75 results on '"Fenizia, F."'
Search Results
2. Clinical activity of FOLFIRI plus cetuximab according to extended gene mutation status by next-generation sequencing: findings from the CAPRI-GOIM trial
- Author
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Ciardiello, F., Normanno, N., Maiello, E., Martinelli, E., Troiani, T., Pisconti, S., Giuliani, F., Barone, C., Cartenì, G., Rachiglio, A.M., Montesarchio, V., Tonini, G., Rizzi, D., Cinieri, S., Bordonaro, R., Febbraro, A., De Vita, F., Orditura, M., Fenizia, F., Lambiase, M., Rinaldi, A., Tatangelo, F., Botti, G., and Colucci, G.
- Published
- 2014
- Full Text
- View/download PDF
3. Tumor mutation burden testing: a survey of the International Quality Network for Pathology (IQN Path)
- Author
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Fenizia, F. Wolstenholme, N. Fairley, J.A. Rouleau, E. Cheetham, M.H. Horan, M.P. Torlakovic, E. Besse, B. Al Dieri, R. Tiniakos, D.G. Deans, Z.C. Patton, S.J. Normanno, N.
- Abstract
While tumour mutation burden (TMB) is emerging as a possible biomarker for immune-checkpoint inhibitors (ICI), methods for testing have not been standardised as yet. In April 2019, the International Quality Network for Pathology (IQN Path) launched a survey to assess the current practice of TMB testing. Of the 127 laboratories that replied, 69 (54.3%) had already introduced TMB analysis for research purposes and/or clinical applications. Fifty laboratories (72.5%) used targeted sequencing, although a number of different panels were employed. Most laboratories tested formalin-fixed paraffin-embedded material (94.2%), while 18/69 (26%) tested also cell-free DNA. Fifty-five laboratories used both single nucleotide variants and indels for TMB calculation; 20 centers included only non-synonymous variants. In conclusion, the data from this survey indicate that multiple global laboratories were capable of rapidly introducing routine clinical TMB testing. However, the variability of testing methods raises concerns about the reproducibility of results among centers. © 2021, The Author(s).
- Published
- 2021
4. Results of a global external quality assessment scheme for EGFR testing on liquid biopsy
- Author
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Normanno, N., primary, Fairley, J., additional, Cheetham, M., additional, Denis, M.G., additional, Dequeker, E., additional, Keppens, C., additional, Fenizia, F., additional, Patton, S., additional, Rouleau, E., additional, Schuuring, E., additional, Van Casteren, K., additional, and Deans, Z., additional
- Published
- 2019
- Full Text
- View/download PDF
5. Tumour mutation burden and microsatellite instability in colorectal cancer
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Fenizia, F., primary, Esposito Abate, R., additional, Pasquale, R., additional, Roma, C., additional, Lambiase, M., additional, Chicchinelli, N., additional, Graziano, P., additional, Botti, G., additional, Tatangelo, F., additional, Scognamiglio, G., additional, Pietrantonio, F., additional, and Normanno, N., additional
- Published
- 2019
- Full Text
- View/download PDF
6. Biomarker testing in oncology – Requirements for organizing external quality assessment programs to improve the performance of laboratory testing: revision of an expert opinion paper on behalf of IQNPath ABSL.
- Author
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Dufraing, K., Fenizia, F., Torlakovic, E., Wolstenholme, N., Deans, Z. C., Rouleau, E., Vyberg, M., Parry, S., Schuuring, E., Dequeker, Elisabeth M. C., on behalf of IQNPath ABSL, Normanno, N., Cheetham, M. H., Patton, S., Keppens, C., van Casteren, K., van Krieken, J. H., Fairley, J. A., Grassow-Narlik, M., and Jöhrens, K.
- Abstract
In personalized medicine, predictive biomarker testing is the basis for an appropriate choice of therapy for patients with cancer. An important tool for laboratories to ensure accurate results is participation in external quality assurance (EQA) programs. Several providers offer predictive EQA programs for different cancer types, test methods, and sample types. In 2013, a guideline was published on the requirements for organizing high-quality EQA programs in molecular pathology. Now, after six years, steps were taken to further harmonize these EQA programs as an initiative by IQNPath ABSL, an umbrella organization founded by various EQA providers. This revision is based on current knowledge, adds recommendations for programs developed for predictive biomarkers by in situ methodologies (immunohistochemistry and in situ hybridization), and emphasized transparency and an evidence-based approach. In addition, this updated version also has the aim to give an overview of current practices from various EQA providers. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
7. 57P Targeted sequencing of plasma-derived cfDNA in patients with metastatic NSCLC
- Author
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Pasquale, R., primary, Bergantino, F., additional, Fenizia, F., additional, Forgione, L., additional, Roma, C., additional, De Luca, A., additional, Rocco, G., additional, Morabito, A., additional, and Normanno, N., additional
- Published
- 2018
- Full Text
- View/download PDF
8. Clinical activity of FOLFIRI plus cetuximab according to extended gene mutation status by next generation sequencing: findings from the CAPRI-GOIM trial
- Author
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CIARDIELLO, Fortunato, Normanno N, Maiello E, MARTINELLI, Erika, TROIANI, Teresa, Pisconti S, Giuliani F, Barone C, Cartenì G, Rachiglio AM, Montesarchio V, Tonini G, Rizzi D, Cinieri S, Bordonaro R, Febbraro A, ORDITURA, Michele, Fenizia F, Lambiase M, Rinaldi A, Tatangelo F, Botti G, Colucci G., DE VITA, Ferdinando, Ciardiello, Fortunato, Normanno, N, Maiello, E, Martinelli, Erika, Troiani, Teresa, Pisconti, S, Giuliani, F, Barone, C, Cartenì, G, Rachiglio, Am, Montesarchio, V, Tonini, G, Rizzi, D, Cinieri, S, Bordonaro, R, Febbraro, A, DE VITA, Ferdinando, Orditura, Michele, Fenizia, F, Lambiase, M, Rinaldi, A, Tatangelo, F, Botti, G, and Colucci, G.
- Abstract
BACKGROUND: Treatment with anti-epidermal growth factor receptor (EGFR) monoclonal antibodies has been restricted to metastatic colorectal cancer (mCRC) patients with RAS wild-type tumors. Next generation sequencing (NGS) allows the assessment in a single analysis of a large number of gene alterations and might provide important predictive and prognostic information. PATIENTS AND METHODS: In the CAPRI-GOIM trial, 340 KRAS exon 2 wild-type mCRC patients received first line FOLFIRI plus cetuximab. Tumor samples (182/340, 53.5%) were assessed by NGS to search for mutations in 22 genes involved in colon cancer. RESULTS: Objective responses in the NGS cohort were observed in 104/182 patients [overall response rate (ORR), 57.1%; 95% confidence interval (95% CI), 52-66.4%] with a median progression free survival (mPFS) of 9.8 (95% CI, 8.7-11.5) months. NGS analysis was successfully completed in all 182 samples. One or more gene mutations (up to 5) were detected in 124/182 (68.1%) tumors within 14/22 genes for a total of 206 mutations. KRAS exon 2 mutations were identified in 29/182 (15.9%) samples, defined as wild type by local laboratory assessment. Frequently mutated genes were: TP53 (39.6%), KRAS exons 3/4 (8.8%), NRAS exons 2/3 (7.1%), PIK3CA exons 9/20 (13.2%), BRAF (8.2%). FOLFIRI plus cetuximab treatment determined ORR of 62.0% (95% CI, 55.5-74.6%) with mPFS of 11.1 (95% CI, 9.2-12.8) months in patients with KRAS and NRAS wild type tumors. Conversely, ORR was 46.6% (95% CI, 39.9-57.5%) with mPFS of 8.9 (95% CI, 7.4-9.6) months in patients with KRAS or NRAS mutations. Similarly, the subgroup of patients carrying either KRAS, NRAS, BRAF or PIK3CA mutations showed a worse outcome, although this might be due to a prognostic effect. CONCLUSIONS: This study demonstrates that NGS analysis in mCRC is feasible, reveals high level of intra and inter-tumor heterogeneity, and identifies patients that might benefit of FOLFIRI plus cetuximab treatment.
- Published
- 2014
9. Techniques and New Diagnostic Technologies (Limitations, Applications)
- Author
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Scarpa, Aldo, Simbolo, Michele, Fenizia, F., and Normanno, N.
- Subjects
molecular genotyping - Published
- 2015
10. Recommendations for the implementation of BRCA testing in the care and treatment pathways of ovarian cancer patients
- Author
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Pinto, C, Bella, M, Capoluongo, E, Carrera, P, Clemente, C, Colombo, N, Cortesi, L, De Rosa, G, Fenizia, F, Genuardi, M, Gori, S, Guarneri, V, Marchetti, A, Marchetti, P, Normanno, N, Pasini, B, Pignata, S, Radice, P, Ricevuto, E, Russo, A, Tagliaferri, P, Tassone, P, Truini, M, Varesco, L, Varesco, L., COLOMBO, NICOLETTA, Pinto, C, Bella, M, Capoluongo, E, Carrera, P, Clemente, C, Colombo, N, Cortesi, L, De Rosa, G, Fenizia, F, Genuardi, M, Gori, S, Guarneri, V, Marchetti, A, Marchetti, P, Normanno, N, Pasini, B, Pignata, S, Radice, P, Ricevuto, E, Russo, A, Tagliaferri, P, Tassone, P, Truini, M, Varesco, L, Varesco, L., and COLOMBO, NICOLETTA
- Abstract
In the last 20 years, following the identification of the BRCA1 and BRCA2 genes (hereinafter referred to as the BRCA genes), preventive pathways have been developed for the identification and clinical management of individuals at high risk of developing breast and ovarian cancer due to the presence of a pathogenic variant in either of these genes. These pathways are aimed at educating high-risk subjects on programs targeted toward early diagnosis and cancer risk reduction. The approval of a novel class of drugs, the PARP enzyme inhibitors, for the treatment of ovarian cancer patients carrying high-risk BRCA pathogenic variants has changed this scenario. BRCA testing, in addition to providing information on the risk of disease, has become also a predictive marker of drug response in ovarian carcinoma patients. These recommendations prepared by Associazione Italiana di Oncologia Medica (AIOM), Società Italiana Genetica Umana (SIGU), Società Italiana di Biochimica Clinica e Biologia Molecolare Clinica (SIBIOC) and Società Italiana di Anatomia Patologica e Citologia Diagnostica – Italian Division of the International Academy of Pathology (SIAPEC-IAP) are focused on the implementation of BRCA testing in the care and treatment pathways of ovarian cancer patients
- Published
- 2016
11. 1413P - Results of a global external quality assessment scheme for EGFR testing on liquid biopsy
- Author
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Normanno, N., Fairley, J., Cheetham, M., Denis, M.G., Dequeker, E., Keppens, C., Fenizia, F., Patton, S., Rouleau, E., Schuuring, E., Van Casteren, K., and Deans, Z.
