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Effective data management plays a key role in oceanographic research as cruise-based data, collected from different laboratories and expeditions, are commonly compiled to investigate regional to global oceanographic processes. Here we describe new and updated best practice data standards for discrete chemical oceanographic observations, specifically those dealing with column header abbreviations, quality control flags, missing value indicators, and standardized calculation of certain properties. These data standards have been developed with the goals of improving the current practices of the scientific community and promoting their international usage. These guidelines are intended to standardize data files for data sharing and submission into permanent archives. They will facilitate future quality control and synthesis efforts and lead to better data interpretation. In turn, this will promote research in ocean biogeochemistry, such as studies of carbon cycling and ocean acidification, on regional to global scales. These best practice standards are not mandatory. Agencies, institutes, universities, or research vessels can continue using different data standards if it is important for them to maintain historical consistency. However, it is hoped that they will be adopted as widely as possible to facilitate consistency and to achieve the goals stated above.

Assessing the vulnerability of marine invertebrates to ocean acidification (OA) requires an understanding of critical thresholds at which developmental, physiological, and behavioral traits are affected. To identify relevant thresholds for echinoderms, we undertook a three-step data synthesis, focused on California Current Ecosystem (CCE) species. First, literature characterizing echinoderm responses to OA was compiled, creating a dataset comprised of >12,000 datapoints from 41 studies. Analysis of this data set demonstrated responses related to physiology, behavior, growth and development, and increased mortality in the larval and adult stages to low pH exposure. Second, statistical analyses were conducted on selected pathways to identify OA thresholds specific to duration, taxa, and depth-related life stage. Exposure to reduced pH led to impaired responses across a range of physiology, behavior, growth and development, and mortality endpoints for both larval and adult stages. Third, through discussions and synthesis, the expert panel identified a set of eight duration-dependent, life stage, and habitat-dependent pH thresholds and assigned each a confidence score based on quantity and agreement of evidence. The thresholds for these effects ranged within pH from 7.20 to 7.74 and duration from 7 to 30 days, all of which were characterized with either medium or low confidence. These thresholds yielded a risk range from early warning to lethal impacts, providing the foundation for consistent interpretation of OA monitoring data or numerical ocean model simulations to support climate change marine vulnerability assessments and evaluation of ocean management strategies. As a demonstration, two echinoderm thresholds were applied to simulations of a CCE numerical model to visualize the effects of current state of pH conditions on potential habitat.

Global change is leading to warming, acidification, and oxygen loss in the ocean. In the Southern California Bight, an eastern boundary upwelling system, these stressors are exacerbated by the localized discharge of anthropogenically enhanced nutrients from a coastal population of 23 million people. Here, we use simulations with a high-resolution, physical-biogeochemical model to quantify the link between terrestrial and atmospheric nutrients, organic matter, and carbon inputs and biogeochemical change in the coastal waters of the Southern California Bight. The model is forced by large-scale climatic drivers and a reconstruction of local inputs via rivers, wastewater outfalls, and atmospheric deposition; it captures the fine scales of ocean circulation along the shelf; and it is validated against a large collection of physical and biogeochemical observations. Local land-based and atmospheric inputs, enhanced by anthropogenic sources, drive a 79% increase in phytoplankton biomass, a 23% increase in primary production, and a nearly 44% increase in subsurface respiration rates along the coast in summer, reshaping the biogeochemistry of the Southern California Bight. Seasonal reductions in subsurface oxygen, pH, and aragonite saturation state, by up to 50 mmol m-3, 0.09, and 0.47, respectively, rival or exceed the global open-ocean oxygen loss and acidification since the preindustrial period. The biological effects of these changes on local fisheries, proliferation of harmful algal blooms, water clarity, and submerged aquatic vegetation have yet to be fully explored.

