657 results on '"Ferrell RE"'
Search Results
2. Clinical diversity and chromosomal localization of X-linked cone dystrophy (COD1)
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Gorin, MB, Hong, HK, and Ferrell, RE
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- 2021
3. Differential serotonin transport is linked to the rh5-HTTLPR in peripheral blood cells.
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Singh, YS, Altieri, SC, Gilman, TL, Michael, HM, Tomlinson, ID, Rosenthal, SJ, Swain, GM, Murphey-Corb, MA, Ferrell, RE, and Andrews, AM
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Blood Cells ,Animals ,Macaca mulatta ,Humans ,RNA ,Messenger ,Species Specificity ,Gene Expression Regulation ,Genotype ,Polymorphism ,Genetic ,Polymorphism ,Single Nucleotide ,Alleles ,Female ,Male ,Serotonin Plasma Membrane Transport Proteins ,INDEL Mutation ,Promoter Regions ,Genetic ,Gene-Environment Interaction ,anxiety ,biomarker ,chronoamperometry ,depression ,lymphocytes ,SERT ,Polymorphism ,Genetic ,Single Nucleotide ,Promoter Regions ,RNA ,Messenger ,Clinical Sciences ,Public Health and Health Services ,Psychology - Abstract
The human serotonin transporter (SERT) gene possesses a 43-base pair (bp) insertion-deletion promoter polymorphism, the h5-HTTLPR. Genotype at this locus correlates with variation in anxiety-related personality traits and risk for major depressive disorder in many studies. Yet, the complex effects of the h5-HTTLPR, in combination with closely associated single-nucleotide polymorphisms (SNPs), continue to be debated. Moreover, although SERT is of high clinical significance, transporter function in vivo remains difficult to assess. Rhesus express a promoter polymorphism related to the h5-HTTLPR. The rh5-HTTLPR has been linked to differences in stress-related behavior and cognitive flexibility, although allelic variations in serotonin uptake have not been investigated. We studied the serotonin system as it relates to the 5-HTTLPR in rhesus peripheral blood cells. Sequencing of the rh5-HTTLPR revealed a 23-bp insertion, which is somewhat longer than originally reported. Consistent with previous reports, no SNPs in the rh5-HTTLPR and surrounding genomic regions were detected in the individuals studied. Reductions in serotonin uptake rates, cell surface SERT binding, and 5-hydroxyindoleacetic acid/serotonin ratios, but not SERT mRNA levels, were associated with the rh5-HTTLPR short allele. Thus, serotonin uptake rates are differentiable with respect to the 5-HTTLPR in an easily accessible native peripheral tissue. In light of these findings, we foresee that primary blood cells, in combination with high sensitivity functional measurements enabled by chronoamperometry, will be important for investigating alterations in serotonin uptake associated with genetic variability and antidepressant responsiveness in humans.
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- 2012
4. Linkage analysis of X-linked cone-rod dystrophy: localization to Xp11.4 and definition of a locus distinct from RP2 and RP3.
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Gorin, MB, Seymour, AB, Dash-Modi, A, O'Connell, JR, Shaffer-Gordon, M, Mah, TS, Stefko, ST, Nagaraja, R, Brown, J, Kimura, AE, and Ferrell, RE
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- 1998
5. A peripherin/retinal degeneration slow mutation (Pro-210-Arg) associated with macular and peripheral retinal degeneration.
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Gorin, MB, Jackson, KE, Ferrell, RE, Sheffield, VC, Jacobson, SG, Gass, JD, Mitchell, E, and Stone, EM
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Fundus Oculi ,Humans ,Retinal Degeneration ,Macular Degeneration ,Chromosome Deletion ,Intermediate Filament Proteins ,Arginine ,Proline ,Eye Proteins ,Membrane Glycoproteins ,Nerve Tissue Proteins ,Fluorescein Angiography ,Electrophoresis ,Polyacrylamide Gel ,Polymerase Chain Reaction ,Pedigree ,DNA Mutational Analysis ,Amino Acid Sequence ,Base Sequence ,Visual Fields ,Phenotype ,Point Mutation ,Molecular Sequence Data ,Adolescent ,Adult ,Aged ,Middle Aged ,Female ,Male ,Peripherins ,Electrophoresis ,Polyacrylamide Gel ,Ophthalmology & Optometry ,Clinical Sciences ,Opthalmology and Optometry ,Public Health and Health Services - Abstract
BackgroundMutations in the peripherin/retinal degeneration slow (RDS) gene have been identified in patients with retinitis pigmentosa and pattern macular dystrophy. The authors initially examined a large family affected with both peripheral and macular degeneration, inherited as an autosomal dominant trait. Screening for peripherin/RDS mutations identified a previously unreported nucleotide alteration in all of the affected individuals. Two additional families later were found to have this same mutation.MethodsDNA samples from the members of three unrelated families were screened for peripherin/RDS mutations by denaturing gradient gel electrophoresis of the polymerase chain reaction-amplified peripherin/RDS coding sequences. The sequence change that was detected was further characterized by DNA sequencing. Family members were examined and evaluated with psychophysical and electrophysiologic methods.ResultsA proline to arginine mutation in codon 210 of peripherin/RDS was found in all clinically affected individuals. Macular changes included extensive geographic atrophy, pigment epithelial changes, and/or drusen. The proline to arginine mutation was not found among 100 healthy individuals, making it unlikely to be a nondisease-causing polymorphism.ConclusionsThe authors identified a novel peripherin/RDS gene mutation associated with autosomal dominant retinal degeneration in patients from three different families. The largest family showed a broad variability in the expressivity of the mutation. The overlap of clinical features with those of age-related maculopathy highlights the need to consider photoreceptor-specific genes as potential factors in the etiology of the latter condition.
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- 1995
6. Clinical diversity and chromosomal localization of X-linked cone dystrophy (COD1)
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Gorin, MB, Gorin, MB, Hong, HK, Ferrell, RE, Gorin, MB, Gorin, MB, Hong, HK, and Ferrell, RE
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- 2022
7. Die SPINK1 N34S Mutation ist nicht mit Typ 2 Diabetes Mellitus in den USA assoziiert
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Schneider, A, primary, Lawrence, EC, additional, Barmada, MM, additional, Norris, JM, additional, Hamman, RF, additional, Marshall, JA, additional, Ferrell, RE, additional, and Whitcomb, DC, additional
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- 2015
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8. Genome-wide association study identifies a sequence variant within the DAB2IP gene conferring susceptibility to abdominal aortic aneurysm
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Gretarsdottir, S, Baas, AF, Thorleifsson, G, Holm, H, den Heijer, M, de Vries, JPPM, Kranendonk, SE, Zeebregts, CJAM, van Sterkenburg, SM, Geelkerken, RH, van Rij, AM, Williams, MJA, Boll, APM, Kostic, JP, Jonasdottir, A, Walters, GB, Masson, G, Sulem, P, Saemundsdottir, J, Mouy, M, Magnusson, KP, Tromp, G, Elmore, JR, Sakalihasan, N, Limet, R, Defraigne, JO, Ferrell, RE, Ronkainen, A, Ruigrok, YM, Wijmenga, C, Grobbee, DE, Shah, SH, Granger, CB, Quyyumi, AA, Vaccarino, V, Patel, RS, Zafari, AM, Levey, AI, Austin, H, Girelli, D, Pignatti, PF, Olivieri, O, Martinelli, N, Malerba, G, Trabetti, E, Becker, LC, Becker, DM, Reilly, MP, Rader, DJ, Mueller, T, Dieplinger, B, Haltmayer, M, Urbonavicius, S, Lindblad, B, Gottsater, A, Gaetani, E, Pola, R, Wells, P, Rodger, M, Forgie, M, Langlois, N, Corral, J, Vicente, V, Fontcuberta, J, Espana, F, Grarup, N, Jorgensen, T, Witte, DR, Hansen, T, Pedersen, O, Aben, KK, de Graaf, J, Holewijn, S, Folkersen, L, Franco-Cereceda, A, Eriksson, P, Collier, DA, Stefansson, H, Steinthorsdottir, V, Rafnar, T, Valdimarsson, EM, Magnadottir, HB, Sveinbjornsdottir, S, Olafsson, I, Magnusson, MK, Palmason, R, Haraldsdottir, V, Andersen, K, Onundarson, PT, Thorgeirsson, G, Kiemeney, LA, Powell, JT, Carey, DJ, Kuivaniemi, H, Lindholt, JS, Jones, GT, Kong, A, Blankensteijn, JD, Matthiasson, SE, Thorsteinsdottir, U, and Stefansson, K
- Abstract
We performed a genome-wide association study on 1,292 individuals with abdominal aortic aneurysms (AAAs) and 30,503 controls from Iceland and The Netherlands, with a follow-up of top markers in up to 3,267 individuals with AAAs and 7,451 controls. The A allele of rs7025486 on 9q33 was found to associate with AAA, with an odds ratio (OR) of 1.21 and P = 4.6 x 10(-10). In tests for association with other vascular diseases, we found that rs7025486[A] is associated with early onset myocardial infarction (OR = 1.18, P = 3.1 x 10(-5)), peripheral arterial disease (OR = 1.14, P = 3.9 x 10(-5)) and pulmonary embolism (OR = 1.20, P = 0.00030), but not with intracranial aneurysm or ischemic stroke. No association was observed between rs7025486[A] and common risk factors for arterial and venous diseases-that is, smoking, lipid levels, obesity, type 2 diabetes and hypertension. Rs7025486 is located within DAB2IP, which encodes an inhibitor of cell growth and survival.
