1. KneeBones3Dify: Open-source software for segmentation and 3D reconstruction of knee bones from MRI data
- Author
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Lucia Maddalena, Diego Romano, Francesco Gregoretti, Gianluca De Lucia, Laura Antonelli, Ernesto Soscia, Gabriele Pontillo, Carla Langella, Flavio Fazioli, Carla Giusti, and Rosario Varriale
- Subjects
Knee bone segmentation ,Python ,GPU ,Parallel computing ,3D bone models for printing ,Computer software ,QA76.75-76.765 - Abstract
KneeBones3Dify is a Python software tool that supports detailed analysis of knee pathologies and preoperative planning for knee replacement surgery based on patient-specific 3D models. It produces printable 3D bones in a stereolithography file format by automatically segmenting the femur, patella, and tibia from high-resolution Magnetic Resonance (MR) images with nearly isotropic voxel dimensions. Our software avoids time-consuming and subjective manual segmentation by specialists, offering an accurate and efficient alternative employing GPU acceleration. We validated the results by computing objective metrics against the ground truth voxel-wise segmentation produced for a 3D MR image by specialists, who also confirmed the reconstruction accuracy qualitatively. KneeBones3Dify and annotated data are publicly available, enabling broader research and clinical practice use.
- Published
- 2024
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