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The presence of defects in the graphenic layers deposited on metal surfaces modifies the nature of the interaction. Unsaturated carbon atoms, due to vacancies in the lattice, form strong organometallic bonds with surface metal atoms that highly enhance the binding energy between the two materials. We investigate by means of a wide set of dispersion-corrected density functional theory calculations how such strong chemical bonds affect both the electronic properties of these hybrid interfaces and the chemical reactivity with water, which is commonly present in the working conditions. We compare different metal substrates (Cu vs Pt) that present a different type of interaction with graphene and with defective graphene. This comparative analysis allows us to unravel the controlling factors of water reactivity, the role played by the carbon vacancies and by the confinement or "graphene cover effect". Water is capable of breaking the C-Cu bond by dissociating at the undercoordinated carbon atom of the vacancy, restoring the weak van der Waals type of interaction between the two materials that allows for an easy detachment of graphene from the metal, but the same is not true in the case of Pt, where C-Pt bonds are much stronger. These conclusions can be used to rationalize water reactivity at other defective graphene/metal interfaces.

Graphene/TiO2 nanocomposites are successfully applied in both photocatalysis and photovoltaics. The enhanced performances are attributed to their improved interfacial charged transfer and charge separation, which reduce the recombination rate of the photoexcited charge carriers. Here, it is shown that only density functional methods which provide corrections for the spurious self-interaction and for the van der Waals forces can correctly describe the electronic structure, the adhesion energy, and the atomic equilibrium distances. It is also proven that residual O atoms at the interface largely enhances the binding energy and causes further electronic states hybridization between G and TiO2, which is expected to favor interfacial electron transfers. Finally, evidence that electrons are preferentially trapped at subsurface layers of TiO2, while holes are preferentially delocalized on the G sheet, is provided. This opposite tendency is proposed to be at the basis of the reduced recombination leading to the observed improved outcomes in photocatalytic and photovoltaic applications. Separation of photoexcited e-/h+ pairs at the interface between graphene and (101) anatase TiO2 surface is investigated through dispersion corrected hybrid density functional calculations. Electrons are preferentially trapped at second layer Ti3+ sites while holes tend to fully delocalize in the carbon layer with relevant consequences for photocatalysis and photovoltaics

On-surface synthesis of thin organic and organometallic films in a bottom-up fashion has become a promising approach for the development of new nanotechnologies. In this work we studied 5,11-dibromotetracene (C18H10Br2) as a prototypical case of rodlike polyaromatic molecules functionalized with two bromine atoms on the sides. The adsorption and temperature-stimulated transformations of dibromotetracene assemblies on Ag(110) have been investigated by a combination of synchrotron radiation X-ray photoemission spectroscopy (XPS), near-edge X-ray absorption spectroscopy (NEXAFS), scanning tunneling microscopy (STM), and density functional theory (DFT) calculations. Upon the contact with the Ag substrate, the Br-C bonds are promptly cleaved at room temperature, and Ag-coordinated protopolymers are formed along the [001] substrate direction. The organometallic dimers and trimers remain on the surface up to 523 K. The stabilization of the protopolymers is driven by the substrate anisotropy and weak interactions with nearby Br atoms. The short oligomers formed at elevated temperatures are weakly bounded to the substrate and desorb before covalent structures can be formed.

By a combination of scanning tunneling microscopy, X-ray spectroscopic techniques and density functional theory calculations, we prove the formation of extended patterns of parallel, graphene nanoribbons with alternate zig-zag and armchair edges and selected width by surface-assisted Ullmann coupling polymerization and dehydrogenation of 1,6-dibromopyrene (C16H8Br2). Besides the relevance of these nanostructures for their possible application in nanodevices, we demonstrate the peculiarity of halogenated pyrene derivatives for the formation of nanoribbons, in particular on Ag(110). These results open the possibility of tuning the shape and dimension of nanoribbons (and hence the correlated electronic properties) by choosing suitably tailored or on-purpose designed molecular precursors.

