258 results on '"Fikrettin Sahin"'
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2. A comparative study of glutathione-coated iron oxide and glutathione-coated core-shell magnetic nanoparticles for their antiviral activities
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Pinar Sen, Sevda Demir, Bekir Can Altındisogullari, and Fikrettin Sahin
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Iron oxide nanoparticles ,nanocomposites ,magnetic nanoparticles ,glutathione ,antiviral activity ,HSV-1 ,Biochemistry ,QD415-436 - Abstract
Iron oxide nanoparticles and its nanocomposites have attracted attention because of their potential applications in biomedicine. Here, firstly the Fe3O4 nanoparticles were prepared and then Ag was deposited by reducing the Ag salt onto the surface of the Fe3O4 nanoparticles. This way, bimetallic nanoparticles were obtained. The synthesized nanoparticles were characterized using ultraviolet-visible absorption spectroscopy, transmission electron microscopy and X-ray diffraction and the size and surface charge of the nanoparticles were determined by the dynamic light scattering (DLS) and zeta potential. The spectrographic data demonstrated the size of the glutathione-coated Fe3O4 nanoparticles to be 4.48 nm and glutathione-coated core-shell magnetic nanoparticles to be 7.98 nm with the spherical morphology and well monodispersed. This study was also designed to investigate the inhibitory effect of Ag@Fe3O4-GSH, Fe3O4-GSH and glutathione (GSH) against Human Herpes Simplex Virus Type 1 (HSV-1), Human Adenovirus Type 5, Human Poliovirus Type 1, and Bovine coronavirus. The significant inhibition of Ag@Fe3O4-GSH was observed against Poliovirus (4 Log), Adenovirus (3 Log), and HSV-1 (2 Log), respectively. GSH showed remarkable antiviral effect against Bovine coronavirus (3 Log) while it exhibited log reduction (1 Log) against HSV-1 and poliovirus. Fe3O4-GSH showed a reduction of 1 Log only for RNA viruses such as poliovirus and bovine coronavirus. These results demonstrate promising antiviral activity, highlighting the potential of these nanoparticles in combating viral infections.
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- 2024
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3. Detecting viable but non-culturable lactic acid bacteria following spray-drying and during storage
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Meriam Bouri, Sibel Simsek Yazici, and Fikrettin Sahin
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microencapsulation ,maltodextrin ,plate count agar ,probiotic bacteria ,tetrazolium salt ,trehalose ,Biochemistry ,QD415-436 - Abstract
Microencapsulation with various materials has been used as an efficient method to improve the viability of probiotic bacteria in multiple food products and the human gastrointestinal tract. Although plate count agar is the most commonly used method for evaluating the viability of encapsulated bacteria, it is still far from providing reliable information about the intermediate state between viable and dead bacteria. This study optimized a tetrazolium salt-based colorimetric method for the detection of viable but non-culturable state within encapsulated Lactobacillus rhamnosus and Lactobacillus plantarum probiotic strains. The viability of encapsulated bacteria was assessed after different spray-drying conditions and also during two months of storage at room temperature. The ability to reduce tetrazolium salts of two lactic acid bacteria was verified and calibrated according to the experimental conditions (strains, incubation time, and microencapsulation material). The loss of bacterial cultivability was species-specific and more problematic throughout the processing than during the storage period. An outlet temperature of 73-75 °C yielded a higher viable but non-culturable state level than at 68-69 °C, especially in maltodextrin and trehalose powders. Whey protein was statistically the best carrier in preserving viable and culturable encapsulated bacteria after spray-drying and during storage, as compared to sugar-based carriers. The tetrazolium-optimized method was more sensitive and accurate for the evaluation of viable bacteria in microcapsules as compared to the conventional plate count methods available. It showed the high variability of CFU counts on Man–Rogosa–Sharpe (MRS) agar. This colorimetric technique could be considered a real-time, simple, cost-effective, and reliable alternative to culture-based methods in evaluating probiotic microencapsulation efficiency.
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- 2024
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4. Plasma-derived exosomal miR-326, a prognostic biomarker and novel candidate for treatment of drug resistant pediatric acute lymphoblastic leukemia
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Neda Saffari, Soheila Rahgozar, Elaheh Faraji, and Fikrettin Sahin
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Medicine ,Science - Abstract
Abstract Acute lymphoblastic leukemia (ALL) is a cancer with high incidence rate in pediatrics and drug resistance is a major clinical concern for ALL treatment. The current study was designed to evaluate the role of exosomal miR-326 in diagnosis and treatment of children with B-ALL. Exosomes were isolated from plasma samples of 30 patients and B-ALL cell lines followed by characterization, using nanoparticle tracking analysis, immunoblotting assay and electron microscopy. qPCR showed significantly increased levels of miR-326 in patients exosomes compared with non-cancer controls (P
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- 2024
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5. The Potential Role of Boron in the Modulation of Gut Microbiota Composition: An In Vivo Pilot Study
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Nermin Basak Sentürk, Burcu Kasapoglu, Eray Sahin, Orhan Ozcan, Mehmet Ozansoy, Muzaffer Beyza Ozansoy, Pinar Siyah, Ugur Sezerman, and Fikrettin Sahin
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boron derivatives ,gut microbiota ,obesity ,cancer ,diabetes ,neurodegenerative diseases ,Medicine ,Pharmacy and materia medica ,RS1-441 - Abstract
Background/Objectives: The role of the gut microbiome in the development and progression of many diseases has received increased attention in recent years. Boron, a trace mineral found in dietary sources, has attracted interest due to its unique electron depletion and coordination characteristics in chemistry, as well as its potential role in modulating the gut microbiota. This study investigates the effects of inorganic boron derivatives on the gut microbiota of mice. Methods: For three weeks, boric acid (BA), sodium pentaborate pentahydrate (NaB), and sodium perborate tetrahydrate (SPT) were dissolved (200 mg/kg each) in drinking water and administered to wild-type BALB/c mice. The composition of the gut microbiota was analyzed to determine the impact of these treatments. Results: The administration of BA significantly altered the composition of the gut microbiota, resulting in a rise in advantageous species such as Barnesiella and Alistipes. Additionally, there was a decrease in some taxa associated with inflammation and illness, such as Clostridium XIVb and Bilophila. Notable increases in genera like Treponema and Catellicoccus were observed, suggesting the potential of boron compounds to enrich microbial communities with unique metabolic functions. Conclusions: These findings indicate that boron compounds may have the potential to influence gut microbiota composition positively, offering potential prebiotic effects. Further research with additional analyses is necessary to fully understand the interaction between boron and microbiota and to explore the possibility of their use as prebiotic agents in clinical settings.
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- 2024
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6. Synergistic anti-cancer effect of sodium pentaborate pentahydrate, curcumin and piperine on hepatocellular carcinoma cells
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Zehra Omeroglu Ulu, Nurdan Sena Degirmenci, Zeynep Busra Bolat, and Fikrettin Sahin
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Medicine ,Science - Abstract
Abstract Hepatocellular carcinoma (HCC) is a leading cause of cancer-related death in the world. Poor prognosis of HCC patients is a major issue, thus, better treatment options for patients are required. Curcumin (Cur), hydrophobic polyphenol of the plant turmeric, shows anti-proliferative, apoptotic, and anti-oxidative properties. Boron is a trace element which is essential part of human nutrition. Sodium pentaborate pentahydrate (NaB), a boron derivative, is an effective agent against cancer. In the current study, we performed in vitro experiments and transcriptome analysis to determine the response of NaB, Cur, piperine (Pip) and their combination in two different HCC cell lines, HepG2 and Hep3B. NaB and Cur induced cytotoxicity in a dose and time dependent manner in HepG2 and Hep3B, whereas Pip showed no significant toxic effect. Synergistic effect of combined treatment with NaB, Cur and Pip on HCC cells was observed on cytotoxicity, apoptosis and cell cycle assay. Following in vitro studies, we performed RNA-seq transcriptome analysis on NaB, Cur and Pip and their combination on HepG2 and Hep3B cells. Transcriptome analysis reveals combined treatment of NaB, Cur and Pip induces anti-cancer activity in both of HCC cells.
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- 2023
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7. Dual- or single rinse? The tubular sealer penetration of endodontic chelating agents.
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Beliz Ozel, Tuba Ayhan, Figen Kaptan, Fikrettin Sahin, and Meriç Karapınar-Kazandağ
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Medicine ,Science - Abstract
IntroductionIn this study, we aimed to compare the effectiveness of various chelating agents, ethilenediaminetetraacetic acid (EDTA), citric acid (CA), and etidronic acid (HEDP) mixed in two different forms, in removing the smear layer and promoting the penetration of an endodontic sealer into the dentinal tubules of extracted single-rooted teeth.MethodsThe study used 75 teeth divided into five groups: 17% EDTA, 10% CA, 9% HEDP + NaOCl, 9% HEDP + distilled water (DW), and a control (DW) group. Scanning electron microscopy was used to assess smear layer removal and confocal laser microscopy was used to evaluate tubular sealer penetration at different depths from the apical tip.ResultsSealer penetration was highest with 17% EDTA and 10% CA as compared with the other agents (pConclusionWithin the limitations of this study, highest values were seen in EDTA and CA in terms of sealer penetration and smear layer removal. In the light of these findings, the use of strong chelating agents highlights better clinical efficiency than dual-rinse or single HEDP irrigation.
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- 2024
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8. Gamma-irradiated SARS-CoV-2 vaccine candidate, OZG-38.61.3, confers protection from SARS-CoV-2 challenge in human ACEII-transgenic mice
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Raife Dilek Turan, Cihan Tastan, Derya Dilek Kancagi, Bulut Yurtsever, Gozde Sir Karakus, Samed Ozer, Selen Abanuz, Didem Cakirsoy, Gamze Tumentemur, Sevda Demir, Utku Seyis, Recai Kuzay, Muhammer Elek, Miyase Ezgi Kocaoglu, Gurcan Ertop, Serap Arbak, Merve Acikel Elmas, Cansu Hemsinlioglu, Ozden Hatirnaz Ng, Sezer Akyoney, Ilayda Sahin, Cavit Kerem Kayhan, Fatma Tokat, Gurler Akpinar, Murat Kasap, Ayse Sesin Kocagoz, Ugur Ozbek, Dilek Telci, Fikrettin Sahin, Koray Yalcin, Siret Ratip, Umit Ince, and Ercument Ovali
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Medicine ,Science - Abstract
Abstract The SARS-CoV-2 virus caused the most severe pandemic around the world, and vaccine development for urgent use became a crucial issue. Inactivated virus formulated vaccines such as Hepatitis A and smallpox proved to be reliable approaches for immunization for prolonged periods. In this study, a gamma-irradiated inactivated virus vaccine does not require an extra purification process, unlike the chemically inactivated vaccines. Hence, the novelty of our vaccine candidate (OZG-38.61.3) is that it is a non-adjuvant added, gamma-irradiated, and intradermally applied inactive viral vaccine. Efficiency and safety dose (either 1013 or 1014 viral RNA copy per dose) of OZG-38.61.3 was initially determined in BALB/c mice. This was followed by testing the immunogenicity and protective efficacy of the vaccine. Human ACE2-encoding transgenic mice were immunized and then infected with the SARS-CoV-2 virus for the challenge test. This study shows that vaccinated mice have lowered SARS-CoV-2 viral RNA copy numbers both in oropharyngeal specimens and in the histological analysis of the lung tissues along with humoral and cellular immune responses, including the neutralizing antibodies similar to those shown in BALB/c mice without substantial toxicity. Subsequently, plans are being made for the commencement of Phase 1 clinical trial of the OZG-38.61.3 vaccine for the COVID-19 pandemic.
