7 results on '"Flachbartova Z"'
Search Results
2. Joining the in vitro immunization of alpaca lymphocytes and phage display: rapid and cost effective pipeline for sdAb synthesis.
- Author
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Comor L, Dolinska S, Bhide K, Pulzova L, Jiménez-Munguía I, Bencurova E, Flachbartova Z, Potocnakova L, Kanova E, and Bhide M
- Subjects
- Animals, Antigens, Surface immunology, Bacterial Outer Membrane Proteins immunology, Bacterial Vaccines immunology, Bacteriophages genetics, Cell Surface Display Techniques economics, Cell Surface Display Techniques methods, Cost-Benefit Analysis, Enzyme-Linked Immunosorbent Assay, Interleukin-2 immunology, Interleukin-4 immunology, Lipoproteins immunology, Lymphocyte Activation, Single-Domain Antibodies immunology, B-Lymphocytes immunology, Camelids, New World immunology, Immunization economics, Immunization methods, Peptide Library, Single-Domain Antibodies biosynthesis
- Abstract
Background: Camelids possess unique functional heavy chain antibodies, which can be produced and modified in vitro as a single domain antibody (sdAb or nanobody) with full antigen binding ability. Production of sdAb in conventional manner requires active immunization of Camelidae animal, which is laborious, time consuming, costly and in many cases not feasible (e.g. in case of highly toxic or infectious antigens)., Results: In this study, we describe an alternative pipeline that includes in vitro stimulation of naïve alpaca B-lymphocytes by antigen of interest (in this case endothelial cell binding domain of OspA of Borrelia) in the presence of recombinant alpaca interleukins 2 and 4, construction of sdAb phage library, selection of antigen specific sdAb expressed on phages (biopanning) and confirmation of binding ability of sdAb to the antigen. By joining the in vitro immunization and the phage display ten unique phage clones carrying sdAb were selected. Out of ten, seven sdAb showed strong antigen binding ability in phage ELISA. Furthermore, two soluble forms of sdAb were produced and their differential antigen binding affinity was measured with bio-layer interferometry., Conclusion: A proposed pipeline has potential to reduce the cost substantially required for maintenance of camelid herd for active immunization. Furthermore, in vitro immunization can be achieved within a week to enrich mRNA copies encoding antigen-specific sdAbs in B cell. This rapid and cost effective pipeline can help researchers to develop efficiently sdAb for diagnostic and therapeutic purposes.
- Published
- 2017
- Full Text
- View/download PDF
3. Identification of B-cell epitopes of Borrelia burgdorferi outer surface protein C by screening a phage-displayed gene fragment library.
- Author
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Pulzova L, Flachbartova Z, Bencurova E, Potocnakova L, Comor L, Schreterova E, and Bhide M
- Subjects
- Amino Acid Sequence, Antibodies, Bacterial blood, Antibodies, Bacterial immunology, Antibody Affinity, Antibody Specificity, Antigens, Bacterial chemistry, Antigens, Bacterial genetics, Bacterial Outer Membrane Proteins chemistry, Bacterial Outer Membrane Proteins genetics, Borrelia burgdorferi genetics, Epitope Mapping, Epitopes, B-Lymphocyte chemistry, Epitopes, B-Lymphocyte genetics, Humans, Lyme Disease diagnosis, Protein Binding, Antigens, Bacterial immunology, Bacterial Outer Membrane Proteins immunology, Borrelia burgdorferi immunology, Cell Surface Display Techniques, Epitopes, B-Lymphocyte immunology, Lyme Disease immunology, Lyme Disease microbiology, Peptide Library
- Abstract
Outer surface protein C (OspC) of Borrelia stimulates remarkable immune responses during early infection and is therefore currently considered a leading diagnostic and vaccine candidate. The sensitivity and specificity of serological tests based on whole protein OspC for diagnosis of Lyme disease are still unsatisfactory. Minimal B-cell epitopes are key in the development of reliable immunodiagnostic tools. Using OspC fragments displayed on phage particles (phage library) and anti-OspC antibodies isolated from sera of naturally infected patients, six OspC epitopes capable of distinguishing between LD patient and healthy control sera were identified. Three of these epitopes are located at the N-terminus (OspC E1 aa19-27, OspC E2 aa38-53, OspC E3 aa62-66) and three at the C-terminal end (OspC E4 aa155-163, OspC E5 aa184-190 and OspC E6 aa201-207). OspC E1, E4 and E6 were highly conserved among LD related Borreliae. To our knowledge, epitopes OspC E2, E3 and E5 were identified for the first time in this study. Minimal B-cell epitopes may provide fundamental data for the development of multi-epitope-based diagnostic tools for Lyme disease., (© 2016 The Societies and John Wiley & Sons Australia, Ltd.)
