our gene expression results indicate that resource reallocation to metabolic processes is most likely a predominant mechanism contributing to the range-wide persistence and adaptation of G. vermiculophylla in the invaded range. This study, therefore, provides molecular insight into the speed and nature of invasion-mediated rapid adaption.
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- 2022
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28. Immature human engineered heart tissues engraft in a guinea pig chronic injury model
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Constantin von Bibra, Aya Shibamiya, Andrea Bähr, Birgit Geertz, Maria Köhne, Tim Stuedemann, Jutta Starbatty, Nadja Hornaschewitz, Xinghai Li, Eckhard Wolf, Nikolai Klymiuk, Markus Krane, Christian Kupatt, Bernhard Hiebl, Thomas Eschenhagen, and Florian Weinberger
- Abstract
Engineered heart tissue (EHT) transplantation represents an innovative, regenerative approach for heart failure patients. Late preclinical trials are underway, and the first clinical trial has started in 2021. Preceding studies revealed functional recovery after implantation of in vitro-matured EHT in the subacute stage while transplantation in a chronic injury setting was less efficient. We hypothesized that the use of immature EHT patches (EHTIm) could improve cardiomyocytes (CM) engraftment. Chronic myocardial injury was induced in a guinea pig model (n=14). EHTIm (15×106 cells) were transplanted directly after casting. Functional consequences were assessed by serial echocardiography. Animals were sacrificed four weeks after transplantation and hearts were excised for histological analysis. Cryo-injury lead to large transmural scars amounting to 26% of the left ventricle. Grafts were identified by a positive staining for human Ku80 and dystrophin, remuscularizing 9% of the scar area on average. The CM density in the graft was higher compared to previous studies with in vitro-matured EHTs and showed a greater population of immature CM. Echocardiographic analysis showed a small improvement of left ventricular function after EHTIm transplantation. In a small translational proof-of-concept study human scale EHTIm patches (4.5×108 cells) were epicardially implanted on healthy pig hearts (n=2). In summary, we provide evidence that transplantation of immature EHT patches without pre-cultivation results in better cell engraftment.
- Published
- 2022
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29. A simple and flexible platform for optogenetic pacing in cardiac tissue engineering
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Bangfen Pan, Julius Hansen, Tim Stüdemann, Florian Weinberger, Thomas Eschenhagen, and Justus Stenzig
- Subjects
Cardiology and Cardiovascular Medicine ,Molecular Biology - Published
- 2022
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30. Engineered heart tissue with a pharmacological off-switch as a tool to study the influence of cardiac work on cardiomyocyte maturation
- Author
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Rajiven Srikantharajah, Tim Stüdemann, Christoph Manthey, Thomas Eschenhagen, and Florian Weinberger
- Subjects
Cardiology and Cardiovascular Medicine ,Molecular Biology - Published
- 2022
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31. A pathway to improve seaweed aquaculture through microbiota manipulation
- Author
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Jiasui Li, Florian Weinberger, Rocky de Nys, Torsten Thomas, and Suhelen Egan
- Subjects
Bioengineering ,Biotechnology - Abstract
Highlights: - Microbiota manipulation has been used to improve the health and performance of several eukaryotes (e.g., humans, agricultural plants, and aquaculture animals), yet until recently remained unexplored for seaweeds. - Seaweed cultivation is the largest aquaculture industry by volume and is rapidly expanding. Technological innovations are needed to improve productivity and meet future global demands. - Bacteria are known to promote growth, assist reproduction, and improve disease resistance in seaweeds. - Knowledge of seaweed–bacterial symbioses has recently been applied to manipulate host microbiota with demonstrated benefits to seaweeds at the laboratory scale. This provides a realistic and practical opportunity to use these at the scale required for seaweed aquaculture and environmental restoration. Eukaryotic hosts are associated with microbial communities that are critical to their function. Microbiota manipulation using beneficial microorganisms, for example, in the form of animal probiotics or plant growth-promoting microorganisms (PGPMs), can enhance host performance and health. Recently, seaweed beneficial microorganisms (SBMs) have been identified that promote the growth and development and/or improve disease resistance of seaweeds. This knowledge coincides with global initiatives seeking to expand and intensify seaweed aquaculture. Here, we provide a pathway with the potential to improve commercial cultivation of seaweeds through microbiota manipulation, highlighting that seaweed restoration practices can also benefit from further understanding SBMs and their modes of action. The challenges and opportunities of different approaches to identify and apply SBMs to seaweed aquaculture are discussed.
