Search

Using DNA methylation profiles (n = 15,456) from 348 mammalian species, we constructed phyloepigenetic trees that bear marked similarities to traditional phylogenetic ones. Using unsupervised clustering across all samples, we identified 55 distinct cytosine modules, of which 30 are related to traits such as maximum life span, adult weight, age, sex, and human mortality risk. Maximum life span is associated with methylation levels in HOXL subclass homeobox genes and developmental processes and is potentially regulated by pluripotency transcription factors. The methylation state of some modules responds to perturbations such as caloric restriction, ablation of growth hormone receptors, consumption of high-fat diets, and expression of Yamanaka factors. This study reveals an intertwined evolution of the genome and epigenome that mediates the biological characteristics and traits of different mammalian species.

Biologging tools can provide invaluable information on the movement and behaviour of animals, facilitating the elucidation of ecological dynamics, especially for wide-ranging species, and supporting conservation and management efforts. Harbour seals (Phoca vitulina) exhibit extensive habitat plasticity in their vast range across the northern hemisphere, with likely recent increases in abundance at northern latitudes, yet details of their movement behaviour in subarctic areas remain largely unknown. We used satellitetelemetry data, including nearly 5,000 locations and over 12,000 dives, obtained from six harbour seals tagged in western Hudson Bay from 2021 to 2023, to address the knowledge gap on their movement behaviour between marine and freshwater habitats in subarctic regions. We document the behavioural patterns, transit speeds, and diverse aquatic system usage, including detailed records of a harbour seal track traversing over 170 km upriver on three separate trips along the Seal River, Canada. Notably, we observed a rapid downstream transit from the Seal River to Hudson Bay, covering 214 km within a single day. Additionally, we highlight the prevalence of short dive durations in the Seal and Churchill Rivers, in contrast to longer dive durations in Hudson Bay. These insights complement existing evidence of harbour seal occurrences and river use at northern latitudes, as well as enhance our understanding of harbour seal movement ecology within Hudson Bay which can be used to better inform conservation and management strategies between connected freshwater and marine environments in the Arctic. [ABSTRACT FROM AUTHOR]

Assessing genetic structure and diversity in wildlife is particularly important in the context of climate change. The Arctic is rapidly warming, and endemic species must adapt quickly or face significant threats to persistence. Bowhead whales (Balaena mysticetus) and narwhals (Monodon monoceros) are two long‐lived Arctic species with similar habitat requirements and are often seen together in the Canadian Arctic. Although their ranges overlap extensively, bowhead whales experienced significantly greater commercial whaling mortality than narwhals over several centuries. The similar habitat requirements but different harvest histories of these two species provide an opportunity to examine present‐day genetic diversity and the demographic and genetic consequences of commercial whaling. We whole‐genome resequenced contemporary Canadian Arctic bowhead whales and narwhals to delineate population structure and reconstruct demographic history. We found higher genetic diversity in bowhead whales compared to narwhals. However, bowhead whale effective population size sharply declined contemporaneously with the intense commercial whaling period. Narwhals, in contrast, exhibited recent growth in effective population size, likely reflecting exposure to limited opportunistic commercial harvest. Bowhead whales will likely continue to experience significant genetic drift in the future, leading to the erosion of genetic diversity. In contrast, narwhals do not seem to be at imminent risk of losing their current levels of genetic variation due to their long‐term low effective population size and lack of evidence for a recent decline. This work highlights the importance of considering population trajectories in addition to genetic diversity when assessing the genetics of populations for conservation and management purposes. [ABSTRACT FROM AUTHOR]

Climate change poses new challenges to Arctic marine mammals, with increasing vessel traffic and associated underwater noise pollution emerging as significant threats. The bowhead whale (Balaena mysticetus), an endemic Arctic cetacean, faces these new threats. The Eastern Canada‐West Greenland (ECWG) bowhead whale population migrates through areas with the highest levels of vessel traffic in the Canadian Arctic. Here, we document the spatial and temporal overlap between 36 satellite‐tagged ECWG bowhead whales and vessels equipped with Automatic Identification System (AIS) transponders during 2012–2017. We report 1,145 instances where vessels were within 125 km of a tagged whale, with 306 occurrences within distances ≤50 km. Overlap between vessels and tagged bowhead whales was quantified monthly within years to investigate individual whale encounter rates. Results indicate that ECWG bowhead whales encounter the majority (79%) of vessels annually during August–October, with the highest number of encounters (42%) observed in September. Encounter rates ranged from 0.25 to 0.51 vessels encountered per day per whale during August–October compared to <0.07 vessels per day in all other months in this study. To better inform conservation strategies, further research is required to assess bowhead whale behavioral responses relative to distance from vessels. [ABSTRACT FROM AUTHOR]