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- 2010
9. DRD4 polymorphism moderates the effect of alcohol consumption on social bonding
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Creswell, KG, Sayette, MA, Manuck, SB, Ferrell, RE, Hill, SY, Dimoff, JD, Creswell, KG, Sayette, MA, Manuck, SB, Ferrell, RE, Hill, SY, and Dimoff, JD
- Abstract
Development of interpersonal relationships is a fundamental human motivation, and behaviors facilitating social bonding are prized. Some individuals experience enhanced reward from alcohol in social contexts and may be at heightened risk for developing and maintaining problematic drinking. We employed a 3 (group beverage condition) ×2 (genotype) design (N = 422) to test the moderating influence of the dopamine D4 receptor gene (DRD4 VNTR) polymorphism on the effects of alcohol on social bonding. A significant gene x environment interaction showed that carriers of at least one copy of the 7-repeat allele reported higher social bonding in the alcohol, relative to placebo or control conditions, whereas alcohol did not affect ratings of 7-absent allele carriers. Carriers of the 7-repeat allele were especially sensitive to alcohol's effects on social bonding. These data converge with other recent gene-environment interaction findings implicating the DRD4 polymorphism in the development of alcohol use disorders, and results suggest a specific pathway by which social factors may increase risk for problematic drinking among 7-repeat carriers. More generally, our findings highlight the potential utility of employing transdisciplinary methods that integrate genetic methodologies, social psychology, and addiction theory to improve theories of alcohol use and abuse. © 2012 Creswell et al.
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- 2012
10. Melanopsin gene variations interact with season to predict sleep onset and chronotype
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Roecklein, KA, Wong, PM, Franzen, PL, Hasler, BP, Wood-Vasey, WM, Nimgaonkar, VL, Miller, MA, Kepreos, KM, Ferrell, RE, Manuck, SB, Roecklein, KA, Wong, PM, Franzen, PL, Hasler, BP, Wood-Vasey, WM, Nimgaonkar, VL, Miller, MA, Kepreos, KM, Ferrell, RE, and Manuck, SB
- Abstract
The human melanopsin gene has been reported to mediate risk for seasonal affective disorder (SAD), which is hypothesized to be caused by decreased photic input during winter when light levels fall below threshold, resulting in differences in circadian phase andor sleep. However, it is unclear if melanopsin increases risk of SAD by causing differences in sleep or circadian phase, or if those differences are symptoms of the mood disorder. To determine if melanopsin sequence variations are associated with differences in sleep-wake behavior among those not suffering from a mood disorder, the authors tested associations between melanopsin gene polymorphisms and self-reported sleep timing (sleep onset and wake time) in a community sample (N234) of non-Hispanic Caucasian participants (age 3054 yrs) with no history of psychological, neurological, or sleep disorders. The authors also tested the effect of melanopsin variations on differences in preferred sleep and activity timing (i.e., chronotype), which may reflect differences in circadian phase, sleep homeostasis, or both. Daylength on the day of assessment was measured and included in analyses. DNA samples were genotyped for melanopsin gene polymorphisms using fluorescence polarization. P10L genotype interacted with daylength to predict self-reported sleep onset (interaction p<.05). Specifically, sleep onset among those with the TT genotype was later in the day when individuals were assessed on longer days and earlier in the day on shorter days, whereas individuals in the other genotype groups (i.e., CC and CT) did not show this interaction effect. P10L genotype also interacted in an analogous way with daylength to predict self-reported morningness (interaction p<.05). These results suggest that the P10L TT genotype interacts with daylength to predispose individuals to vary in sleep onset and chronotype as a function of daylength, whereas other genotypes at P10L do not seem to have effects that vary by daylength. A better
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- 2012
11. Analysis of positional candidate genes in the AAA1 susceptibility locus for abdominal aortic aneurysms on chromosome 19
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Lillvis, JH, Kyo, Y, Tromp, G, Lenk, GM, Li, M, Lu, Q, Igo, RP, Sakalihasan, N, Ferrell, RE, Schworer, CM, Gatalica, Z, Land, S, Kuivaniemi, H, Lillvis, JH, Kyo, Y, Tromp, G, Lenk, GM, Li, M, Lu, Q, Igo, RP, Sakalihasan, N, Ferrell, RE, Schworer, CM, Gatalica, Z, Land, S, and Kuivaniemi, H
- Abstract
Background: Abdominal aortic aneurysm (AAA) is a complex disorder with multiple genetic risk factors. Using affected relative pair linkage analysis, we previously identified an AAA susceptibility locus on chromosome 19q13. This locus has been designated as the AAA1 susceptibility locus in the Online Mendelian Inheritance in Man (OMIM) database.Methods: Nine candidate genes were selected from the AAA1 locus based on their function, as well as mRNA expression levels in the aorta. A sample of 394 cases and 419 controls was genotyped for 41 SNPs located in or around the selected nine candidate genes using the Illumina GoldenGate platform. Single marker and haplotype analyses were performed. Three genes (CEBPG, PEPD and CD22) were selected for DNA sequencing based on the association study results, and exonic regions were analyzed. Immunohistochemical staining of aortic tissue sections from AAA and control individuals was carried out for the CD22 and PEPD proteins with specific antibodies.Results: Several SNPs were nominally associated with AAA (p < 0.05). The SNPs with most significant p-values were located near the CCAAT enhancer binding protein (CEBPG), peptidase D (PEPD), and CD22. Haplotype analysis found a nominally associated 5-SNP haplotype in the CEBPG/PEPD locus, as well as a nominally associated 2-SNP haplotype in the CD22 locus. DNA sequencing of the coding regions revealed no variation in CEBPG. Seven sequence variants were identified in PEPD, including three not present in the NCBI SNP (dbSNP) database. Sequencing of all 14 exons of CD22 identified 20 sequence variants, five of which were in the coding region and six were in the 3'-untranslated region. Five variants were not present in dbSNP. Immunohistochemical staining for CD22 revealed protein expression in lymphocytes present in the aneurysmal aortic wall only and no detectable expression in control aorta. PEPD protein was expressed in fibroblasts and myofibroblasts in the media-adventitia border in both
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- 2011
12. Evaluation of 15 functional candidate genes for association with chronic otitis media with effusion and/or recurrent otitis media (COME/ROM)
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Sale, MM, Chen, WM, Weeks, DE, Mychaleckyj, JC, Hou, X, Marion, M, Segade, F, Casselbrant, ML, Mandel, EM, Ferrell, RE, Rich, SS, Daly, KA, Sale, MM, Chen, WM, Weeks, DE, Mychaleckyj, JC, Hou, X, Marion, M, Segade, F, Casselbrant, ML, Mandel, EM, Ferrell, RE, Rich, SS, and Daly, KA
- Abstract
DNA sequence variants in genes involved in the innate immune response and secondary response to infection may confer susceptibility to chronic otitis media with effusion and/or recurrent otitis media (COME/ROM). We evaluated single nucleotide polymorphisms (SNPs) in 15 functional candidate genes. A total of 99 SNPs were successfully genotyped on the Sequenom platform in 142 families (618 subjects) from the Minnesota COME/ROM Family Study. Data were analyzed for association with COME/ROM using the Generalized Disequilibrium Test (GDT). Sex and age at exam were adjusted as covariates, relatedness was accounted for, and genotype differences from all phenotypically discordant relative pairs were utilized to measure the evidence of association between COME/ROM and each SNP. SNP rs2735733 in the region of the mucin 5, subtypes A/C gene (MUC5AC) exhibited nominal evidence for association with COME/ROM (P = 0.002). Two additional SNPs from this region had P values<0.05. Other variants exhibiting associations with COME/ROM at P<0.05 included the SCN1B SNP rs8100085 (P = 0.013), SFTPD SNP rs1051246 (P = 0.039) and TLR4 SNP rs2770146 (P = 0.038). However, none of these associations replicated in an independent sample of COME/ROM families. The candidate gene variants examined do not appear to make a major contribution to COME/ROM susceptibility, despite a priori evidence from functional or animal model studies for a role in COME/ROM pathology. © 2011 Sale et al.