Assessing decapod sensitivity to regional-scale ocean acidification (OA) conditions is limited because of a fragmented understanding of the thresholds at which they exhibit biological response. To address this need, we undertook a three-step data synthesis: first, we compiled a dataset composed of 27,000 datapoints from 55 studies of decapod responses to OA. Second, we used statistical threshold analyses to identify OA thresholds using pH as a proxy for 13 response pathways from physiology to behavior, growth, development and survival. Third, we worked with the panel of experts to review these thresholds, considering the contributing datasets based on quality of the study, and assign a final thresholds and associated confidence scores based on quality and consistency of findings among studies. The duration-dependent thresholds were within a pH range from 7.40 to 7.80, ranging from behavioral and physiological responses to mortality, with many of the thresholds being assigned medium-to-high confidence. Organism sensitivity increased with the duration of exposure but was not linked to a specific life-stage. The thresholds that emerge from our analyses provide the foundation for consistent interpretation of OA monitoring data or numerical ocean model simulations to support climate change marine vulnerability assessments and evaluation of ocean management strategies.

Syntheses of carbonate chemistry spatial patterns are important for predicting ocean acidification impacts, but are lacking in coastal oceans. Here, we show that along the North American Atlantic and Gulf coasts the meridional distributions of dissolved inorganic carbon (DIC) and carbonate mineral saturation state (Ω) are controlled by partial equilibrium with the atmosphere resulting in relatively low DIC and high Ω in warm southern waters and the opposite in cold northern waters. However, pH and the partial pressure of CO2 (pCO2) do not exhibit a simple spatial pattern and are controlled by local physical and net biological processes which impede equilibrium with the atmosphere. Along the Pacific coast, upwelling brings subsurface waters with low Ω and pH to the surface where net biological production works to raise their values. Different temperature sensitivities of carbonate properties and different timescales of influencing processes lead to contrasting property distributions within and among margins.

We analyzed impacts of the 2014–2015 Pacific Warm Anomaly and 2015–2016 El Niño on physical and biogeochemical variables at two southern California Current System moorings (CCE2, nearshore upwelling off Point Conception; CCE1, offshore California Current). Nitrate and Chl-a fluorescence were

A survey of marine pelagic coastal microbial communities was conducted over a large geographic latitude range, from Cape Mendocino in northern California USA to Queen Charlotte Sound in British Columbia Canada, during the spring to summer transition. DNA metabarcoding and flow cytometry were used to characterize microbial communities. Physical and chemical oceanography indicated moderate conditions during the survey with no widespread upwelling, marine heat wave, or other extreme conditions. However, four locations displayed features approaching acidified conditions: Heceta Head, Newport, Copalis Beach, and Cape Flattery. Although bacterial and archaeal communities at the Juan de Fuca canyon and northward had high similarity, those south of the Juan de Fuca canyon were well differentiated from each other. In contrast, eukaryotic microbial communities exhibited stronger geographic differentiation than bacterial and archaeal communities across the extent of the survey. Seawater parameters that were best predictors of bacterial and archaeal community structure were temperature, pH, and dissolved inorganic nutrients (nitrate, phosphate, silicate), while those that were best predictors of eukaryotic microbial community structure were salinity, dissolved oxygen, total alkalinity, and dissolved inorganic nutrients (nitrite, silicate). Although five bacterial and archaeal indicators for potentially corrosive waters were identified (Colwellia, Nitrosopumilus, Nitrosopelagicus, Sup05 cluster, Sva0996 marine group), no eukaryotic microbial indicators were found. Potentially pathogenic taxa detected in the survey included four disease-causing bacteria for mammals, finfish, and/or shellfish (Coxiella, Flavobacterium, Francisella, Tenacibaculum), sixteen genera of microalgae capable of producing biotoxins, and fifteen parasitic species. This study demonstrates the value of coordinating microbial sampling and analysis with broad-scale oceanographic surveys to generate insights into community structures of these important pelagic trophic levels. [ABSTRACT FROM AUTHOR]