Beluga whales play a critical role in the subsistence economies and cultural heritage of Indigenous communities across the Arctic, yet the effects of Indigenous hunting on beluga whales remain unknown. Here, we integrate paleogenomics, genetic simulations, and stable δ13C and δ15N isotope analysis to investigate 700 y of beluga subsistence hunting in the Mackenzie Delta area of northwestern Canada. Genetic identification of the zooarchaeological remains, which is based on radiocarbon dating, span three time periods (1290 to 1440 CE; 1450 to 1650 CE; 1800 to 1870 CE), indicates shifts across time in the sex ratio of the harvested belugas. The equal number of females and males harvested in 1450 to 1650 CE versus more males harvested in the two other time periods may reflect changes in hunting practices or temporal shifts in beluga availability. We find temporal shifts and sex-based differences in δ13C of the harvested belugas across time, suggesting historical adaptability in the foraging ecology of the whales. We uncovered distinct mitochondrial diversity unique to the Mackenzie Delta belugas, but found no changes in nuclear genomic diversity nor any substructuring across time. Our findings indicate the genomic stability and continuity of the Mackenzie Delta beluga population across the 700 y surveyed, indicating the impact of Inuvialuit subsistence harvests on the genetic diversity of contemporary beluga individuals has been negligible. [ABSTRACT FROM AUTHOR]

Killer whales (Orcinus orca) occur seasonally in the eastern Canadian Arctic (ECA), where their range expansion associated with declining sea ice have raised questions about the impacts of increasing killer whale predation pressure on Arctic‐endemic prey.We assessed diet and distribution of ECA killer whales using bulk and compound‐specific stable isotope analysis (CSIA) of amino acids (AA) of 54 skin biopsies collected from 2009 to 2020 around Baffin Island, Canada.Bulk ECA killer whale skin δ15N and δ13C values did not overlap with potential Arctic prey after adjustment for trophic discrimination, and instead reflected foraging history in the North Atlantic prior to their arrival in the ECA. Adjusted killer whale stable isotope (SI) values primarily overlapped with several species of North Atlantic baleen whales or tuna. Amino acid (AA)‐specific δ15N values indicated the ECA killer whales fed primarily on marine mammals, having similar glutamic acid δ15N–phenylalanine δ15N (δ15NGlx‐Phe) and threonine δ15N (δ15NThr) as mammal‐eating killer whales from the eastern North Pacific (ENP) that served as a comparative framework. However, one ECA whale grouped with the fish‐eating ENP ecotype based δ15NThr.Distinctive essential AA δ13C of ECA killer whale groups, along with bulk SI similarity to killer whales from different regions of the North Atlantic, indicates different populations converge in Arctic waters from a broad source area. Generalist diet and long‐distance dispersal capacity favour range expansions, and integration of these insights will be critical for assessing ecological impacts of increasing killer whale predation pressure on Arctic‐endemic species. [ABSTRACT FROM AUTHOR]

The Arctic is the fastest‐warming region on the planet, and the lengthening ice‐free season is opening Arctic waters to sub‐Arctic species such as the killer whale (Orcinus orca). As apex predators, killer whales can cause significant ecosystem‐scale changes. Setting conservation priorities for killer whales and their Arctic prey species requires knowledge of their evolutionary history and demographic trajectory. Using whole‐genome resequencing of 24 killer whales sampled in the northwest Atlantic, we first explored the population structure and demographic history of Arctic killer whales. To better understand the broader geographic relationship of these Arctic killer whales to other populations, we compared them to a globally sampled dataset. Finally, we assessed threats to Arctic killer whales due to anthropogenic harvest by reviewing the peer‐reviewed and gray literature. We found that there are two highly genetically distinct, non‐interbreeding populations of killer whales using the eastern Canadian Arctic. These populations appear to be as genetically different from each other as are ecotypes described elsewhere in the killer whale range; however, our data cannot speak to ecological differences between these populations. One population is newly identified as globally genetically distinct, and the second is genetically similar to individuals sampled from Greenland. The effective sizes of both populations recently declined, and both appear vulnerable to inbreeding and reduced adaptive potential. Our survey of human‐caused mortalities suggests that harvest poses an ongoing threat to both populations. The dynamic Arctic environment complicates conservation and management efforts, with killer whales adding top‐down pressure on Arctic food webs crucial to northern communities' social and economic well‐being. While killer whales represent a conservation priority, they also complicate decisions surrounding wildlife conservation and resource management in the Arctic amid the effects of climate change. [ABSTRACT FROM AUTHOR]