- Published
- 2016
- Full Text
- View/download PDF
4. A rapid and simple pipeline for synthesis of mRNA-ribosome-V(H)H complexes used in single-domain antibody ribosome display.
- Author
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Bencurova E, Pulzova L, Flachbartova Z, and Bhide M
- Subjects
- Animals, Camelus, DNA Primers, Escherichia coli genetics, Luminescent Proteins chemistry, Luminescent Proteins genetics, Luminescent Proteins metabolism, RNA, Messenger metabolism, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins metabolism, Ribosomes metabolism, Single-Domain Antibodies chemistry, Single-Domain Antibodies metabolism, Red Fluorescent Protein, Cloning, Molecular methods, Genetic Vectors genetics, RNA, Messenger genetics, Ribosomes genetics, Single-Domain Antibodies genetics
- Abstract
The single-domain antibody (VHH) is a promising building block for a number of antibody-based applications. Ribosome display can successfully be used in the production of VHH. However, the construction of the expression cassette, confirmation of the translation and proper folding of the nascent chain, and the purification of the ribosome complexes, remain cumbersome tasks. Additionally, selection of the most suitable expression system can be challenging. We have designed primers that will amplify virtually all Camelidae VHH. With the help of a double-overlap extension (OE) polymerase chain reaction (PCR) we have fused VHH with the F1 fragment (T7 promoter and species-independent translation sequence) and the F2 fragment (mCherry, Myc-tag, tether, SecM arrest sequence and 3' stem loop) to generate a full-length DNA cassette. OE-PCR generated fragments were incubated directly with cell-free lysates (Leishmania torentolae, rabbit reticulocyte or E. coli) for the synthesis of mRNA-VHH-mCherry-ribosome complexes in vitro. Alternatively, the cassette was ligated in pQE-30 vector and transformed into E. coli to produce ribosome complexes in vivo. The results showed that the same expression cassette could be used to synthesize ribosome complexes with different expression systems. mCherry reporter served to confirm the synthesis and proper folding of the nascent chain, Myc-tag was useful in the rapid purification of ribosome complexes, and combination of the SecM sequence and 3' stem loop made the cassette universal, both for cells-free and E. coli in vivo. This rapid and universal pipeline can effectively be used in antibody ribosome display and VHH production.
- Published
- 2015
- Full Text
- View/download PDF
5. Deciphering the protein interaction in adhesion of Francisella tularensis subsp. holarctica to the endothelial cells.
- Author
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Bencurova E, Kovac A, Pulzova L, Gyuranecz M, Mlynarcik P, Mucha R, Vlachakis D, Kossida S, Flachbartova Z, and Bhide M
- Subjects
- Animals, Cells, Cultured, Protein Binding, Rats, Bacterial Adhesion, Endothelial Cells microbiology, Fimbriae Proteins metabolism, Francisella tularensis physiology, Host-Pathogen Interactions, Intercellular Adhesion Molecule-1 metabolism
- Abstract
Extracellular form of Francisella is able to cross various cell barriers and invade multiple organs, such as skin, liver, lung and central nervous system. Transient adhesion of Francisella to endothelial cells may trigger the process of translocation. In this report, we showed that Francisella tularensis subsp. holarctica (Fth) is able to adhere to the endothelial cells, while ICAM-1 may serve as an adhesion molecule for Fth. Pull down and affinity ligand binding assays indicated that the PilE4 could be the probable ligand for ICAM-1. Further deciphering of this ligand:receptor interaction revealed that PilE4 interacts with Ig-like C2-type 1 domain of ICAM-1. To corroborate the role of PilE4 and ICAM-1 interaction in adhesion of extracellular form of Fth to endothelial cells, ICAM-1 was blocked with monoclonal anti-ICAM-1 antibody prior to the incubation with Fth and numbers of adherent bacteria were counted. Blocking of the ICAM-1 significantly reduced (500-fold, P < 0.05) number of adherent Fth compared to unblocked cells. PilE4:ICAM-1 interaction unfolded here may provide a new perspective on molecules involved in the adhesion of extracellular form of Francisella to endothelial cells and probably its translocation across endothelial barriers., (Copyright © 2015 Elsevier Ltd. All rights reserved.)