- Published
- 2019
- Full Text
- View/download PDF
12. 125P - Tumour mutation burden and microsatellite instability in colorectal cancer
- Author
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Fenizia, F., Esposito Abate, R., Pasquale, R., Roma, C., Lambiase, M., Chicchinelli, N., Graziano, P., Botti, G., Tatangelo, F., Scognamiglio, G., Pietrantonio, F., and Normanno, N.
- Published
- 2019
- Full Text
- View/download PDF
13. Tumor heterogeneity affects the activity of epidermal growth factor receptor (EGFR) tyrosine kinase inhibitors (TKIs) in EGFR mutant non-small cell lung cancer (NSCLC) patients (pts)
- Author
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Normanno, N., primary, Rachiglio, A.M., additional, Lambiase, M., additional, Fenizia, F., additional, Iannaccone, A., additional, Chicchinelli, N., additional, Morabito, A., additional, Montanino, A., additional, Rocco, G., additional, Galetta, D., additional, Montagna, E.S., additional, Crinò, L., additional, Ludovini, V., additional, Vincenzi, B., additional, Barletta, E., additional, Pinto, C., additional, Ferraù, F., additional, Botti, G., additional, Piccirillo, M.C., additional, and Perrone, F., additional
- Published
- 2016
- Full Text
- View/download PDF
14. External Quality Assessment Schemes in the management of solid tumors: the Italian perspective
- Author
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Fenizia, F., primary, Castiglione, F., additional, Taddei, G.L., additional, Barberis, M., additional, Marchetti, A., additional, De Rosa, G., additional, Normanno, N., additional, and Pinto, C., additional
- Published
- 2016
- Full Text
- View/download PDF
15. Heterogeneity of KRAS, NRAS, BRAF and PIK3CA mutations in metastatic colorectal cancer and potential effects on therapy in the CAPRI GOIM trial.
- Author
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Rindi, Guido, Normanno, N, Rachiglio, Am, Lambiase, M, Martinelli, E, Fenizia, F, Esposito, C, Roma, C, Troiani, T, Rizzi, D, Tatangelo, F, Botti, G, Maiello, E, Colucci, G, Ciardiello, F., Rindi, Guido (ORCID:0000-0003-2996-4404), Rindi, Guido, Normanno, N, Rachiglio, Am, Lambiase, M, Martinelli, E, Fenizia, F, Esposito, C, Roma, C, Troiani, T, Rizzi, D, Tatangelo, F, Botti, G, Maiello, E, Colucci, G, Ciardiello, F., and Rindi, Guido (ORCID:0000-0003-2996-4404)
- Abstract
Heterogeneity of KRAS, NRAS, BRAF and PIK3CA mutations in metastatic colorectal cancer and potential effects on therapy in the CAPRI GOIM trial
- Published
- 2015
16. Tumor Heterogeneity and Efficacy of First-Line Cetuximab + Folfiri in Kras Mutant Metastatic Colorectal Cancer (Mcrc) Patients (Pts) of the Capri Goim Trial
- Author
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Normanno, N., primary, Rachiglio, A.M., additional, Lambiase, M., additional, Martinelli, E., additional, Fenizia, F., additional, Esposito, C., additional, Roma, C., additional, Troiani, T., additional, Tatangelo, F., additional, Botti, G., additional, Rizzi, D., additional, Maiello, E., additional, Colucci, G., additional, and Ciardiello, F., additional
- Published
- 2014
- Full Text
- View/download PDF
17. 1235P - Tumor heterogeneity affects the activity of epidermal growth factor receptor (EGFR) tyrosine kinase inhibitors (TKIs) in EGFR mutant non-small cell lung cancer (NSCLC) patients (pts)
- Author
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Normanno, N., Rachiglio, A.M., Lambiase, M., Fenizia, F., Iannaccone, A., Chicchinelli, N., Morabito, A., Montanino, A., Rocco, G., Galetta, D., Montagna, E.S., Crinò, L., Ludovini, V., Vincenzi, B., Barletta, E., Pinto, C., Ferraù, F., Botti, G., Piccirillo, M.C., and Perrone, F.
- Published
- 2016
- Full Text
- View/download PDF
18. S04 - External Quality Assessment Schemes in the management of solid tumors: the Italian perspective
- Author
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Fenizia, F., Castiglione, F., Taddei, G.L., Barberis, M., Marchetti, A., De Rosa, G., Normanno, N., and Pinto, C.
- Published
- 2016
- Full Text
- View/download PDF
19. A03* - Tumor heterogeneity affects the activity of epidermal growth factor receptor (EGFR) tyrosine kinase inhibitors (TKIs) in EGFR mutant non-small cell lung cancer (NSCLC) patients (pts)
- Author
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Normanno, N., Rachiglio, A.M., Lambiase, M., Fenizia, F., Iannaccone, A., Chicchinelli, N., Morabito, A., Rocco, G., Galetta, D., Montagna, E.S., Crinò, L., Ludovini, V., Vincenzi, B., Barletta, E., Pinto, C., Ferraù, F., Botti, G., Piccirillo, M.C., and Perrone, F.
- Published
- 2016
- Full Text
- View/download PDF
20. 539P - Tumor Heterogeneity and Efficacy of First-Line Cetuximab + Folfiri in Kras Mutant Metastatic Colorectal Cancer (Mcrc) Patients (Pts) of the Capri Goim Trial
- Author
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Normanno, N., Rachiglio, A.M., Lambiase, M., Martinelli, E., Fenizia, F., Esposito, C., Roma, C., Troiani, T., Tatangelo, F., Botti, G., Rizzi, D., Maiello, E., Colucci, G., and Ciardiello, F.
- Published
- 2014
- Full Text
- View/download PDF
21. FASTnet: A national platform for EGFR testing in favour of the patient and the clinician | FASTnet: una piattaforma nazionale per il test EGFR a favore del paziente e del clinico
- Author
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Fenizia, F., Pinto, C., Gaetano DE ROSA, Barberis, M., Marchetti, A., and Normanno, N.
22. Findings from the Global External Quality Assessment of Lung Cancer Liquid Biopsy Testing
- Author
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Fairley, J., Cheetham, M., Denis, M. G., Dequeker, E., Keppens, C., Fenizia, F., Normanno, N., Patton, S., Rouleau, E., Schuuring, E., Van Casteren, K., Deans, Z. C., Damage and Repair in Cancer Development and Cancer Treatment (DARE), and Targeted Gynaecologic Oncology (TARGON)
23. Recommendations for the implementation of BRCA testing in the care and treatment pathways of ovarian cancer patients
- Author
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Ettore Capoluongo, Sandro Pignata, Paola Carrera, Enrico Ricevuto, Maurizio Genuardi, Paolo Radice, Antonio Russo, Nicoletta Colombo, Carmine Pinto, Stefania Gori, Barbara Pasini, Paolo Marchetti, Nicola Normanno, Valentina Guarneri, Laura Cortesi, Antonio Marchetti, Mauro Truini, Maria Angela Bella, Pierosandro Tagliaferri, Pierfrancesco Tassone, Gaetano De Rosa, Francesca Fenizia, Claudio Clemente, Liliana Varesco, Pinto, Carmine, Bella, Maria Angela, Capoluongo, Ettore, Carrera, Paola, Clemente, Claudio, Colombo, Nicoletta, Cortesi, Laura, DE ROSA, Gaetano, Fenizia, Francesca, Genuardi, Maurizio, Gori, Stefania, Guarneri, Valentina, Marchetti, Antonio, Marchetti, Paolo, Normanno, Nicola, Pasini, Barbara, Pignata, Sandro, Radice, Paolo, Ricevuto, Enrico, Russo, Antonio, Tagliaferri, Pierosandro, Tassone, Pierfrancesco, Truini, Mauro, Varesco, Liliana, Pinto, C., Bella, M., Capoluongo, E., Carrera, P., Clemente, C., Colombo, N., Cortesi, L., De Rosa, G., Fenizia, F., Genuardi, M., Gori, S., Guarneri, V., Marchetti, A., Marchetti, P., Normanno, N., Pasini, B., Pignata, S., Radice, P., Ricevuto, E., Russo, A., Tagliaferri, P., Tassone, P., Truini, M., Varesco, L., Pinto, C, Bella, M, Capoluongo, E, Carrera, P, Clemente, C, Colombo, N, Cortesi, L, De Rosa, G, Fenizia, F, Genuardi, M, Gori, S, Guarneri, V, Marchetti, A, Marchetti, P, Normanno, N, Pasini, B, Pignata, S, Radice, P, Ricevuto, E, Russo, A, Tagliaferri, P, Tassone, P, Truini, M, and Varesco, L
- Subjects
0301 basic medicine ,Oncology ,Cancer Research ,Genes, BRCA2 ,Genes, BRCA1 ,Brca testing ,BRCA1 ,BRCA2 ,genetic testing ,germline mutations ,ovarian cancer ,PARP inhibitors ,somatic mutations ,Settore MED/03 - GENETICA MEDICA ,0302 clinical medicine ,Clinical decision making ,Informed consent ,somatic mutation ,BRCA1, BRCA2, genetic testing, germline mutations, somatic mutations, ovarian cancer, PARP inibitors ,Disease management (health) ,Ovarian Neoplasms ,Tumor ,Informed Consent ,medicine.diagnostic_test ,Disease Management ,General Medicine ,Prognosis ,Biomarkers, Tumor ,Clinical Decision-Making ,Female ,Genetic Variation ,Germ-Line Mutation ,Humans ,Mutation ,Genetic Testing ,germline mutation ,030220 oncology & carcinogenesis ,Human ,medicine.medical_specialty ,Prognosi ,MEDLINE ,03 medical and health sciences ,PARP inibitors ,Internal medicine ,medicine ,Genetic testing ,Gynecology ,business.industry ,Ovarian Neoplasm ,medicine.disease ,030104 developmental biology ,PARP inhibitor ,Genes ,Ovarian cancer ,business ,Biomarkers - Abstract
In the last 20 years, following the identification of the BRCA1 and BRCA2 genes (hereinafter referred to as the BRCA genes), preventive pathways have been developed for the identification and clinical management of individuals at high risk of developing breast and ovarian cancer due to the presence of a pathogenic variant in either of these genes. These pathways are aimed at educating high-risk subjects on programs targeted toward early diagnosis and cancer risk reduction. The approval of a novel class of drugs, the PARP enzyme inhibitors, for the treatment of ovarian cancer patients carrying high-risk BRCA pathogenic variants has changed this scenario. BRCA testing, in addition to providing information on the risk of disease, has become also a predictive marker of drug response in ovarian carcinoma patients. These recommendations prepared by Associazione Italiana di Oncologia Medica (AIOM), Società Italiana Genetica Umana (SIGU), Società Italiana di Biochimica Clinica e Biologia Molecolare Clinica (SIBIOC) and Società Italiana di Anatomia Patologica e Citologia Diagnostica – Italian Division of the International Academy of Pathology (SIAPEC-IAP) are focused on the implementation of BRCA testing in the care and treatment pathways of ovarian cancer patients.