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- 2021
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9. Preclinical efficacy and safety analysis of gamma-irradiated inactivated SARS-CoV-2 vaccine candidates
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Gozde Sir Karakus, Cihan Tastan, Derya Dilek Kancagi, Bulut Yurtsever, Gamze Tumentemur, Sevda Demir, Raife Dilek Turan, Selen Abanuz, Didem Cakirsoy, Utku Seyis, Samed Ozer, Omer Elibol, Muhammer Elek, Gurcan Ertop, Serap Arbak, Merve Acikel Elmas, Cansu Hemsinlioglu, Ayse Sesin Kocagoz, Ozden Hatirnaz Ng, Sezer Akyoney, Ilayda Sahin, Ugur Ozbek, Dilek Telci, Fikrettin Sahin, Koray Yalcin, Siret Ratip, and Ercument Ovali
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Medicine ,Science - Abstract
Abstract COVID-19 outbreak caused by SARS-CoV-2 created an unprecedented health crisis since there is no vaccine for this novel virus. Therefore, SARS-CoV-2 vaccines have become crucial for reducing morbidity and mortality. In this study, in vitro and in vivo safety and efficacy analyzes of lyophilized vaccine candidates inactivated by gamma-irradiation were performed. The candidate vaccines in this study were OZG-3861 version 1 (V1), an inactivated SARS-CoV-2 virus vaccine, and SK-01 version 1 (V1), a GM-CSF adjuvant added vaccine. The candidate vaccines were applied intradermally to BALB/c mice to assess toxicity and immunogenicity. Preliminary results in vaccinated mice are reported in this study. Especially, the vaccine models containing GM-CSF caused significant antibody production with neutralization capacity in absence of the antibody-dependent enhancement feature, when considered in terms of T and B cell responses. Another important finding was that the presence of adjuvant was more important in T cell in comparison with B cell response. Vaccinated mice showed T cell response upon restimulation with whole inactivated SARS-CoV-2 or peptide pool. This study shows that the vaccines are effective and leads us to start the challenge test to investigate the gamma-irradiated inactivated vaccine candidates for infective SARS-CoV-2 virus in humanized ACE2 + mice.
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- 2021
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10. Antileishmanial Activity of BNIPDaoct- and BNIPDanon-loaded Emulsomes on Leishmania infantum Parasites
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Zeynep Islek, Mehmet Hikmet Ucisik, Elif Keskin, Bilgesu Onur Sucu, Ana G. Gomes‐Alves, Ana M. Tomás, Mustafa Guzel, and Fikrettin Sahin
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bisnapthalimidopropyl (BNIP) derivatives ,Leishmania infantum ,nanocarrier ,emulsome ,antileishmanial therapy ,infected macrophages ,Chemical technology ,TP1-1185 - Abstract
Among bisnaphthalimidopropyl (BNIP) derivatives, BNIPDaoct and BNIPDanon recently came forward with antileishmanial activities beyond the standard, commercialized antileishmanial therapies. However, high-level toxicity on macrophages plus poor aqueous solubility and poor bioavailability of the compounds limit their application in therapies. Addressing these limitations, the present study introduces BNIPDaoct- and BNIPDanon-loaded emulsomes as lipid-based nanocarrier systems. Accordingly, emulsome formulations were prepared with the presence of BNIP compounds. The average diameters of BNIPDaoct- and BNIPDanon-loaded emulsomes were found as 363.1 and 337.4 nm, respectively; while empty emulsomes differed with a smaller average particle diameter, i.e., 239.1 nm. All formulations exhibited a negative zeta potential value. The formulations achieved the encapsulation of BNIPDaoct and BNIPDanon at approximately 0.31 mg/ml (501 µM) and 0.24 mg/ml (387 µM), respectively. The delivery of BNIP within the emulsomes improved the antileishmanial activity of the compounds. BNIPDaoct-loaded emulsome with 50% inhibitory concentration (IC50) value of 0.59 ± 0.08 µM was in particular effective against Leishmania infantum promastigotes compared to free BNIPDaoct (0.84 ± 0.09 µM), free BNIPDanon (1.85 ± 0.01 µM), and BNIPDanon-loaded emulsome (1.73 ± 0.02 µM). Indicated by at least ≥ 2-fold higher 50% cytotoxic concentration (CC50) values, the incorporation of BNIP into emulsomes significantly reduced the toxicity of BNIPs against macrophages, corresponding to up to 16-fold improvement in selectivity index (CC50/IC50) for L. infantum promastigotes. The infection rates of macrophages were determined using dual-fluorescent flow cytometry as 68.6%. Both BNIP formulations at concentration of 1.87 µM reduced the parasitic load nearly to 40%, whereas BNIPDaoct-loaded emulosmes could further decrease the parasitic load below 20% at 7.5 µM and above. In conclusion, the incorporation of BNIPDaoct and BNIPDanon into emulsomes results in water-soluble dispersed emulsome formulations that do not only successfully facilitate the delivery of BNIP compounds into the parasites and the Leishmania-infected macrophages in vitro but also enhance antileishmanial efficacy as proven by the decline in IC50 values. The selectivity of the formulation for L. infantum parasites further contributes to the challenging safety profile of the compounds. The promising in vitro antileishmanial efficacy of BNIP-loaded emulsomes highlights the potential of the system for the future in vivo studies.
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- 2022
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11. Curcumin- and Piperine-Loaded Emulsomes as Combinational Treatment Approach Enhance the Anticancer Activity of Curcumin on HCT116 Colorectal Cancer Model
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Zeynep Busra Bolat, Zeynep Islek, Bilun Nas Demir, Elif Nur Yilmaz, Fikrettin Sahin, and Mehmet Hikmet Ucisik
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curcumin ,piperine ,emulsome ,colorectal cancer ,combination chemotherapy ,Biotechnology ,TP248.13-248.65 - Abstract
Combination chemotherapy, administrating two chemotherapeutic agents concurrently, comes into prominence, as the heterogeneity or the level of the disease necessitates a collaborative action. Curcumin, isolated from turmeric, and piperine, isolated from black long pepper, are two dietary polyphenols studied for their intrinsic anti-cancer properties against various cancer types including colorectal cancer (CRC). Furthermore, piperine improves the therapeutic effect of curcumin. Addressing this mutual behavior, this study combines curcumin and piperine within emulsome nanoformulations. Curcumin- (CurcuEmulsomes) and piperine-loaded emulsomes (PiperineEmulsomes) have established a uniform, stable, spherical dispersion with average diameters of 184.21 and 248.76 nm, respectively. The solid tripalmitin inner core achieved encapsulation capacities of up to 0.10 mg/ml curcumin and 0.09 mg/ml piperine content. While piperine treatment alone – in its both free and emulsome forms – showed no inhibition in the proliferation of HCT116 cells in vitro, its presence as the second drug agent enhanced curcumin’s effect. Combination of 7 μM PiperineEmulsome and 25 μM CurcuEmulsome concentrations was found to be most effective with an inhibition of cell proliferation of about 50% viability. Cell cycle arrest at G2/M phase and induced apoptosis verified the improved anti-cancer characteristics of the therapy. While CurcuEmulsomes achieved a fourfold increase in Caspase 3 level, combination of treatment with PiperineEulsomes achieved a sixfold increase in the level of this apoptotic marker. Combinational treatment of HCT116 cells with CurcuEmulsomes and PiperineEmulsomes improved the anticancer activity of the compounds and highlighted the potential of the approach for further in vivo studies.
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- 2020
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12. Effects of Glycerol and Sodium Pentaborate Formulation on Prevention of Postoperative Peritoneal Adhesion Formation
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Erhan Aysan, Fikrettin Sahin, Ruzgar Catal, Mirkhaliq Javadov, and Alev Cumbul
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Gynecology and obstetrics ,RG1-991 - Abstract
Background. Postoperative peritoneal adhesions (PPA) are a serious problem for abdominal surgery. An effective remedy has not been found yet. New formulation of glycerol and sodium pentaborate may be able to solve the problem. Method. Female Wistar albino rats were randomly assigned into four equal groups. The adhesion model was created on the caecum anterior wall and covered with 2 ml 0.9% NaCl, 3% glycerol, 3% sodium pentaborate, and 3% glycerol plus 3% sodium pentaborate solutions in the groups, respectively. Two weeks later, the rats were sacrificed. PPA were graded macroscopically and microscopically. Results. Total adhesion scores of the 3% glycerol + 3% sodium pentaborate group were statistically different from the other groups for macroscopic and also microscopic evaluations (p
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- 2020
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13. Human tooth germ stem cell response to calcium-silicate based endodontic cements
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Esra Pamukcu Guven, Mehmet Emir Yalvac, Mehmet Baybora Kayahan, Hakk Sunay, Fikrettin SahIn, and Gunduz Bayirli
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Stem cells ,Cytotoxicity ,Scanning electron microscopy ,Calcium silicate ,Endodontics ,Dentistry ,RK1-715 - Abstract
OBJECTIVE: The aim of this study was to compare the cytotoxic effects of endodontic cements on human tooth germ stem cells (hTGSCs). MTA Fillapex, a mineral trioxide aggregate (MTA)-based, salicylate resin containing root canal sealer, was compared with iRoot SP, a bioceramic sealer, and AH Plus Jet, an epoxy resin-based root canal sealer. MATERIAL AND METHODS: To evaluate cytotoxicity, all materials were packed into Teflon rings (4 mmµ3 mm) and co-cultured with hTGSCs with the aid of 24-well Transwell permeable supports, which had a pore size of 0.4 µm. Coverslips were coated with MTA Fillapex, iRoot SP and AH Plus Jet and each coverslip was placed onto the bottom of one well of a six-well plate for scanning electron microscopy (SEM) analysis. Before the cytotoxicity and SEM analysis, all samples were stored at 37ºC and at 95% humidity and 5% CO2 for 24 hours to set. The cellular viability was analyzed using MTS test (3-(4,5-dimethyl-thiazol-2-yl)-5-(3-carboxy-methoxy-phenyl)-2-(4-sulfo-phenyl)-2H-tetrazolium). The cytotoxic effects and SEM visualization of the tested materials were analyzed at 24-hour, 72-hour, one-week and two-week periods. RESULTS: On the 1st day, only MTA Fillapex caused cytotoxicity compared to negative control (NC) group (p0.05). After 14 days of incubation with the test materials, MTA Fillapex exhibited significantly higher cytotoxicity compared with iRoot SP, AH Plus Jet and the NC group (P
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- 2013
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14. IDENTIFICATION OF BEAN GENOTYPES FROM TURKEY RESISTANCE TO COMMON BACTERIAL BLIGHT AND HALO BLIGHT DISEASES
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Mesude Figen Donmez, Fikrettin Sahin, and Erdal Elkoca
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Phaseolus vulgaris ,Pseudomonas savastanoi pv. phaseolicola (Burkholder) Garden et al. ,Xanthomonas axonopodis pv. Phaseoli (Smith) Vauterin et al. ,Biochemistry ,QD415-436 ,Plant culture ,SB1-1110 ,Science - Abstract
Bean diseases caused by different pathogens reduce important yield and quality of beans in different bean growing regions in both Turkey and the other bean producing countries. In the present study, bacterial pathogens in the species of Pseudomonas savastanoi pv. phaseolicola (Burkholder) Garden et al. and Xanthomonas axonopodis pv. Phaseoli (Smith) Vauterin et al. causing economically important disease on bean plants growing in the commercial fields of Erzurum and Erzincan provinces located in the Eastern Anatolia region of Turkey has been isolated and identified. Totally thirty-six bean genotypes and two commercial cultivars commonly grown in the region have been screened for resistance to these pathogens both in greenhouse and field condition during 2001–2002. Disease severity in the field condition reduced seed quality and quantity of bean. Among the thirty-eight genotypes tested, only 36K was found to be resistant to both of the pathogens.
