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Accurate measurement of enzyme kinetics is an essential part of understanding the mechanisms of biochemical reactions. The typical means of studying such systems use stirred cuvettes, stopped-flow apparatus, microfluidic systems, or other small sample containers. These methods may prove to be problematic if reactants or products adsorb to or react with the container's surface. As an alternative approach, we have developed an acoustically-levitated drop reactor eventually intended to study enzyme-catalyzed reaction kinetics related to free radical and oxidative stress chemistry. Microliter-scale droplet generation, reactant introduction, maintenance, and fluid removal are all important aspects in conducting reactions in a levitated drop. A three capillary bundle system has been developed to address these needs. We report kinetic measurements for both luminol chemiluminescence and the reaction of pyruvate with nicotinamide adenine dinucleotide, catalyzed by lactate dehydrogenase, to demonstrate the feasibility of using a levitated drop in conjunction with the developed capillary sample handling system as a microreactor. 10.1021/ac901400y

Demographic rates are rarely estimated over an entire species range, limiting empirical tests of ecological patterns and theories, and raising questions about the representativeness of studies that use data from a small part of a range. The uncertainty that results from using demographic rates from just a few sites is especially pervasive in population projections, which are critical for a wide range of questions in ecology and conservation. We developed a simple simulation to quantify how this lack of geographic representativeness can affect inferences about the global mean and variance of growth rates, which has implications for the robust design of a wide range of population studies. Using a coastal songbird, saltmarsh sparrow Ammodramus caudacutus, as a case study, we first estimated survival, fecundity, and population growth rates at 21 sites distributed across much of their breeding range. We then subsampled this large, representative dataset according to five sampling scenarios in order to simulate a variety of geographic biases in study design. We found spatial variation in demographic rates, but no large systematic patterns. Estimating the global mean and variance of growth rates using subsets of the data suggested that at least 10–15 sites were required for reasonably unbiased estimates, highlighting how relying on demographic data from just a few sites can lead to biased results when extrapolating across a species range. Sampling at the full 21 sites, however, offered diminishing returns, raising the possibility that for some species accepting some geographical bias in sampling can still allow for robust range‐wide inferences. The subsampling approach presented here, while conceptually simple, could be used with both new and existing data to encourage efficiency in the design of long‐term or large‐scale ecological studies. [ABSTRACT FROM AUTHOR]

There is growing evidence to support that paleo‐timescale events are important determinants in the present‐day distribution of organisms. We explored the relationship between community composition of tidal marsh birds in the northeastern United States and potential drivers of biodiversity patterns across timescales to explore the relevance of historical contingency in this ecosystem. These potential predictors represent some of the major known influences on biodiversity in tidal marshes, including 1) a recent, intense hurricane event driving a large‐scale perturbation of this ecosystem (4 yr), 2) gradual modification of marshes through installation of human infrastructure (∼ 150 yr), and 3) marsh formation and development after the Last Glacial Maximum (LGM, ∼ 20 000 yr). We surveyed > 1300 locations in tidal marshes from 2011–2014 using passive point count methods to measure bird community composition at these points. We found that rarefied richness, total individuals (N), and total biomass were best explained by a quadratic relationship with marsh age peaking at 40° latitude, the location of the Last Glacial Maximum of the Laurentide ice sheet. We hypothesize that formation of marsh millennia earlier in the southern part of our survey area allowed for earlier evolution of specialization to tidal marsh by bird species than those occupying much younger, northern marshes, which could have then driven differential rates of colonization in the north (by habitat generalists) and competitive exclusion in the south (by habitat specialists). We tested this theory using a novel functional diversity metric (community habitat specialization index, or CHSI) and find that community specialization decreased linearly with marsh age, supporting our hypothesis. Our findings highlight the importance for consideration of historical contingency in biodiversity research and further exploration of mechanisms operating across geological timescales. [ABSTRACT FROM AUTHOR]

Sea-level rise will affect coastal species worldwide, but models that aim to predict these effects are typically based on simple measures of sea level that do not capture its inherent complexity, especially variation over timescales shorter than 1 year. Coastal species might be most affected, however, by floods that exceed a critical threshold. The frequency and duration of such floods may be more important to population dynamics than mean measures of sea level. In particular, the potential for changes in the frequency and duration of flooding events to result in nonlinear population responses or biological thresholds merits further research, but may require that models incorporate greater resolution in sea level than is typically used. We created population simulations for a threatened songbird, the saltmarsh sparrow ( Ammodramus caudacutus), in a region where sea level is predictable with high accuracy and precision. We show that incorporating the timing of semidiurnal high tide events throughout the breeding season, including how this timing is affected by mean sea-level rise, predicts a reproductive threshold that is likely to cause a rapid demographic shift. This shift is likely to threaten the persistence of saltmarsh sparrows beyond 2060 and could cause extinction as soon as 2035. Neither extinction date nor the population trajectory was sensitive to the emissions scenarios underlying sea-level projections, as most of the population decline occurred before scenarios diverge. Our results suggest that the variation and complexity of climate-driven variables could be important for understanding the potential responses of coastal species to sea-level rise, especially for species that rely on coastal areas for reproduction. [ABSTRACT FROM AUTHOR]

In this paper, we use computational modeling to explore the effects of placing a probe within the active volume of an acoustic levitator. A two-step computational approach is used to visualize the levitation nodes using thousands of simulated particles driven by the acoustophoretic force and gravity. Our analysis shows that the size and position of a probe can strongly alter the shape, location, and intensity of existing levitation nodes. This has a direct impact on the ability to use acoustic levitation for drop suspension in the presence of disruptive probes. [ABSTRACT FROM AUTHOR]