- Published
- 2016
24. Genomic Profiling of KRAS/NRAS/BRAF/PIK3CA Wild-Type Metastatic Colorectal Cancer Patients Reveals Novel Mutations in Genes Potentially Associated with Resistance to Anti-EGFR Agents
- Author
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Alessia Iannaccone, Daniela Frezzetti, Anna Maria Rachiglio, Marianeve Carotenuto, Evaristo Maiello, Antonella De Luca, Cristin Roma, Matilde Lambiase, Francesca Fenizia, Nicola Normanno, Fortunato Ciardiello, E. Martinelli, Claudia Cardone, Rachiglio, A. M., Lambiase, M., Fenizia, F., Roma, C., Cardone, C., Iannaccone, A., De Luca, A., Carotenuto, M., Frezzetti, D., Martinelli, E., Maiello, E., Ciardiello, F., and Normanno, N.
- Subjects
0301 basic medicine ,Neuroblastoma RAS viral oncogene homolog ,Cancer Research ,Colorectal cancer ,anti-EGFR monoclonal antibodies ,colorectal cancer ,medicine.disease_cause ,lcsh:RC254-282 ,resistance ,03 medical and health sciences ,0302 clinical medicine ,MAP2K1 ,Anti-EGFR monoclonal antibodie ,medicine ,Progression-free survival ,Copy-number variation ,neoplasms ,Cetuximab ,business.industry ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,digestive system diseases ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,Cancer research ,FOLFIRI ,KRAS ,genomic profiling ,business ,medicine.drug - Abstract
Previous findings suggest that metastatic colorectal carcinoma (mCRC) patients with KRAS/NRAS/BRAF/PIK3CA wild-type (quadruple-wt) tumors are highly sensitive to anti-epidermal growth factor receptor (EGFR) monoclonal antibodies (MoAbs). However, additional molecular alterations might be involved in the de novo resistance to these drugs. We performed a comprehensive molecular profiling of 21 quadruple-wt tumors from mCRC patients enrolled in the &ldquo, Cetuximab After Progression in KRAS wild-type colorectal cancer patients&rdquo, (CAPRI-GOIM) trial of first line FOLFIRI plus cetuximab. Tumor samples were analyzed with a targeted sequencing panel covering single nucleotide variants (SNVs), insertions/deletions (Indels), copy number variations (CNVs), and gene fusions in 143 cancer-related genes. The analysis revealed in all 21 patients the presence of at least one SNV/Indel and in 10/21 cases (48%) the presence of at least one CNV. Furthermore, 17/21 (81%) patients had co-existing SNVs/Indels in different genes. Quadruple-wt mCRC from patients with the shorter progression free survival (PFS) were enriched with peculiar genetic alterations in KRAS, FBXW7, MAP2K1, and NF1 genes as compared with patients with longer PFS. These data suggest that a wide genetic profiling of quadruple-wt mCRC patients might help to identify novel markers of de novo resistance to anti-EGFR MoAbs.
- Published
- 2019
25. Heterogeneity of KRAS, NRAS, BRAF and PIK3CA mutations in metastatic colorectal cancer and potential effects on therapy in the CAPRI GOIM trial
- Author
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Giuseppe Perrone, Mario Manusia, Erika Martinelli, Eugenio Tommaselli, Salvatore Pisconti, A. Perrino, M. Biglietto, Giuseppe Colucci, A. Cardarelli, A. Onetti Muda, Francesco Giuliani, Guido Rindi, Guglielmo Nasti, D. Rizzi, Anna Maria Rachiglio, Saverio Cinieri, Evaristo Maiello, Antonio Febbraro, Fortunato Ciardiello, Gianni Simone, Giacomo Cartenì, E. Montesarchio, Matilde Lambiase, Fabiana Tatangelo, Teresa Troiani, Nicola Normanno, G. Botti, Daniela Cabibi, A. Rinaldi, Alessia Iannaccone, Pietro Micheli, C. Barone, Oscar Nappi, Antonio Russo, Cristin Roma, Roberto Bordonaro, Claudia Esposito, Annamaria Sebastio, Francesca Fenizia, Paolo Graziano, S. Romito, Giuseppe Tonini, Pantaleo Bufo, Tiziana Latiano, Nicoletta Chicchinelli, P. Giaccone, M. Criscuolo, Normanno, Nicola, Rachiglio, A.M., Lambiase, M., Martinelli, E., Fenizia, F., Esposito, C., Roma, C., Troiani, T., Rizzi, D., Tatangelo, F., Botti, G., Maiello, E., Colucci, G., Ciardiello, F., Giuliani, F., Simone, G., Febbraro, A., Tommaselli, E., Cinieri, S., Criscuolo, M., Rinaldi, A., Bordonaro, R., Manusia, M., Romito, S., Bufo, P., Cartenì, G., Biglietto, M., Nappi, O., Montesarchio, E., Micheli, P., Nasti, G., Chicchinelli, N., Iannaccone, A., Russo, A., Cabibi, D., Barone, C., Rindi, G., Tonini, G., Onetti Muda, A., Perrone, G., Latiano, T., Graziano, P., Pisconti, S., Sebastio, A., Normanno, N., and Rachiglio, A. M.
- Subjects
Oncology ,Neuroblastoma RAS viral oncogene homolog ,Organoplatinum Compounds ,Colorectal cancer ,Settore MED/06 - Oncologia Medica ,Leucovorin ,Cetuximab ,Mutations ,Next-generation sequencing ,Tumor heterogeneity ,Antineoplastic Combined Chemotherapy Protocols ,Camptothecin ,Carcinoma ,Class I Phosphatidylinositol 3-Kinases ,Colorectal Neoplasms ,Drug Resistance, Neoplasm ,Fluorouracil ,GTP Phosphohydrolases ,Gene Frequency ,High-Throughput Nucleotide Sequencing ,Humans ,Membrane Proteins ,Mutation ,Phosphatidylinositol 3-Kinases ,Proto-Oncogene Proteins B-raf ,Proto-Oncogene Proteins p21(ras) ,Treatment Outcome ,Hematology ,Colorectal Neoplasm ,medicine.disease_cause ,GTP Phosphohydrolase ,Membrane Protein ,Class I Phosphatidylinositol 3-Kinase ,colorectal ,FOLFIRI ,KRAS ,medicine.drug ,Human ,medicine.medical_specialty ,Internal medicine ,medicine ,cancer ,neoplasms ,Allele frequency ,Antineoplastic Combined Chemotherapy Protocol ,Settore MED/08 - ANATOMIA PATOLOGICA ,business.industry ,Organoplatinum Compound ,Cancer ,medicine.disease ,digestive system diseases ,Cancer research ,Neoplastic cell ,Phosphatidylinositol 3-Kinase ,business - Abstract
Background: Evidence suggests that metastatic colorectal carcinoma (mCRC) has a high level of intratumor heterogeneity. We carried out a quantitative assessment of tumor heterogeneity for KRAS, NRAS, BRAF and PIK3CA mutations, in order to assess potential clinical implications. Patients and methods: Tumor samples (n = 182) from the CAPRI-GOIM trial of first-line cetuximab + FOLFIRI in KRAS exon-2 wild-type mCRC patients were assessed by next-generation sequencing that allows quantitative assessment of mutant genes. Mutant allelic frequency was normalized for the neoplastic cell content and, assuming that somatic mutations usually affect one allele, the Heterogeneity Score (HS) was calculated by multiplying by 2 the frequency of mutant alleles in neoplastic cells. Therefore, HS virtually corresponds to the fraction of neoplastic cells carrying a specific mutation. Results: The KRAS HS ranged between 12 and 260 with mean value of 87.1 and median value of 84.4, suggesting that in most CRC, the majority of neoplastic cells carry mutant KRAS. Similar findings were observed for NRAS (HS range 35.5-146.7; mean 102.8; median 117.1). In contrast, in BRAF (HS range 17.1-120; mean 54.8; median 54.3) and PIK3CA (HS range 14.3-120; mean 59.5; median 47.3) mutant cases, only a fraction of neoplastic cells seem to carry the mutant allele. The response rate was 70% in KRAS mutant patients with an HS 33 patients (high KRAS; n = 35); median progression-free survival were 7.97 and 8.37 months, respectively. Low-KRAS tumors had a higher frequency of additional mutations in PIK3CA when compared with high-KRAS (6/10 versus 8/35). Conclusions: KRAS and NRAS mutations are usually present in the majority of neoplastic cells, whereas BRAF and PIK3CA mutations often affect a limited fraction of transformed cells. Resistance to cetuximab in low-KRAS patients might be driven by the complex mutational profile rather than KRAS mutation load.