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- 2011
13. Genome-wide linkage scan to identify loci associated with type 2 diabetes and blood lipid phenotypes in the sikh diabetes study
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Sanghera, DK, Been, LF, Ralhan, S, Wander, GS, Mehra, NK, Singh, JR, Ferrell, RE, Kamboh, MI, Aston, CE, Sanghera, DK, Been, LF, Ralhan, S, Wander, GS, Mehra, NK, Singh, JR, Ferrell, RE, Kamboh, MI, and Aston, CE
- Abstract
In this investigation, we have carried out an autosomal genome-wide linkage analysis to map genes associated with type 2 diabetes (T2D) and five quantitative traits of blood lipids including total cholesterol, high-density lipoprotein (HDL) cholesterol, low-density lipoprotein (LDL) cholesterol, very low-density lipoprotein (VLDL) cholesterol, and triglycerides in a unique family-based cohort from the Sikh Diabetes Study (SDS). A total of 870 individuals (526 male/344 female) from 321 families were successfully genotyped using 398 polymorphic microsatellite markers with an average spacing of 9.26 cM on the autosomes. Results of non-parametric multipoint linkage analysis using Sall statistics (implemented in Merlin) did not reveal any chromosomal region to be significantly associated with T2D in this Sikh cohort. However, linkage analysis for lipid traits using QTL-ALL analysis revealed promising linkage signals with p≤0.005 for total cholesterol, LDL cholesterol, and HDL cholesterol at chromosomes 5p15, 9q21, 10p11, 10q21, and 22q13. The most significant signal (p = 0.0011) occurred at 10q21.2 for HDL cholesterol. We also observed linkage signals for total cholesterol at 22q13.32 (p = 0.0016) and 5p15.33 (p = 0.0031) and for LDL cholesterol at 10p11.23 (p = 0.0045). Interestingly, some of linkage regions identified in this Sikh population coincide with plausible candidate genes reported in recent genome-wide association and meta-analysis studies for lipid traits. Our study provides the first evidence of linkage for loci associated with quantitative lipid traits at four chromosomal regions in this Asian Indian population from Punjab. More detailed examination of these regions with more informative genotyping, sequencing, and functional studies should lead to rapid detection of novel targets of therapeutic importance. © 2011 Sanghera et al.
- Published
- 2011
14. Interpretation of genetic association studies: Markers with replicated highly significant odds ratios may be poor classifiers
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Jakobsdottir, J, Gorin, MB, Conley, YP, Ferrell, RE, Weeks, DE, Jakobsdottir, J, Gorin, MB, Conley, YP, Ferrell, RE, and Weeks, DE
- Abstract
Recent successful discoveries of potentially causal single nucleotide polymorphisms (SNPs) for complex diseases hold great promise, and commercialization of genomics in personalized medicine has already begun. The hope is that genetic testing will benefit patients and their families, and encourage positive lifestyle changes and guide clinical decisions. However, for many complex diseases, it is arguable whether the era of genomics in personalized medicine is here yet. We focus on the clinical validity of genetic testing with an emphasis on two popular statistical methods for evaluating markers. The two methods, logistic regression and receiver operating characteristic (ROC) curve analysis, are applied to our age-related macular degeneration dataset. By using an additive model of the CFH, LOC387715, and C2 variants, the odds ratios are 2.9, 3.4, and 0.4, with p-values of 10 -13, 10-13, and 10-3, respectively. The area under the ROC curve (AUC) is 0.79, but assuming prevalences of 15%, 5.5%, and 1.5% (which are realistic for age groups 80 y, 65 y, and 40 y and older, respectively), only 30%, 12%, and 3% of the group classified as high risk are cases. Additionally, we present examples for four other diseases for which strongly associated variants have been discovered. In type 2 diabetes, our classification model of 12 SNPs has an AUC of only 0.64, and two SNPs achieve an AUC of only 0.56 for prostate cancer. Nine SNPs were not sufficient to improve the discrimination power over that of nongenetic predictors for risk of cardiovascular events. Finally, in Crohn's disease, a model of five SNPs, one with a quite low odds ratio of 0.26, has an AUC of only 0.66. Our analyses and examples show that strong association, although very valuable for establishing etiological hypotheses, does not guarantee effective discrimination between cases and controls. The scientific community should be cautious to avoid overstating the value of association findings in terms of personalized me
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- 2009
15. C2 and CFB genes in Age-related maculopathy and joint action with CFH and LOC387715 genes
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Jakobsdottir, J, Conley, YP, Weeks, DE, Ferrell, RE, Gorin, MB, Jakobsdottir, J, Conley, YP, Weeks, DE, Ferrell, RE, and Gorin, MB
- Abstract
Background: Age-related maculopathy (ARM) is a common cause of visual impairment in the elderly populations of industrialized countries and significantly affects the quality of life of those suffering from the disease. Variants within two genes, the complement factor H (CFH) and the poorly characterized LOC387715 (ARMS2), are widely recognized as ARM risk factors. CFH is important in regulation of the alternative complement pathway suggesting this pathway is involved in ARM pathogenesis. Two other complement pathway genes, the closely linked complement component receptor (C2) and complement factor B (CFB), were recently shown to harbor variants associated with ARM. Methods/Principal Findings: We investigated two SNPs in C2 and two in CFB in independent case-control and family cohorts of white subjects and found rs547154, an intronic SNP in C2, to be significantly associated with ARM in both our case-control (P-value 0.00007) and family data (P-value 0.00001). Logistic regression analysis suggested that accounting for the effect at this locus significantly (P-value 0.002) improves the fit of a genetic risk model of CFH and LOC387715 effects only. Modeling with the generalized multifactor dimensionality reduction method showed that adding C2 to the two-factor model of CFH and LOC387715 increases the sensitivity (from 63% to 73%). However, the balanced accuracy increases only from 71% to 72%, and the specificity decreases from 80% to 72%. Conclusions/Significance: C2/CFB significantly influences AMD susceptibility and although accounting for effects at this locus does not dramatically increase the overall accuracy of the genetic risk model, the improvement over the CFH-LOC387715 model is statistically significant. © 2008 Jakobsdottir et al.
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- 2008
16. A preliminary study on T-786C endothelial nitric oxide synthase gene and renal hemodynamic and blood pressure responses to dietary sodium.
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Dengel, DR, primary, Brown, MD, additional, Ferrell, RE, additional, Reynolds, TH, additional, and Supiano, MA, additional
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- 2007
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17. IGF2 genotype and obesity in men and women across the adult age span
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Roth, SM, primary, Schrager, MA, additional, Metter, EJ, additional, Riechman, SE, additional, Fleg, JL, additional, Hurley, BF, additional, and Ferrell, RE, additional
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- 2002
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18. Trp64Arg substitution in the β3-adrenergic receptor does not relate to body weight in healthy, premenopausal women
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Moriarty, M, primary, Wing, RR, additional, Kuller, LH, additional, and Ferrell, RE, additional
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- 1997
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19. Associations between dietary factors and serum lipids by apolipoprotein E polymorphism
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Marshall, JA, primary, Kamboh, MI, additional, Bessesen, DH, additional, Hoag, S, additional, Hamman, RF, additional, and Ferrell, RE, additional
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- 1996
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20. Two DNA polymorphisms in the lipoprotein lipase gene and their associations with factors related to cardiovascular disease.