- Published
- 2022
32. Vegetation of the supralittoral and upper sublittoral zones of the Western German Baltic Sea coast: a phytosociological study
- Author
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Dmitry Afanasyev, Florian Weinberger, Sophie Steinhagen, and Shamil Abdullin
- Subjects
Plant Science ,Aquatic Science ,Ecology, Evolution, Behavior and Systematics - Abstract
Supralittoral and shallow water seaweed communities are particularly exposed to impacts such as climate change and disturbance by humans. Therefore, their classification, the study of composition, and the monitoring of their structural changes are particularly important. A phytosociological survey of the supralittoral and upper sublittoral vegetation of the South West Baltic Sea revealed eight phytobenthos communities with two variants comprising 35 taxa of macrophytes (18 taxa of Chlorophyta, 13 taxa of Rhodophyta and four taxa of Phaeophyceae, Ochrophyta). Five of the eight communities were dominated by Ulvales (Ulva intestinalis, Kornmannia leptoderma, and three Blidingia species), the other three by Fucus vesiculosus. Most Fucus vesiculosus-dominated communities contained U. intestinalis and U. linza as subdominants. Only one of the communities had until now been described as an association ( Ulvetum intestinalis Feldman 1937). The syntaxonomic composition of the investigated vegetation includes both phytocenoses with the domination of green algae ( Ulvetum intestinalis Feldman 1937 and communities of Blidingia marginata, unidentified Blidingia spp. and Kornmannia leptoderma), as well as a number of communities dominated by Fucus vesiculosus. Mainly boreal Atlantic species and cosmopolitans make up the bulk of the species in these associations.
- Published
- 2022
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33. Heart regeneration: from mouse to human
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Florian Weinberger and Thomas Eschenhagen
- Subjects
0301 basic medicine ,medicine.medical_specialty ,Physiology ,business.industry ,Regeneration (biology) ,medicine.disease ,Transplantation ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Pharmacotherapy ,Physiology (medical) ,Small animal ,Internal medicine ,Heart failure ,Cardiology ,Medicine ,Myocyte ,business ,Cardiomyocyte proliferation ,Reprogramming ,030217 neurology & neurosurgery - Abstract
The mammalian heart loses the ability to regenerate within the first few days after birth. Myocardial injury in the adult heart leads to an irreversible loss of vital myocardium and often results in heart failure. Current heart failure pharmacotherapy has reduced mortality considerably over the last few decades but it does not induce the formation of new myocardium. Cardiac regeneration is a highly ambitious goal but there are now three strategies that have consistently demonstrated a potential to provide new myocytes to the injured heart in preclinical models: Cardiomyocyte transplantation, stimulation of cardiomyocyte proliferation and direct reprogramming of non-myocytes to cardiomyocytes. This brief review presents these three strategies and discusses the current state from small animal models to clinical trials.
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- 2020
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34. Salinity and host drive Ulva-associated bacterial communities across the Atlantic-Baltic Sea gradient
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Luna M. van der Loos, Sofie D’hondt, Aschwin H. Engelen, Henrik Pavia, Gunilla B. Toth, Anne Willems, Florian Weinberger, Olivier De Clerck, and Sophie Steinhagen
- Subjects
DYNAMICS ,TOOLS ,Ecology ,Baltic Sea ,Evolution ,ZOOSPORES ,GREEN ,DIVERSITY ,Biology and Life Sciences ,Salinity gradient ,Bacterial communities ,VARIABILITY ,Ulva ,Behavior and Systematics ,PATTERNS ,Genetics ,ABUNDANCE ,Microbiome ,CHLOROPHYTA ,Ecology, Evolution, Behavior and Systematics - Abstract
The green seaweed Ulva is a model system to study seaweed-bacteria interactions, but the impact of environmental drivers on the dynamics of these interactions is little understood. In this study, we investigated the stability and variability of the seaweed-associated bacteria across the Atlantic-Baltic Sea salinity gradient. We characterized the bacterial communities of 15 Ulva sensu lato species along 2,000 km of coastline in a total of 481 samples. Our results demonstrate that the Ulva-associated bacterial composition was strongly structured by both salinity and host species (together explaining between 34% and 91% of the variation in the abundance of the different bacterial genera). The largest shift in the bacterial consortia coincided with the horohalinicum (5-8 PSU, known as the transition zone from freshwater to marine conditions). Low-salinity communities especially contained high relative abundances of Luteolibacter, Cyanobium, Pirellula, Lacihabitans and an uncultured Spirosomaceae, whereas high-salinity communities were predominantly enriched in Litorimonas, Leucothrix, Sulfurovum, Algibacter and Dokdonia. We identified a small taxonomic core community (consisting of Paracoccus, Sulfitobacter and an uncultured Rhodobacteraceae), which together contributed to 14% of the reads per sample, on average. Additional core taxa followed a gradient model, as more core taxa were shared between neighbouring salinity ranges than between ranges at opposite ends of the Atlantic-Baltic Sea gradient. Our results contradict earlier statements that Ulva-associated bacterial communities are taxonomically highly variable across individuals and largely stochastically defined. Characteristic bacterial communities associated with distinct salinity regions may therefore facilitate the host's adaptation across the environmental gradient. info:eu-repo/semantics/publishedVersion
