1. Proteomic profiling of formalin-fixed paraffine-embedded tissue reveals key proteins related to lung dysfunction in idiopathic pulmonary fibrosis
- Author
-
Anna Valeria Samarelli, Roberto Tonelli, Giulia Raineri, Giulia Bruzzi, Dario Andrisani, Filippo Gozzi, Alessandro Marchioni, Matteo Costantini, Luca Fabbiani, Filippo Genovese, Diego Pinetti, Linda Manicardi, Ivana Castaniere, Valentina Masciale, Beatrice Aramini, Luca Tabbì, Simone Rizzato, Stefania Bettelli, Samantha Manfredini, Massimo Dominici, Enrico Clini, and Stefania Cerri
- Subjects
pulmonary fibrosis ,mass spectrometry ,molecular profiling ,lung function decline ,rare disease ,IPF ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
IntroductionIdiopathic pulmonary fibrosis (IPF) severely affects the lung leading to aberrant deposition of extracellular matrix and parenchymal stiffness with progressive functional derangement. The limited availability of fresh tissues represents one of the major limitations to study the molecular profiling of IPF lung tissue. The primary aim of this study was to explore the proteomic profiling yield of archived formalin-fixed paraffin-embedded (FFPE) specimens of IPF lung tissues.MethodsWe further determined the protein expression according to respiratory functional decline at the time of biopsy. The total proteins isolated from 11 FFPE samples of IPF patients compared to 3 FFPE samples from a non-fibrotic lung defined as controls, were subjected to label-free quantitative proteomic analysis by liquid chromatography-mass spectrometry (LC-MS/MS) and resulted in the detection of about 400 proteins.ResultsAfter the pairwise comparison between controls and IPF, functional enrichment analysis identified differentially expressed proteins that were involved in extracellular matrix signaling pathways, focal adhesion and transforming growth factor β (TGF-β) signaling pathways strongly associated with IPF onset and progression. Five proteins were significantly over- expressed in the lung of IPF patients with either advanced disease stage (Stage II) or impaired pulmonary function (FVC
- Published
- 2024
- Full Text
- View/download PDF