- Published
- 2015
26. Molecular diagnostics and personalized medicine in oncology: challenges and opportunities
- Author
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Filippo Micheli, Alessia Iannaccone, Francesca Fenizia, Antonella De Luca, Francesca Bergantino, Raffaella Pasquale, Cristin Roma, Claudia Esposito, Maria Libera La Porta, Nicola Normanno, Anna Maria Rachiglio, Susan Costantini, Michele Santangelo, Normanno, N, Rachiglio, Am, Roma, C, Fenizia, F, Esposito, C, Pasquale, R, La Porta, Ml, Iannaccone, A, Micheli, F, Santangelo, Michele, Bergantino, F, Costantini, S, and De Luca, A.
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Genotype ,Colorectal cancer ,Disease ,Bioinformatics ,medicine.disease_cause ,Biochemistry ,Neoplasms ,Biomarkers, Tumor ,Medicine ,Humans ,Epidermal growth factor receptor ,Molecular Targeted Therapy ,Pathology, Molecular ,Precision Medicine ,Molecular Biology ,biology ,business.industry ,Cancer ,High-Throughput Nucleotide Sequencing ,Cell Biology ,Precision medicine ,medicine.disease ,Molecular diagnostics ,Prognosis ,Mutation ,biology.protein ,Personalized medicine ,KRAS ,business - Abstract
Increasing evidence demonstrates that target-based agents are active only in molecularly selected populations of patients. Therefore, the identification of predictive biomarkers has become mandatory to improve the clinical development of these novel drugs. Mutations of the epidermal growth factor receptor (EGFR) or rearrangements of the ALK gene in non-small-cell lung cancer, and BRAF mutations in melanoma are clear examples of driver mutations and predictive biomarkers of response to treatment with specific inhibitors. Predictive biomarkers might also identify subgroups of patients that are not likely to respond to specific drugs, as shown for KRAS mutations and anti-EGFR monoclonal antibodies in colorectal carcinoma. The discovery of novel driver molecular alterations and the availability of drugs capable to selectively block such oncogenic mechanisms are leading to a rapid increase in the number of putative biomarkers that need to be assessed in each single patient. In this respect, two different approaches are being developed to introduce a comprehensive molecular characterization in clinical practice: high throughput genotyping platforms, which allow the detection of recognized genetic aberrations in clinical samples, and next generation sequencing that can provide information on all the different types of cancer-causing alterations. The introduction of these techniques in clinical practice will increase the possibility to identify molecular targets in each individual patient, and will also allow to follow the molecular evolution of the disease during the treatment. By using these approaches, the development of personalized medicine for patients with cancer will finally become possible.
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- 2012
27. Detection of KRAS mutations in colorectal cancer with Fast COLD-PCR
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Nicola Normanno, Pietro Carotenuto, Cristin Roma, Francesca Fenizia, Salvatore Cozzolino, Fabiana Tatangelo, Luigi Baron, Gerardo Botti, Anna Maria Rachiglio, Alessia Iannaccone, Carotenuto, P., Roma, C., Cozzolino, Salvatore, Fenizia, F., Rachiglio, A., Tatangelo, F., Iannaccone, A., Baron, L., Botti, G., and N. N. o. r. m. a. n. n. o.
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Cancer Research ,Colorectal cancer ,DNA Mutational Analysis ,Mutant ,Mutation, Missense ,Biology ,medicine.disease_cause ,Polymerase Chain Reaction ,Sensitivity and Specificity ,law.invention ,Proto-Oncogene Proteins p21(ras) ,law ,Cell Line, Tumor ,Proto-Oncogene Proteins ,medicine ,Humans ,Transition Temperature ,Missense mutation ,Polymerase chain reaction ,COLD-PCR ,Genetics ,Mutation ,Base Sequence ,Cancer ,medicine.disease ,Molecular biology ,digestive system diseases ,Oncology ,ras Proteins ,KRAS ,Colorectal Neoplasms - Abstract
Patients with metastatic colorectal carcinoma (mCRC) carrying activating mutations of the KRAS gene do not benefit from treatment with anti-epidermal growth factor receptor (EGFR) monoclonal antibodies. Therefore, KRAS mutation testing of mCRC patients is mandatory in the clinical setting for the choice of the most appropriate therapy. Co-amplification-at-lower denaturation-temperature PCR (COLD-PCR) is a novel modification of the conventional PCR method that selectively amplifies minority alleles from a mixture of wild-type and mutant sequences irrespective of the mutation type or position within the sequence. In this study, we compared the sensitivity of a COLD-PCR method with conventional PCR/sequencing and the real-time PCR-based Therascreen kit to detect KRAS mutations. By using dilutions of KRAS mutant DNA in wild-type DNA from colon cancer cell lines with known KRAS status, we found that Fast COLD-PCR is more sensitive than the conventional PCR method, showing a sensitivity of 2.5% in detecting GA and GT mutations. The detection of GC transversions was not improved by either Fast COLD-PCR or Full COLD-PCR. We next analyzed by COLD-PCR, conventional PCR and Therascreen 52 formalin-fixed paraffin-embedded samples from mCRC patients. Among 36 samples with30% tumor cells, 8 samples were negative by conventional PCR, Therascreen and Fast COLD-PCR; 20 mutations identified by conventional PCR were confirmed by Therascreen and Fast COLD-PCR; 8 cases undetermined by conventional PCR were all confirmed to carry KRAS GA or GT mutations by using either Therascreen or Fast COLD-PCR. Conventional PCR was able to detect only 2 KRAS mutations among 16 samples with30% tumor cells (12.5%), whereas Therascreen and Fast COLD-PCR identified 6 mutants (37.5%). These data suggest that Fast COLD-PCR has a higher clinical sensitivity as compared with conventional PCR in detecting GC to AT changes in the KRAS gene, which represent90% of the mutations of this oncogene in CRC.
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- 2011
28. The Italian external quality assessment for RAS testing in colorectal carcinoma identifies methods-related inter-laboratory differences
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Antonio Marchetti, Carmine Pinto, Gian Luigi Taddei, Gabriella Fontanini, Massimo Barberis, Gaetano De Rosa, Francesca Fenizia, Nicola Normanno, Francesca Castiglione, Normanno, N., Pinto, C., Castiglione, F., Fenizia, F., Barberis, M., Marchetti, A., Fontanini, G., DE ROSA, Gaetano, and Taddei, G. L.
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Neuroblastoma RAS viral oncogene homolog ,Genetics and Molecular Biology (all) ,Laboratory Proficiency Testing ,Colorectal cancer ,DNA Mutational Analysis ,Bioinformatics ,medicine.disease_cause ,Biochemistry ,Medicine ,Neoplasm Metastasis ,Sanger sequencing ,Medicine(all) ,Molecular pathology ,Medicine (all) ,Exons ,General Medicine ,Quality assurance ,RAS mutations ,Biochemistry, Genetics and Molecular Biology (all) ,ErbB Receptors ,Europe ,Italy ,Paraffin ,symbols ,KRAS ,Colorectal Neoplasms ,Quality Control ,medicine.medical_specialty ,Genotype ,General Biochemistry, Genetics and Molecular Biology ,symbols.namesake ,Formaldehyde ,Internal medicine ,External quality assessment ,Humans ,False Positive Reactions ,Codon ,Models, Statistical ,business.industry ,Biochemistry, Genetics and Molecular Biology(all) ,Research ,Reproducibility of Results ,medicine.disease ,Genes, ras ,Mutation ,ras Proteins ,business - Abstract
Background: In 2014 the European Medicines Agency included exon 2, 3 and 4 KRAS and NRAS testing for the selection of metastatic colorectal cancer (mCRC) patients eligible for the therapy with anti-EGFR monoclonal antibodies. The Italian Association of Medical Oncology (AIOM) and the Italian Society of Pathology and Cytology (SIAPEC) organized an external quality assessment (EQA) scheme for CRC to evaluate inter-laboratory consistency and to ensure standardization of the results in the transition from KRAS to all-RAS testing. Methods: Ten formalin fixed paraffin embedded specimens including KRAS/NRAS (exons 2, 3, 4) and BRAF (codon 600) mutations were validated by three referral laboratories and sent to 88 participant centers. Molecular pathology sample reports were also requested to each laboratory. A board of assessors from AIOM and SIAPEC evaluated the results according to a predefined scoring system. The scheme was composed of two rounds. Results: In the first round 36 % of the 88 participants failed, with 23 centers having at least one false positive or false negative while 9 centers did not meet the deadline. The genotyping error rate was higher when Sanger sequencing was employed for testing as compared with pyrosequencing (3 vs 1.3 %; p = 0.01; Pearson Chi Square test). In the second round, the laboratories improved their performance, with 23/32 laboratories passing the round. Overall, 79/88 participants passed the RAS EQA scheme. Standardized Human Genome Variation Society nomenclature was incorrectly used to describe the mutations identified and relevant variations were noticed in the genotype specification. Conclusion: The results of the Italian RAS EQA scheme indicate that the mutational analyses are performed with good quality in many Italian centers, although significant differences in the methods used were highlighted. The relatively high number of centers failing the first round underlines the fundamental role in continued education covered by EQA schemes
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29. A Urologist's Guide to Caring for Transgender and Gender Diverse Patients.
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Maffucci F, Clark J, Jun M, and Douglass L
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Urologists are experts in the fields of genital and pelvic anatomy, sexual health and reproductive medicine. As such, a working understanding of urologic conditions relevant to transgender and gender diverse patients should be expected within their scope of practice. Herein, we describe an introductory framework for general urologists to grow their knowledge of the appropriate terminology, anatomy, and basic tenets of gender-affirming care to better manage the urologic needs of transgender and gender diverse patients., (Copyright © 2023 Elsevier Inc. All rights reserved.)
