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2. Genomic history of human monkey pox infections in the Central African Republic between 2001 and 2018

Author

Berthet, Nicolas, Descorps-Declère, Stéphane, Besombes, Camille, Curaudeau, Manon, Nkili Meyong, Andriniaina Andy, Selekon, Benjamin, Labouba, Ingrid, Gonofio, Ella Cyrielle, Ouilibona, Rita Sem, Simo Tchetgna, Huguette Dorine, Feher, Maxence, Fontanet, Arnaud, Kazanji, Mirdad, Manuguerra, Jean-Claude, Hassanin, Alexandre, Gessain, Antoine, and Nakoune, Emmanuel

Published
2021
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3. Direct metagenomic and amplicon-based Nanopore sequencing of French human monkeypox from clinical specimen

Author

Kwasiborski, Aurelia, primary, Hourdel, Véronique, additional, Balière, Charlotte, additional, Hoinard, Damien, additional, Grassin, Quentin, additional, Feher, Maxence, additional, De La Porte Des Vaux, Clémentine, additional, Cresta, Mélanie, additional, Vanhomwegen, Jessica, additional, Manuguerra, Jean-Claude, additional, Batéjat, Christophe, additional, and Caro, Valérie, additional

Published
2024
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4. Complete Genome Sequences of Monkeypox Virus from a French Clinical Sample and the Corresponding Isolated Strain, Obtained Using Nanopore Sequencing

Author

Balière, Charlotte, primary, Hourdel, Véronique, additional, Kwasiborski, Aurelia, additional, Grassin, Quentin, additional, Feher, Maxence, additional, Hoinard, Damien, additional, Vanhomwegen, Jessica, additional, Taieb, Fabien, additional, Consigny, Paul-Henri, additional, Manuguerra, Jean-Claude, additional, Leclercq, India, additional, Batéjat, Christophe, additional, and Caro, Valérie, additional

Published
2023
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5. Heat inactivation of monkeypox virus

Author

Batéjat, Christophe, primary, Grassin, Quentin, additional, Feher, Maxence, additional, Hoinard, Damien, additional, Vanhomwegen, Jessica, additional, Manuguerra, Jean-Claude, additional, and Leclercq, India, additional

Published
2022
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6. Analytical framework to evaluate and optimize the use of imperfect diagnostics to inform outbreak response: Application to the 2017 plague epidemic in Madagascar

Author

ten Bosch, Quirine, primary, Andrianaivoarimanana, Voahangy, additional, Ramasindrazana, Beza, additional, Mikaty, Guillain, additional, Rakotonanahary, Rado J. L., additional, Nikolay, Birgit, additional, Rahajandraibe, Soloandry, additional, Feher, Maxence, additional, Grassin, Quentin, additional, Paireau, Juliette, additional, Rahelinirina, Soanandrasana, additional, Randremanana, Rindra, additional, Rakotoarimanana, Feno, additional, Melocco, Marie, additional, Rasolofo, Voahangy, additional, Pizarro-Cerdá, Javier, additional, Le Guern, Anne-Sophie, additional, Bertherat, Eric, additional, Ratsitorahina, Maherisoa, additional, Spiegel, André, additional, Baril, Laurence, additional, Rajerison, Minoarisoa, additional, and Cauchemez, Simon, additional

Published
2022
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7. Heat inactivation of the Monkeypoxvirus

Author

Batéjat, Christophe, primary, Grassin, Quentin, additional, Feher, Maxence, additional, Hoinard, Damien, additional, Vanhomwegen, Jessica, additional, Manuguerra, Jean-Claude, additional, and Leclercq, India, additional

Published
2022
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8. Analytical framework to evaluate and optimize the use of imperfect diagnostics to inform outbreak response : Application to the 2017 plague epidemic in Madagascar

Author

ten Bosch, Quirine, Andrianaivoarimanana, Voahangy, Ramasindrazana, Beza, Mikaty, Guillain, Rakotonanahary, Rado J.L., Nikolay, Birgit, Rahajandraibe, Soloandry, Feher, Maxence, Grassin, Quentin, Paireau, Juliette, Rahelinirina, Soanandrasana, Randremanana, Rindra, Rakotoarimanana, Feno, Melocco, Marie, Rasolofo, Voahangy, Pizarro-Cerdá, Javier, Le Guern, Anne Sophie, Bertherat, Eric, Ratsitorahina, Maherisoa, Spiegel, André, Baril, Laurence, Rajerison, Minoarisoa, Cauchemez, Simon, ten Bosch, Quirine, Andrianaivoarimanana, Voahangy, Ramasindrazana, Beza, Mikaty, Guillain, Rakotonanahary, Rado J.L., Nikolay, Birgit, Rahajandraibe, Soloandry, Feher, Maxence, Grassin, Quentin, Paireau, Juliette, Rahelinirina, Soanandrasana, Randremanana, Rindra, Rakotoarimanana, Feno, Melocco, Marie, Rasolofo, Voahangy, Pizarro-Cerdá, Javier, Le Guern, Anne Sophie, Bertherat, Eric, Ratsitorahina, Maherisoa, Spiegel, André, Baril, Laurence, Rajerison, Minoarisoa, and Cauchemez, Simon

Abstract

During outbreaks, the lack of diagnostic "gold standard" can mask the true burden of infection in the population and hamper the allocation of resources required for control. Here, we present an analytical framework to evaluate and optimize the use of diagnostics when multiple yet imperfect diagnostic tests are available. We apply it to laboratory results of 2,136 samples, analyzed with 3 diagnostic tests (based on up to 7 diagnostic outcomes), collected during the 2017 pneumonic (PP) and bubonic plague (BP) outbreak in Madagascar, which was unprecedented both in the number of notified cases, clinical presentation, and spatial distribution. The extent of these outbreaks has however remained unclear due to nonoptimal assays. Using latent class methods, we estimate that 7% to 15% of notified cases were Yersinia pestis-infected. Overreporting was highest during the peak of the outbreak and lowest in the rural settings endemic to Y. pestis. Molecular biology methods offered the best compromise between sensitivity and specificity. The specificity of the rapid diagnostic test was relatively low (PP: 82%, BP: 85%), particularly for use in contexts with large quantities of misclassified cases. Comparison with data from a subsequent seasonal Y. pestis outbreak in 2018 reveal better test performance (BP: specificity 99%, sensitivity: 91%), indicating that factors related to the response to a large, explosive outbreak may well have affected test performance. We used our framework to optimize the case classification and derive consolidated epidemic trends. Our approach may help reduce uncertainties in other outbreaks where diagnostics are imperfect.

Published
2022

9. Evaluating and optimizing the use of diagnostics during epidemics: Application to the 2017 plague outbreak in Madagascar

Author

Bosch, Quirine, primary, Andrianaivoarimanana, Voahangy, additional, Ramasindrazana, Beza, additional, Mikaty, Guillain, additional, Rakotonanahary, Rado JL, additional, Nikolay, Birgit, additional, Rahajandraibe, Soloandry, additional, Feher, Maxence, additional, Grassin, Quentin, additional, Paireau, Juliette, additional, Rahelinirina, Soanandrasana, additional, Randremanana, Rindra, additional, Rakotoarimanana, Feno, additional, Melocco, Marie, additional, Rasolofo, Voahangy, additional, Pizarro-Cerda, Javier, additional, Le Guern, Anne-Sophie, additional, Bertherat, Eric, additional, Ratsitorahina, Maherisoa, additional, Spiegel, Andre, additional, Baril, Laurence, additional, Rajerison, Minoarisoa, additional, and Cauchemez, Simon, additional

Published
2021
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