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- 2013
15. Mechanism of Body Weight Reducing Effect of Oral Boric Acid Intake
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Erhan Aysan, Fikrettin Sahin, Dilek Telci, Merve Erdem, Mahmut Muslumanoglu, Erkan Yardımcı, and Huseyin Bektasoglu
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Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
Objective. The effect of oral boric acid intake on reducing body weight has been previously demonstrated although the mechanism has been unclear. This research study reveals the mechanism. Subjects. Twelve mice were used, in groups of six each in the control and study groups. For five days, control group mice drank standard tap water while during the same time period the study group mice drank tap water which contains 0.28 mg/250 mL boric acid. After a 5-day period, gene expression levels for uncoupling proteins (UCPs) in the white adipose tissue (WAT), brown adipose tissue (BAT), and skeletal muscle tissue (SMT) and total body weight changes were analyzed. Results. Real time PCR analysis revealed no significant change in UCP3 expressions, but UCP2 in WAT (: 0.0317), BAT (: 0.014), and SMT (: 0.0159) and UCP1 in BAT (: 0.026) were overexpressed in the boric acid group. In addition, mice in the boric acid group lost body weight (mean 28.1%) while mice in the control group experienced no weight loss but a slight weight gain (mean 0.09%, ). Conclusion. Oral boric acid intake causes overexpression of thermogenic proteins in the adipose and skeletal muscle tissues. Increasing thermogenesis through UCP protein pathway results in the accelerated lipolysis and body weight loss.
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- 2013
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16. Metal-Enhanced Fluorescent Carbon Quantum Dots via One-Pot Solid State Synthesis for Cell Imaging
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Volkan Can, Bugra Onat, Elif Sümeyye Cirit, Fikrettin Sahin, and Zeliha Cansu Canbek Ozdil
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Biomaterials ,Biochemistry (medical) ,Biomedical Engineering ,General Chemistry - Published
- 2023
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17. Delivery of curcumin within emulsome nanoparticles enhances the anti-cancer activity in androgen-dependent prostate cancer cell
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Zeynep Busra Bolat, Zeynep Islek, Fikrettin Sahin, and Mehmet Hikmet Ucisik
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Androgen Dependent Prostate Cancer ,Curcumin ,Emulsome ,Genetics ,Anti-Cancer ,General Medicine ,Phytochemical ,Molecular Biology - Abstract
Background: Curcumin, a dietary polyphenol isolated from turmeric, is a potent phytochemical possessing intrinsic anticancer activities against various cancer types including prostate cancer. However, low water solubility and bioavailability of the compound are major challenges against its medical use. The objective of this study is to evaluate the therapeutic potential of curcumin-loaded emulsome nanoparticular system, i.e. CurcuEmulsomes, for the treatment of androgen dependent LNCaP prostate cancer cell line. Methods and results: The antiproliferative effect of both free curcumin and CurcuEmulsome were investigated comparatively on LNCaP and PNT1A cells. Cell viability data indicates that the inhibition in proliferation of LNCaP cells becomes more effective when curcumin is provided with its emulsome formulation rather than its free form. Corresponding to a therapeutic index of 2.25, Half maximal inhibitory (IC50) and cytotoxic (CC50) concentrations of CurcuEmulsomes for LNCaP and PNT1A cells were estimated as 17.1 µM and 38.6 µM, respectively. The fluorescence signal of autofluorescence curcumin was preserved within the CurcuEmulsomes at 72 h after the treatment. Thus, CurcuEmulsomes prolonged biological activity of curcumin. Induced apoptotic cell death and stimulated cell cycle arrest at G2/M phase were attributed to antiproliferative activity of CurcuEmulsomes. Treatment of LNCaP cells with CurcuEmulsomes increased expression of caspase-3 significantly by 11.76-fold, whereas decreased cyclin D1, Bcl-2 and AR expression levels significantly by of 0.18, 0.06 and 0.46-fold, respectively. Conclusions: Presented safety and anticancer activity of CurcuEmulsomes on LNCaP cell line highlights the potential of CurcuEmulsomes to benefit intrinsic anticancer activities of curcumin in androgen dependent prostate cancer therapy. Department of Genetics and Bioengineering, Yeditepe University, Istanbul, Turkey
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- 2023
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18. Antimicrobial Properties of Free and Encapsulated-essential Oil into Chitosan of Rosemary
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Parisa BOLOURI, Pınar SEN, and Fikrettin SAHIN
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Pathogenic microbes are the most common cause of chronic infections and mortality in mammals and loss of agricultural crops in the world. Antimicrobial agents including antibiotics and antifungals are often used in the treatment of infections due to their exceptional consequences faces various problems that limits the treatment by them. Therefore, herbal sources are attracting more attention due to lower side effects and in some cases better and faster effects. Plant essential oils (EOs) have many antimicrobial and pharmacological effects, but EOs are volatile, heat-sensitive and water-insoluble compounds that limit their use, encapsulating EOs can improve the properties of such compounds. Chitosan, a biodegradable nanopolymer, is very important in drug transfer due to better encapsulation, controlled release and low toxicity. Therefore, this research was conducted to investigate the encapsulation technique as a suitable method to preserve essential oils and increase their antimicrobial properties. First, the chitosan polymer was synthesized and used to encapsulate rosemary essential oil after examining its shape and size by spectroscopy (FTIR) and scanning electron microscopy (SEM). Then, the antibacterial effect of encapsulated EO and free EO was investigated by liquid microdilution method. The results showed that encapsulated EO had a greater antibacterial effect against gram-negative bacteria and fungi compared to free EO.
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- 2023
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19. Plasma-derived exosomal miR-326, a prognostic biomarker and candidate for treatment of drug resistant pediatric acute lymphoblastic leukemia
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Neda Saffari, Soheila Rahgozar, and Fikrettin Sahin
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Background Acute lymphoblastic leukemia (ALL) is a cancer with high incidence rate in pediatrics and drug resistance is a major clinical concern for ALL treatment. The current study was designed to evaluate the role of exosomal miR-326 in diagnosis and treatment of children with B-ALL.Methods Exosomes were isolated from plasma samples of 30 patients and B-ALL cell lines through 2 different methods. Exosomes were then characterization, using nanoparticle tracking analysis, immunoblotting assay and electron microscopy. qRT-PCR was employed to measure the expression levels of miR-326. Exosome uptake was validated using transfection procedure. MTT assays were performed to investigate cells viability.Results qPCR showed significant increased levels of miR-326 in patients exosomes compared with non-cancer controls (P P Conclusions The novel introduced features of the exosomal miR-326 addresses a non-invasive, unique way of diagnosing primary drug resistance in pediatric ALL and establishes a novel therapeutic strategy for this cancer.
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- 2023
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20. Boron Derivatives Inhibit the Proliferation of Breast Cancer Cells and Affect Tumor-Specific T Cell Activity In Vitro by Distinct Mechanisms
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Eslam Essam Mohammed, Nezaket Türkel, Ummuhan Miray Yigit, Altay Burak Dalan, and Fikrettin Sahin
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Inorganic Chemistry ,Endocrinology, Diabetes and Metabolism ,Biochemistry (medical) ,Clinical Biochemistry ,General Medicine ,Biochemistry - Published
- 2023
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21. The Effect of Boric Acid and Sodium Pentaborate Pentahydrate-Treated Foreskin Derived Mesenchymal Stem Cells on Liver Fibrosis
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Guluna Erdem Koc, Alpaslan Gokcimen, and Fikrettin Sahin
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Inorganic Chemistry ,Endocrinology, Diabetes and Metabolism ,Biochemistry (medical) ,Clinical Biochemistry ,General Medicine ,Biochemistry - Published
- 2023
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22. Investigating the Effects of Chordoma Cell-Derived Exosomes on the Tumorigenicity of Nucleus Pulposus Cells
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Esra Aydemir, Nur Zübeyda Yılmaz, Ömer Faruk Bayrak, and Fikrettin Sahin
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Neurology (clinical) - Abstract
Objective Interaction of tumor cells with the surrounding environment is essential for tumor growth and progression that eventually leads to metastasis. Growing evidence shows that extracellular vesicles also known as exosomes play a crucial role in signaling between the tumor and its microenvironment. Tumor-derived exosomes have generally protumorigenic effects such as metastasis, hypoxia, angiogenesis, and epithelial-mesenchymal transition. Methods In this study, exosomes were isolated from a chordoma cell line, MUG-Chor1, and characterized subsequently. The number of exosomes was determined and introduced into the healthy nucleus pulposus (NP) cells for 140 days. The protumorigenic effects of a chordoma cell line-derived exosomes that initiate the tumorigenesis on NP cells were investigated. The impact of tumor-derived exosomes on various cellular events including cell cycle, migration, proliferation, apoptosis, and viability has been studied by treating NP cells with chordoma cell-line-derived exosomes cells. Results Upon treatment with exosomes, the NP cells not only gained a chordoma-like morphology but also molecular characteristics such as alterations in the levels of certain gene expressions. The migratory and angiogenic capabilities of NP cells increased after treatment with chordoma-derived exosomes. Conclusion Based on our findings, we can conclude that exosomes carry information from tumor cells and may exert tumorigenic effects on nontumorous cells.
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- 2023
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23. The Role of Extracellular Vesicles in Immunomodulation and Pathogenesis ofLeishmaniaand Other Protozoan Infections
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Zeynep, Islek, Turhan, Bozkurt, Batuhan, Hikmet, Ucisik, Mehmet, and Fikrettin, Sahin
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parasitic diseases - Abstract
Extracellular vesicles (EVs) have lately emerged as crucial mediators in parasite infections. Recent research suggests that protozoan parasites, including Leishmania, employ EVs as transport vehicles to deliver biologically active effector molecules such as parasitic virulence factors to modulate the host immune system and their microenvironment. The immunomodulatory effects of EVs play an essential role in the formation and progression of parasitic diseases. The immunomodulatory strategies applied by EVs of protozoan origin have similarities to the development and progression of other infections or diseases such as cancer. In this chapter, we will provide recent insights into the role of EVs in host-pathogen interactions, intercellular-communication, immunomodulation and pathogenesis of Leishmania and other protozoan parasites, including Plasmodium spp., Toxoplasma spp. and Trypanosoma spp. In addition, biologically inspired by the immunomodulation strategies of protozoan parasites, new immunotherapeutic models are being currently investigated to implement EVs more intensively in both therapy and diagnostics. Therefore, besides highlighting the role of EVs in protozoan infections, this chapter sheds light briefly on new immunotherapeutic approaches utilizing the strategies of protozoan EVs in medicine.