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- 2023
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30. Is There Any Benefit to the Use of Antibiotics with Indwelling Catheters after Urologic Surgery in Adults.
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Maffucci F, Chang C, Simhan J, and Cohn JA
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Antibiotic stewardship in urologic reconstruction is critically important, as many patients will require indwelling catheters for days to weeks following surgery and thus are at risk of both developing catheter-associated urinary tract infections (CAUTI) as well as multi-drug resistant (MDR) uropathogens. Accordingly, limiting antibiotic use, when safe, should help reduce antibiotic resistance and the prevalence of MDR organisms. However, there is significant heterogeneity in how antibiotics are prescribed to patients who need indwelling urethral catheters post-operatively. We performed a literature review to determine if there are benefits in the use of antibiotics for various clinical scenarios that require post-operative indwelling catheters for greater than 24 h. In general, for patients undergoing prostatectomy, transurethral resection of the prostate, and/or urethroplasty, antibiotic administration may be limited without increased risk of CAUTI. However, more work is needed to identify optimal antibiotic regimens for these and alternative urologic procedures, whether certain sub-populations benefit from longer courses of antibiotics, and effective non-antibiotic or non-systemic therapies.
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- 2023
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31. Results of a worldwide external quality assessment of cfDNA testing in lung Cancer.
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Fairley JA, Cheetham MH, Patton SJ, Rouleau E, Denis M, Dequeker EMC, Schuuring E, van Casteren K, Fenizia F, Normanno N, and Deans ZC
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- ErbB Receptors genetics, Gene Frequency, Humans, Mutation, Cell-Free Nucleic Acids, Lung Neoplasms diagnosis, Lung Neoplasms genetics
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Background: Circulating cell free DNA (cfDNA) testing of plasma for EGFR somatic variants in lung cancer patients is being widely implemented and with any new service, external quality assessment (EQA) is required to ensure patient safety. An international consortium, International Quality Network for Pathology (IQNPath), has delivered a second round of assessment to measure the accuracy of cfDNA testing for lung cancer and the interpretation of the results., Methods: A collaboration of five EQA provider organisations, all members of IQNPath, have delivered the assessment during 2018-19 to a total of 264 laboratories from 45 countries. Bespoke plasma reference material containing a range of EGFR mutations at varying allelic frequencies were supplied to laboratories for testing and reporting according to routine procedures. The genotyping accuracy and clinical reporting was reviewed against standardised criteria and feedback was provided to participants., Results: The overall genotyping error rate in the EQA was found to be 11.1%. Low allelic frequency samples were the most challenging and were not detected by some testing methods, resulting in critical genotyping errors. This was reflected in higher false negative rates for samples with variant allele frequencies (VAF) rates less than 1.5% compared to higher frequencies. A sample with two different EGFR mutations gave inconsistent detection of both mutations. However, for one sample, where two variants were present at a VAF of less than 1% then both mutations were correctly detected in 145/263 laboratories. Reports often did not address the risk that tumour DNA may have not been tested and limitations of the methodologies provided by participants were insufficient. This was reflected in the average interpretation score for the EQA being 1.49 out of a maximum of 2., Conclusions: The variability in the standard of genotyping and reporting highlighted the need for EQA and educational guidance in this field to ensure the delivery of high-quality clinical services where testing of cfDNA is the only option for clinical management., (© 2022. The Author(s).)
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- 2022
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32. Tumor mutation burden testing: a survey of the International Quality Network for Pathology (IQN Path).
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Fenizia F, Wolstenholme N, Fairley JA, Rouleau E, Cheetham MH, Horan MP, Torlakovic E, Besse B, Al Dieri R, Tiniakos DG, Deans ZC, Patton SJ, and Normanno N
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- Australia, Canada, Clinical Decision-Making, Europe, Health Care Surveys, Humans, Immune Checkpoint Inhibitors therapeutic use, Laboratory Proficiency Testing, Neoplasms drug therapy, Neoplasms pathology, Observer Variation, Precision Medicine, Predictive Value of Tests, Reproducibility of Results, Biomarkers, Tumor genetics, DNA Mutational Analysis, High-Throughput Nucleotide Sequencing, INDEL Mutation, Neoplasms genetics, Polymorphism, Single Nucleotide
- Abstract
While tumour mutation burden (TMB) is emerging as a possible biomarker for immune-checkpoint inhibitors (ICI), methods for testing have not been standardised as yet. In April 2019, the International Quality Network for Pathology (IQN Path) launched a survey to assess the current practice of TMB testing. Of the 127 laboratories that replied, 69 (54.3%) had already introduced TMB analysis for research purposes and/or clinical applications. Fifty laboratories (72.5%) used targeted sequencing, although a number of different panels were employed. Most laboratories tested formalin-fixed paraffin-embedded material (94.2%), while 18/69 (26%) tested also cell-free DNA. Fifty-five laboratories used both single nucleotide variants and indels for TMB calculation; 20 centers included only non-synonymous variants. In conclusion, the data from this survey indicate that multiple global laboratories were capable of rapidly introducing routine clinical TMB testing. However, the variability of testing methods raises concerns about the reproducibility of results among centers., (© 2021. The Author(s).)
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- 2021
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33. Challenges in bioinformatics approaches to tumor mutation burden analysis.
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Fenizia F, Pasquale R, Abate RE, Lambiase M, Roma C, Bergantino F, Chaudhury R, Hyland F, Allen C, and Normanno N
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Several immune checkpoint inhibitors (ICIs) have already been introduced into clinical practice or are in advanced phases of clinical experimentation. Extensive efforts are being made to identify robust biomarkers to select patients who may benefit from treatment with ICIs. Tumor mutation burden (TMB) may be a relevant biomarker of response to ICIs in different tumor types; however, its clinical use is challenged by the analytical methods required for its evaluation. The possibility of using targeted next-generation sequencing panels has been investigated as an alternative to the standard whole exome sequencing approach. However, no standardization exists in terms of genes covered, types of mutations included in the estimation of TMB, bioinformatics pipelines for data analysis, and cut-offs used to discriminate samples with high, intermediate or low TMB. Bioinformatics serve a relevant role in the analysis of targeted sequencing data and its standardization is essential to deliver a reliable test in clinical practice. In the present study, cultured and formalin-fixed, paraffin-embedded cell lines were analyzed using a commercial panel for TMB testing; the results were compared with data from the literature and public databases, demonstrating a good correlation. Additionally, the correlation between high tumor mutation burden and microsatellite instability was confirmed. The bioinformatics analyses were conducted using two different pipelines to highlight the challenges associated with the development of an appropriate analytical workflow., Competing Interests: NN has received speaker's fee and is on the advisory boards of the following companies: Astra-Zeneca, Bayer, Illumina, Incyte, MSD, Merck KgA, J&J, Qiagen, Roche, Thermo Fisher Scientific, Inc. CA, FH and RC are Thermo Fisher Scientific, Inc. employees. Thermo Fisher Scientific, Inc. is the supplier of the Oncomine Tumor Mutation Load assay used within the study. The other authors declare no competing interests., (Copyright: © Fenizia et al.)
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- 2021
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34. Validation of a Targeted Next-Generation Sequencing Panel for Tumor Mutation Burden Analysis: Results from the Onconetwork Immuno-Oncology Consortium.
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Fenizia F, Alborelli I, Costa JL, Vollbrecht C, Bellosillo B, Dinjens W, Endris V, Heydt C, Leonards K, Merkelback-Bruse S, Pfarr N, van Marion R, Allen C, Chaudhary R, Gottimukkala R, Hyland F, Wong-Ho E, Jermann P, Machado JC, Hummel M, Stenzinger A, and Normanno N
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- A549 Cells, Biomarkers, Tumor genetics, Colorectal Neoplasms pathology, DNA isolation & purification, DNA Mismatch Repair genetics, DNA Mutational Analysis methods, Data Accuracy, Humans, MCF-7 Cells, Reproducibility of Results, Colorectal Neoplasms genetics, DNA genetics, High-Throughput Nucleotide Sequencing methods, Microsatellite Instability, Tumor Burden genetics
- Abstract
Tumor mutation burden (TMB) is evaluated as a biomarker of response to immunotherapy. We present the efforts of the Onconetwork Immuno-Oncology Consortium to validate a commercial targeted sequencing test for TMB calculation. A three-phase study was designed to validate the Oncomine Tumor Mutational Load (OTML) assay at nine European laboratories. Phase 1 evaluated reproducibility and accuracy on seven control samples. In phase 2, six formalin-fixed, paraffin-embedded samples tested with FoundationOne were reanalyzed with the OTML panel to evaluate concordance and reproducibility. Phase 3 involved analysis of 90 colorectal cancer samples with known microsatellite instability (MSI) status to evaluate TMB and MSI association. High reproducibility of TMB was demonstrated among the sites in the first and second phases. Strong correlation was also detected between mean and expected TMB in phase 1 (r
2 = 0.998) and phase 2 (r2 = 0.96). Detection of actionable mutations was also confirmed. In colorectal cancer samples, the expected pattern of MSI-high/high-TMB and microsatellite stability/low-TMB was present, and gene signatures produced by the panel suggested the presence of a POLE mutation in two samples. The OTML panel demonstrated robustness and reproducibility for TMB evaluation. Results also suggest the possibility of using the panel for mutational signatures and variant detection. Collaborative efforts between academia and companies are crucial to accelerate the translation of new biomarkers into clinical research., (Copyright © 2021 Association for Molecular Pathology and American Society for Investigative Pathology. Published by Elsevier Inc. All rights reserved.)- Published
- 2021
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35. Racial Differences in Incident Genitourinary Cancer Cases Captured in the National Cancer Database.