- Published
- 2022
35. The Guinea Pig Model in Cardiac Regeneration Research; Current Tissue Engineering Approaches and Future Directions
- Author
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Tim Stüdemann and Florian Weinberger
- Published
- 2022
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36. A potential future Fontan modification: preliminary in vitro data of a pressure-generating tube from engineered heart tissue
- Author
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Maria Köhne, Charlotta Sophie Behrens, Tim Stüdemann, Constantin von Bibra, Eva Querdel, Aya Shibamiya, Birgit Geertz, Jakob Olfe, Ida Hüners, Stefan Jockenhövel, Michael Hübler, Thomas Eschenhagen, Jörg Siegmar Sachweh, Florian Weinberger, and Daniel Biermann
- Subjects
Pulmonary and Respiratory Medicine ,Fibrin ,Tissue Engineering ,Heart Ventricles ,Silicones ,Humans ,Myocytes, Cardiac ,Surgery ,General Medicine ,Cardiology and Cardiovascular Medicine - Abstract
European journal of cardio-thoracic surgery 62(2), (2022). doi:10.1093/ejcts/ezac111, Published by Oxford Univ. Press, Oxford
- Published
- 2022
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37. Draft genome and description of Waterburya agarophytonicola gen. nov. sp. nov. (Pleurocapsales, Cyanobacteria): a seaweed symbiont
- Author
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Florian Weinberger, Sergei Shalygin, Till Bayer, and Guido Bonthond
- Subjects
Cyanobacteria ,DNA, Bacterial ,Pleurocapsales ,Biology ,Microbiology ,Genome ,Holobiont ,03 medical and health sciences ,Symbiosis ,Genus ,RNA, Ribosomal, 16S ,Molecular Biology ,Gene ,Phylogeny ,030304 developmental biology ,Genetics ,0303 health sciences ,Original Paper ,Vitamin B12 ,030306 microbiology ,Gracilaria vermiculophylla ,General Medicine ,Sequence Analysis, DNA ,biology.organism_classification ,Seaweed ,Cobalamin ,Rhodophyta ,Cyanobiont - Abstract
This work introduces Waterburya agarophytonicola Bonthond and Shalygin gen. nov., sp. nov, a baeocyte producing cyanobacterium that was isolated from the rhodophyte Agarophyton vermiculophyllum (Ohmi) Gurgel et al., an invasive seaweed that has spread across the northern hemisphere. The new species genome reveals a diverse repertoire of chemotaxis and adhesion related genes, including genes coding for type IV pili assembly proteins and a high number of genes coding for filamentous hemagglutinin family (FHA) proteins. Among a genetic basis for the synthesis of siderophores, carotenoids and numerous vitamins, W. agarophytonicola is potentially capable of producing cobalamin (vitamin B12), for which A. vermiculophyllum is an auxotroph. With a taxonomic description of the genus and species and a draft genome, this study provides as a basis for future research, to uncover the nature of this geographically independent association between seaweed and cyanobiont.
- Published
- 2021
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38. Piezo2 is not an indispensable mechanosensor in murine cardiomyocytes
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Benjamin Kloth, Giulia Mearini, Florian Weinberger, Justus Stenzig, Birgit Geertz, Jutta Starbatty, Diana Lindner, Udo Schumacher, Hermann Reichenspurner, Thomas Eschenhagen, and Marc N. Hirt
- Subjects
Mice, Inbred C57BL ,Mice, Knockout ,Mice ,Multidisciplinary ,Angiotensin II ,Body Weight ,Isoproterenol ,Animals ,Myocytes, Cardiac ,Ion Channels ,Rats - Abstract
A short-term increase in ventricular filling leads to an immediate (Frank-Starling mechanism) and a slower (Anrep effect) rise in cardiac contractility, while long-term increased cardiac load (e.g., in arterial hypertension) decreases contractility. Whether these answers to mechanical tension are mediated by specific sensors in cardiomyocytes remains elusive. In this study, the piezo2 protein was evaluated as a potential mechanosensor. Piezo2 was found to be upregulated in various rat and mouse cardiac tissues upon mechanical or pharmacological stress. To investigate its function, C57BL/6J mice with homozygous cardiomyocyte-specific piezo2 knockout [Piezo2-KO] were created. To this end, α-MHC-Cre mice were crossed with homozygous “floxed” piezo2 mice. α-MHC-Cre mice crossed with wildtype mice served as controls [WT-Cre+]. In cardiomyocytes of Piezo2-KO mice, piezo2 mRNA was reduced by > 90% and piezo2 protein was not detectable. Piezo2-KO mice displayed no morphological abnormalities or altered cardiac function under nonstressed conditions. In a subsequent step, hearts of Piezo2-KO or WT-Cre+-mice were stressed by either three weeks of increased afterload (angiotensin II, 2.5 mg/kg/day) or one week of hypercontractility (isoprenaline, 30 mg/kg/day). As expected, angiotensin II treatment in WT-Cre+-mice resulted in higher heart and lung weight (per body weight, + 38%, + 42%), lower ejection fraction and cardiac output (− 30%, − 39%) and higher left ventricular anterior and posterior wall thickness (+ 34%, + 37%), while isoprenaline led to higher heart weight (per body weight, + 25%) and higher heart rate and cardiac output (+ 24%, + 54%). The Piezo2-KO mice reacted similarly with the exception that the angiotensin II-induced increases in wall thickness were blunted and the isoprenaline-induced increase in cardiac output was slightly less pronounced. As cardiac function was neither severely affected under basal nor under stressed conditions in Piezo2-KO mice, we conclude that piezo2 is not an indispensable mechanosensor in cardiomyocytes.