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- 2022
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24. Inhibition of Migration, Invasion and Drug Resistance of Pancreatic Adenocarcinoma Cells – Role of Snail, Slug and Twist and Small Molecule Inhibitors [Corrigendum]
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Ezgi Kaşıkcı, Esra Aydemir, Omer Faruk Bayrak, and Fikrettin Sahin
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Oncology ,Pharmacology (medical) ,OncoTargets and Therapy - Abstract
KaÅıkcı E, Aydemir E, Bayrak ÖF, Åahin F. Onco Targets Ther. 2020;13:5763–5777. The authors have advised that errors were made during the selection of images used for Figure 3 and Figure 8 on pages 5769 and 5774, respectively. The corrected Figure 3 and 8 are shown in Download Article. The authors wish to explain that the new images were collected from another experimental repeat which occurred on a different day to those shown in the original publication. This does not change the results or calculations as the images are only representative of the groups described. Cells were counted from all the experimental and technical repeats and the statistical analysis was performed using cell numbers from the entire slide. Counting and imaging was not done at the same time. The authors wish to apologize for the error. Read the original article
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- 2022
25. Induced Pluripotent Stem Cell‐Derived Parathyroid Organoids Resemble Parathyroid Morphology and Function
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Selinay Şenkal‐Turhan, Ezgi Bulut‐Okumuş, Muhterem Aydın, Neşe Başak Türkmen, Aslı Taşlıdere, Fikrettin Şahin, Şahin Yılmaz, Pınar Akkuş Süt, and Ayşegül Doğan
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3D culture ,hypoparathyroidism ,organoid ,parathyroid ,parathyroid organoid ,pluripotent stem cell ,Science - Abstract
Abstract The primary role of the parathyroid glands is to maintain calcium homeostasis through the secretion of parathyroid hormone (PTH). The limited proliferative capacity and differentiation of parathyroid cells hinder the generation of cell therapy options. In this study, parathyroid organoids are successfully generated from human‐induced pluripotent stem cells (hiPSCs). At the end of the 20 days of differentiation, the parathyroid organoids exhibited distinct parathyroid morphology. Stereomicroscope, scanning electron microscopy (SEM), and transmission electron microscopy (TEM) analysis demonstrated the 3D arrangement of the cell layers in which intracellular structures of parathyroid cells resemble human parathyroid cellular morphology. Comprehensive molecular analyses, including RNA sequencing (RNA‐Seq) and liquid chromatography/mass spectrometry (LC‐MS/MS), confirmed the expression of key parathyroid‐related markers. Protein expression of CasR, CxCr4, Gcm2, and PTH are observed in parathyroid organoids. Parathyroid organoids secrete PTH, demonstrate active intercellular calcium signaling, and induce osteogenic differentiation via their secretome. The tissue integration potential of parathyroid organoids is determined by transplantation into parathyroidectomized rats. The organoid transplanted animals showed significant elevations in PTH‐related markers (CasR, CxCr4, Foxn1, Gcm2, and PTH). PTH secretion is detected in organoid‐transplanted animals. The findings represent a significant advancement in parathyroid organoid culture and may offer a cellular therapy for treating PTH‐related diseases, including hypoparathyroidism.
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- 2024
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26. Boron concentrations in tap water in many cities of Turkey
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Refiye Yanardag, Sahin Yilmaz, Fikrettin Sahin, Ruya Kuru, Ozlem Sacan, and Aysen Yarat
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inorganic chemicals ,021110 strategic, defence & security studies ,Health, Toxicology and Mutagenesis ,Pharmacology toxicology ,0211 other engineering and technologies ,chemistry.chemical_element ,02 engineering and technology ,010501 environmental sciences ,Mass spectrometry ,01 natural sciences ,Pollution ,chemistry ,Tap water ,Environmental chemistry ,Environmental Chemistry ,Environmental science ,Boron ,Inductively coupled plasma mass spectrometry ,0105 earth and related environmental sciences - Abstract
Boron concentrations in 335 tap water samples collected from 75 cities in Turkey have been determined by inductively coupled plasma-mass spectrometry. Boron levels ranged between 0.001 and 5.5 mg/L...
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- 2020
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27. The level of two trace elements in carious, non-carious, primary, and permanent teeth
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Sahin Yilmaz, Pakize Neslihan Taşlı, Gülşah Balan, Serap Akyüz, Fikrettin Sahin, Ruya Kuru, Aysen Yarat, Kuru, Ruya, Balan, Gulsah, Yilmaz, Sahin, Tasli, Pakize Neslihan, Akyuz, Serap, Yarat, Aysen, and Sahin, Fikrettin
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inorganic chemicals ,Boron,Fluoride,Teeth,Trace elements,Dental health ,Dentistry ,chemistry.chemical_element ,trace elements ,ZINC ,chemistry.chemical_compound ,Diş Hekimliği ,stomatognathic system ,Carious teeth ,Health Care Sciences and Services ,dental health ,Sağlık Bilimleri ve Hizmetleri ,Boron ,Permanent teeth ,teeth ,Permanent tooth ,fluoride ,DENTIN ,business.industry ,Chemistry ,Dental health ,Articles ,Biological Sciences ,lcsh:RK1-715 ,stomatognathic diseases ,lcsh:Dentistry ,Dental ,SEX ,Negative correlation ,business ,boron ,Fluoride - Abstract
Purpose: The boron and fluoride mainly accumulate in the bones and teeth of the human body. The purpose of this study is to determine boron or fluoride levels in the whole tooth, to evaluate the correlation between their levels and to compare these levels in primary/permanent, carious, and non-carious groups. Materials and Methods: The boron and fluoride levels of thirty-six teeth, separated such as primary carious (n=9) and non-carious (n=9), permanent carious (n=9) and non-carious (n=9), were determined by ICP-MS and ion-selective electrode, respectively. Results: While boron levels were between 0.001 and 5.88 ppm, the fluoride levels were between 21.24 and 449.22 ppm. The boron level of non-carious teeth was higher than those of carious teeth in primary and permanent tooth groups. However, this difference was not statistically significant (p>0.05). The fluoride level of non-carious teeth was higher than those of carious teeth in primary (p=0.062) and permanent teeth groups (p=0.046). Negative correlation, found between boron and fluoride in all groups, was significant only in non-carious teeth group (r=-0.488, p=0.040). Conclusion: The results of our study proved the importance of fluoride as a protective factor for dental caries once more. The boron levels in non-carious teeth were also higher than carious teeth. However, it was not significant. Moreover, there was negative correlation between teeth boron and fluoride levels. Therefore, it is necessary to conduct more detailed studies on the tooth boron level and its relation with caries formation and with fluoride levels.
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- 2020
28. Prostate cancer cell-specific BikDDA delivery by targeted polymersomes
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Dilek Telci, Fikrettin Sahin, Zeynep Busra Bolat, Asuman Bozkir, Lijuan Guan, Umut Can Oz, Giuseppe Battaglia, and Alessandro Poma
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Materials Science (miscellaneous) ,Peptide ,02 engineering and technology ,Gene delivery ,010402 general chemistry ,01 natural sciences ,Prostate cancer ,Prostate ,LNCaP ,medicine ,Electrical and Electronic Engineering ,Physical and Theoretical Chemistry ,chemistry.chemical_classification ,Cell Biology ,Transfection ,021001 nanoscience & nanotechnology ,medicine.disease ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,medicine.anatomical_structure ,chemistry ,Polymersome ,Cancer research ,0210 nano-technology ,Linker ,Biotechnology - Abstract
In this paper, we report the polymersome-mediated intracellular delivery of pro-apoptotic BikDDA gene using two different peptide–copolymer covalent conjugation strategies specific for prostate cancer targeting. The BikDDA gene was used as a therapeutic agent on prostate cancer cells. The transfection efficiency of BikDDA-loaded poly[oligo(ethyleneglycol) methacrylate]-co-poly[2-(diisopropylamino) ethyl methacrylate] (P(OEG10MA)20-PDPA100) polymersomes revealed that they could serve as a suitable non-viral gene transfection tool. The targeted delivery of BikDDA into prostate cancer cells (LNCaP) using polymersomes was successfully carried out by conjugating the PSMA-targeting moiety (peptide 563) to P(OEG10MA)20-PDPA100 copolymer using either succinimidyl 4-(N-maleimidomethyl)cyclohexane-1-carboxylate (SMCC) as a bifunctional linker between the thiol-bearing targeting peptide and amino-bearing P(OEG10MA)20-PDPA100 copolymer or attaching a maleimide-modified targeting peptide onto a thiol-terminated P(OEG10MA)20-PDPA100 copolymer. The pH-responsive and biocompatible polymersomes, conjugated with peptide 563, exhibited an enhanced cellular uptake by LNCaP cells in comparison to the healthy prostate epithelial cell line PNT1A, thus indicating the cell-specific delivery. The increased Bik mRNA expression and cell death in these LNCaP cells indicates high effectiveness of the targeting polymersomes. According to these results, we believe more efficient gene delivery systems via specifically targeted pH-sensitive polymersomes can be a promising approach and promote the development of novel therapies against prostate cancer.
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- 2020
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29. An Alternative Biotechnological Tool for Magnesite Enrichment: Lactic Acid Bacteria Isolated from Soil
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Derya Efe, Fikrettin Sahin, Medine Gulluce, Furkan Orhan, Efe, D., Orhan, F., Gulluce, M., Şahin, Fikrettin, Yeditepe Üniversitesi, and Belirlenecek
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0301 basic medicine ,Identification ,030106 microbiology ,Precipitation ,010501 environmental sciences ,engineering.material ,01 natural sciences ,Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Vaterite ,organic acids ,Earth and Planetary Sciences (miscellaneous) ,Environmental Chemistry ,calcium carbonate ,Dissolution Kinetics ,0105 earth and related environmental sciences ,General Environmental Science ,Calcite ,Virulence ,biology ,Natural Magnesite ,Aragonite ,Carbonic-Anhydrase ,Biotechnological magnesite enrichment ,Limestone ,magnesite ,biology.organism_classification ,Lactic acid ,lactic acid bacteria ,Calcium carbonate ,chemistry ,Chemical engineering ,In-Vitro ,Food ,engineering ,Sedimentary rock ,Bacteria ,Magnesite - Abstract
Calcium carbonate (CaCO3) is found in different polymorph structures such as aragonite, vaterite, and calcite. The most common and stable form of CaCO3, calcite, which is abundant in sedimentary rocks as magnesite ore. Magnesite has application areas in many industrial fields including paper, pharmaceutical and refractory materials. Magnesite is theoretically formulated MgCO3, but contains many impurities (silicium, iron, and also calcite), that limits its usability and applicability. In this research, we aimed to investigate the decalcification possibility of the raw magnesite material through application of Enterococcus feacelis (EF) with CaCO3 dissolution ability. The exact mechanism of CaCO3 dissolution was investigated by carbonic anhydrase enzyme assay and HPLC analysis of organic acids produced by EF. Consequently, EF reduced the amount of CaCO3 from 2.94% to 0.49% which means a reduction (?83.33%) in the rate of CaCO3 percentage. As a result of the experiments, it was observed that different organic acids produced by bacteria reacted with CaCO3 and removed the lime of magnesite ore. The bacteria used in the study did not show any pathogenic properties in rats, thus, it can be used safely for the industrial applications. © 2020, © 2020 Informa UK Limited, trading as Taylor & Francis Group.