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Wolff DT, Monaghan TF, Gordon DJ, Michelson KP, Jones T, Khargi R, Smith MT, Maffucci F, Kwun H, Suss NR, and Winer AG
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- Databases, Factual, Female, Humans, Incidence, Male, Race Factors, White People, Testicular Neoplasms epidemiology
- Abstract
Background and Objectives : The National Cancer Database (NCDB) captures nearly 70% of all new cancer diagnoses in the United States, but there exists significant variation in this capture rate based on primary tumor location and other patient demographic factors. Prostate cancer has the lowest coverage rate of all major cancers, and other genitourinary malignancies likewise fall below the average NCDB case coverage rate. We aimed to explore NCDB coverage rates for patients with genitourinary cancers as a function of race. Materials and Methods : We compared the incidence of cancer cases in the NCDB with contemporary United States Cancer Statistics data. Results : Across all malignancies, American Indian/Alaskan Natives subjects demonstrated the lowest capture rates, and Asian/Pacific Islander subjects exhibited the second-lowest capture rates. Between White and Black subjects, capture rates were significantly higher for White subjects overall and for prostate cancer and kidney cancer in White males, but significantly higher for bladder cancer in Black versus White females. No significant differences were observed in coverage rates for kidney cancer in females, bladder cancer in males, penile cancer, or testicular cancer in White versus Black patients. Conclusions : Differential access to Commission on Cancer-accredited treatment facilities for racial minorities with genitourinary cancer constitutes a unique avenue for health equity research.
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- 2021
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36. The future of "Retro" robotic partial nephrectomy.
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Strauss DM, Lee R, Maffucci F, Abbott D, Masic S, and Kutikov A
- Abstract
Partial nephrectomy (PN) is the gold standard treatment for appropriately selected renal masses. Recent surgical advancements and adoption of the robotic technique has led to greater adoption of nephron-sparing surgery. Robotic PN was initially described via the transperitoneal (TP) approach, however, retroperitoneal (RP) access is possible and in some cases more desirable. In the RP approach, the kidney is accessed from its posterior surface and the intraperitoneal space is avoided. The RP approach to PN has the benefit of avoiding intraperitoneal viscera and colonic mobilization in patients with extensive prior abdominal surgery. The technique also eliminates the need for renal unit rotation in patients with posterior tumors and affords access to masses directly posterior to the renal hilum. The RP and TP approach to PN have shown similar oncologic and perioperative outcomes. Several recent studies have reported shorter operative times and lengths of stay (LOS) with comparable warm ischemia times for the RP approach when compared to transperitoneal PN (tPN). Given the indispensable deliverables of this approach in select patients, robotic retroperitoneal PN (rPN) should be in the armamentarium of a versatile urologic kidney surgeon. This review describes the current state of rPN and compares the indications and outcomes of the TP and RP approaches., Competing Interests: Conflicts of Interest: All authors have completed the ICMJE uniform disclosure form (available at http://dx.doi.org/10.21037/tau.2019.12.09). The series “Controversies in Minimally Invasive Urologic Oncology” was commissioned by the editorial office without any funding or sponsorship. The authors have no other conflicts of interest to declare., (2021 Translational Andrology and Urology. All rights reserved.)
- Published
- 2021
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37. Biomarker testing in oncology - Requirements for organizing external quality assessment programs to improve the performance of laboratory testing: revision of an expert opinion paper on behalf of IQNPath ABSL.
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Dufraing K, Fenizia F, Torlakovic E, Wolstenholme N, Deans ZC, Rouleau E, Vyberg M, Parry S, Schuuring E, and Dequeker EMC
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- Consensus, Humans, Neoplasms pathology, Observer Variation, Predictive Value of Tests, Quality Control, Quality Improvement standards, Reproducibility of Results, Biomarkers, Tumor analysis, Biomarkers, Tumor genetics, Diagnostic Tests, Routine standards, Immunohistochemistry standards, In Situ Hybridization standards, Medical Oncology standards, Neoplasms chemistry, Neoplasms genetics, Quality Indicators, Health Care standards
- Abstract
In personalized medicine, predictive biomarker testing is the basis for an appropriate choice of therapy for patients with cancer. An important tool for laboratories to ensure accurate results is participation in external quality assurance (EQA) programs. Several providers offer predictive EQA programs for different cancer types, test methods, and sample types. In 2013, a guideline was published on the requirements for organizing high-quality EQA programs in molecular pathology. Now, after six years, steps were taken to further harmonize these EQA programs as an initiative by IQNPath ABSL, an umbrella organization founded by various EQA providers. This revision is based on current knowledge, adds recommendations for programs developed for predictive biomarkers by in situ methodologies (immunohistochemistry and in situ hybridization), and emphasized transparency and an evidence-based approach. In addition, this updated version also has the aim to give an overview of current practices from various EQA providers.
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- 2021
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38. Removal of a Steel Ring Causing Penile Strangulation Without the Use of Powered Tools or Sharp Blades.
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Weinstein CS, Sun N, Maffucci F, and Winer A
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- Adult, Humans, Male, Steel, Wounds and Injuries therapy, Penis injuries
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Penile strangulation is an uncommon urologic emergency that requires prompt evaluation and treatment to avoid disastrous consequences. Strangulation has been reported with objects ranging from hair tourniquets, to plastic rings, to iron rings. Strangulation with these devices can result in vascular congestion of the penis, swelling and eventual gangrene of the penis distal to the constricting device. We present a case report of a 43-year-old male who had a 2-day history of penile pain and swelling secondary to a metal ring constricting the proximal phallus. Ring removal was achieved with an orthopedic bolt cutter to cut the ring in two places, using a malleable retractor to act as a "backboard" to prevent iatrogenic injury to the penis., (Copyright © 2020 Elsevier Inc. All rights reserved.)
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- 2021
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39. Controversies in management of the bladder cuff at nephroureterectomy.
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Braun AE, Srivastava A, Maffucci F, and Kutikov A
- Abstract
Upper tract urothelial carcinoma (UTUC) accounts for roughly 5% of urothelial carcinomas. Historically, the gold standard for high-risk or bulky low-risk UTUC was an open radical nephroureterectomy with formal bladder cuff excision (BCE). The development of novel endoscopic, laparoscopic, and robotic techniques has transformed this operation, yet no level I evidence exists at present that demonstrates the superiority of one strategy over another. While new approaches to nephroureterectomy in the last decade have shifted the management paradigm to decrease the morbidity of surgery, controversy continues to surround the approach to the distal ureter and bladder cuff. Debate continues within the urologic community over which surgical approach is best when managing UTUC and how various approaches impact clinical outcomes such as intravesical recurrence, recurrence-free survival (RFS) and disease-specific mortality (DSM). When focusing on the existing treatment algorithm, key metrics of quality include (I) removal of the entire specimen en bloc , (II) minimizing the risk of tumor and urine spillage, (III) R0 resection, and (IV) water-tight closure allowing for early use of prophylactic intravesical chemotherapy. In the absence of robust evidence demonstrating a single superior approach, the urologic surgeon should base decisions on technical comfort and each patient's particular clinical circumstance., Competing Interests: Conflicts of Interest: All authors have completed the ICMJE uniform disclosure form (available at http://dx.doi.org/10.21037/tau.2020.01.17). The series “Upper-Tract Urothelial Carcinoma: Current State and Future Directions” was commissioned by the editorial office without any funding or sponsorship. The authors have no other conflicts of interest to declare., (2020 Translational Andrology and Urology. All rights reserved.)
- Published
- 2020
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40. Robotic Excision of Vaginal Remnant/Urethral Diverticulum for Relief of Urinary Symptoms Following Phalloplasty in Transgender Men.
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Cohen OD, Dy GW, Nolan IT, Maffucci F, Bluebond-Langner R, and Zhao LC
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- Adult, Female, Humans, Male, Middle Aged, Retrospective Studies, Diverticulum surgery, Penis surgery, Postoperative Complications surgery, Robotic Surgical Procedures, Sex Reassignment Surgery methods, Urethral Diseases surgery, Urination Disorders surgery, Vagina surgery
- Abstract
Objective: To describe the technique of robotic remnant vaginectomy/excision of urethral diverticulum in transmen and report postoperative outcomes., Materials and Methods: Between 2015 and 2018, 4 patients underwent robotic remnant vaginectomy/excision of urethral diverticulum for relief of urinary symptoms. Patients were of mean age 36 ± 10.1 years (range 26-50) at time of vaginal remnant excision, and were 26 ± 9.1 months (range 20-39) post-op following their primary vaginectomy and radial forearm free flap (n = 3) or anterolateral thigh (n = 1) phalloplasty. All had multiple urologic complications after primary phalloplasty, most commonly urinary retention (n = 4), urethral stricture (n = 3), fistula (n = 3), dribbling (n = 2), and obstruction (n = 2). Indication for revision was obstruction and retention (n =3 ) and/or dribbling (n = 2). In each case, the robotic transabdominal dissection freed remnant vaginal tissue from the adjacent bladder and rectum without injury to these structures. Concurrent first- or second-stage urethroplasty was performed in all cases at a more distal portion of the urethra using buccal mucosa, vaginal, or skin grafts. Intraoperative cystoscopy was used in each case to confirm complete resection and closure of the diverticulum., Results: At mean follow-up of 294 ± 125.6 days (range 106-412), no patients had persistence or recurrence of vaginal cavity/urethral diverticulum on cystoscopic follow-up. Of 3 patients who wished to ultimately stand to void, 2 were able to do so at follow-up., Conclusion: Robotic transabdominal approach to remnant vaginectomy/excision of urethral diverticulum allows for excision without opening the perineal closure for management of symptomatic remnant/diverticulum in transgender men after vaginectomy., (Copyright © 2019 Elsevier Inc. All rights reserved.)
- Published
- 2020
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41. Targeted sequencing analysis of cell-free DNA from metastatic non-small-cell lung cancer patients: clinical and biological implications.