In this work, we present an overview on how density functional theory calculations can be used to design novel electrocatalytic materials for fuel cells. In particular, we focus the attention on non-metal doped graphene systems, which were reported to present excellent performances as electrocatalysts for the oxygen reduction reaction (ORR) at the cathodic electrode of fuel cells and are, thus, considered promising substitutes of platinum or platinum alloys electrodes. The methodology, originally proposed by Nørskov et al. (J. Phys. Chem. B 2004, 108, 17886) for electrochemical processes at metal electrodes, is revisited and applied specifically to doped graphene. Finite molecular models of graphene are found to perform as well as periodic models for localized properties or reactions. Therefore, the sophisticated molecular quantum mechanics methodologies can be safely used to compute reliable Gibbs free energies of reaction in an aqueous environment for the various steps of reduction (at the cathode) or of oxidation (at the anode). Details of the reaction mechanisms and accurate cell onset- or over-potentials can be derived from the Gibbs free energy diagrams. The latter are computational quantities which can be directly compared to experimentally obtained cell overpotentials. Modeling electrocatalysis at fuel cells is, thus, an extremely powerful and convenient tool to improve our understanding of how fuel cells work and to design novel potentially active electrocatalytic materials. In this work, we present two specific applications of B-doped graphene, as electrocatalysts for the ORR at a half-cell cathode and for the methanol oxidation reaction (MOR) at a half-cell anode.

The "catalysis under cover" involves chemical processes which take place in the confined zone between a 2D material, such as graphene, h-BN, or MoS2, and the surface of an underlying support, such as a metal or a semiconducting oxide. The hybrid interface between graphene and anatase TiO2 is extremely important for photocatalytic and catalytic applications because of the excellent and complementary properties of the two materials. We investigate and discuss the reactivity of O2 and H2O on top and at the interface of this hybrid system by means of a wide set of dispersion-corrected hybrid density functional calculations. Both pure and boron- or nitrogen-doped graphene are interfaced with the most stable (101) anatase surface of TiO2 in order to improve the chemical activity of the C-layer. Especially in the case of boron, an enhanced reactivity toward O2 dissociation is observed as a result of both the contribution of the dopant and of the confinement effect in the bidimensional area between the two surfaces. Extremely stable dissociation products are observed where the boron atom bridges the two systems by forming very stable B - O covalent bonds. Interestingly, the B defect in graphene could also act as the transfer channel of oxygen atoms from the top side across the C atomic layer into the G/TiO2 interface. On the contrary, the same conditions are not found to favor water dissociation, proving that the "catalysis under cover" is not a general effect, but rather highly depends on the interfacing material properties, on the presence of defects and impurities and on the specific reaction involved.

Graphene inertness towards chemical reactivity can be considered as an accepted postulate by the research community. This limit has been recently overcome by chemically and physically modifying graphene through non-metal doping or interfacing with acceptor/donor materials (metals or semiconductors). As a result, outstanding performances as catalytic, electrocatalytic, and photocatalytic material have been observed. In this critical Review we report computational work performed, by our group, on the reactivity of free-standing, metal- and semiconductor-supported B-doped graphene towards oxygen, which is at the basis of extremely important energy-related chemical processes, such as the oxygen reduction reaction. It appears that a combination of doping and interfacing approaches for the activation of graphene can open unconventional and unprecedented reaction paths, thus boosting the potential of modified graphene in many chemical applications. Boron found to matter: Advanced density functional studies on the enhancement of oxygen reactivity through non-metal doping and/or interfacing graphene with metal (copper) and semiconductor (TiO2) surfaces are reviewed. Oxidized boron species are formed in the graphene sheets. These are bound to the underlying support through direct covalent bonds, which enhances the intimate connection between materials with different chemical and physical properties, thus creating an interactive hybrid interface.