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- 2020
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30. Integrated transcriptome and in vitro analysis revealed anti-proliferative effect of sodium perborate on hepatocellular carcinoma cells
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Zehra Omeroglu Ulu, Zeynep Busra Bolat, and Fikrettin Sahin
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Inorganic Chemistry ,Carcinoma, Hepatocellular ,Borates ,Liver Neoplasms ,Molecular Medicine ,Humans ,Antineoplastic Agents ,Apoptosis ,Tumor Suppressor Protein p53 ,Transcriptome ,Biochemistry - Abstract
Hepatocelular carcinoma is one of the leading cancer types with no effective cure as poor prognosis is still a challenging aspect. Thus, alternative therapeutics are necessary to control hepatocelular carcinoma. Boron derivatives such as boric acid (BA), sodium perborate tetrahydrate (SPT) and sodium pentaborate pentahydrate (NaB) have been discovered to have anti-cancer effect. This study investigated the anti-proliferative effects of SPT against hepatocelular carcinoma (HCC) using in vitro and transcriptome approaches.Cytotoxic level of SPT on cell survival were detected using MTS assay. The apoptotic cell death and cell cycle arrest was determined using Annexin V/PI and cell cycle assay, respectively. Transcriptome analysis was performed using RNA-seq, followed by functional and KEGG pathway enrichment analysis. qPCR was used to validate the different genes.SPT treated HepG2 and Hep3B cells induced cytotoxicity having ICIn vitro experiments and RNA-seq analysis show anti-proliferative and apoptotic effect of SPT in HCC cells. Further studies might help in understanding the molecular mechanisms of SPT.
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- 2022
31. Klebsiella sp. S6; a halotolerant rhizosphere bacterium of Phragmites communis L. with potential plant-growth promotion of pepper
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Bakelli, A., Amrani, S., Nacer, A., Bouri, M., and Fikrettin Sahin
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Phragmites communis l ,Pgpr ,Klebsiella aerogenes ,Rhizosphere ,Arid environments ,Laboratorium voor Moleculaire Biologie ,Laboratory of Molecular Biology ,Maldi-tof ,Phylogeny - Abstract
Phragmites communis L. is a halophytic plant that can withstand harsh environmental conditions such as salinity. In the present study, we isolated a bacterium associated with the rhizosphere of Phragmites communis L. Based on morphological and biochemical as well as MALDI-TOF and 16S rRNA sequencing results, the strain S6 was identified as Klebsiella aerogenes with a score of 2.34 for MALDI-TOF and a similarity of 99.86% with type strain Klebsiella aerogenes KCTC 2190T. Furthermore, we demonstrated that strain S6 tolerated up to 2.5 M of NaCl and exhibited resistance to only three antibiotics that are frequently used for Enterobacteriaceae. Plant growth-promoting (PGP) results showed that the strain S6 had multiple traits, it was able to fix atmospheric nitrogen, solubilized inorganic phosphate (Ca3(PO4)2 and potassium in addition to the production of siderophores, ammonia, cellulase, protease and amylase. Indole acetic acid (IAA) production was also detected, and the strain S6 showed a positive ACC deaminase activity. Moreover, when the strain S6 was used as an inoculum for pepper seeds, increases in different parameters including shoot and root lengths and fresh and dry weights were shown under normal and saline conditions. We reported in this study, that the inoculation of pepper (Capsicum annuum L.) seeds with the Klebsiella sp. strain S6 was efficient for pepper growth in normal and salt stress conditions. The results of this study thus indicate that natural plants from saline habitats present a good source for isolating beneficial PGPR to grow crops like pepper under saline conditions.
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- 2022
32. Human ESC-derived Neuromesodermal Progenitors (NMPs) Successfully Differentiate into Mesenchymal Stem Cells (MSCs)
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Binnur Kıratlı, Engin Sümer, Fikrettin Sahin, Ayla Burcin Asutay, Hatice Burcu Şişli, Taha Bartu Hayal, Albert A. Rizvanov, Ayşegül Doğan, Derya Sağraç, and Selinay Şenkal
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education.field_of_study ,Receptor, Platelet-Derived Growth Factor alpha ,Mesenchymal stem cell ,Population ,Mesenchymal Stem Cells ,Mice, SCID ,Biology ,Embryonic stem cell ,Endothelial cell differentiation ,Cell biology ,Mesoderm ,Mice ,medicine.anatomical_structure ,Mice, Inbred NOD ,Pregnancy ,medicine ,Animals ,Humans ,Female ,Bone marrow ,Stem cell ,Progenitor cell ,education ,Adult stem cell - Abstract
Mesenchymal Stem Cells (MSCs), as an adult stem cell type, are used to treat various disorders in clinics. However, derivation of homogenous and adequate amount of MSCs limits the regenerative treatment potential. Although mesoderm is the main source of mesenchymal progenitors during embryonic development, neuromesodermal progenitors (NMPs), reside in the primitive streak during development, is known to differentiate into paraxial mesoderm. In the current study, we generated NMPs from human embryonic stem cells (hESC), subsequently derived MSCs and characterized this cell population in vitro and in vivo. Using a bFGF and CHIR induced NMP formation protocol followed by serum containing culture conditions; here we show that MSCs can be generated from NMPs identified by not only the expression of T/Bra and Sox 2 but also FLK-1/PDGFRα in our study. NMP-derived MSCs were plastic adherent fibroblast like cells with colony forming capacity and trilineage (osteo-, chondro- and adipo-genic) differentiation potential. In the present study, we demonstrate that NMP-derived MSCs have an endothelial tendency which might be related to their FLK-1+/PDGFRα + NMP origin. NMP-derived MSCs displayed a protein expression profile of characterized MSCs. Growth factor and angiogenesis related pathway proteins were similarly expressed in NMP-derived MSCs and characterized MSCs. NMP-derived MSCs keep characteristics after short-term and long-term freeze-thaw cycles and localized into bone marrow followed by tail vein injection into NOD/SCID mice. Together, these data showed that hESC-derived NMPs might be used as a precursor cell population for MSC derivation and could be used for in vitro and in vivo research.
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- 2021
33. Endothelial cell‐derived extracellular vesicles induce pro‐angiogenic responses in mesenchymal stem cells
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Hüseyin Abdik, Oğuz Kaan Kırbaş, Batuhan Turhan Bozkurt, Ezgi Avşar Abdik, Taha Bartu Hayal, Fikrettin Şahin, and Pakize Neslihan Taşlı
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angiogenesis ,differentiation ,endothelial cells ,exosome ,mesenchymal stem cell ,small extracellular vesicles ,Biology (General) ,QH301-705.5 - Abstract
Angiogenesis is a central component of vital biological processes such as wound healing, tissue nourishment, and development. Therefore, angiogenic activities are precisely maintained with secreted factors such as angiopoietin‐1 (Ang1), fibroblast growth factor (FGF), and vascular endothelial growth factor (VEGF). As an element of intracellular communication, extracellular vesicles (EVs)—particularly EVs of vascular origin—could have key functions in maintaining angiogenesis. However, the functions of EVs in the control of angiogenesis have not been fully studied. In this study, human umbilical vein endothelial cell line (HUVEC)‐derived small EVs (
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- 2024
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34. Production of parathyroid-like cells from thyroid stem cells in co-culture environment
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Özge Karabiyik Acar, Gülçin Delal Nozhatzadeh, Alperen Tuncer, Gamze Torun Köse, Ezgi Hacihasanoğlu, Fikrettin Sahin, and Erhan Aysan
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Stem Cells ,Thyroid Gland ,Humans ,General Medicine ,Coculture Techniques - Abstract
Parathyroid-like cells were aimed to be developed using cells isolated from thyroid since their embryological origins are the same.Activin A and sonic hedgehog (Shh) are the proteins used in differentiation (dif) medium. Parathyroid and thyroid cells were cultured in a 3-dimensional environment and divided into five groups: thyroid standard (st) medium, thyroid dif medium, parathyroid st medium, thyroid-parathyroid co-culture st medium, and thyroid-parathyroid co-culture dif medium. Throughout 28 days of incubation, groups were investigated by carrying out the live dead assay, confocal microscopy, real-time PCR, immunohistochemistry and biochemical assays.Thyroid-parathyroid co-culture cells grown in dif medium exhibited upregulated expressions of parathormone (PTH) (5.1-fold), PTH1R (3.6-fold), calcium sensing receptor (CaSR) (8.8-fold), and loss of thyroid-specific thyroid transcription factor 1 (TTF1) expression when compared to the thyroid st medium group. PTH secretion decreased by 35% in the parathyroid st medium group and 99.9% in the thyroid-parathyroid co-culture st medium group but decreased only 3.5% in the thyroid-parathyroid co-culture dif medium group on day 28.Using Activin A and Shh proteins, thyroid stem/progenitor cells were differentiated to parathyroid-like cells successfully in a co-culture environment. A potentially effective novel method for cell differenatiation is co-culture of cells having the same embryological origin.
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- 2022
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35. Novel dual-fluorescent flow cytometric approach for quantification of macrophages infected with
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Zeynep, Islek, Mehmet Hikmet, Ucisik, and Fikrettin, Sahin
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Macrophages ,Animals ,Leishmaniasis, Visceral ,Parasites ,Leishmania infantum ,Coloring Agents ,Flow Cytometry - Abstract
Flow cytometry analysis emerges as an alternative methodology to microscopy for determination of the Leishmania-infection rates of macrophages. Various flow cytometric approaches have been established for the quantification of Leishmania parasites within host cells, labelled either directly fluorescent dyes or indirectly with fluorescently conjugated antibodies. Although these techniques allow accurate quantification of infection, they fail at detection of non-infected macrophages specifically. This study introduces a new flow cytometric approach for the determination of infection rates of macrophages infected by Leishmania infantum parasites. Prior to infection, J774A.1 macrophages and L. infantum promastigotes were stained separately with PKH26 and PKH67 dyes, respectively. Dual staining enabled detection of each cell type, where non-infected macrophages were also recorded for the quantification. Dual-PKH staining achieved high success in selective staining of promastigotes (99.71%) and macrophages (99.57%). The percentages of parasite-infected macrophages were determined for initial 1:2.5 and 1:10 infection ratios as 15.68 and 61.70%, respectively; indicating significant increase in infection rate parallel to the initial treatment ratio. These results demonstrated that the introduced dual-fluorescence flow cytometric approach can be successfully used as an accurate and rapid quantification method for L. infantum-infected macrophages and strengthens the hypothesis that flow cytometric approaches could replace conventional microscopic methodologies.