The temperature range of Earth's open‐ocean waters is roughly 0–30°C, yet our understanding of the seawater carbon dioxide (CO2) system is largely derived from analyses conducted within a narrow temperature range (e.g., laboratory temperature of 20°C or 25°C). Herein, we address two aspects of open‐ocean CO2‐system measurements and modeling: (1) a highly precise spectrophotometric technique is used to determine bicarbonate dissociation constants (K2) in seawater at temperatures as low as 3°C and (2) a cruise dataset uniquely including total scale pH measurements at two temperatures is used for CO2‐system internal consistency comparisons at 12°C and 25°C. Our pK2 parameterization (where pK = −log K) is applicable for broad ranges of salinity (20 ≤ SP ≤ 40) and temperature (3°C ≤ t ≤ 35°C). Our CO2‐system internal consistency evaluation (comparison of measured and calculated CO2‐system parameters) utilized data obtained during NOAA's 2021 West Coast Ocean Acidification Cruise: total alkalinity (TA), total dissolved inorganic carbon (DIC), pH measured at 25°C, and pH measured at 12°C (n = 265). Results demonstrate that, relative to calculations utilizing the TA, DIC pair, agreement between measured and calculated parameters is improved when either TA or DIC is paired with pH measurements at either temperature. Calculations of CO2 fugacity (fCO2) and aragonite saturation state (Ωar) using pH measurements made at 25°C or 12°C (paired with either TA or DIC) are statistically indistinguishable. Results also suggest that the temperature dependence of current CO2‐system dissociation constants need further refinement. [ABSTRACT FROM AUTHOR]

Climatologies, which depict mean fields of oceanographic variables on a regular geographic grid, and atlases, which provide graphical depictions of specific areas, play pivotal roles in comprehending the societal vulnerabilities linked to ocean acidification (OA). This significance is particularly pronounced in coastal regions where most economic activities, such as commercial and recreational fisheries and aquaculture industries, occur. In this paper, we unveil a comprehensive data product featuring coastal ocean acidification climatologies and atlases, encompassing the fugacity of carbon dioxide, pH on the total scale, total hydrogen ion content, free hydrogen ion content, carbonate ion content, aragonite saturation state, calcite saturation state, Revelle factor, total dissolved inorganic carbon content, and total alkalinity content. These variables are provided on 1° × 1° spatial grids at 14 standardized depth levels, ranging from the surface to a depth of 500 m, along the North American ocean margins, defined as the region between the coastline and a distance of 200 nautical miles (∼370 km) offshore. The climatologies and atlases were developed using the World Ocean Atlas (WOA) gridding methods of the NOAA National Centers for Environmental Information (NCEI) based on the recently released Coastal Ocean Data Analysis Product in North America (CODAP-NA), along with the 2021 update to the Global Ocean Data Analysis Project version 2 (GLODAPv2.2021) data product. The relevant variables were adjusted to the index year of 2010. The data product is available in NetCDF (https://doi.org/10.25921/g8pb-zy76 , Jiang et al., 2022b) on the NOAA Ocean Carbon and Acidification Data System: https://www.ncei.noaa.gov/data/oceans/ncei/ocads/metadata/0270962.html (last access: 15 July 2024). It is recommended to use the objectively analyzed mean fields (with "_an" suffix) for each variable. The atlases can be accessed at https://www.ncei.noaa.gov/access/ocean-carbon-acidification-data-system/synthesis/nacoastal.html (last access: 15 July 2024). [ABSTRACT FROM AUTHOR]