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Ahn, YI, primary, Kamboh, MI, additional, Hamman, RF, additional, Cole, SA, additional, and Ferrell, RE, additional
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- 1993
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21. Association of the ACTN3 genotype and physical functioning with age in older adults.
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Delmonico MJ, Zmuda JM, Taylor BC, Cauley JA, Harris TB, Manini TM, Schwartz A, Li R, Roth SM, Hurley BF, Bauer DC, Ferrell RE, Newman AB, Health ABC, MrOS Research Group, Delmonico, Matthew J, Zmuda, Joseph M, Taylor, Brent C, Cauley, Jane A, and Harris, Tamara B
- Abstract
Objective: The purpose of this study was to examine the association of the alpha-actinin-3 (ACTN3) R577X polymorphism on muscle function and physical performance in older adults.Methods: We measured knee extensor torque, midthigh muscle cross-sectional area, muscle quality, short physical performance battery score, and 400-meter walk time at baseline and after 5 years in white older adults aged 70-79 years in the Health, Aging and Body Composition Study cohort (n = 1367). Incident persistent lower extremity limitation (PLL) over 5 years was additionally assessed. We also examined white men in the Osteoporotic Fractures in Men Study, a longitudinal, observational cohort (n = 1152) of men 65 years old or older as a validation cohort for certain phenotypes.Results: There were no significant differences between genotype groups in men or women for adjusted baseline phenotypes. Male X-homozygotes had a significantly greater adjusted 5-year increase in their 400-meter walk time compared to R-homozygotes and heterozygotes (p =.03). In women, X-homozygotes had a approximately 35% greater risk of incident PLL compared to R-homozygotes (hazard ratio = 0.65, 95% confidence interval = 0.44-0.94). There were no other significant associations between any of the phenotypes and ACTN3 genotype with aging in either cohort.Conclusions: The ACTN3 polymorphism may influence declines in certain measures of physical performance with aging in older white adults, based on longitudinal assessments. However, the influence of the ACTN3 R577X polymorphism does not appear to have a strong effect on skeletal muscle-related phenotypes based on the strength and consistency of the associations and lack of replication with regard to specific phenotypes. [ABSTRACT FROM AUTHOR]- Published
- 2008
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22. Polymorphic variability in the interleukin (IL)-1beta promoter conditions susceptibility to severe malarial anemia and functional changes in IL-1beta production.
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Ouma C, Davenport GC, Awandare GA, Keller CC, Were T, Otieno MF, Vulule JM, Martinson J, Ong'echa JM, Ferrell RE, Perkins DJ, Ouma, Collins, Davenport, Gregory C, Awandare, Gordon A, Keller, Christopher C, Were, Tom, Otieno, Michael F, Vulule, John M, Martinson, Jeremy, and Ong'echa, John M
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Interleukin (IL)-1beta is a cytokine released as part of the innate immune response to Plasmodium falciparum. Because the role played by IL-1beta polymorphic variability in conditioning the immunopathogenesis of severe malarial anemia (SMA) remains undefined, relationships between IL-1beta promoter variants (-31C/T and -511A/G), SMA (hemoglobin [Hb] level <6.0 g/dL), and circulating IL-1beta levels were investigated in children with parasitemia (n= 566) from western Kenya. The IL-1beta promoter haplotype -31C/-511A (CA) was associated with increased risk of SMA (Hb level <6.0 g/dL; odds ratio [OR], 1.98 [95% confidence interval {CI}, 1.55-2.27]; P < .05) and reduced circulating IL-1beta levels (p <.05). The TA (-31T/-511A) haplotype was nonsignificantly associated with protection against SMA (OR, 0.52 [95% CI, 0.18-1.16]; p =.11) and elevated IL-1beta production ( p<.05). Compared with the non-SMA group, children with SMA had significantly lower IL-1beta levels and nonsignificant elevations in both IL-1 receptor antagonist (IL-1Ra) and the ratio of IL-1Ra to IL-1beta. The results presented demonstrate that variation in IL-1beta promoter conditions susceptibility to SMA and functional changes in circulating IL-1beta levels. [ABSTRACT FROM AUTHOR]
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- 2008
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23. Haptoglobin genotype: a determinant of cardiovascular complication risk in type 1 diabetes.
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Costacou T, Ferrell RE, Orchard TJ, Costacou, Tina, Ferrell, Robert E, and Orchard, Trevor J
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Objective: Haptoglobin is a plasma protein that binds free hemoglobin, thereby inhibiting hemoglobin-induced oxidative damage. We investigated the association between the haptoglobin genotype and the incidence of coronary artery disease (CAD) in a cohort of individuals with childhood-onset type 1 diabetes.Research Design and Methods: Participants from the Epidemiology of Diabetes Complications Study who were free of CAD at study entry and had DNA available were selected (n = 453, mean age 27.1 years, and diabetes duration 18.8 years). CAD was defined as angina, ischemic electrocardiogram, myocardial infarction confirmed by Q-waves on electrocardiogram or hospital records, angiographic stenosis >50%, or revascularization.Results: The proportions of the cohort with the haptoglobin 1/1, 2/1, and 2/2 genotypes were 11.5, 41.3, and 47.2%, respectively. During 18 years of follow-up, there were 135 (29.8%) incident CAD events. Univariately, the proportion of CAD events increased from 15.4 to 28.3 and 34.6% for haptoglobin 1/1, 2/1, and 2/2, respectively (P = 0.02, P-trend = 0.007). Cumulative incidence (including 33 baseline prevalent cases) also increased from 24.1 to 32.3 and 39.1%, respectively (P = 0.07, P-trend = 0.02). In Cox proportional hazards models adjusting for traditional CAD risk factors, the haptoglobin 2/2 genotype was associated with increased CAD incidence compared with the haptoglobin 1/1 genotype (hazard ratio [HR] 2.21, 95% CI 1.05-4.65, P = 0.04). Although the risk associated with the haptoglobin 2/1 genotype did not reach significance (1.78, 0.84-3.79, P = 0.13), there remained a significant trend across the three groups (P = 0.03).Conclusions: These data support the hypothesis that the haptoglobin genotype influences cardiovascular risk in type 1 diabetes. [ABSTRACT FROM AUTHOR]- Published
- 2008
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24. The SPINK1 N34S mutation is not associated with Type 2 diabetes mellitus in a population of the USA.
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Schneider A, Lawrence EC, Barmada MM, Norris JM, Hamman RF, Marshall JA, Ferrell RE, and Whitcomb DC
- Abstract
AIMS: Mutations in the serine protease inhibitor (SPINK1) gene have been associated with all forms of chronic pancreatitis. Recently, an association of SPINK1 mutations with early-onset Type 2 diabetes mellitus has been reported in patients from Bangladesh. Therefore, we determined the frequency of SPINK1 N34S mutations in patients with Type 2 diabetes mellitus from the USA. METHODS: The study population of Hispanic and non-Hispanic white people consisted of 387 patients with Type 2 diabetes and familial clustering of the disease, 232 family members without diabetes, 259 patients with Type 2 diabetes without a family history, and 302 ethnically matched healthy controls as part of the San Luis Valley Diabetes Study. We performed linkage- and association-analysis in 82 multiplex families with Type 2 diabetes mellitus. RESULTS: No significant linkage or allele sharing was detected between Type 2 diabetes mellitus and the SPINK1 locus. The frequency of the N34S mutation was determined by fluorescence polarization and was similar between patients (n = 14/387 patients with familial clustering; n = 2/259 patients without family history) and controls (n = 5/232 family members without diabetes; n = 10/302 individuals). Variables such as ethnicity, age of diabetes onset and percentage of individuals with impaired glucose tolerance did not differ significantly between carriers and homozygous normal individuals. CONCLUSION: The SPINK1 N34S mutation appears not to predispose Hispanic or non-Hispanic white people from the USA to the development of Type 2 diabetes mellitus. [ABSTRACT FROM AUTHOR]