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- 2021
36. Sodium pentaborate pentahydrate promotes hair growth through the Wnt/β-catenin pathway and growth factors
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Esma Inan Yuksel, Betul Demir, Demet Cicek, Kazim Sahin, Mehmet Tuzcu, Cemal Orhan, Ilknur Calik, and Fikrettin Sahin
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Vascular Endothelial Growth Factor A ,Biochemistry ,Rats ,Inorganic Chemistry ,Rats, Sprague-Dawley ,Transforming Growth Factor beta1 ,Borates ,Molecular Medicine ,Animals ,Collagen ,Rats, Wistar ,Wnt Signaling Pathway ,beta Catenin ,Hair - Abstract
Boron (B) is an element involved in many physiological processes in humans and accelerates wound healing and increases angiogenesis. This study aimed to evaluate the possible effects of sodium pentaborate pentahydrate (NaB) on hair growth and reveal its effects on Wnt-1, β-catenin, vascular endothelial growth factor (VEGF), platelet-derived growth factor (PDGF), and transforming growth factor-β1 (TGF-β1) signaling pathways, which are important molecular mechanisms involved in hair growth.Thirty-five Sprague-Dawley/Wistar albino rats were randomly divided into five groups: non-shaved control, shaved control, NaB 1 mg (shaved + NaB 1 mg elemental B/kg CA), NaB 2 mg (shaved + NaB 2 mg elemental B/kg CA), and NaB 4 mg (shaved + NaB 4 mg elemental B/kg CA). Hair density was measured using the trichoscopy method. Dorsal skin samples were examined histopathologically at the end of the 42nd day, and follicle count, follicle diameter, and subcutaneous tissue thickness were recorded. Wnt-1, β-catenin, PDGF, VEGF, TGF-βIn trichoscopy measurements, hair density increased in the NaB 4 mg group (90.9%). In histopathological examination, anagen follicles were observed to increase in the NaB 1 mg and 2 mg groups (p 0.05). Follicle diameter increased in all NaB groups (p 0.05). The Wnt-1, β-catenin, PDGF, VEGF, TGF-βNaB 1 and 2 mg B/kg supplementation induces the anagen phase in rats via Wnt-1, β-catenin, VEGF, PDGF, and TGF-β1 signaling pathways. NaB 4 mg B/kg suppresses these pathways and adversely affects hair growth.
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- 2021
37. The Preventive Effects of Boron-Based Gel on Radiation Dermatitis in Patients Being Treated for Breast Cancer: A Phase III Randomized, Double-Blind, Placebo-Controlled Clinical Trial
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Fikrettin Sahin, Mohammad Bagher Pirouzpanah, Hossein Bijanpour, Mohammad Mohammadzadeh, Reza Eghdam Zamiri, Amir Ghasemi Jangjoo, Behnam Nasiri, Hojjatollah Saboori, Ayşegül Doğan, Selami Demirci, Erhan Ayşan, Ahmet Çağrı Büke, Ali Reza Naseri, Seyed Kazem Shakouri, Dawood Aghamohammadi, Mostafa Alizade-Harakiyan, and Farshad Seyed Nejad
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Adult ,Cancer Research ,Adolescent ,Breast Neoplasms ,Hematology ,Middle Aged ,Young Adult ,Oncology ,Double-Blind Method ,Humans ,Female ,Radiodermatitis ,Aged ,Boron - Abstract
Introduction: Radiation dermatitis (RD) is a side effect of radiation therapy (RT) which is experienced by over 90% of patients being treated for breast cancer. The current clinical trial was conducted to measure the preventative effects of a boron-based gel on several different clinical outcomes (dermatitis, erythema, dry desquamation, and moist desquamation) after 25 radiotherapy sessions. Methods: This research used a double-blind parallel-group design with a placebo control (n = 76) and randomized group (n = 181), with all participants being between 18 and 75 years old. Fifteen minutes before each radiotherapy, participants in the intervention group were given a gel containing 3% sodium pentaborate pentahydrate, while those in the placebo group received a gel with no chemical substance. Dermatitis, erythema, dry desquamation, and moist desquamation were compared between the 2 groups. Results: At baseline, there were no significant differences between the groups (p > 0.05), except for body mass index. After 14 days of treatment, dermatitis (98.7% vs. 9.9%; p < 0.001), erythema (96.1% vs. 12.2%; p < 0.001), dry desquamation (50% vs. 3.9%; p < 0.001), and moist desquamation (18.4% vs. 0.6%; p < 0.001) were much more common in the placebo group than the intervention group. To prevent dermatitis, erythema, dry desquamation, and moist desquamation in 1 patient, on average, 1.1 (95% confidence interval [CI]: 1.1–1.2), 1.2 (95% CI: 1.1–1.3), 2.2 (95% CI: 1.7–2.9), and 5.6 (95% CI: 3.8–11.0) patients need to be treated, respectively. Conclusion: The boron-based gel has a significant preventive effect on several categories of RD which might be used by clinicians in breast cancer.
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- 2021
38. The role of TNF-α in chordoma progression and inflammatory pathways
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Uğur Türe, Mesut Sahin, Emre Can Tuysuz, Fikrettin Sahin, Altay Burak Dalan, Aysegul Kuskucu, Omer Faruk Bayrak, Cumhur Kaan Yaltirik, Ferda Ozkan, and Sukru Gulluoglu
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Male ,0301 basic medicine ,Cancer Research ,Neutrophils ,Leukemia Inhibitory Factor ,B7-H1 Antigen ,0302 clinical medicine ,Cell Movement ,ATP Binding Cassette Transporter, Subfamily G, Member 2 ,Lymphocytes ,Child ,General Medicine ,Middle Aged ,Prognosis ,Neoplasm Proteins ,Oncology ,Receptors, Tumor Necrosis Factor, Type I ,030220 oncology & carcinogenesis ,Disease Progression ,Molecular Medicine ,Female ,Tumor necrosis factor alpha ,medicine.symptom ,Signal Transduction ,Adult ,musculoskeletal diseases ,Epithelial-Mesenchymal Transition ,Bone Neoplasms ,Inflammation ,Young Adult ,03 medical and health sciences ,Cell Line, Tumor ,Biomarkers, Tumor ,Chordoma ,medicine ,Humans ,Epithelial–mesenchymal transition ,Neutrophil to lymphocyte ratio ,Aged ,Retrospective Studies ,Tumor Necrosis Factor-alpha ,business.industry ,Cancer ,medicine.disease ,030104 developmental biology ,Primary bone ,Drug Resistance, Neoplasm ,Tumor progression ,Cancer research ,business - Abstract
Chordomas are highly therapy-resistant primary bone tumors that exhibit high relapse rates and may induce local destruction. Here, we evaluated the effects of tumor necrosis factor-alpha (TNF-α) on chordoma progression and clinical outcome. Chordoma cells were treated with TNF-α after which its short- and long-term effects were evaluated. Functional assays, qRT-PCR and microarray-based expression analyses were carried out to assess the effect of TNF-α on chemo-resistance, epithelial to mesenchymal transition (EMT), migration, invasion and cancer stem cell-like properties. Finally, relationships between TNF-α expression and clinicopathological features were assessed in a chordoma patient cohort. We found that TNF-α treatment increased the migration and invasion of chordoma cells. Also, NF-κB activation was observed along with increased EMT marker expression. In addition, enhanced tumor sphere formation and soft agar colony formation were observed, concomitantly with increased chemo-resistance and CD338 marker expression. The TNF-α and TNFR1 expression levels were found to be significantly correlated with LIF, PD-L1 and Ki67 expression levels, tumor volume and a short survival time in patients. In addition, a high neutrophil to lymphocyte ratio was found to be associated with recurrence and a decreased overall survival. From our data we conclude that TNF-α may serve as a prognostic marker for chordoma progression and that tumor-promoting inflammation may be a major factor in chordoma tumor progression.
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- 2019
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39. Suppressor Effects of Sodium Pentaborate Pentahydrate and Pluronic F68 on Adipogenic Differentiation and Fat Accumulation
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Nezaket Türkel, Elif Burce Elbasan, Hatice Damla Kayhan, Fikrettin Sahin, Aysu Bilge Yilmaz, and Sidika Tapsin
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0303 health sciences ,Hippo signaling pathway ,Adiponectin ,Kinase ,Endocrinology, Diabetes and Metabolism ,030302 biochemistry & molecular biology ,Biochemistry (medical) ,Clinical Biochemistry ,General Medicine ,010501 environmental sciences ,01 natural sciences ,Biochemistry ,Inorganic Chemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Downregulation and upregulation ,chemistry ,Adipogenesis ,Adipocyte ,Cancer research ,Oil Red O ,Stem cell ,0105 earth and related environmental sciences - Abstract
Obesity is a major public health problem worldwide and a risk factor for certain diseases, including cardiovascular disease, diabetes, cancer, and depression. Unfortunately, currently available anti-obesity drugs have failed in the long-term maintenance of weight control. It has been a challenge to design novel drugs that could potentially treat obesity or prevent uncontrolled weight-gain which lies underneath the pathology of obesity. Since obesity in a way is a consequence of the accumulating new mature adipocytes from undifferentiated precursors which is a process also termed as adipogenesis, drugs that might control adipogenesis could be beneficial for the treatment of obesity. In the current study, combined effect of sodium pentaborate pentahydrate (NaB) and pluronic F68 on adipogenic differentiation was examined by administering various combinations of the two agents to human adipose-derived stem cells (hADSCs) in in vitro. Immunocytochemistry and quantitative RT-PCR were performed to evaluate the levels of adipogenesis-promoting genes such as peroxisome proliferator-activated receptor-γ (PPARγ), fatty acid binding protein (FABP4), and adiponectin. Results indicated that expressions of all these three genes were restrained. Furthermore, Oil Red O staining revealed that lipid vesicle formation was reduced in hADSCs treated with differentiation medium containing NaB/F68 combination. Finally, expression levels of Hippo pathway kinases Lats2, MST1, and scaffold protein Sav1 were reduced in these cells, suggesting a possible link between Hippo pathway-dependent downregulation of PPARγ and the NaB/F68 treatment. Herein, we showed that combination of NaB and F68 curtails adipocyte differentiation by inhibiting the adipogenic transcriptional program leading to a decrease in lipid accumulation in adipocytes even at very low doses, thereby uncovered a striking opportunity to use this combination in obesity treatment.