Ocean alkalinity enhancement (OAE), one of the marine carbon dioxide removal strategies, is gaining importance in its role towards alleviating the consequences of climate change as well as mitigating against ocean acidification (OA). OAE is based on adding alkalinity to open-ocean and coastal marine systems through a variety of different approaches, which raises carbonate chemistry parameters (such as pH, total alkalinity, aragonite saturation state), and enhances the uptake of carbon dioxide (CO2) from the atmosphere. There are large uncertainties in both short- and long-term outcomes related to potential environmental impacts, which would ultimately decide on the success of OAE as a climate strategy. This paper represents a meta-analyses effort, leveraging on the OA studies, data, observed patterns and generalizable responses. We propose a conceptual framework of categorized responses that are predicted under OAE implementation. The synthesis was done using raw experimental OA data based on 96 collected studies, capturing the responses of eleven biological groups (coralline algae, corals, dinoflagellates, mollusks, gastropods, pteropods, coccolithophores, annelids, crustacean, echinoderms, and foraminifera), using regression analyses to predict biological responses and thresholds to NaOH or Na2CO3 concentrations. Predicted responses were categorized into six different categories (linear positive and negative, threshold positive and negative, parabolic and neutral) to delineate species- and group-specific responders: 40 % of species are predicted to respond positively (N=38), 20 % of species negatively (N=20), and 40 % (N=38) were found to demonstrate a neutral response upon alkalinity addition. For negatively impacted species, biological thresholds corresponding to 10 to 500 µmol/kg NaOH addition were found, occurring at much lower values than previously expected. Such lower threshold values represent realistic conditions related to OAE field deployments but contrast with the conditions where current OAE lab experiments are conducted. We thus explicitly emphasize the importance of including much lower additions of alkalinity in experimental trials to realistically evaluate in situ biological responses. Due to practicality and high correlation with Ωar, we propose using the TA:DIC ratio as a helpful proxy to explore regional applications and biological response to OAE. The ultimate goal of the study is to provide a framework that can serve as a tool for predicting biological responses and thresholds to delineate OAE risks, guide and prioritize future OAE biological research and regional OAE monitoring efforts. With 60 % of species showing non-neutral response, a precautionary approach for OAE implementation is warranted, identifying the conditions where potential negative ecological outcomes could happen, which is key for scaling up while also avoiding potential risks. [ABSTRACT FROM AUTHOR]

Coastal and estuarine ecosystems fringing the North Pacific Ocean are particularly vulnerable to ocean acidification, hypoxia, and intense marine heatwaves as a result of interactions among natural and anthropogenic processes. Here, we characterize variability during a seasonally resolved cruise time series (2014–2018) in the southern Salish Sea (Puget Sound, Strait of Juan de Fuca) and nearby coastal waters for select physical (temperature, T ; salinity, S) and biogeochemical (oxygen, O 2 ; carbon dioxide fugacity, f CO 2 ; aragonite saturation state, Ωarag) parameters. Medians for some parameters peaked (T , Ωarag) in surface waters in summer, whereas others (S , O 2 , f CO 2) changed progressively across spring–fall, and all parameters changed monotonically or were relatively stable at depth. Ranges varied considerably for all parameters across basins within the study region, with stratified basins consistently the most variable. Strong environmental anomalies occurred during the time series, allowing us to also qualitatively assess how these anomalies affected seasonal patterns and interannual variability. The peak temperature anomaly associated with the 2013–2016 northeast Pacific marine heatwave–El Niño event was observed in boundary waters during the October 2014 cruise, but Puget Sound cruises revealed the largest temperature increases during the 2015–2016 timeframe. The most extreme hypoxia and acidification measurements to date were recorded in Hood Canal (which consistently had the most extreme conditions) during the same period; however, they were shifted earlier in the year relative to previous events. During autumn 2017, after the heat anomaly, a distinct carbonate system anomaly with unprecedentedly low Ωarag values and high f CO 2 values occurred in parts of the southern Salish Sea that are not normally so acidified. This novel "CO 2 storm" appears to have been driven by anomalously high river discharge earlier in 2017, which resulted in enhanced stratification and inferred primary productivity anomalies, indicated by persistently and anomalously high O 2 , low f CO 2 , and high chlorophyll. Unusually, this CO 2 anomaly was decoupled from O 2 dynamics compared with past Salish Sea hypoxia and acidification events. The complex interplay of weather, hydrological, and circulation anomalies revealed distinct multi-stressor scenarios that will potentially affect regional ecosystems under a changing climate. Further, the frequencies at which Salish cruise observations crossed known or preliminary species' sensitivity thresholds illustrates the relative risk landscape of temperature, hypoxia, and acidification anomalies in the southern Salish Sea in the present day, with implications for how multiple stressors may combine to present potential migration, survival, or physiological challenges to key regional species. The Salish cruise data product used in this publication is available at https://doi.org/10.25921/zgk5-ep63 (Alin et al., 2022), with an additional data product including all calculated CO 2 system parameters available at https://doi.org/10.25921/5g29-q841 (Alin et al., 2023). [ABSTRACT FROM AUTHOR]