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Pasquale R, Forgione L, Roma C, Fenizia F, Bergantino F, Rachiglio AM, De Luca A, Gallo M, Maiello MR, Palumbo G, Morabito A, Azzaro R, and Normanno N
- Abstract
Background: Sequencing artifacts, clonal hematopoietic mutations of indeterminate potential (CHIP) and tumor heterogeneity have been hypothesized to contribute to the low concordance between tissue and cell-free DNA (cfDNA) molecular profiling with targeted sequencing., Methods: We analyzed by targeted sequencing cfDNA from 30 healthy individuals, and cfDNA and matched tumor samples from 30 EGFR-mutant and 77 EGFR wild-type metastatic non-small-cell lung cancer (mNSCLC) patients. Discordant cases were solved by droplet digital PCR (ddPCR)., Results: By testing cfDNA from healthy donors, we developed an algorithm to recognize sequencing artifacts. Applying this method to cfDNA from mNSCLC patients, EGFR mutations were detected with a good sensitivity (76.7%) and specificity (97.4%). In contrast, sensitivity and specificity for KRAS variants were 61.5% and 93.8%, respectively. All EGFR and KRAS variants detected in plasma but not in tissue were confirmed by ddPCR, thus excluding sequencing artifacts. In a fraction of cases, KRAS mutations found in plasma samples were confirmed in tumor tissue suggesting tumor heterogeneity. KRAS variants were found to be more likely sub-clonal as compared with EGFR mutations, and a correlation between clonal origin and frequency of detection in plasma was found. In a case with both EGFR and KRAS variants in cfDNA, we could demonstrate the presence of the KRAS variant in tumor tissue associated with lack of response to tyrosine kinase inhibitors (TKIs)., Conclusions: Although sequencing artifacts can be identified in targeted sequencing of cfDNA, tumor heterogeneity and CHIP are likely to influence the concordance between plasma and tissue testing., Competing Interests: Conflicts of Interest: The authors have no conflicts of interest to declare., (2020 Translational Lung Cancer Research. All rights reserved.)
- Published
- 2020
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42. Genomic Profiling of KRAS/NRAS/BRAF/PIK3CA Wild-Type Metastatic Colorectal Cancer Patients Reveals Novel Mutations in Genes Potentially Associated with Resistance to Anti-EGFR Agents.
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Rachiglio AM, Lambiase M, Fenizia F, Roma C, Cardone C, Iannaccone A, De Luca A, Carotenuto M, Frezzetti D, Martinelli E, Maiello E, Ciardiello F, and Normanno N
- Abstract
Previous findings suggest that metastatic colorectal carcinoma (mCRC) patients with KRAS/NRAS/BRAF/PIK3CA wild-type (quadruple-wt) tumors are highly sensitive to anti-epidermal growth factor receptor (EGFR) monoclonal antibodies (MoAbs). However, additional molecular alterations might be involved in the de novo resistance to these drugs. We performed a comprehensive molecular profiling of 21 quadruple-wt tumors from mCRC patients enrolled in the "Cetuximab After Progression in KRAS wild-type colorectal cancer patients" (CAPRI-GOIM) trial of first line FOLFIRI plus cetuximab. Tumor samples were analyzed with a targeted sequencing panel covering single nucleotide variants (SNVs), insertions/deletions (Indels), copy number variations (CNVs), and gene fusions in 143 cancer-related genes. The analysis revealed in all 21 patients the presence of at least one SNV/Indel and in 10/21 cases (48%) the presence of at least one CNV. Furthermore, 17/21 (81%) patients had co-existing SNVs/Indels in different genes. Quadruple-wt mCRC from patients with the shorter progression free survival (PFS) were enriched with peculiar genetic alterations in KRAS , FBXW7 , MAP2K1 , and NF1 genes as compared with patients with longer PFS. These data suggest that a wide genetic profiling of quadruple-wt mCRC patients might help to identify novel markers of de novo resistance to anti-EGFR MoAbs.
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- 2019
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43. IQN path ASBL report from the first European cfDNA consensus meeting: expert opinion on the minimal requirements for clinical ctDNA testing.
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Deans ZC, Butler R, Cheetham M, Dequeker EMC, Fairley JA, Fenizia F, Hall JA, Keppens C, Normanno N, Schuuring E, and Patton SJ
- Subjects
- DNA Mutational Analysis methods, Expert Testimony methods, Humans, Mutation genetics, Neoplasms diagnosis, Cell-Free Nucleic Acids analysis, Circulating Tumor DNA analysis, Liquid Biopsy methods, Neoplasms pathology
- Abstract
Liquid biopsy testing is a new laboratory-based method that detects tumour mutations in circulating free DNA (cfDNA) derived from minimally invasive blood sampling techniques. Recognising the significance for clinical testing, in 2017, IQN Path provided external quality assessment for liquid biopsy testing. Representatives of those participating laboratories were invited to attend a workshop to discuss the findings and how to achieve quality implementation of cfDNA testing in the clinical setting, the discussion and outcomes of this consensus meeting are described below. Predictive molecular profiling using tumour tissue in order to select cancer patients eligible for targeted therapy is now routine in diagnostic pathology. If insufficient tumour tissue material is available, in some circumstances, recent European Medicines Agency (EMA) guidance recommends mutation testing with plasma cfDNA. Clinical applications of cfDNA include treatment selection based on clinically relevant mutations derived from pre-treatment samples and the detection of resistant mutations upon progression of the disease. In order to identify tumour-related mutations in amongst other nucleic acid material found in plasma samples, highly sensitive laboratory methods are needed. In the workshop, we discussed the variable approaches taken with regard to cfDNA extraction methods, the tests, and considered the impact of false-negative test results. We explored the lack of standardisation of complex testing procedures ranging from plasma collection, transport, processing and storage, cfDNA extraction, and mutation analysis, to interpretation and reporting of results. We will also address the current status of clinical validation and clinical utility, and its use in current diagnosis. This workshop revealed a need for guidelines on with standardised procedures for clinical cfDNA testing and reporting, and a requirement for cfDNA-based external quality assessment programs.
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- 2019
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44. The Presence of Concomitant Mutations Affects the Activity of EGFR Tyrosine Kinase Inhibitors in EGFR-Mutant Non-Small Cell Lung Cancer (NSCLC) Patients.
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Rachiglio AM, Fenizia F, Piccirillo MC, Galetta D, Crinò L, Vincenzi B, Barletta E, Pinto C, Ferraù F, Lambiase M, Montanino A, Roma C, Ludovini V, Montagna ES, De Luca A, Rocco G, Botti G, Perrone F, Morabito A, and Normanno N
- Abstract
Recent findings suggest that a fraction of EGFR-mutant non-small-cell lung cancers (NSCLC) carry additional driver mutations that could potentially affect the activity of EGFR tyrosine kinase inhibitors (TKIs). We investigated the role of concomitant KRAS, NRAS, BRAF, PIK3CA, MET and ERBB2 mutations (other mutations) on the outcome of 133 EGFR mutant patients, who received first-line therapy with EGFR TKIs between June 2008 and December 2014. Analysis of genomic DNA by Next Generation Sequencing (NGS) revealed the presence of hotspot mutations in genes other than the EGFR, including KRAS, NRAS, BRAF, ERBB2, PIK3CA, or MET, in 29/133 cases (21.8%). A p.T790M mutation was found in 9/133 tumour samples (6.8%). The progression free survival (PFS) of patients without other mutations was 11.3 months vs. 7 months in patients with other mutations (log-rank test univariate: p = 0.047). In a multivariate Cox regression model including the presence of other mutations, age, performance status, smoking status, and the presence of p.T790M mutations, the presence of other mutations was the only factor significantly associated with PFS (Hazard Ratio 1.63, 95% CI 1.04⁻2.58; p = 0.035). In contrast, no correlation was found between TP53 mutations and patients' outcome. These data suggest that a subgroup of EGFR mutant tumours have concomitant driver mutations that might affect the activity of first-line EGFR TKIs.
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- 2019
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45. The role of circulating free DNA in the management of NSCLC.
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Esposito Abate R, Pasquale R, Fenizia F, Rachiglio AM, Roma C, Bergantino F, Forgione L, Lambiase M, Sacco A, Piccirillo MC, Morabito A, and Normanno N
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- Biomarkers, Tumor genetics, Carcinoma, Non-Small-Cell Lung genetics, Early Detection of Cancer methods, Humans, Liquid Biopsy methods, Lung Neoplasms genetics, Prognosis, Sensitivity and Specificity, Carcinoma, Non-Small-Cell Lung diagnosis, Circulating Tumor DNA genetics, Lung Neoplasms diagnosis
- Abstract
Introduction: Circulating cell-free DNA (cfDNA) testing has emerged as an alternative to tumor tissue analyses for the management of metastatic non-small-cell lung cancer (NSCLC) patients. Analysis of cfDNA is a minimally invasive procedure that might better reflect tumor heterogeneity and allows repeated testing over the time. Areas covered: This review article covers the different applications of cfDNA testing in NSCLC: early diagnosis of the disease; detection of minimal residual disease in early lung cancer; identification of predictive and prognostic markers in advanced NSCLC patients; monitoring the response to therapy; assessment of tumor mutation burden. Expert commentary: The use of liquid biopsy is rapidly expanding to different applications. The combination of different circulating biomarkers (cfDNA, protein, miRNA) might improve the sensitivity and specificity of this approach in patients with low tumor burden. cfDNA testing is representing a valid source for molecular profiling in management of metastatic NSCLC patients and is providing important knowledge on tumor heterogeneity. Clinical trials are needed in order to transfer the information deriving from liquid biopsy testing in new therapeutic strategies.
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- 2019
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46. Measuring tumor mutation burden in non-small cell lung cancer: tissue versus liquid biopsy.
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Fenizia F, Pasquale R, Roma C, Bergantino F, Iannaccone A, and Normanno N
- Abstract
The introduction in the clinic of immune checkpoint inhibitors (IOs) has represented an important improvement for the treatment of patients with advanced non-small cell lung cancer (NSCLC). These drugs have shown a higher activity as compared with chemotherapy in both first- and second-line of treatment, with some patients experiencing a long-lasting response. More recently, combinations of IOs have entered clinical trials in different tumor types including NSCLC. Nevertheless, IOs are active only in a subgroup of patients and biomarkers for appropriate patients' selection are urgently needed to offer the patients an effective therapy, and also to manage the costs. Tumor mutation burden (TMB) has powerfully emerged as a potential biomarker for immunotherapy and might enter the clinic in the next months, although different challenges are still unsolved. Different methods exist to evaluate TMB in tissue, ranging from whole exome sequencing (WES) to targeted sequencing of smaller sets of genes, which need to be fully standardized to ensure that patients receive an appropriate TMB test with clear clinical interpretation. In addition, as already happened for the implementation of liquid biopsy testing from NSCLC patients to identify targetable alterations, researchers are also evaluating the possibility to calculate TMB in blood, to further enlarge the number of NSCLC patients who may benefit from immunotherapy. Preliminary data highlight the difficulty to develop targeted sequencing panels for the assessment of TMB starting from the circulating cell free DNA (cfDNA). The applicability of TMB testing on liquid biopsy needs further investigation and may be clarified within the ongoing clinical trials., Competing Interests: Conflicts of Interest: The authors have no conflicts of interest to declare.