- Published
- 2021
39. Generation of human engineered heart tissue with a chemo- and optogenetic Off-On switch
- Author
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Judith Rössinger, Tim Stüdemann, Aya Shibamiya, Torsten Christ, Thomas Eschenhagen, and Florian Weinberger
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Cardiology and Cardiovascular Medicine ,Molecular Biology - Published
- 2022
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40. Engineered heart tissue and optogenetics – A powerful and versatile combination
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Karl-Felix Müller, Bangfen Pan, Julius Hansen, Julia Krause, Grit Höppner, Tim Stüdemann, Ingke Braren, Florian Weinberger, Arne Hansen, Christine E. Gee, Torsten Christ, Thomas Eschenhagen, and Justus Stenzig
- Subjects
Cardiology and Cardiovascular Medicine ,Molecular Biology - Published
- 2022
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41. Cross-Host Protection of Marine Bacteria Against Macroalgal Disease
- Author
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Jiasui, Li, Florian, Weinberger, Mahasweta, Saha, Marwan E, Majzoub, and Suhelen, Egan
- Abstract
Despite an increasing awareness of disease impacts on both cultivated and native seaweed populations, the development of marine probiotics has been limited and predominately focused on farmed animals. Bleaching (loss of thallus pigmentation) is one of the most prevalent diseases observed in marine macroalgae. Endemic probiotic bacteria have been characterized to prevent bleaching disease in red macroalgae Agarophyton vermiculophyllum and Delisea pulchra; however, the extent to which probiotic strains provide cross-protection to non-endemic hosts and the influence of native microbiota remain unknown. Using A. vermiculophyllum as a model, we demonstrate that co-inoculation with the pathogen Pseudoalteromonas arctica G-MAN6 and D. pulchra probiotic strain Phaeobacter sp. BS52 or Pseudoalteromonas sp. PB2-1 reduced the disease risks compared to the pathogen only treatment. Moreover, non-endemic probiotics outperformed the endemic probiotic strain Ralstonia sp. G-NY6 in the presence of the host natural microbiota. This study highlights how the native microbiota can impact the effectiveness of marine probiotics and illustrates the potential of harnessing probiotics that can function across different hosts to mitigate the impact of emerging marine diseases.
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- 2021
42. Microbial 'gardening' by a seaweed holobiont: Surface metabolites attract protective and deter pathogenic epibacterial settlement
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Florian Weinberger and Mahasweta Saha
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0106 biological sciences ,Rhizosphere ,Ecology ,Host (biology) ,ved/biology ,ved/biology.organism_classification_rank.species ,Plant Science ,15. Life on land ,Biology ,010603 evolutionary biology ,01 natural sciences ,Macrophyte ,Holobiont ,Aquatic plant ,Terrestrial plant ,Bioassay ,Microbiome ,Ecology, Evolution, Behavior and Systematics ,010606 plant biology & botany - Abstract
1. Epimicrobial communities on seaweed surfaces usually contain not only potentially pathogenic but also potentially beneficial micro‐organisms. Capacity of terrestrial plants for chemically mediated recruitment, that is, “gardening” of bacterial communities in the rhizosphere was recently demonstrated. Empirical evidence directly linking such chemical “gardening” with the beneficial role of gardened microbes in terrestrial plants is rare and largely missing for aquatic macrophytes. 2. Here, we demonstrate that our model invasive seaweed holobiont Agarophyton vermiculophyllum possesses beneficial microbiota on its surface that provide protection from bacterial pathogens. Metabolites from the algal holobiont’s surface reduced settlement of opportunistic pathogens but attracted protective epibacterial settlement. 3. We tested 58 different bacterial species (isolated from the surface of A. vermiculophyllum) individually in tip bleaching assays. Kordia algicida was identified as a “significant pathogen” inducing a bleaching disease. In addition, nine other species significantly reduced the risk of algal bleaching and were thus “significantly protective”. Additionally, two “potential pathogens” and 10 “potential protectors” were identified. When 19 significant and potential protectors and 3 significant and potential pathogens were tested together, the protective strains fully prevented bleaching, suggesting that a component of A. vermiculophyllum’s epimicrobiome provides an associational defence against pathogens. Chemically mediated selective recruitment of microbes was demonstrated in bioassays, where A. vermiculophyllum surface metabolites attracted the settlement of protective strains, but reduced settlement of pathogens. 4. Synthesis. The capacity of an aquatic macrophyte to chemically “garden” protective micro‐organisms to the benefit of strengthened disease resistance is demonstrated for the first time. Such a role of surface chemistry in “gardening” of microbes as found in the current study could also be applicable to other host plant—microbe interactions. Our results may open new avenues towards manipulation of the surface microbiome of seaweeds via chemical “gardening,” enhancing sustainable production of healthy seaweeds.