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- 2019
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40. Design of Colloidally Stable and Non‐Toxic Petox‐Based Polymersomes for Cargo Molecule Encapsulation
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Berrin Küçüktürkmen, Umut Can Oz, Ozgur Yilmaz, Dilek Telci, Fikrettin Sahin, Umut Ugur Ozkose, Sevgi Gulyuz, Asuman Bozkir, and Zeynep Busra Bolat
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Biomaterials ,Renewable Energy, Sustainability and the Environment ,Chemistry ,Polymersome ,Materials Chemistry ,Energy Engineering and Power Technology ,Nanoparticle ,Molecule ,Nanotechnology ,Self-assembly ,Encapsulation (networking) - Published
- 2019
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41. Thermoplastic elastomers containing antimicrobial and antiviral additives for mobility applications
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Zeynep Iyigundogdu, Basak Basar, Rachel Couvreur, Sandeep Tamrakar, Jaewon Yoon, Osman G. Ersoy, Fikrettin Sahin, Deborah Mielewski, and Alper Kiziltas
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Mechanics of Materials ,Mechanical Engineering ,Ceramics and Composites ,Industrial and Manufacturing Engineering - Abstract
The transmission of the SARS-CoV-2 coronavirus has been shown through droplets generated by infected people when coughing, sneezing, or talking in close contact. These droplets either reach the next person directly or land on nearby surfaces. The objective of this study is to develop a novel, durable, and effective disinfecting antimicrobial (antiviral, antibacterial, and antifungal) styrene-ethylene/butylene-styrene (SEBS) based thermoplastic elastomers (TPE). TPE incorporated with six different formulations was investigated for mechanical and antiviral performance. The formulations consist of a combination of zinc pyrithione (ZnPT), sodium pentaborate pentahydrate (NaB), disodium octaborate tetrahydrate (DOT), and chlorhexidine (CHX). ZnPT and DOT incorporated TPE showed a reduction of microbes such as bacteria by up to 99.99%, deactivated Adenovirus, Poliovirus, Norovirus, and reduced a strain of the coronavirus family by 99.95% in 60 min on TPE samples. Control samples had higher tensile strengths among all formulations and tensile strength decreased by around 14%, 21% and 27% for ZnPT and DOT combinations compared to control samples. The elongation at break decreased by around 7%, 9% and 12% with ZnPT and DOT combinations, where it reached minimum values of 720%, 702% and 684%, respectively. The 100% Modulus and 300% Modulus slightly increased with ZnPT and NaB combination (reaching values from 1.6 to 1.9 MPa and 2.6-2.9 MPa respectively) in comparison with control samples. The MFI also decreased with antimicrobial and antiviral additives (decreasing values from 64.8 to 43.3 g/10 min). ZnPT and NaB combination showed the lowest MFI (43.3 g/10 min) and reduced the MFI of control sample by around 33%. TPE samples containing ZnPT and DOT combination showed biocidal activity against the microorganisms tested and can be used to develop antimicrobial products for multiple touchpoints within a vehicle and micro-mobility.
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- 2022
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42. Biological control of the potato dry rot caused by Fusarium species using PGPR strains
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Recep, Kotan, Fikrettin, Sahin, Erkol, Demirci, and Cafer, Eken
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- 2009
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43. Poly(2-ethyl-2-oxazoline-co-ethyleneimine)-block-poly(epsilon-caprolactone) based micelles: synthesis, characterization, peptide conjugation and cytotoxic activity
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Asuman Bozkir, Salih Özçubukçu, Fikrettin Sahin, Asli Kara, Polen Koçak, Mehmet Seçkin Kesici, Naile Öztürk, Sevgi Gulyuz, Onur Alpturk, Ozgur Yilmaz, Melek Parlak Khalily, Imran Vural, Zeynep Busra Bolat, Dilek Telci, Umut Ugur Ozkose, and [Belirlenecek]
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PARTIAL HYDROLYSIS ,PH ,EFFICIENT ,Peptide ,SENSITIVE POLYMERIC MICELLES ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Micelle ,Catalysis ,Polymer chemistry ,PEG ratio ,BLOCK-COPOLYMER MICELLES ,Materials Chemistry ,Cytotoxic T cell ,DRUG-DELIVERY ,chemistry.chemical_classification ,CODELIVERY ,Ethyleneimine ,[No Keywords] ,General Chemistry ,021001 nanoscience & nanotechnology ,CARRIERS ,2-ethyl-2-oxazoline ,PEG ,0104 chemical sciences ,chemistry ,Drug delivery ,Click chemistry ,CLICK CHEMISTRY ,0210 nano-technology - Abstract
Here we present self-assembled polymeric micelles as potential delivery systems for therapeutic agents with highly tunable properties. The major goal of this study is to design breast and prostate cancer specific targeting peptide modified PEtOx-co-PEI-b-PCL block copolymer based micelles as a targetable carrier system in cancer treatment. For this, a series of micelles based on poly(2-ethyl-2-oxazoline)-co-polyethyleneimine-block-poly(epsilon-caprolactone) [P(EtOx-co-EI)-b-PCL] copolymers with two different proportions of PEI (30% and 60% hydrolysis degrees of PEtOx) were successfully prepared. The block copolymers were synthesized using a combination of living cationic ring-opening polymerization and a copper(i)-catalyzed azide-alkyne cycloaddition (CuAAC) click reaction. Then, peptide 18 and peptide 563 were conjugated to P(EtOx-co-EI)-b-PCL through a thiol-ene click-type reaction to obtain the desired tumor-targeting. The structural properties of the copolymers were confirmed by H-1 NMR, FT-IR, UV-Vis spectrometry and GPC. Peptide and non-peptide-conjugated micelles with particle sizes between 82 +/- 0.6 and 170 +/- 10.7 nm were obtained by self-assembly with two different chain lengths of PEI blocks. The micelles containing the 60% PEI block showed increased zeta potential values. The cytotoxicity of the copolymers was evaluated under in vitro conditions. Overall, our results indicate that the micelles prepared with peptide-conjugated block copolymers can be used as potential nanocarriers for targeted therapeutic delivery systems. Scientific and Technological Research Council of Turkey (TUBITAK)Turkiye Bilimsel ve Teknolojik Arastirma Kurumu (TUBITAK) [213M725] The authors would like to thank the Scientific and Technological Research Council of Turkey (TUBITAK) for financial support with grant number 213M725. WOS:000678167300001 2-s2.0-85113149945
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- 2021
44. Organoids in Tissue Transplantation
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Derya Sağraç, Selinay Şenkal, Taha Bartu Hayal, Fikrettin Sahin, Ayşegül Doğan, and Hatice Burcu Şişli
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Transplantation ,3D cell culture ,Tissue transplantation ,medicine.anatomical_structure ,Cell culture ,Cell ,medicine ,Organoid ,Viability assay ,Computational biology ,Biology ,Stem cell - Abstract
Improvements in stem cell-based research and genetic modification tools enable stem cell-based tissue regeneration applications in clinical therapies. Although inadequate cell numbers in culture, invasive isolation procedures, and poor survival rates after transplantation remain as major challenges, cell-based therapies are useful tools for tissue regeneration.Organoids hold a great promise for tissue regeneration, organ and disease modeling, drug testing, development, and genetic profiling studies. Establishment of 3D cell culture systems eliminates the disadvantages of 2D models in terms of cell adaptation and tissue structure and function. Organoids possess the capacity to mimic the specific features of tissue architecture, cell-type composition, and the functionality of real organs while preserving the advantages of simplified and easily accessible cell culture models. Thus, organoid technology might emerge as an alternative to cell and tissue transplantation. Although transplantation of various organoids in animal models has been demonstrated, lioitations related to vascularized structure formation, cell viability and functionality remain as obstacles in organoid-based transplantation therapies. Clinical applications of organoid-based transplantations might be possible in the near future, when limitations related to cell viability and tissue integration are solved. In this review, the literature was analyzed and discussed to explore the current status of organoid-based transplantation studies.
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- 2021
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45. Gamma-irradiated SARS-CoV-2 vaccine candidate, OZG-38.61.3, confers protection from SARS-CoV-2 challenge in human ACEII-transgenic mice
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Selen Abanuz, Umit Ince, Cansu Hemsinlioglu, Ercument Ovali, Gamze Tümentemur, Ilayda Sahin, Dilek Telci, Cavit Kerem Kayhan, Ugur Ozbek, Cihan Tastan, Fikrettin Sahin, Miyase Ezgi Kocaoglu, Gozde Sir Karakus, Gurler Akpinar, Ozden Hatirnaz Ng, Gurcan Ertop, Merve Acikel Elmas, Recai Kuzay, Sevda Demir, Murat Kasap, Derya Dilek Kancagi, Serap Arbak, Raife Dilek Turan, Koray Yalcin, Muhammer Elek, Fatma Tokat, Sezer Akyoney, Samed Ozer, Siret Ratip, Ayse Sesin Kocagoz, Didem Cakirsoy, Utku Seyis, Bulut Yurtsever, and Acibadem University Dspace
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COVID-19 Vaccines ,viruses ,Science ,Dose-Response Relationship, Immunologic ,Mice, Transgenic ,Pathogenesis ,Antibodies, Viral ,Virus Replication ,Article ,Virus ,Mice ,Immune system ,Immunity ,Chlorocebus aethiops ,Animals ,Humans ,Medicine ,Lung ,Vero Cells ,Mice, Inbred BALB C ,Multidisciplinary ,biology ,SARS-CoV-2 ,business.industry ,Immunogenicity ,Viral Vaccine ,Vaccination ,COVID-19 ,Hepatitis A ,medicine.disease ,Antibodies, Neutralizing ,Virology ,Vaccines, Inactivated ,Viral replication ,Immunization ,Gamma Rays ,Inactivated vaccine ,biology.protein ,Infectious diseases ,Cytokines ,RNA, Viral ,Angiotensin-Converting Enzyme 2 ,Antibody ,business - Abstract
The SARS-CoV-2 virus caused the most severe pandemic around the world, and vaccine development for urgent use became a crucial issue. Inactivated virus formulated vaccines such as Hepatitis A, oral polio vaccine, and smallpox proved to be reliable approaches for immunization for prolonged periods. During the pandemic, we produced an inactivated SARS-CoV-2 vaccine candidate, having the advantages of being manufactured rapidly and tested easily in comparison with recombinant vaccines. In this study, an inactivated virus vaccine that includes a gamma irradiation process for the inactivation as an alternative to classical chemical inactivation methods so that there is no extra purification required has been optimized. The vaccine candidate (OZG-38.61.3) was then applied in mice by employing the intradermal route, which decreased the requirement of a higher concentration of inactivated virus for proper immunization, unlike most of the classical inactivated vaccine treatments. Hence, the novelty of our vaccine candidate (OZG-38.61.3) is that it is a non-adjuvant added, gamma-irradiated, and intradermally applied inactive viral vaccine. Efficiency and safety dose (either 1013 or 1014 viral copy per dose) of OZG-38.61.3 was initially determined in Balb/c mice. This was followed by testing the immunogenicity and protective efficacy of OZG-38.61.3. Human ACE2-encoding transgenic mice were immunized and then infected with a dose of infective SARS-CoV-2 virus for the challenge test. Findings of this study show that vaccinated mice have lower SARS-CoV-2 viral copy number in oropharyngeal specimens along with humoral and cellular immune responses against the SARS-CoV-2, including the neutralizing antibodies similar to those shown in Balb/c mice without substantial toxicity. Subsequently, plans are being made for the commencement of Phase 1 clinical trial of the OZG-38.61.3 vaccine for the COVID-19 pandemic.