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- 2018
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47. The Impact of Comorbid Mental Health Disorders on Complications Following Cervical Spine Surgery With Minimum 2-Year Surveillance.
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Diebo BG, Lavian JD, Liu S, Shah NV, Murray DP, Beyer GA, Segreto FA, Maffucci F, Poorman GW, Cherkalin D, Torre B, Vasquez-Montes D, Yoshihara H, Cukor D, Naziri Q, Passias PG, and Paulino CB
- Subjects
- Comorbidity, Female, Humans, Male, Middle Aged, New York epidemiology, Patient Readmission statistics & numerical data, Postoperative Complications epidemiology, Prevalence, Reoperation statistics & numerical data, Retrospective Studies, Time Factors, Treatment Outcome, Mental Disorders epidemiology, Population Surveillance, Radiculopathy epidemiology, Radiculopathy surgery, Spinal Cord Diseases epidemiology, Spinal Cord Diseases surgery, Spinal Fusion adverse effects
- Abstract
Study Design: Retrospective analysis., Objective: To improve understanding of the impact of comorbid mental health disorders (MHDs) on long-term outcomes following cervical spinal fusion in cervical radiculopathy (CR) or cervical myelopathy (CM) patients., Summary of Background Data: Subsets of patients with CR and CM have MHDs, and their impact on surgical complications is poorly understood., Methods: Patients admitted from 2009 to 2013 with CR or CM diagnoses who underwent cervical surgery with minimum 2-year surveillance were retrospectively reviewed using New York State's Statewide Planning and Research Cooperative System. Patients with a comorbid MHD were compared against those without (no-MHD). Univariate analysis compared demographics, complications, readmissions, and revisions between MHD and no-MHD cohorts. Multivariate binary logistic regression models identified independent predictors of outcomes (covariates: age, sex, Charlson/Deyo score, and surgical approach)., Results: A total of 20,342 patients (MHD: n = 4819; no-MHD: n = 15,523) were included. MHDs identified: depressive (57.8%), anxiety (28.1%), sleep (25.2%), and stress (2.9%). CR patients had greater prevalence of comorbid MHD than CM patients (P = 0.015). Two years postoperatively, all patients with MHD had significantly higher rates of complications (specifically: device-related, infection), readmission for any indication, and revision surgery (all P < 0.05); regression modeling corroborated these findings and revealed combined surgical approach as the strongest predictor for any complication (CR, odds ratio [OR]: 3.945, P < 0.001; CM, OR: 2.828, P < 0.001) and MHD as the strongest predictor for future revision (CR, OR: 1.269, P = 0.001; CM, OR: 1.248, P = 0.008) in both CR and CM cohorts., Conclusion: Nearly 25% of patients admitted for CR and CM carried comorbid MHD and experienced greater rates of any complication, readmission, or revision, at minimum, 2 years after cervical spine surgery. Results must be confirmed with retrospective studies utilizing larger national databases and with prospective cohort studies. Patient counseling and psychological screening/support are recommended to complement surgical treatment., Level of Evidence: 3.
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- 2018
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48. International pilot external quality assessment scheme for analysis and reporting of circulating tumour DNA.
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Keppens C, Dequeker EMC, Patton SJ, Normanno N, Fenizia F, Butler R, Cheetham M, Fairley JA, Williams H, Hall JA, Schuuring E, and Deans ZC
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- ErbB Receptors blood, Humans, Mutation, Neoplasms pathology, Proto-Oncogene Proteins p21(ras) blood, Cell-Free Nucleic Acids blood, Circulating Tumor DNA blood, Neoplasms blood, Quality Assurance, Health Care
- Abstract
Background: Molecular analysis of circulating tumour DNA (ctDNA) is becoming increasingly important in clinical treatment decisions. A pilot External Quality Assessment (EQA) scheme for ctDNA analysis was organized by four European EQA providers under the umbrella organization IQN Path, in order to investigate the feasibility of delivering an EQA to assess the detection of clinically relevant variants in plasma circulating cell-free DNA (cfDNA) and to analyze reporting formats., Methods: Thirty-two experienced laboratories received 5 samples for EGFR mutation analysis and/or 5 samples for KRAS and NRAS mutation analysis. Samples were artificially manufactured to contain 3 mL of human plasma with 20 ng/mL of fragmented ctDNA and variants at allelic frequencies of 1 and 5%., Results: The scheme error rate was 20.1%. Higher error rates were observed for RAS testing when compared to EGFR analysis, for allelic frequencies of 1% compared to 5%, and for cases including 2 different variants. The reports over-interpreted wild-type results and frequently failed to comment on the amount of cfDNA extracted., Conclusions: The pilot scheme demonstrated the feasibility of delivering a ctDNA EQA scheme and the need for such a scheme due to high error rates in detecting low frequency clinically relevant variants. Recommendations to improve reporting of cfDNA are provided.
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- 2018
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49. Detection of EGFR Variants in Plasma: A Multilaboratory Comparison of a Real-Time PCR EGFR Mutation Test in Europe.
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Keppens C, Palma JF, Das PM, Scudder S, Wen W, Normanno N, van Krieken JH, Sacco A, Fenizia F, Gonzalez de Castro D, Hönigschnabl S, Kern I, Lopez-Rios F, Lozano MD, Marchetti A, Halfon P, Schuuring E, Setinek U, Sorensen B, Taniere P, Tiemann M, Vosmikova H, and Dequeker EMC
- Subjects
- Algorithms, Bias, Circulating Tumor DNA blood, Circulating Tumor DNA genetics, ErbB Receptors blood, ErbB Receptors genetics, Europe, Gene Dosage, Humans, Models, Genetic, Sensitivity and Specificity, Mutation genetics, Real-Time Polymerase Chain Reaction methods
- Abstract
Molecular testing of EGFR is required to predict the response likelihood to targeted therapy in non-small cell lung cancer. Analysis of circulating tumor DNA in plasma may complement limitations of tumor tissue. This study evaluated the interlaboratory performance and reproducibility of a real-time PCR EGFR mutation test (cobas EGFR Mutation Test v2) to detect EGFR variants in plasma. Fourteen laboratories received two identical panels of 27 single-blinded plasma samples. Samples were wild type or spiked with plasmid DNA to contain seven common EGFR variants at six predefined concentrations from 50 to 5000 copies per milliliter. The circulating tumor DNA was extracted by a cell-free circulating DNA sample preparation kit (cobas cfDNA Sample Preparation Kit), followed by duplicate analysis with the real-time PCR EGFR mutation test (Roche Molecular Systems, Pleasanton, CA). Lowest sensitivities were obtained for the c.2156G>C p.(Gly719Ala) and c.2573T>G p.(Leu858Arg) variants for the lowest target copies. For all other variants, sensitivities varied between 96.3% and 100.0%. All specificities were 98.8% to 100.0%. Coefficients of variation indicated good intralaboratory and interlaboratory repeatability and reproducibility but increased for decreasing concentrations. Prediction models revealed a significant correlation for all variants between the predefined copy number and the observed semiquantitative index values, which reflect the samples' plasma mutation load. This study demonstrates an overall robust performance of the real-time PCR EGFR mutation test kit in plasma. Prediction models may be applied to estimate the plasma mutation load for diagnostic or research purposes., (Copyright © 2018 American Society for Investigative Pathology and the Association for Molecular Pathology. Published by Elsevier Inc. All rights reserved.)
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- 2018
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50. Phase III study with FOLFIRI + cetuximab versus FOLFIRI + cetuximab followed by cetuximab alone in RAS and BRAF WT mCRC.
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Pinto C, Normanno N, Orlandi A, Fenizia F, Damato A, Maiello E, Tamburini E, Di Costanzo F, Tonini G, Bilancia D, Corsi D, Pisconti S, Ferrau F, Gori S, Daniele B, Zaniboni A, Soto Parra H, Frassinetti GL, Iaffaioli RV, Cassata A, Zampino MG, Repetto L, Calegari MA, and Barone C
- Subjects
- Adult, Aged, Camptothecin therapeutic use, Colorectal Neoplasms genetics, Colorectal Neoplasms mortality, Colorectal Neoplasms pathology, DNA Mutational Analysis, Disease-Free Survival, ErbB Receptors antagonists & inhibitors, Female, Fluorouracil therapeutic use, Humans, Leucovorin therapeutic use, Male, Middle Aged, Mutation, Quality of Life, Treatment Outcome, Young Adult, Antineoplastic Combined Chemotherapy Protocols therapeutic use, Camptothecin analogs & derivatives, Cetuximab therapeutic use, Colorectal Neoplasms drug therapy, Proto-Oncogene Proteins B-raf genetics, Proto-Oncogene Proteins p21(ras) genetics
- Abstract
The optimal duration and intensity of first-line therapy in metastatic colorectal cancer patients once they have achieved an objective response is controversial. In a molecularly selected RAS and BRAF wild-type (wt) population, this concern is amplified. Once disease control has been achieved with a combination therapy including an anti-EGFR antibody, further exposure both to cytotoxic drugs and targeted therapy might result only in increased toxicity. In unresectable metastatic RAS and BRAF wt colorectal cancer patients, a deintensified therapy could represent a valuable option that might preserve quality of life. We designed a study to compare FOLFIRI/cetuximab to FOLFIRI/cetuximab for eight cycles followed by cetuximab alone in first-line treatment of RAS and BRAF (wt) metastatic colorectal cancer patients.
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- 2018
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