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- 2019
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43. Human engineered heart tissue transplantation in a guinea pig chronic injury model
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Constantin von Bibra, Aya Shibamiya, Birgit Geertz, Eva Querdel, Maria Köhne, Tim Stüdemann, Jutta Starbatty, Felix N. Schmidt, Arne Hansen, Bernhard Hiebl, Thomas Eschenhagen, and Florian Weinberger
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Cicatrix ,Tissue Engineering ,Heart Ventricles ,Guinea Pigs ,Induced Pluripotent Stem Cells ,Animals ,Humans ,Myocytes, Cardiac ,Cardiology and Cardiovascular Medicine ,Molecular Biology - Abstract
Myocardial injury leads to an irreversible loss of cardiomyocytes (CM). The implantation of human engineered heart tissue (EHT) has become a promising regenerative approach. Previous studies exhibited beneficial, dose-dependent effects of human induced pluripotent stem cell (hiPSC)-derived EHT patch transplantation in a guinea pig model in the subacute phase of myocardial injury. Yet, advanced heart failure often results from a chronic remodeling process. Therefore, from a clinical standpoint it is worthwhile to explore the ability to repair the chronically injured heart. In this study human EHT patches were generated from hiPSC-derived CMs (15 × 10
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- 2021
44. In vivo grafting of large engineered heart tissue patches for cardiac repair
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Rasheda A. Chowdhury, Marina Reinsch, Godfrey L. Smith, Dafni Pantou, Mayooran Shanmuganathan, Florian Weinberger, Fu Siong Ng, Thomas Eschenhagen, Liam Couch, Thomas J. Owen, Oisín King, Cesare M. Terracciano, David S. Pitcher, Daniel J. Stuckey, Nicholas S. Peters, Balvinder S. Handa, Richard J. Jabbour, Brian Wang, Pragati Pandey, Michael Dunne, Rachel C. Myles, Worrapong Kit-Anan, Filippo Perbellini, Fotios G. Pitoulis, Sian E. Harding, and British Heart Foundation
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Cardiac function curve ,medicine.medical_specialty ,Contraction (grammar) ,Induced Pluripotent Stem Cells ,Myocardial Infarction ,Cardiology ,Human stem cells ,Stem cells ,Arrhythmias ,Fibrin ,In vivo ,Internal medicine ,Animals ,Humans ,Medicine ,Myocardial infarction ,Cardiac Surgical Procedures ,Heart Failure ,Tissue Engineering ,biology ,Guided Tissue Regeneration ,business.industry ,Myocardium ,Arrhythmias, Cardiac ,Hydrogels ,General Medicine ,medicine.disease ,Cardiovascular disease ,Myocardial Contraction ,Heart failure ,biology.protein ,Rabbits ,Stem cell ,business ,Ex vivo ,Research Article - Abstract
Engineered heart tissue (EHT) strategies, by combining cells within a hydrogel matrix, may be a novel therapy for heart failure. EHTs restore cardiac function in rodent injury models, but more data are needed in clinically relevant settings. Accordingly, an upscaled EHT patch (2.5 cm × 1.5 cm × 1.5 mm) consisting of up to 20 million human induced pluripotent stem cell-derived cardiomyocytes (hPSC-CMs) embedded in a fibrin-based hydrogel was developed. A rabbit myocardial infarction model was then established to test for feasibility and efficacy. Our data showed that hPSC-CMs in EHTs became more aligned over 28 days and had improved contraction kinetics and faster calcium transients. Blinded echocardiographic analysis revealed a significant improvement in function in infarcted hearts that received EHTs, along with reduction in infarct scar size by 35%. Vascularization from the host to the patch was observed at week 1 and stable to week 4, but electrical coupling between patch and host heart was not observed. In vivo telemetry recordings and ex vivo arrhythmia provocation protocols showed that the patch was not pro-arrhythmic. In summary, EHTs improved function and reduced scar size without causing arrhythmia, which may be due to the lack of electrical coupling between patch and host heart.
