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8 results on '"Feser, Manuel"'

1. Structural variation in the pangenome of wild and domesticated barley

Author

Jayakodi, Murukarthick, Lu, Qiongxian, Pidon, Hélène, Rabanus-Wallace, M. Timothy, Bayer, Micha, Lux, Thomas, Guo, Yu, Jaegle, Benjamin, Badea, Ana, Bekele, Wubishet, Brar, Gurcharn S., Braune, Katarzyna, Bunk, Boyke, Chalmers, Kenneth J., Chapman, Brett, Jørgensen, Morten Egevang, Feng, Jia-Wu, Feser, Manuel, Fiebig, Anne, Gundlach, Heidrun, Guo, Wenbin, Haberer, Georg, Hansson, Mats, Himmelbach, Axel, Hoffie, Iris, Hoffie, Robert E., Hu, Haifei, Isobe, Sachiko, König, Patrick, Kale, Sandip M., Kamal, Nadia, Keeble-Gagnère, Gabriel, Keller, Beat, Knauft, Manuela, Koppolu, Ravi, Krattinger, Simon G., Kumlehn, Jochen, Langridge, Peter, Li, Chengdao, Marone, Marina P., Maurer, Andreas, Mayer, Klaus F. X., Melzer, Michael, Muehlbauer, Gary J., Murozuka, Emiko, Padmarasu, Sudharsan, Perovic, Dragan, Pillen, Klaus, Pin, Pierre A., Pozniak, Curtis J., Ramsay, Luke, Pedas, Pai Rosager, Rutten, Twan, Sakuma, Shun, Sato, Kazuhiro, Schüler, Danuta, Schmutzer, Thomas, Scholz, Uwe, Schreiber, Miriam, Shirasawa, Kenta, Simpson, Craig, Skadhauge, Birgitte, Spannagl, Manuel, Steffenson, Brian J., Thomsen, Hanne C., Tibbits, Josquin F., Nielsen, Martin Toft Simmelsgaard, Trautewig, Corinna, Vequaud, Dominique, Voss, Cynthia, Wang, Penghao, Waugh, Robbie, Westcott, Sharon, Rasmussen, Magnus Wohlfahrt, Zhang, Runxuan, Zhang, Xiao-Qi, Wicker, Thomas, Dockter, Christoph, Mascher, Martin, and Stein, Nils

Published
2024
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2. On the way to plant data commons – a genotyping use case

Author

Feser Manuel, König Patrick, Fiebig Anne, Arend Daniel, Lange Matthias, and Scholz Uwe

Subjects
biodiversity, cloud computing, imputation, plants, research data commons, Biotechnology, TP248.13-248.65
Abstract

Over the last years it has been observed that the progress in data collection in life science has created increasing demand and opportunities for advanced bioinformatics. This includes data management as well as the individual data analysis and often covers the entire data life cycle. A variety of tools have been developed to store, share, or reuse the data produced in the different domains such as genotyping. Especially imputation, as a subfield of genotyping, requires good Research Data Management (RDM) strategies to enable use and re-use of genotypic data. To aim for sustainable software, it is necessary to develop tools and surrounding ecosystems, which are reusable and maintainable. Reusability in the context of streamlined tools can e.g. be achieved by standardizing the input and output of the different tools and adapting to open and broadly used file formats. By using such established file formats, the tools can also be connected with others, improving the overall interoperability of the software. Finally, it is important to build strong communities that maintain the tools by developing and contributing new features and maintenance updates. In this article, concepts for this will be presented for an imputation service.

Published
2022
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3. Adaptive diversification through structural variation in barley