- Published
- 2005
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- View/download PDF
25. The socio-economic status of communities predicts variation in brain serotonergic responsivity.
- Author
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Manuck SB, Bleil ME, Petersen KL, Flory JD, Mann JJ, Ferrell RE, and Muldoon MF
- Abstract
BACKGROUND: We reported previously that the socio-economic status (SES) of individuals predicts variation in brain serotonergic responsivity, as assessed by neuropharmacological challenge in an adult community sample, and that this association is qualified by allelic variation in the serotonin transporter gene-linked polymorphic region (5-HTTLPR). Here we examine whether serotonergic responsivity covaries similarly with the SES of communities, as indexed by US Census data in the same study sample. METHOD: Community SES was defined by levels of income, economic disadvantage, housing costs, and educational attainment of census tracts in which 249 locally recruited study participants (54% male) resided. Serotonergic responsivity was assessed as the baseline-adjusted, peak plasma prolactin (Prl) concentration following acute administration of the serotonin-releasing agent, fenfluramine; tissue for DNA extraction and 5-HTTLPR genotyping was available on 131 participants. RESULTS: Subjects residing in census tracts of lower SES showed a blunted Prl response to fenfluramine (diminished serotonergic responsivity) relative to individuals living in more affluent neighborhoods. When adjusted for personal income and education, SES at the community level continued to predict fenfluramine-stimulated Prl responses and did so independently of 5-HTTLPR genotype. CONCLUSIONS: Area-level indices of relative social and economic disadvantage covary with individual differences in brain serotonergic responsivity, and this association is, in part, independent of individually defined SES. These findings may be relevant to reported effects of low community SES on the prevalence of psychiatric disorders or behaviors associated with dysregulation of central serotonergic function, such as depression, impulsive aggression, and suicide. [ABSTRACT FROM AUTHOR]
- Published
- 2005
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26. Heart rate variability is associated with polymorphic variation in the choline transporter gene.
- Author
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Neuman SA, Lawrence EC, Jennings JR, Ferrell RE, and Manuck SB
- Published
- 2005
27. Blood pressure response to strength training may be influenced by angiotensinogen A-20C and angiotensin II type I receptor A1166C genotypes in older men and women.
- Author
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Delmonico MJ, Ferrell RE, Meerasahib A, Martel GF, Roth SM, Kostek MC, and Hurley BF
- Abstract
OBJECTIVES: To determine the influence of angiotensinogen (AGT) A-20C, M235 T, and angiotensin II type 1 receptor (AGTR1) A1166C genotypes on resting blood pressure (BP) response to strength training (ST) in older men and women. DESIGN: Prospective intervention study with retrospective genotyping. SETTING: University of Maryland Exercise Physiology Laboratory. PARTICIPANTS: Seventy sedentary, healthy older men (n=34) and women (n=36). INTERVENTION: Approximately 23 weeks of ST performed 3 days per week. MEASUREMENTS: Resting BP was measured on six separate occasions before and after ST for each subject. AGT and AGTR1 genotyping was performed retrospectively from each subject's genomic deoxyribonucleic acid. RESULTS: Systolic BP decreased in C-allele carriers at the AGT A-20C locus with ST (122+/-1 to 116+/-2 mmHg, P<.05), which was significantly greater than the decrease in the A homozygotes (126+/-1 to 123+/-1 mmHg, P<.05). At the AGTR1 A1166C locus, diastolic BP decreased to a greater extent in the C-allele carriers (76+/-1 to 70+/-2 mmHg, P<.05) than in the A homozygotes (75+/-1 to 72+/-1 mmHg, P<.05). CONCLUSION: The AGT A-20C and AGTR1 A1166C genotypes may influence resting BP response to ST, such that C-allele carriers at each of these loci reduce their resting BP in response to ST to a greater extent than A homozygotes. [ABSTRACT FROM AUTHOR]
- Published
- 2005
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28. Highly polymorphic apolipoprotein A-IV locus in the baboon.
- Author
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Ferrell, RE, primary, Sepehrnia, B, additional, Kamboh, MI, additional, and VandeBerg, JL, additional
- Published
- 1990
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29. eNOS T-786C genotype, physical activity, and peak forearm blood flow in females.
- Author
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Data SA, Roltsch MH, Hand B, Ferrell RE, Park J, and Brown MD
- Published
- 2003
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30. Allelic variation in the serotonin transporter gene-linked polymorphic region (5-HTTLPR) and cardiovascular reactivity in young adult male and female twins of European-American descent.
- Author
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McCaffery JM, Bleil M, Pogue-Geile MF, Ferrell RE, Manuck SB, McCaffery, Jeanne M, Bleil, Maria, Pogue-Geile, Michael F, Ferrell, Robert E, and Manuck, Stephen B
- Published
- 2003
- Full Text
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31. Association between the dopamine receptor D5 gene and the liability to substance dependence in males: a replication.
- Author
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Vanyukov MM, Maher BS, Ferrell RE, Devlin B, Marazita ML, and Kirillova GP
- Abstract
The heritability of substance dependence (SD) liability is based on polymorphisms at the genes that are likely to be related to the function of the central nervous systern. We have recently shown an association between the dopamine DS receptor gene and SD liability. We report herein a replication of this association in an independent case-control sample. [ABSTRACT FROM AUTHOR]
- Published
- 2001
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32. The heritability of otitis media: a twin and triplet study.
- Author
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Casselbrant ML, Mandel EM, Fall PA, Rockette HE, Kurs-Lasky M, Bluestone CD, Ferrell RE, Casselbrant, M L, Mandel, E M, Fall, P A, Rockette, H E, Kurs-Lasky, M, Bluestone, C D, and Ferrell, R E
- Abstract
Context: Anatomical, physiological, and epidemiological data indicate that there may be a significant genetic component to prolonged time with and recurrent episodes of otitis media in children.Objective: To determine the genetic component of time with and episodes of middle ear effusion and acute otitis media (AOM) during the first 2 years of life.Design: Prospective twin and triplet cohort study with enrollment from 1982 through 1995.Setting: Otitis Media Research Center in the ear, nose, and throat clinic of Children's Hospital of Pittsburgh, Pittsburgh, Pa.Patients: A total of 168 healthy same-sex twin and 7 triplet sets were recruited within the first 2 months of life; zygosity results were available for 140 sets; 138 (99%) of these were followed up for 1 year and 126 (90%) for 2 years.Main Outcome Measures: Proportion of time with middle ear effusion, episodes of middle ear effusion, and episodes of AOM by zygosity status.Results: At the 2-year end point, the estimate of heritability of time with middle ear effusion was 0.73 (P<.001). The estimates of discordance for 3 or more episodes of middle ear effusion were 0.04 for monozygotic twins and 0.37 for dizygotic twins (P = .01). The estimate of discordance of an episode of AOM in monozygotic twins was 0.04 compared with 0.49 in dizygotic twins (P = .005).Conclusions: Our study suggests there is a strong genetic component to the amount of time with middle ear effusion and episodes of middle ear effusion and AOM in children. [ABSTRACT FROM AUTHOR]- Published
- 1999
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33. Estimating the age-at-onset function using life-table methods.
- Author
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Chidambaram, A., Chakravarti, A., Ferrell, RE, Lyengar, S., and Rao, D. C.
- Published
- 1988
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34. Structural studies on dendrostomum pyroides hemerythrin
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Kitto Gb and Ferrell Re
- Subjects
Autoanalysis ,Chemistry ,Acylation ,Hydantoins ,Iron ,Proteins ,Fluorine ,Computational biology ,Acetates ,Chromatography, Ion Exchange ,Biological Evolution ,Invertebrates ,Biochemistry ,Hemerythrin ,Species Specificity ,Chromatography, Gel ,Methods ,Animals ,Electrophoresis, Paper ,Trypsin ,Amino Acid Sequence ,Chromatography, Thin Layer ,Amino Acids ,Peptides - Published
- 1971
35. X-Ray Radiographic Investigation of Perchloroethylene Migration at the Livingston Derailment Site
- Author
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Ferrell, RE, Arman, A, and Grosch, JJ
- Abstract
X-ray radiography of soil cores was used as the primary test method to determine the reasons for the permeation of perchloroethylene into apparently impermeable clay layers at a hazardous chemical spill site. X-ray powder diffractometry, scanning electron microscopy, and chemical analysis were also performed to characterize the materials and structures observed in the soil cores through X radiography and to verify the presence or absence of perchloroethylene.X-ray radiography proved to be an invaluable tool in the examination of the soil structure and in the solution of the problem. Results showed the presence of a three-dimensional network of iron-lined fissures, concretions, and roots in otherwise low permeability clay. These conduits were responsible for the rapid permeation of the perchloroethylene.