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- 2021
45. The role of host promiscuity in the invasion process of a seaweed holobiont
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Guido Bonthond, Nadja Stärck, Masahiro Nakaoka, Stacy A. Krueger-Hadfield, Till Bayer, Sven Künzel, Gaoge Wang, and Florian Weinberger
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0106 biological sciences ,Range (biology) ,ved/biology.organism_classification_rank.species ,010603 evolutionary biology ,01 natural sciences ,Microbiology ,Article ,Invasive species ,Intraspecific competition ,Microbial ecology ,03 medical and health sciences ,Algae ,Terrestrial plant ,Humans ,Symbiosis ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,0303 health sciences ,biology ,Ecology ,Host (biology) ,ved/biology ,Microbiota ,15. Life on land ,Seaweed ,biology.organism_classification ,Holobiont ,Promiscuity ,Rhodophyta ,Molecular ecology ,Introduced Species - Abstract
Invasive species are co-introduced with microbiota from their native range and also interact with microbiota found in the novel environment to which they are introduced. Host flexibility toward microbiota, or host promiscuity, is an important trait underlying terrestrial plant invasions. To test whether host promiscuity may be important in macroalgal invasions, we experimentally simulated an invasion in a common garden setting, using the widespread invasive macroalga Agarophyton vermiculophyllum as a model invasive seaweed holobiont. After disturbing the microbiota of individuals from native and non-native populations with antibiotics, we monitored the microbial succession trajectories in the presence of a new source of microbes. Microbial communities were strongly impacted by the treatment and changed compositionally and in terms of diversity but recovered functionally by the end of the experiment in most respects. Beta-diversity in disturbed holobionts strongly decreased, indicating that different populations configure more similar –or more common– microbial communities when exposed to the same conditions. This decline in beta-diversity occurred not only more rapidly, but was also more pronounced in non-native populations, while individuals from native populations retained communities more similar to those observed in the field. This study demonstrates that microbial communities of non-native A. vermiculophyllum are more flexibly adjusted to the environment and suggests that an intraspecific increase in host promiscuity has promoted the invasion process of A. vermiculophyllum. This phenomenon may be important among invasive macroalgal holobionts in general.
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- 2021
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46. DNA barcoding of the German green supralittoral zone indicates the distribution and phenotypic plasticity of Blidingia species and reveals Blidingia cornuta sp. nov
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Florian Weinberger, Sophie Steinhagen, and Luisa Düsedau
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0106 biological sciences ,0303 health sciences ,Phenotypic plasticity ,biology ,business.industry ,010604 marine biology & hydrobiology ,Ontogeny ,Distribution (economics) ,Zoology ,Plant Science ,biology.organism_classification ,01 natural sciences ,DNA barcoding ,Supralittoral zone ,03 medical and health sciences ,Phylogeography ,Blidingia ,Tufa ,14. Life underwater ,business ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology - Abstract
In temperate and subarctic regions of the Northern Hemisphere, green algae of the genus Blidingia are a substantial and environment‐shaping component of the upper and mid‐supralittoral zones. However, taxonomic knowledge on these important green algae is still sparse. In the present study, the molecular diversity and distribution of Blidingia species in the German State of Schleswig‐Holstein was examined for the first time, including Baltic Sea and Wadden Sea coasts and the off‐shore island of Helgoland (Heligoland). In total, three entities were delimited by DNA barcoding, and their respective distributions were verified (in decreasing order of abundance: Blidingia marginata, Blidingia cornuta sp. nov. and Blidingia minima). Our molecular data revealed strong taxonomic discrepancies with historical species concepts, which were mainly based on morphological and ontogenetic characters. Using a combination of molecular, morphological and ontogenetic approaches, we were able to disentangle previous mis‐identifications of B. minima and demonstrate that the distribution of B. minima is more restricted than expected within the examined area. Blidingia minima, the type of the genus name Blidingia, is epitypified within this study by material collected at the type locality Helgoland. In contrast with B. minima, B. marginata shows a higher phenotypic plasticity and is more widely distributed in the study area than previously assumed. The third entity, Blidingia cornuta sp. nov., is clearly delimited from other described Blidingia species, due to unique characters in its ontogenetic development and morphology as well as by its tufA and rbcL sequences.
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- 2021
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47. A tufA metabarcoding approach for Ulva and related seaweeds
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Florian Weinberger, Guido Bonthond, Sophie Steinhagen, and Rolf Karez
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Ulva ,010504 meteorology & atmospheric sciences ,Tufa ,Botany ,Metabarcoding ,General Engineering ,14. Life underwater ,15. Life on land ,010501 environmental sciences ,Biology ,01 natural sciences ,0105 earth and related environmental sciences - Abstract
Ulva-like green algae are notoriously difficult to distinguish due to their morphological variability and/or similarity. DNA barcoding approaches are therefore currently essential for their reliable identification. However, such approaches often fail when rare or inconspicuous species are to be detected in large mixed populations of Ulva species, for example, at early stages following the introduction of species into new habitats. We therefore developed a detection method based on next-generation DNA sequencing. The approach is suitable for the analysis of DNA traces in preserved water samples or in particles enriched by filtration from such samples. A new pair of primers was designed to amplify a 475 bp segment within the tufA marker gene. The primers were relatively group specific. 68.5% of all reads obtained after quality filtering represented the genus Ulva, 11.1% other Ulvophyceae, and only 20% other Chlorophyta, despite their relatively higher abundance in phytoplankton. The relatively short target amplicon still allows good differentiation of Ulvales and Ulothrichales at the species level. Using a database containing tufA sequences of 879 species - 281 of which were Ulvophyceae and 35 Ulva - we were able to detect mostly Ulvophyceae that had been previously detected in our study area in northern Germany using Sanger sequencing. However, the number of species detected at individual sites was generally higher than in previous studies, which could be due to drifting DNA: Analysis of samples collected at different distances from shore suggests that a sample collected at a given site may be influenced by Ulvophyceae within a radius of up to about 1 km in winter. In summer, this radius is reduced to less than 100 m, possibly due to the less frequent occurrence of strong wind events. Nonetheless, rare species may be detected with this new approach: At one site, an undescribed Blidingia species that was not previously known from our study area was repeatedly detected. Based on these findings, the species was searched for and found, and its identity confirmed by traditional tufA barcoding.