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- 2020
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46. Ubiquitin-specific protease 7 downregulation suppresses breast cancer in vitro
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Ayşegül Doğan, Taha Bartu Hayal, Binnur Kıratlı, Fikrettin Sahin, and Hatice Burcu Şişli
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Physiology ,0206 medical engineering ,02 engineering and technology ,p5091 ,Microbiology ,Article ,Metastasis ,03 medical and health sciences ,0302 clinical medicine ,Breast cancer ,breast cancer ,Genetics ,medicine ,skin and connective tissue diseases ,Molecular Biology ,Biology ,Gene knockdown ,biology ,Cell growth ,gene editing ,Ubiquitination ,Cancer ,Cell migration ,Cell Biology ,Cell cycle ,medicine.disease ,020601 biomedical engineering ,030220 oncology & carcinogenesis ,biology.protein ,Cancer research ,USP7 ,Mdm2 ,General Agricultural and Biological Sciences ,Biyoloji ,Ubiquitination,breast cancer,USP7,p5091,gene editing - Abstract
Because breast cancer is complicated at the pathological, histological, clinical, and molecular levels, identification of new genetic targets against carcinogenic pathways is required to generate clinically relevant treatment options. In the current study, ubiquitin-specific protease 7 (USP7), which regulates various cellular pathways including Mdm2, p53, and NF-kappa B, was selected as a potential gene editing strategy for breast cancer in vitro. Anticancer activity of USP7 gene suppression has been evaluated through cell proliferation, gene expression, cell cycle, sphere dissemination, and cell migration analysis. Here, siRNA and shRNA strategies and an allosteric small-molecule inhibitor of USP7 were used to define potential anticancer activity against MCF7 and T47D human breast cancer cell lines. Both blockage of deubiquitination by p5091 and knockdown of USP7 reduced cell proliferation, cell migration, colony formation, and sphere dissemination for both MCF7 and T47D breast cancer cell lines. Restriction of USP7 activity strongly enhanced apoptotic gene expression and reduced metastatic ability of breast cancer cell lines. This study describes one potential molecular target for the suppression of breast cancer proliferation and metastasis. Identification of USP7 as a promising gene editing candidate might open up the possibility of new molecular drug research in targeting the ubiquitination pathway in cancer.
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- 2020
47. Reduced regulatory T cells with increased proinflammatory response in patients with schizophrenia
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Ismet Kirpinar, Ayse Kurtulmus, Tunc Akkoc, Fikrettin Sahin, Noushin Zibandey, Yazgul Duran, Sinan Guloksuz, Muazzez Gokalp, Cigdem Sahbaz, RS: MHeNs - R2 - Mental Health, Psychiatrie & Neuropsychologie, and ŞAHBAZ, Çiğdem Dilek
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medicine.medical_specialty ,BLOOD ,Regulatory T cell ,medicine.medical_treatment ,T cell ,Adaptive immunity ,1ST EPISODE ,LYMPHOCYTES ,Peripheral blood mononuclear cell ,Proinflammatory cytokine ,SERUM ,PATHWAY ,03 medical and health sciences ,DOPAMINE ,0302 clinical medicine ,Internal medicine ,FoxP3 ,medicine ,IL-17A ,METAANALYSIS ,GENE-EXPRESSION ,Pharmacology ,business.industry ,FOXP3 ,Acquired immune system ,030227 psychiatry ,CYTOKINE ,medicine.anatomical_structure ,Cytokine ,Endocrinology ,Schizophrenia ,Tumor necrosis factor alpha ,DRUG-NAIVE ,business ,030217 neurology & neurosurgery ,Sahbaz C., Zibandey N., KURTULMUŞ A., Duran Y., Gokalp M., KIRPINAR İ., ŞAHİN F., Guloksuz S., AKKOÇ T., -Reduced regulatory T cells with increased proinflammatory response in patients with schizophrenia-, PSYCHOPHARMACOLOGY, cilt.237, ss.1861-1871, 2020 - Abstract
Aim To investigate whether circulating T cells including regulatory T cells (Treg) and derived cytokines contribute to the immune imbalance observed in schizophrenia. Methods Forty patients with schizophrenia and 40 age, sex, body mass index, education, and smoking status-matched healthy controls (HC) are included in the study. We stained cells with anti-CD14, anti-CD3, anti-CD4, anti-CD8, anti-CD19, anti-CD20, and anti-CD16/56. Peripheral blood mononuclear cells (PBMCs) were isolated and stained with the human FoxP3 kit containing anti-CD4/anti-CD25 and intracellular anti-Foxp3. PBMCs were cultured for 72 h and stimulated with anti-CD3/anti-CD28. Cytokines (IL-2, IL-4, IL-6, IL-10, IFN-gamma, TNF-alpha, and IL-17A) were measured from the culture supernatant and plasma using the Th1/Th2/Th17 cytokine bead array kit. Results In comparison with HC, Treg percentages in schizophrenia were higher (1.17 +/- 0.63 vs 0.81 +/- 0.53, P = 0.005) in unstimulated but lower in the stimulated condition (0.73 +/- 0.69 vs 0.97 +/- 0.55, P = 0.011). Activated T cell percentages were higher in schizophrenia than HC in unstimulated (2.22 +/- 0.78 vs 1.64 +/- 0.89, P = 0.001) and stimulated (2.25 +/- 1.01 vs 1.72 +/- 1.00, P = 0.010) conditions. The culture supernatant levels of IL-6 (7505.17 +/- 5170.07 vs 1787.81 +/- 1363.32, P < 0.001), IL-17A (191.73 +/- 212.49 vs 46.43 +/- 23.99, P < 0.001), TNF-alpha (1557 +/- 1059.69 vs 426.57 +/- 174.62, P = 0.023), and IFN-gamma (3204.13 +/- 1397.06 vs 447.79 +/- 270.13, P < 0.001); and plasma levels of IL-6 (3.83 +/- 3.41vs 1.89 +/- 1.14, P = 0.003) and IL-17A (1.20 +/- 0.84 vs 0.83 +/- 0.53, P = 0.033) were higher in patients with schizophrenia than HC. Conclusion Our explorative study shows reduced level of Foxp3 expressing Treg in a stimulated condition with induced levels of proinflammatory cytokines in patients with schizophrenia.
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- 2020
48. Isolation, identification and characterization of three new strains of Bacillus sphaericus as mosquito pathogen
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Fikrettin Sahin, Ali Umman Dogan, Münevver Müge Çağal, and Fatih Cakar
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biology ,fungi ,Identification (biology) ,biology.organism_classification ,Isolation (microbiology) ,Bacillus sphaericus ,Pathogen ,Biology ,Bacillus sphaericus,Mosquito,Biocontrol ,Biyoloji ,Microbiology - Abstract
In the present study, three entomopathogenic strains of Bacillus sphaericus (MBI5, MBI6, and MBI7) were isolated from greenhouse pest and larval habitat of Istanbul, Turkey. All of the MBI groups tested in laboratory bioassays were able to kill larvae, but not pupae and adults of Culex spp. in water. The most efficient larvicidal activity of the strains was found in the presence of two toxin genes, binA and binB for MBI5, MBI6, and MBI7 strains. Each B. sphaericus strains identified in this study were characterized as unique and novel in terms of fatty acid methyl ester (FAME) profiles and 16S rRNA sequencing data. The results of this study suggest that the three strains of B. sphaericus may be new sources of potential biocontrol agent of mosquito.
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- 2020
49. Effects of Glycerol and Sodium Pentaborate Formulation on Prevention of Postoperative Peritoneal Adhesion Formation
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Ruzgar Catal, Fikrettin Sahin, Erhan Aysan, Alev Cumbul, and Mirkhaliq Javadov
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medicine.medical_specialty ,Article Subject ,Urology ,Anterior wall ,030209 endocrinology & metabolism ,Synergistic mechanism ,Postoperative peritoneal adhesions ,Caecum ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,medicine ,Glycerol ,biology ,business.industry ,Obstetrics and Gynecology ,Adhesion ,Gynecology and obstetrics ,biology.organism_classification ,chemistry ,030220 oncology & carcinogenesis ,RG1-991 ,Peritoneal adhesion ,business ,Sodium pentaborate ,Research Article - Abstract
Background. Postoperative peritoneal adhesions (PPA) are a serious problem for abdominal surgery. An effective remedy has not been found yet. New formulation of glycerol and sodium pentaborate may be able to solve the problem. Method. Female Wistar albino rats were randomly assigned into four equal groups. The adhesion model was created on the caecum anterior wall and covered with 2 ml 0.9% NaCl, 3% glycerol, 3% sodium pentaborate, and 3% glycerol plus 3% sodium pentaborate solutions in the groups, respectively. Two weeks later, the rats were sacrificed. PPA were graded macroscopically and microscopically. Results. Total adhesion scores of the 3% glycerol + 3% sodium pentaborate group were statistically different from the other groups for macroscopic and also microscopic evaluations (p<0.001). Conclusion. 3% glycerol plus 3% sodium pentaborate as a new formulation has preventive effects on PPA with a synergistic mechanism.
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- 2020
50. Regenerative Effect Of Resorbable Scaffold Embedded Boron-Nitride/Hydroxyapatite Nanoparticles In Rat Parietal Bone
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Muhammed Yayla, Zekai Halici, Nuran Ay, Selami Demirci, Adem Karaman, Elif Cadirci, Feray Bakan, Fikrettin Sahin, Yayla, M, Cadirci, E, Halici, Z, Bakan, F, Ay, N, Demirci, S, Şahin, Fikrettin, Yeditepe Üniversitesi, and Anadolu Üniversitesi
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Scaffold ,Bone Regeneration ,Materials science ,medicine.medical_treatment ,Biomedical Engineering ,Bioengineering ,02 engineering and technology ,Osteotomy ,BN ,Parietal Bone ,Rats, Sprague-Dawley ,chemistry.chemical_compound ,Osteogenesis ,medicine ,Animals ,General Materials Science ,Boron-Nitride ,Bone ,Hydroxyapatite nanoparticles ,Boron ,Bone growth ,Tissue Scaffolds ,Adult female ,Skull ,General Chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Cranioplasty ,Rats ,Durapatite ,medicine.anatomical_structure ,chemistry ,Boron nitride ,Nanoparticles ,Female ,Defect ,0210 nano-technology ,Parietal bone ,Biomedical engineering - Abstract
Karaman, Adem/0000-0002-3091-0609; Yayla, Muhammed/0000-0002-0659-3084, WOS: 000484777500004, PubMed: 31383063, BN has important roles in several physiological events, including bone growth and immune system. New infection-free cranioplasty and has an osteogenic activities material that are compatible with tissue are being developed. We aimed in our study to examine whether different combinations of Boron-nitride/Hydroxyapatite are embedded into the scaffold in the treatment of calvarial defects. 200 adult female Sprague-Dawley rats divided into 10 equal groups. Osteotomy was made by trepan drill in 8 mm diameter. the scaffolds were placed in the rats and were left to recovery for 2 months. During the experiment, CT scans were taken from the calvarial areas of the rats in the 2nd, 4th and 8th weeks. Significant healing was observed in defect diameters in 2.5% BN + 10% HA, 2.5% BN and 5% BN + 10% HA, respectively. After 8 weeks, it was seen that the amounts of OPN, BMP-2, RunX2 and ALP mRNA expression significantly decreased in 2.5% BN + 10% HA, 2.5% BN, 5% BN + 10% HA and 5% BN groups. It was shown that bone recovery was at the best grade in the groups, which contained 2.5% BN and 2.5% BN + 10% HA when compared to the other groups. BN is a very promising agent that will be used in reconstructive surgery for the treatment of calvarial bone defects., scientific and technological research council of turkey (TUBITAK)Turkiye Bilimsel ve Teknolojik Arastirma Kurumu (TUBITAK) [112M495], This work was supported by [scientific and technological research council of turkey (TUBITAK)] under Grant [number 112M495].
- Published
- 2020
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