- Published
- 1989
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36. Interpreting the Physical Properties of a Clay Using Microanalysis Techniques
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McManis, KL, Ferrell, RE, and Arman, A
- Abstract
A microanalysis with the scanning electron microscope and energy dispersive X-ray microprobe (SEM-EDS) is used to explain the apparent brittle failure and sensitivity of a clay soil. The electron micrographs produced show concentrations of pyrite crystals interrupting the parallel bedding of the clay particles. These fabric modifiers significantly influence the failure mechanisms of the soil. The SEM-EDS microanalysis provides details of the fabric configuration and distribution of chemical species and their association with the soil fabric.
- Published
- 1983
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37. Properties of Dendrostomum pyroides hemerythrin
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Kitto Gb and Ferrell Re
- Subjects
Electrophoresis ,Immunodiffusion ,Chemical Phenomena ,Chemistry ,Annelida ,Iron ,Computational biology ,Blood Proteins ,Biochemistry ,Hemerythrin ,Molecular Weight ,Oxygen ,Species Specificity ,Spectrophotometry ,Animals ,Rabbits ,Amino Acids ,Isoelectric Focusing ,Peptides ,Ultracentrifugation - Published
- 1970
38. Association and links a analyses of rgs4 polymorphisms in schizophrenia
- Author
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Kodavali, Vc, Karoly, M., Prachi, S., Wood, J., Lawrence, E., Bhatia, T., Deshpande, Sn, Thelma, Bk, Ferrell, Re, Middleton, Fa, Devlin, B., Pat Levitt, Lewis, Da, and Nimgaonkar, Vl
39. X-Ray Radiographic Investigation of Perchloroethylene Migration at the Livingston Derailment Site
- Author
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Drnevich, VP, primary, Ferrell, RE, additional, Arman, A, additional, and Grosch, JJ, additional
- Published
- 1989
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40. Interpreting the Physical Properties of a Clay Using Microanalysis Techniques
- Author
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Selig, ET, primary, McManis, KL, additional, Ferrell, RE, additional, and Arman, A, additional
- Published
- 1983
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41. An Improved Method for Complement Subcomponent C1R Typing
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Kamboh, MI and Ferrell, RE
- Abstract
An improved method has been developed for the reliable classification of different C1R genetic variant forms from human serum or plasma. The method combines the use of neuraminidase-digested samples followed by monodimensional isoelectric focusing in the pH range 5 to 8 followed by immunoblotting. The method yields a simple pattern, with one major band in homozygote and two major bands in heterozygote cases.
- Published
- 1990
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42. Familial pheochromocytoma due to mutant von Hippel-Lindau disease gene.
- Author
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Mulvihill JJ, Ferrell RE, Carty SE, Tisherman SE, and Zbar B
- Published
- 1997
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43. Leptin receptor Gln223Arg polymorphism and breast cancer risk in Nigerian women: a case control study.
- Author
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Okobia MN, Bunker CH, Garte SJ, Zmuda JM, Ezeome ER, Anyanwu SN, Uche EE, Kuller LH, Ferrell RE, Taioli E, Okobia, Michael N, Bunker, Clareann H, Garte, Seymour J, Zmuda, Joseph M, Ezeome, Emmanuel R, Anyanwu, Stanley N, Uche, Emmanuel E, Kuller, Lewis H, Ferrell, Robert E, and Taioli, Emanuela
- Abstract
Background: Leptin, a 16 kDa polypeptide hormone, implicated in various physiological processes, exerts its action through the leptin receptor, a member of the class I cytokine receptor family. Both leptin and leptin receptor have recently been implicated in processes leading to breast cancer initiation and progression in animal models and humans. An A to G transition mutation in codon 223 in exon 6 of the leptin receptor gene, resulting in glutamine to arginine substitution (Gln223Arg), lies within the first of two putative leptin-binding regions and may be associated with impaired signaling capacity of the leptin receptor. This study was designed to assess the role of this polymorphism in breast cancer susceptibility in Nigerian women.Methods: We utilized a polymerase chain reaction (PCR)-based restriction fragment length polymorphism (RFLP) assay to evaluate the association between the Gln223Arg polymorphism of the leptin receptor gene and breast risk in Nigeria in a case control study involving 209 women with breast cancer and 209 controls without the disease. Study participants were recruited from surgical outpatient clinics and surgical wards of four University Teaching Hospitals located in Midwestern and southeastern Nigeria between September 2002 and April 2004.Results: Premenopausal women carrying at least one LEPR 223Arg allele were at a modestly increased risk of breast cancer after adjusting for confounders (OR = 1.8, 95% confidence interval [CI] 1.0-3.2, p = 0.07). There was no association with postmenopausal breast cancer risk (OR = 0.9, 95% CI 0.4-1.8, p = 0.68).Conclusion: Our results suggest that the LEPR Gln223Arg polymorphism in the extracellular domain of the LEPR receptor gene is associated with a modestly increased risk of premenopausal breast cancer in Nigerian women. [ABSTRACT FROM AUTHOR]- Published
- 2008
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44. Effects of age, gender, and myostatin genotype on the hypertrophic response to heavy resistance strength training.
- Author
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Ivey FM, Roth SM, Ferrell RE, Tracy BL, Lemmer JT, Hurlbut DE, Martel GF, Siegel EL, Fozard JL, Metter EJ, Fleg JL, Hurley BF, Ivey, F M, Roth, S M, Ferrell, R E, Tracy, B L, Lemmer, J T, Hurlbut, D E, Martel, G F, and Siegel, E L
- Abstract
Background: Because of the scarcity of data available from direct comparisons of age and gender groups using the same relative training stimulus, it is unknown whether older individuals can increase their muscle mass as much as young individuals and whether women can increase as much as men in response to strength training (ST). In addition, little is known about whether the hypertrophic response to ST is affected by myostatin genotype, a candidate gene for muscle hypertrophy.Methods: Eleven young men (25 +/- 3 years, range 21-29 years), 11 young women (26 +/- 2 years, range 23-28 years), 12 older men (69 +/- 3 years, range 65-75 years), and 11 older women (68 +/- 2 years, range 65-73 years) had bilateral quadriceps muscle volume measurements performed using magnetic resonance imaging (MRI) before and after ST and detraining. Training consisted of knee extension exercises of the dominant leg three times per week for 9 weeks. The contralateral limb was left untrained throughout the ST program. Following the unilateral training period, the subjects underwent 31 weeks of detraining during which no regular exercise was performed. Myostatin genotype was determined in a subgroup of 32 subjects, of which five female subjects were carriers of a myostatin gene variant.Results: A significantly greater absolute increase in muscle volume was observed in men than in women (204 +/- 20 vs 101 +/- 13 cm3, p < .01), but there was no significant difference in muscle volume response to ST between young and older individuals. The gender effect remained after adjusting for baseline muscle volume. In addition, there was a significantly greater loss of absolute muscle volume after 31 weeks of detraining in men than in women (151 +/- 13 vs 88 +/- 7 cm3, p < .05), but no significant difference between young and older individuals. Myostatin genotype did not explain the hypertrophic response to ST when all 32 subjects were assessed. However, when only women were analyzed, those with the less common myostatin allele exhibited a 68% larger increase in muscle volume in response to ST (p = .056).Conclusions: Aging does not affect the muscle mass response to either ST or detraining, whereas gender does, as men increased their muscle volume about twice as much in response to ST as did women and experienced larger losses in response to detraining than women. Young men were the only group that maintained muscle volume adaptation after 31 weeks of detraining. Although myostatin genotype may not explain the observed gender difference in the hypertrophic response to ST, a role for myostatin genotype may be indicated in this regard for women, but future studies are needed with larger subject numbers in each genotype group to confirm this observation. [ABSTRACT FROM AUTHOR]- Published
- 2000
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45. Circulating Interleukin-6 concentration covaries inversely with self-reported sleep duration as a function of polymorphic variation in the glucocorticoid receptor.