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- 2021
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48. Human Engineered Heart Tissue Patches Remuscularize the Injured Heart in a Dose-Dependent Manner
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Bärbel M. Ulmer, Hermann Reichenspurner, Marina Reinsch, Nadja Hornaschewitz, Aya Shibamiya, Torsten Christ, Florian Weinberger, Markus Krane, Deniz Köse, Marc D Lemoine, Ingra Mannhardt, Jascha Sani, Tobias Krause, Tim Stüdemann, Svenja Reich, Marta Lemme, Andrea Bähr, Constantin V. von Bibra, Mirja L Schulze, Simon Pecha, Nikolai Klymiuk, Maria Köhne, Eva Querdel, Arne Hansen, Christian Kupatt, L. Castro, Birgit Geertz, Yusuf Nejahsie, and Thomas Eschenhagen
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medicine.medical_specialty ,Guinea Pigs ,Dose dependence ,regenerative medicine ,030204 cardiovascular system & hematology ,Regenerative medicine ,03 medical and health sciences ,0302 clinical medicine ,Cell transplantation ,stem cells ,Original Research Articles ,Physiology (medical) ,Internal medicine ,medicine ,Animals ,Humans ,Myocytes, Cardiac ,cell transplantation ,030304 developmental biology ,0303 health sciences ,Tissue Engineering ,business.industry ,Myocardium ,medicine.disease ,Transplantation ,Disease Models, Animal ,Heart failure ,ComputingMethodologies_DOCUMENTANDTEXTPROCESSING ,Cardiology ,Stem cell ,Cardiology and Cardiovascular Medicine ,business - Abstract
Supplemental Digital Content is available in the text., Background: Human engineered heart tissue (EHT) transplantation represents a potential regenerative strategy for patients with heart failure and has been successful in preclinical models. Clinical application requires upscaling, adaptation to good manufacturing practices, and determination of the effective dose. Methods: Cardiomyocytes were differentiated from 3 different human induced pluripotent stem cell lines including one reprogrammed under good manufacturing practice conditions. Protocols for human induced pluripotent stem cell expansion, cardiomyocyte differentiation, and EHT generation were adapted to substances available in good manufacturing practice quality. EHT geometry was modified to generate patches suitable for transplantation in a small-animal model and perspectively humans. Repair efficacy was evaluated at 3 doses in a cryo-injury guinea pig model. Human-scale patches were epicardially transplanted onto healthy hearts in pigs to assess technical feasibility. Results: We created mesh-structured tissue patches for transplantation in guinea pigs (1.5×2.5 cm, 9–15×106 cardiomyocytes) and pigs (5×7 cm, 450×106 cardiomyocytes). EHT patches coherently beat in culture and developed high force (mean 4.6 mN). Cardiomyocytes matured, aligned along the force lines, and demonstrated advanced sarcomeric structure and action potential characteristics closely resembling human ventricular tissue. EHT patches containing ≈4.5, 8.5, 12×106, or no cells were transplanted 7 days after cryo-injury (n=18–19 per group). EHT transplantation resulted in a dose-dependent remuscularization (graft size: 0%–12% of the scar). Only high-dose patches improved left ventricular function (+8% absolute, +24% relative increase). The grafts showed time-dependent cardiomyocyte proliferation. Although standard EHT patches did not withstand transplantation in pigs, the human-scale patch enabled successful patch transplantation. Conclusions: EHT patch transplantation resulted in a partial remuscularization of the injured heart and improved left ventricular function in a dose-dependent manner in a guinea pig injury model. Human-scale patches were successfully transplanted in pigs in a proof-of-principle study.