Author

Jayakodi, Murukarthick, primary, Lu, Qiongxian, additional, Pidon, Helene, additional, Rabanus-Wallace, M. Timothy, additional, Bayer, Micha, additional, Lux, Thomas, additional, Guo, Yu, additional, Jaegle, Benjamin, additional, Badea, Ana, additional, Bekele, Wubishet, additional, Brar, Gurcharn, additional, Braune, Katarzyna, additional, Bunk, Boyke, additional, Chalmers, Kenneth, additional, Chapman, Brett, additional, Jorgensen, Morten Egevang, additional, Feng, Jia-Wu, additional, Feser, Manuel, additional, Fiebig, Anne, additional, Gundlach, Heidrun, additional, Guo, Wenbin, additional, Haberer, Georg, additional, Hansson, Mats, additional, Himmelbach, Axel, additional, Hoffie, Iris, additional, Hoffie, Robert, additional, Hu, Haifei, additional, Isobe, Sachiko, additional, Koenig, Patrick, additional, Kale, Sandip, additional, Kamal, Nadia, additional, Keeble-Gagnere, Gabriel, additional, Keller, Beat, additional, Knauft, Manuela, additional, Koppolu, Ravi, additional, Krattinger, Simon, additional, Kumlehn, Jochen, additional, Langridge, Peter, additional, Li, Chengdao, additional, Marone, Marina, additional, Maurer, Andreas, additional, Mayer, Klaus, additional, Melzer, Michael, additional, Muehlbauer, Gary, additional, Murozuka, Emiko, additional, Padmarasu, Sudharsan, additional, Perovic, Dragan, additional, Pillen, Klaus, additional, Pin, Pierre, additional, Pozniak, Curtis, additional, Ramsay, Luke, additional, Pedas, Pai Rosager, additional, Rutten, Twan, additional, Sakuma, Shun, additional, Sato, Kazuhiro, additional, Schueler, Danuta, additional, Schmutzer, Thomas, additional, Scholz, Uwe, additional, Schreiber, Miriam, additional, Shirasawa, Kenta, additional, Simpson, Craig, additional, Skadhauge, Birgitte, additional, Spannagl, Manuel, additional, Steffenson, Brian, additional, Thomsen, Hanne, additional, Tibbits, Josquin, additional, Nielsen, Martin Toft Simmelsgaard, additional, Trautewig, Corinna, additional, Vequaud, Dominique, additional, Voss, Cynthia, additional, Wang, Penghao, additional, Waugh, Robbie, additional, Westcott, Sharon, additional, Rasmussen, Magnus Wohlfahrt, additional, Zhang, Runxuan, additional, Zhang, Xiao-Qi, additional, Wicker, Thomas, additional, Dockter, Christoph, additional, Mascher, Martin, additional, and Stein, Nils, additional

Published
2024
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4. Bioschemas Resource Index for Chem and Plants

Author

Arend, Daniel, primary, Del Conte, Alessio, additional, Feser, Manuel, additional, Gadiya, Yojana, additional, Gaignard, Alban, additional, Castro, Leyla Jael, additional, Mičetić, Ivan, additional, Moretti, Sebastien, additional, Neumann, Steffen, additional, Rayya, Noura, additional, Tsueng, Ginger, additional, Willighagen, Egon, additional, and Wittig, Ulrike, additional

Published
2024
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5. BioHackEU23 report: Enabling continuous RDM using Annotated Research Contexts with RO-Crate profiles for ISA

Author

Beier, Sebastian, primary, Mühlhaus, Timo, additional, Pommier, Cyril, additional, Owen, Stuart, additional, Brilhaus, Dominik, additional, Weil, Heinrich Lukas, additional, Wetzels, Florian, additional, Chait, Gavin, additional, Arend, Daniel, additional, Feser, Manuel, additional, Doniparthi, Gajendra, additional, Bauer, Jonathan, additional, Gundersen, Sveinung, additional, and Vázquez, Pável, additional

Published
2024
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6. Improving Metadata Collection and Aggregation in Plant Phenotyping Experiments with MIAPPE Wizard and DataPLANT

Author

Arend, Daniel, primary, Beier, Sebastian, additional, Brilhaus, Dominik, additional, Dörpholz, Hannah, additional, Feser, Manuel, additional, Frey, Kevin, additional, König, Patrick, additional, Maus, Oliver, additional, Psaroudakis, Dennis, additional, Rodrigues, Cristina Martins, additional, Schrader, Andrea, additional, Senger, Elisa, additional, and Weil, Heinrich Lukas, additional

Published
2023
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7. TA4M4: Frameworks für Software Applikationen

Author

Feser, Manuel, Class-Thido Pfaff, Weber, Marc, Kostadinov, Ivaylo, and Scholz, Uwe

Subjects
NFDI4Biodiversity, AllHands4Biodiv
Abstract

In TA4M4 werden die Rahmenbedingungen für Applikationen gelegt. Erster Meilenstein ist ein Demonstrator für das Data Discovery Portal. Dieser baut auf der GFBio Suche auf, modernisiert das Backend der Suche und implementiert exemplarisch für den GfI Fischartenatlas eine Harvesting Infrastruktur.

Published
2022
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8. TA3M1: Beschreibung des technischen Ökosystems der Biodiversitätsforschung

Author

Feser, Manuel, Meister, Maria, and Scholz, Uwe

Subjects
NFDI4Biodiversity, AllHands4Biodiv
Abstract

In TA3M1 wurden Services anhand der Statusgespräche und des Projektantrags identifiziert und kategorisiert. Um eine einheitliche Sprache zu ermöglichen, wurde eine Terminologie erstellt. Für eine einheitliche und vollständige Erfassung der Services wurde ein Service Profile Template erstellt.

Published
2022
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