- Published
- 2015
- Full Text
- View/download PDF
6. Molecular hydrogen in drinking water protects against neurodegenerative changes induced by traumatic brain injury.
- Author
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Dohi K, Kraemer BC, Erickson MA, McMillan PJ, Kovac A, Flachbartova Z, Hansen KM, Shah GN, Sheibani N, Salameh T, and Banks WA
- Subjects
- Animals, Antioxidants metabolism, Brain drug effects, Brain pathology, Brain Edema blood, Brain Edema etiology, Brain Edema pathology, Brain Injuries blood, Brain Injuries complications, Brain Injuries pathology, Cytokines analysis, Cytokines blood, Gene Expression Regulation drug effects, Hydrogen metabolism, Male, Mice, Inbred C57BL, Neuroprotective Agents metabolism, Antioxidants therapeutic use, Brain Edema drug therapy, Brain Injuries drug therapy, Drinking Water metabolism, Hydrogen therapeutic use, Neuroprotective Agents therapeutic use
- Abstract
Traumatic brain injury (TBI) in its various forms has emerged as a major problem for modern society. Acute TBI can transform into a chronic condition and be a risk factor for neurodegenerative diseases such as Alzheimer's and Parkinson's diseases, probably through induction of oxidative stress and neuroinflammation. Here, we examined the ability of the antioxidant molecular hydrogen given in drinking water (molecular hydrogen water; mHW) to alter the acute changes induced by controlled cortical impact (CCI), a commonly used experimental model of TBI. We found that mHW reversed CCI-induced edema by about half, completely blocked pathological tau expression, accentuated an early increase seen in several cytokines but attenuated that increase by day 7, reversed changes seen in the protein levels of aquaporin-4, HIF-1, MMP-2, and MMP-9, but not for amyloid beta peptide 1-40 or 1-42. Treatment with mHW also reversed the increase seen 4 h after CCI in gene expression related to oxidation/carbohydrate metabolism, cytokine release, leukocyte or cell migration, cytokine transport, ATP and nucleotide binding. Finally, we found that mHW preserved or increased ATP levels and propose a new mechanism for mHW, that of ATP production through the Jagendorf reaction. These results show that molecular hydrogen given in drinking water reverses many of the sequelae of CCI and suggests that it could be an easily administered, highly effective treatment for TBI.
- Published
- 2014
- Full Text
- View/download PDF
7. Crystallization and preliminary X-ray diffraction analysis of two peptides from Alzheimer PHF in complex with the MN423 antibody Fab fragment.
- Author
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Skrabana R, Cehlar O, Flachbartova Z, Kovac A, Sevcik J, and Novak M
- Subjects
- Animals, Antibodies, Monoclonal immunology, Crystallization, Crystallography, X-Ray, Epitopes chemistry, Epitopes immunology, Immunoglobulin Fab Fragments immunology, Mice, Peptide Fragments immunology, Protein Structure, Secondary, tau Proteins chemistry, Alzheimer Disease immunology, Antibodies, Monoclonal chemistry, Immunoglobulin Fab Fragments chemistry, Peptide Fragments chemistry
- Abstract
The major constituent of the Alzheimer's disease paired helical filaments (PHF) core is the intrinsically disordered protein (IDP) tau. Globular binding partners, e.g. monoclonal antibodies, can stabilize the fold of disordered tau in complexes. A previously published structure of a proteolytically generated tau fragment in a complex with the PHF-specific monoclonal antibody MN423 revealed a turn-like structure of the PHF core C-terminus [Sevcik et al. (2007). FEBS Lett. 581, 5872-5878]. To examine the structures of longer better-defined PHF segments, crystals of the MN423 Fab fragment were grown in the presence of two synthetic peptides derived from the PHF core C-terminus. For each, X-ray diffraction data were collected at 100 K at a synchrotron source and initial phases were obtained by molecular replacement.
- Published
- 2012
- Full Text
- View/download PDF
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