Nanoparticles of very small size (below 10 nm) of TiO2 material are nowadays the functional building blocks of many developing technological applications. Nano is clearly different from bulk or extended systems as regards surface area, molecular binding properties, charge separation efficiency, electron/hole transport, photochemical conversion properties, etc. In this work, we investigate the life path of energy (excitons) and charge (electrons and holes) carriers in anatase TiO2 nanoparticles of different size (2–3 nm) and shape (faceted vs spherical), by means of a wide set of hybrid density functional theory calculations. The attention is focused on the exciton/charge carriers formation, separation, recombination, self-trapping processes, which are analyzed in terms of structural deformations, energy gain or cost, charge localization/delocalization and electronic transitions involved. The computational models are corroborated by an extensive comparison with available experimental data based on photoluminescence measurements, electron paramagnetic resonance and transient absorption spectroscopies. Peculiar differences are observed for spherical nanoparticles with respect to faceted ones because of the higher disorder and larger diversity of coordination sites present on the surface. For example, charge delocalization on several lattice sites is more competitive with self-trapping processes in faceted than in spherical nanoparticles. This relates to the fact that selective compression or elongation of Ti-O bonds play a key role in determining the effectiveness of trapping sites, with spherical nanoparticles being more flexible. Moreover, hydroxyl groups on surface five-fold coordinated Ti sites are also found to be good hole trapping sites.

Graphene inertness towards chemical reactivity can be considered as an accepted postulate by the research community. This limit has been recently overcome by chemically and physically modifying graphene through non-metal doping or interfacing with acceptor/donor materials (metals or semiconductors). As a result, outstanding performances as catalytic, electrocatalytic, and photocatalytic material have been observed. In this critical Review we report computational work performed, by our group, on the reactivity of free-standing, metal- and semiconductor-supported B-doped graphene towards oxygen, which is at the basis of extremely important energy-related chemical processes, such as the oxygen reduction reaction. It appears that a combination of doping and interfacing approaches for the activation of graphene can open unconventional and unprecedented reaction paths, thus boosting the potential of modified graphene in many chemical applications.

The surface-assisted synthesis of gold-organometallic hybrids on the Au(111) surface both by thermo- and light-initiated dehalogenation of bromo-substituted tetracene is reported. Combined X-ray photoemission (XPS) and scanning tunneling microscopy (STM) data reveal a significant increase of the surface order when mild reaction conditions are combined with 405 nm light irradiation.

Dibromotetracene molecules are deposited on the Cu(110) surface at room temperature. The complex evolution of this system has been monitored at different temperatures (i.e., 298, 523, 673, and 723 K) by means of a variety of complementary techniques that range from STM and temperature-programmed desorption (TPD) to high-resolution X-ray spectroscopy (XPS) and near-edge X-ray absorption fine structure spectroscopy (NEXAFS). State-of-the-art density-functional calculations were used to determine the chemical processes that take place on the surface. After deposition at room temperature, the organic molecules are transformed into organometallic monomers through debromination and carbon-radical binding to copper adatoms. Organometallic dimers, trimers, or small oligomers, which present copper-bridged molecules, are formed by increasing the temperature. Surprisingly, further heating to 673 K causes the formation of elongated chains along the Cu(110) close-packed rows as a consequence of radical-site migration to the thermodynamically more stable molecule heads. Finally, massive dehydrogenation occurs at the highest temperature followed by ring condensation to nanographenic patches. This study is a paradigmatic example of how intermolecular coupling can be modulated by the stepwise control of a simple parameter, such as temperature, through a sequence of domino reactions.