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- 2021
49. Towards standardization of echocardiography for the evaluation of left ventricular function in adult rodents: a position paper of the ESC Working Group on Myocardial Function
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Michele Ciccarelli, Evangelos P. Daskalopoulos, Luc Bertrand, Mauro Giacca, Florian Leuschner, Matteo Dal Ferro, Emilio Hirsch, Manuel Mayr, James Cimino, Michele Russo, Wolfgang A. Linke, Christophe Beauloye, André P. Lourenço, Antonio Cannatà, Lucie Carrier, Johannes Backs, Inês Falcão-Pires, Nazha Hamdani, Alessia Paldino, Pierluigi Lesizza, Florian Weinberger, Bruno Pinamonti, Serena Zacchigna, Dana Dawson, Ilona Cuijpers, Gianfranco Sinagra, Marco Oliveti, Diederik W. D. Kuster, Izhak Kehat, Stephane Heymans, Simone Vodret, Martine de Boer, Thomas Eschenhagen, Carlo G. Tocchetti, Alessandra Ghigo, Dirk J. Duncker, Jolanda van der Velden, Daniela Miranda-Silva, Thomas Thum, Zacchigna, Serena, Paldino, Alessia, Falcão-Pires, Inê, Daskalopoulos, Evangelos P, Dal Ferro, Matteo, Vodret, Simone, Lesizza, Pierluigi, Cannatà, Antonio, Miranda-Silva, Daniela, Lourenço, André P, Pinamonti, Bruno, Sinagra, Gianfranco, Weinberger, Florian, Eschenhagen, Thoma, Carrier, Lucie, Kehat, Izhak, Tocchetti, Carlo G, Russo, Michele, Ghigo, Alessandra, Cimino, Jame, Hirsch, Emilio, Dawson, Dana, Ciccarelli, Michele, Oliveti, Marco, Linke, Wolfgang A, Cuijpers, Ilona, Heymans, Stephane, Hamdani, Nazha, de Boer, Martine, Duncker, Dirk, Kuster, Diederik, van der Velden, Jolanda, Beauloye, Christophe, Bertrand, Luc, Mayr, Manuel, Giacca, Mauro, Leuschner, Florian, Backs, Johanne, Thum, Thomas, UCL - SSS/IREC/CARD - Pôle de recherche cardiovasculaire, and UCL - (SLuc) Service de pathologie cardiovasculaire
- Subjects
0301 basic medicine ,Cardiac function curve ,medicine.medical_specialty ,Biomedical Research ,Consensus ,Diastolic function ,Standardization ,systolic function ,Systole ,Physiology ,Diastole ,030204 cardiovascular system & hematology ,Working Group on Myocardial Function of the European Society of Cardiology ,Ventricular Function, Left ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Physiology (medical) ,Internal medicine ,medicine ,Animals ,Animal model ,Pathological ,standardization ,Ventricular function ,business.industry ,Systolic function ,Echocardiography ,Animal models ,Myocardial function ,animal models ,Rats ,Disease Models, Animal ,030104 developmental biology ,Cardiovascular Diseases ,Cardiology ,Position paper ,Cardiology and Cardiovascular Medicine ,business - Abstract
Echocardiography is a reliable and reproducible method to assess non-invasively cardiac function in clinical and experimental research. Significant progress in the development of echocardiographic equipment and transducers has led to the successful translation of this methodology from humans to rodents, allowing for the scoring of disease severity and progression, testing of new drugs, and monitoring cardiac function in genetically modified or pharmacologically treated animals. However, as yet, there is no standardization in the procedure to acquire echocardiographic measurements in small animals. This position paper focuses on the appropriate acquisition and analysis of echocardiographic parameters in adult mice and rats, and provides reference values, representative images, and videos for the accurate and reproducible quantification of left ventricular function in healthy and pathological conditions. ispartof: CARDIOVASCULAR RESEARCH vol:117 issue:1 pages:43-59 ispartof: location:England status: published
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- 2021
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50. Induction of Phlorotannins and Gene Expression in the Brown Macroalga Fucus vesiculosus in Response to the Herbivore Littorina littorea
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Emeline, Creis Bendelac, Ludovic, Delage, Laurent, Vallet, Catherine, Leblanc, Kruse, Inken, Erwan, Ar Gall, Florian, Weinberger, Philippe, Potin, Emeline, Creis Bendelac, Ludovic, Delage, Laurent, Vallet, Catherine, Leblanc, Kruse, Inken, Erwan, Ar Gall, Florian, Weinberger, and Philippe, Potin
- Abstract
Mechanisms related to the induction of phlorotannin biosynthesis in marine brown algae remain poorly known. Several studies undertaken on fucoid species have shown that phlorotannins accumulate in the algae for several days or weeks after being exposed to grazing, and this is measured by direct quantification of soluble phenolic compounds. In order to investigate earlier inducible responses involved in phlorotannin metabolism, Fucus vesiculosus was studied between 6 and 72 h of grazing by the sea snail Littorina littorea. In this study, the quantification of soluble phenolic compounds was complemented by a Quantitative real-time PCR (qRT-PCR) approach applied on genes that are potentially involved in either the phlorotannin metabolism or stress responses. Soluble phlorotannin levels remained stable during the kinetics and increased significantly only after 12 h in the presence of grazers, compared to the control, before decreasing to the initial steady state for the rest of the kinetics. Under grazing conditions, the expression of vbpo, cyp450 and ast6 genes was upregulated, respectively, at 6 h, 12 h and 24 h, and cyp450 gene was downregulated after 72 h. Interestingly, the pksIII gene involved in the synthesis of phloroglucinol was overexpressed under grazing conditions after 24 h and 72 h. This study supports the hypothesis that phlorotannins are able to provide an inducible chemical defense under grazing activity, which is regulated at different stages of the stress response.
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- 2021
- Full Text
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