- Author
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Walsh CP, Lim A, Marsland AL, Ferrell RE, and Manuck SB
- Subjects
- Adult, Alleles, Biomarkers metabolism, C-Reactive Protein metabolism, Female, Genotype, Glucocorticoids genetics, Glucocorticoids metabolism, Haplotypes, Humans, Hydrocortisone metabolism, Hypothalamo-Hypophyseal System metabolism, Interleukin-6 analysis, Interleukin-6 blood, Interleukin-6 metabolism, Male, Middle Aged, Pituitary-Adrenal System metabolism, Polymorphism, Single Nucleotide genetics, Receptors, Glucocorticoid immunology, Receptors, Glucocorticoid metabolism, Self Report, Sleep immunology, Receptors, Glucocorticoid genetics, Sleep genetics
- Abstract
Growing evidence links extremes of self-reported sleep duration with higher circulating markers of inflammatory disease risk, although not all findings are consistent. Extremes of sleep duration also associate with activation of the hypothalamic-pituitary-adrenocortical (HPA) system and the peripheral release of cortisol, a glucocorticoid (GC) important in downregulating transcription of pro-inflammatory molecules. Polymorphic variation in the gene encoding the GC receptor (GR; NR3C1) modulates cellular sensitivity to GC-mediated anti-inflammatory signaling, thereby affecting levels of pro-inflammatory molecules. Thus, we hypothesized that extremes of self-reported sleep duration may covary with circulating levels of inflammatory markers as a function of allelic variation in NR3C1. Specifically, we examine the possibility that a single nucleotide polymorphism of the GR gene-(rs6198), the minor (G) allele of which confers reduced GR sensitivity-moderates an association of sleep duration with interleukin (IL)-6 and C-reactive protein (CRP) among a large sample (IL-6: N = 857; CRP: N = 929) of midlife community volunteers of European ancestry. Findings showed that sleep duration varied inversely with IL-6 (β = -0.087, p = .012), and this association was stronger among individuals homozygous for the rs6198 G-allele compared to alternate genotypes (β = -0.071, p = .039). We also found that sleep duration showed a U-shaped association with CRP (polynomial term: β = 0.093, p = .006), which was not moderated by rs6198 genotype. In conclusion, we show that a common genetic variant in the GR moderates an inverse association of self-reported sleep duration with circulating IL-6, possibly contributing to the increased disease risk observed among some short sleepers., (Copyright © 2019 Elsevier Inc. All rights reserved.)
- Published
- 2019
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46. Genetic association and differential expression of PITX2 with acute appendicitis.
- Author
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Orlova E, Yeh A, Shi M, Firek B, Ranganathan S, Whitcomb DC, Finegold DN, Ferrell RE, Barmada MM, Marazita ML, Hinds DA, Shaffer JR, and Morowitz MJ
- Subjects
- Acute Disease, Adolescent, Adult, Appendicitis pathology, Case-Control Studies, Child, Child, Preschool, Cohort Studies, Female, Humans, Infant, Infant, Newborn, Inflammation etiology, Inflammation pathology, Male, Meta-Analysis as Topic, Middle Aged, Prognosis, Young Adult, Homeobox Protein PITX2, Appendectomy adverse effects, Appendicitis surgery, Biomarkers analysis, Genetic Association Studies, Homeodomain Proteins genetics, Inflammation diagnosis, Polymorphism, Single Nucleotide, Transcription Factors genetics
- Abstract
Appendicitis affects 9% of Americans and is the most common diagnosis requiring hospitalization of both children and adults. We performed a genome-wide association study of self-reported appendectomy with 18,773 affected adults and 114,907 unaffected adults of European American ancestry. A significant association with appendectomy was observed at 4q25 near the gene PITX2 (rs2129979, p value = 8.82 × 10
-14 ) and was replicated in an independent sample of Caucasians (59 affected, 607 unaffected; p value = 0.005). Meta-analysis of the associated variant across our two cohorts and cohorts from Iceland and the Netherlands (in which this association had previously been reported) showed strong cumulative evidence of association (OR = 1.12; 95% CI 1.09-1.14; p value = 1.81 × 10-23 ) and some evidence for effect heterogeneity (p value = 0.03). Eight other loci were identified at suggestive significance in the discovery GWAS. Associations were followed up by measuring gene expression across resected appendices with varying levels of inflammation (N = 75). We measured expression of 27 genes based on physical proximity to the GWAS signals, evidence of being targeted by eQTLs near the signals according to RegulomeDB (score = 1), or both. Four of the 27 genes (including PITX2) showed significant evidence (p values < 0.0033) of differential expression across categories of appendix inflammation. An additional ten genes showed nominal evidence (p value < 0.05) of differential expression, which, together with the significant genes, is more than expected by chance (p value = 6.6 × 10-12 ). PITX2 impacts morphological development of intestinal tissue, promotes an anti-oxidant response, and its expression correlates with levels of intestinal bacteria and colonic inflammation. Further studies of the role of PITX2 in appendicitis are warranted.- Published
- 2019
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47. Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci.
- Author
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Jones GT, Tromp G, Kuivaniemi H, Gretarsdottir S, Baas AF, Giusti B, Strauss E, Van't Hof FN, Webb TR, Erdman R, Ritchie MD, Elmore JR, Verma A, Pendergrass S, Kullo IJ, Ye Z, Peissig PL, Gottesman O, Verma SS, Malinowski J, Rasmussen-Torvik LJ, Borthwick KM, Smelser DT, Crosslin DR, de Andrade M, Ryer EJ, McCarty CA, Böttinger EP, Pacheco JA, Crawford DC, Carrell DS, Gerhard GS, Franklin DP, Carey DJ, Phillips VL, Williams MJ, Wei W, Blair R, Hill AA, Vasudevan TM, Lewis DR, Thomson IA, Krysa J, Hill GB, Roake J, Merriman TR, Oszkinis G, Galora S, Saracini C, Abbate R, Pulli R, Pratesi C, Saratzis A, Verissimo AR, Bumpstead S, Badger SA, Clough RE, Cockerill G, Hafez H, Scott DJ, Futers TS, Romaine SP, Bridge K, Griffin KJ, Bailey MA, Smith A, Thompson MM, van Bockxmeer FM, Matthiasson SE, Thorleifsson G, Thorsteinsdottir U, Blankensteijn JD, Teijink JA, Wijmenga C, de Graaf J, Kiemeney LA, Lindholt JS, Hughes A, Bradley DT, Stirrups K, Golledge J, Norman PE, Powell JT, Humphries SE, Hamby SE, Goodall AH, Nelson CP, Sakalihasan N, Courtois A, Ferrell RE, Eriksson P, Folkersen L, Franco-Cereceda A, Eicher JD, Johnson AD, Betsholtz C, Ruusalepp A, Franzén O, Schadt EE, Björkegren JL, Lipovich L, Drolet AM, Verhoeven EL, Zeebregts CJ, Geelkerken RH, van Sambeek MR, van Sterkenburg SM, de Vries JP, Stefansson K, Thompson JR, de Bakker PI, Deloukas P, Sayers RD, Harrison SC, van Rij AM, Samani NJ, and Bown MJ
- Subjects
- Aortic Aneurysm, Abdominal epidemiology, Genetic Predisposition to Disease epidemiology, Genetic Variation genetics, Genome-Wide Association Study trends, Humans, Aortic Aneurysm, Abdominal diagnosis, Aortic Aneurysm, Abdominal genetics, Genetic Loci genetics, Genetic Predisposition to Disease genetics, Genome-Wide Association Study methods
- Abstract
Rationale: Abdominal aortic aneurysm (AAA) is a complex disease with both genetic and environmental risk factors. Together, 6 previously identified risk loci only explain a small proportion of the heritability of AAA., Objective: To identify additional AAA risk loci using data from all available genome-wide association studies., Methods and Results: Through a meta-analysis of 6 genome-wide association study data sets and a validation study totaling 10 204 cases and 107 766 controls, we identified 4 new AAA risk loci: 1q32.3 (SMYD2), 13q12.11 (LINC00540), 20q13.12 (near PCIF1/MMP9/ZNF335), and 21q22.2 (ERG). In various database searches, we observed no new associations between the lead AAA single nucleotide polymorphisms and coronary artery disease, blood pressure, lipids, or diabetes mellitus. Network analyses identified ERG, IL6R, and LDLR as modifiers of MMP9, with a direct interaction between ERG and MMP9., Conclusions: The 4 new risk loci for AAA seem to be specific for AAA compared with other cardiovascular diseases and related traits suggesting that traditional cardiovascular risk factor management may only have limited value in preventing the progression of aneurysmal disease., (© 2016 The Authors.)