Singly and multiply doped graphene oxide quantum dots have been synthesized by a simple electrochemical method using water as solvent. The obtained materials have been characterized by photoemission spectroscopy and scanning tunneling microscopy, in order to get a detailed picture of their chemical and structural properties. The electrochemical activity toward the oxygen reduction reaction of the doped graphene oxide quantum dots has been investigated by cyclic voltammetry and rotating disk electrode measurements, showing a clear decrease of the overpotential as a function of the dopant according to the sequence: N ∼ B > B,N. Moreover, assisted by density functional calculations of the Gibbs free energy associated with every electron transfer, we demonstrate that the selectivity of the reaction is controlled by the oxidation states of the dopants: as-prepared graphene oxide quantum dots follow a two-electron reduction path that leads to the formation of hydrogen peroxide, whereas after the reduction with NaBH4, the same materials favor a four-electron reduction of oxygen to water. (Chemical Equation Presented).

The electronic properties of free-standing and Cu-supported pristine and boron-doped, nitrogen-doped, and codoped graphene have been studied by means of density functional theory (DFT) with the vdW-DF2C09x functional. The effects of substitutional chemical doping, metal support, lattice parameter strain, and their eventual interplay have been investigated. We find that only boron-doped graphene strongly interacts with the copper substrate, due to chemical bonds between the boron atom and the underlying metal. The binding energy and charge transfer from Cu are also highly enhanced compared to both pristine and nitrogen-doped supported graphene. The BN codoped system behaves similarly to pristine graphene with a weakly physisorbed state and a small charge transfer from Cu. However, the presence of the nonmetal dopants makes the codoped sheet extremely tunable for redox purposes, with the boron site acting as an electron acceptor and the nitrogen site as an electron donor.

Molecular oxygen reactivity on pristine and B-doped graphene over crystalline Cu(111) surface has been investigated by means of density functional theory (DFT) calculations and the periodic supercell approach. Results obtained for the supported undoped and doped systems have been compared to establish the effect of B-doping on the reactivity and on the interface adhesion, which are found to be both highly boosted. Additionally, results obtained for free standing pristine and B-doped graphene have been compared to those obtained for the metal supported counterparts in order to determine how the reactivity is affected by the presence of the metal substrate. Cu is found to be an n-type donor which enhances the reactivity of pristine graphene. However, in the case of B-doped graphene, the n-type doping by the metal surpasses the p-type doping by boron causing a reduction in the reactivity. Finally, the possibility that the oxygen could dissociate at the graphene/metal interface is investigated. Some of the reaction products are found to be more stable than those obtained with oxygen dissociating on the top side of the graphene sheet. This provides some significant insight into the confinement effect on the surface chemistry of molecules underneath which is currently a hot topic in the field.

TiO2 nanoparticles are fundamental building blocks of many TiO2-based technologies. However, most of the computational studies simulate either bulk or surface titania. Structural and electronic properties of nanoparticles are expected to differ much from extended systems. Moreover, nanoparticles of different size and shape may also present peculiar features. In this study we compare nanocrystals and nanospheres of various sizes (up to a diameter of 3 nm) in order to highlight analogies and differences. In particular, we focus the attention on the surface-to-bulk sites ratio, the surface sites coordination distribution, the atomic distortions or curvature, and the surface energies from the structural point of view. Regarding the electronic properties, we investigate the difference between Kohn-Sham and fundamental gaps of these finite-sized systems, the frontiers orbitals space distribution, ionization potentials, and electron affinities, and finally, the densities of states projected on the various coordination sites present in the nanoparticles. This detailed analysis proves that faceted and spherical nanoparticles present different structural and electronic properties, which make each of them better suited for different uses and applications.

Boron-doped graphene was reported to be the best non-metal doped graphene electrocatalyst for the oxygen reduction reaction (ORR) working at an onset potential of 0.035 V (Jiao et al., 2014). In the present DFT study, intermediates and transition structures along the possible reaction pathways are determined. Both Langmuir-Hinschelwood and Eley-Rideal mechanisms are discussed. Molecular oxygen binds the positively charged B atom and forms an open shell end-on dioxygen intermediate. The associative path is favored with respect to the dissociative one. The free energy diagrams along the four-reduction steps are investigated with the methodology by Nørskov and co. (2004) in both acidic and alkaline conditions. The pH effect on the stability of the intermediates of reduction is analyzed in terms of the Pourbaix diagram. At pH = 14, we compute an onset potential value for the electrochemical ORR of U = 0.05 V, which compares very well with the experimental value in alkaline conditions.