- Published
- 2017
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48. Novel HLA-DP region susceptibility loci associated with severe acute GvHD.
- Author
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Goyal RK, Lee SJ, Wang T, Trucco M, Haagenson M, Spellman SR, Verneris M, and Ferrell RE
- Subjects
- Acute Disease, Adolescent, Adult, Aged, Alleles, Allografts, Bone Marrow Transplantation, Child, Child, Preschool, Female, Genome-Wide Association Study, Hematologic Neoplasms therapy, Humans, Infant, Male, Middle Aged, Unrelated Donors, Genetic Predisposition to Disease, Graft vs Host Disease genetics, HLA-DP beta-Chains genetics, Hematologic Neoplasms genetics, Linkage Disequilibrium, Polymorphism, Single Nucleotide
- Abstract
Despite HLA allele matching, significant acute GvHD remains a major barrier to successful unrelated donor BMT. We conducted a genome-wide association study (GWAS) to identify recipient and donor genes associated with the risk of acute GvHD. A case-control design (grade III-IV versus no acute GvHD) and pooled GWA approach was used to study European-American recipients with hematological malignancies who received myeloablative conditioning non-T-cell-depleted first transplantation from HLA-A, -B, -C, -DRB1, -DQB1 allele level (10/10) matched unrelated donors. DNA samples were divided into three pools and tested in triplicate using the Affymetrix Genome-wide SNP Array 6.0. We identified three novel susceptibility loci in the HLA-DP region of recipient genomes that were associated with III-IV acute GvHD (rs9277378, P=1.58E-09; rs9277542, P=1.548E-06 and rs9277341, P=7.718E-05). Of these three single nucleotide polymorphisms (SNPs), rs9277378 and rs9277542 are located in non-coding regions of the HLA-DPB1 gene and the two are in strong linkage disequilibrium with two other published SNPs associated with acute GvHD, rs2281389 and rs9277535. Eighteen other recipient SNPs and 3 donor SNPs with a high level of significance (8E-07 or lower) were found. Our report contributes to emerging data showing clinical significance of the HLA-DP region genetic markers beyond structural matching of DPB1 alleles., Competing Interests: The authors declare no conflict of interest
- Published
- 2017
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49. Association of the OPRM1 Variant rs1799971 (A118G) with Non-Specific Liability to Substance Dependence in a Collaborative de novo Meta-Analysis of European-Ancestry Cohorts.
- Author
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Schwantes-An TH, Zhang J, Chen LS, Hartz SM, Culverhouse RC, Chen X, Coon H, Frank J, Kamens HM, Konte B, Kovanen L, Latvala A, Legrand LN, Maher BS, Melroy WE, Nelson EC, Reid MW, Robinson JD, Shen PH, Yang BZ, Andrews JA, Aveyard P, Beltcheva O, Brown SA, Cannon DS, Cichon S, Corley RP, Dahmen N, Degenhardt L, Foroud T, Gaebel W, Giegling I, Glatt SJ, Grucza RA, Hardin J, Hartmann AM, Heath AC, Herms S, Hodgkinson CA, Hoffmann P, Hops H, Huizinga D, Ising M, Johnson EO, Johnstone E, Kaneva RP, Kendler KS, Kiefer F, Kranzler HR, Krauter KS, Levran O, Lucae S, Lynskey MT, Maier W, Mann K, Martin NG, Mattheisen M, Montgomery GW, Müller-Myhsok B, Murphy MF, Neale MC, Nikolov MA, Nishita D, Nöthen MM, Nurnberger J, Partonen T, Pergadia ML, Reynolds M, Ridinger M, Rose RJ, Rouvinen-Lagerström N, Scherbaum N, Schmäl C, Soyka M, Stallings MC, Steffens M, Treutlein J, Tsuang M, Wall TL, Wodarz N, Yuferov V, Zill P, Bergen AW, Chen J, Cinciripini PM, Edenberg HJ, Ehringer MA, Ferrell RE, Gelernter J, Goldman D, Hewitt JK, Hopfer CJ, Iacono WG, Kaprio J, Kreek MJ, Kremensky IM, Madden PA, McGue M, Munafò MR, Philibert RA, Rietschel M, Roy A, Rujescu D, Saarikoski ST, Swan GE, Todorov AA, Vanyukov MM, Weiss RB, Bierut LJ, and Saccone NL
- Subjects
- Adolescent, Adult, Alleles, Case-Control Studies, Child, Cohort Studies, Gene Frequency genetics, Humans, Male, Sample Size, Genetic Association Studies, Genetic Predisposition to Disease, Polymorphism, Single Nucleotide genetics, Receptors, Opioid, mu genetics, Substance-Related Disorders genetics, White People genetics
- Abstract
The mu1 opioid receptor gene, OPRM1, has long been a high-priority candidate for human genetic studies of addiction. Because of its potential functional significance, the non-synonymous variant rs1799971 (A118G, Asn40Asp) in OPRM1 has been extensively studied, yet its role in addiction has remained unclear, with conflicting association findings. To resolve the question of what effect, if any, rs1799971 has on substance dependence risk, we conducted collaborative meta-analyses of 25 datasets with over 28,000 European-ancestry subjects. We investigated non-specific risk for "general" substance dependence, comparing cases dependent on any substance to controls who were non-dependent on all assessed substances. We also examined five specific substance dependence diagnoses: DSM-IV alcohol, opioid, cannabis, and cocaine dependence, and nicotine dependence defined by the proxy of heavy/light smoking (cigarettes-per-day >20 vs. ≤ 10). The G allele showed a modest protective effect on general substance dependence (OR = 0.90, 95% C.I. [0.83-0.97], p value = 0.0095, N = 16,908). We observed similar effects for each individual substance, although these were not statistically significant, likely because of reduced sample sizes. We conclude that rs1799971 contributes to mechanisms of addiction liability that are shared across different addictive substances. This project highlights the benefits of examining addictive behaviors collectively and the power of collaborative data sharing and meta-analyses.
- Published
- 2016
- Full Text
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50. Blood pressure interacts with APOE ε4 to predict memory performance in a midlife sample.
- Author
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Oberlin LE, Manuck SB, Gianaros PJ, Ferrell RE, Muldoon MF, Jennings JR, Flory JD, and Erickson KI
- Subjects
- Adult, Blood Glucose genetics, Blood Glucose metabolism, Female, Genotype, Humans, Lipids blood, Male, Middle Aged, Motor Activity physiology, Prehypertension genetics, Prehypertension psychology, Smoking psychology, Socioeconomic Factors, Visual Perception genetics, Visual Perception physiology, Wechsler Scales, Apolipoprotein E4 genetics, Blood Pressure genetics, Blood Pressure physiology, Memory physiology, Psychomotor Performance physiology
- Abstract
Objective: Elevated blood pressure and the Apolipoprotein ε4 allele (APOE ε4) are independent risk factors for Alzheimer's disease. We sought to determine whether the combined presence of the APOE ε4 allele and elevated blood pressure is associated with lower cognitive performance in cognitively healthy middle-aged adults., Methods: A total of 975 participants aged 30-54 (mean age = 44.47) were genotyped for APOE. Cardiometabolic risk factors including blood pressure, lipids, and glucose were assessed and cognitive function was measured using the Trail Making Test and the Visual Reproduction and Logical Memory subtests from the Wechsler Memory Scale., Results: Multivariable regression analysis showed that the association between APOE ε4 and episodic memory performance varied as a function of systolic blood pressure (SBP), such that elevated SBP was predictive of poorer episodic memory performance only in APOE ε4 carriers (β = -.092; t = -2.614; p = .009). Notably, this association was apparent at prehypertensive levels (≥130 mmHg), even after adjusting for physical activity, depression, smoking, and other cardiometabolic risk factors., Conclusions: The joint presence of APOE ε4 and elevated SBP, even at prehypertensive levels, is associated with lower cognitive performance in healthy, middle-aged adults. Results of this study suggest that the combination of APOE ε4 and elevated SBP may synergistically compromise memory function well before the appearance of clinically significant impairments. Interventions targeting blood pressure control in APOE ε4 carriers during midlife should be studied as a possible means to reduce the risk of cognitive decline in genetically susceptible samples., ((c) 2015 APA, all rights reserved).)
- Published
- 2015
- Full Text
- View/download PDF
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