Graphene (G) reactivity toward oxygen is very poor, which limits its use as electrode for the oxygen reduction reaction (ORR). Contrarily, boron-doped graphene was found to be an excellent catalyst for the ORR. Through a density functional study, comparing molecular and periodic approaches and different functionals (B3LYP vs PBE), we show how substitutional boron in the carbon sheet can boost the reactivity with oxygen leading to the formation of bulk borates covalently bound to graphene (BO3-G) in oxygen-rich conditions. These species are highly interesting intermediates for the Oî - O breaking step in the reduction process of O2 to form H2O as they are energetically stable. © 2013 American Chemical Society.

Electronic structure calculations have become an indispensable tool in many areas of materials science and quantum chemistry. Even though the Kohn-Sham formulation of the density-functional theory (DFT) simplifies the many-body problem significantly, one is still confronted with several numerical challenges. In this article we present the projector augmented-wave (PAW) method as implemented in the GPAW program package (https://wiki.fysik.dtu.dk/gpaw) using a uniform real-space grid representation of the electronic wavefunctions. Compared to more traditional plane wave or localized basis set approaches, real-space grids offer several advantages, most notably good computational scalability and systematic convergence properties. However, as a unique feature GPAW also facilitates a localized atomic-orbital basis set in addition to the grid. The efficient atomic basis set is complementary to the more accurate grid, and the possibility to seamlessly switch between the two representations provides great flexibility. While DFT allows one to study ground state properties, time-dependent density-functional theory (TDDFT) provides access to the excited states. We have implemented the two common formulations of TDDFT, namely the linear-response and the time propagation schemes. Electron transport calculations under finite-bias conditions can be performed with GPAW using non-equilibrium Green functions and the localized basis set. In addition to the basic features of the real-space PAW method, we also describe the implementation of selected exchange-correlation functionals, parallelization schemes, Delta SCF-method, x-ray absorption spectra, and maximally localized Wannier orbitals., authorCount :36

We present an implementation of the polarizable continuum model in its integral equation formulation for the calculation of the magnetizabilities of solvated molecules. The gauge-origin independence of the calculated magnetizabilities and the fast basis set convergence are ensured through the use of London atomic orbitals. Our implementation can use Hartree-Fock and multiconfigurational self-consistent-field (MCSCF) wave functions as well as density-functional theory including hybrid functionals such as B3LYP. We present the results of dielectric continuum effects on water and pyridine using MCSCF wave functions, as well as dielectric medium effects on the magnetizability of the aromatic amino acids as a model for how a surrounding protein environment affects the magnetizability of these molecules. It is demonstrated that the dielectric medium effects on the magnetizability anisotropies of the aromatic amino acids may be substantial, being as large as 25% in the case of tyrosine., QC 20110822

We present the first implementation of the quadratic response function for multiconfigurational self-consistent-field wave functions of solvated molecules described by a polarizable continuum model employing a molecule-shaped cavity. We apply the methodology to the first hyperpolarizability beta and, in particular, the second-harmonic generation process for a series of conjugated push-pull oligomers, as well as for para-nitroaniline. The effect of solvation on the dispersion of the hyperpolarizability and the change in the hyperpolarizability for increasing chain length of the oligomers in vacuum and in solution is considered. The effect of a correlated description is analyzed by comparing the Hartree-Fock hyperpolarizabilities to the multiconfigurational self-consistent-field hyperpolarizabilities. The effect of geometry relaxation in the solvent on the properties of the solvated molecules are also investigated., QC 20100525