Climatologies, which depict mean fields of oceanographic variables on a regular geographic grid, and atlases, which provide graphical depictions of specific areas, play pivotal roles in comprehending the societal vulnerabilities linked to ocean acidification (OA). This significance is particularly pronounced in coastal regions where most economic activities related to commercial and recreational fisheries as well as aquaculture industries occur. In this paper, we unveil a comprehensive data product featuring coastal climatologies and atlases for ten OA indicators, including fugacity of carbon dioxide, pH on the total scale, total hydrogen ion content, free hydrogen ion content, carbonate ion content, aragonite saturation state, calcite saturation state, Revelle Factor, total dissolved inorganic carbon content, and total alkalinity content. These indicators are provided on 1°×1° degree spatial grids at 14 standardized depth levels, ranging from the surface to a depth of 500 meters, along the North American ocean margins – defined as the region between the coastline and a distance of 200 nautical miles (∼370 km) offshore. The climatologies and atlases were developed using the World Ocean Atlas (WOA) gridding methods of the NOAA National Centers for Environmental Information (NCEI), based on the recently released Coastal Ocean Data Analysis Product in North America (CODAP-NA), along with the 2021 update to the Global Ocean Data Analysis Project version 2 (GLODAPv2.2021) data product. The relevant variables were adjusted to the index year of 2010. The data product is available in NetCDF (DOI: 10.25921/g8pb-zy76) at the NOAA Ocean Carbon and Acidification Data System: https://www.ncei.noaa.gov/data/oceans/ncei/ocads/metadata/0270962.html. It is recommended to use the objectively analyzed mean fields (with '_an' suffix) for each variable. The atlases can be accessed at: https://www.ncei.noaa.gov/access/ocean-carbon-acidification-data-system/synthesis/nacoastal.html. [ABSTRACT FROM AUTHOR]

Coastal and estuarine waters of the northern California Current system and southern Salish Sea host an observational network capable of characterizing biogeochemical dynamics related to ocean acidification, hypoxia, and marine heatwaves. Here, we compiled data sets from a set of cruises conducted in estuarine waters of Puget Sound (southern Salish Sea) and its boundary waters (Strait of Juan de Fuca and Washington coast). This data product provides data from a decade of cruises with consistent formatting, extended data quality control, and multiple units for parameters such as oxygen with different end use needs and conventions. All cruises obtained high-quality temperature, salinity, inorganic carbon, nutrient, and oxygen observations to provide insight into the dynamic distribution of physical and biogeochemical conditions in this large urban estuary complex on the west coast of North America. At all sampling stations, conductivity–temperature–depth (CTD) casts included sensors for measuring temperature, conductivity, pressure, and oxygen concentrations. Laboratory analyses of discrete water samples collected at all stations throughout the water column in Niskin bottles provided measurements of dissolved inorganic carbon (DIC), dissolved oxygen, nutrient (nitrate, nitrite, ammonium, phosphate, and silicate), and total alkalinity (TA) content. This data product includes observations from 35 research cruises, including 715 oceanographic profiles, with >7490 sensor measurements of temperature, salinity, and oxygen; ≥6070 measurements of discrete oxygen and nutrient samples; and ≥4462 measurements of inorganic carbon variables (i.e., DIC and TA). The observations comprising this cruise compilation collectively characterize the spatial and temporal variability in a region with large dynamic ranges of the physical (temperature = 6.0–21.8 ∘ C, salinity = 15.6–34.0) and biogeochemical (oxygen = 12–481 µmolkg-1 , dissolved inorganic carbon = 1074–2362 µmolkg-1 , total alkalinity = 1274–2296 µmolkg-1) parameters central to understanding ocean acidification and hypoxia in this productive estuary system with numerous interacting human impacts on its ecosystems. All observations conform to the climate-quality observing guidelines of the Global Ocean Acidification Observing Network, the US National Oceanic and Atmospheric Administration's Ocean Acidification Program, and ocean carbon community best practices. This ongoing cruise time series supports the estuarine and coastal monitoring and research objectives of the Washington Ocean Acidification Center and US National Oceanic and Atmospheric Administration (NOAA) Ocean and Atmospheric Research programs, and it provides diverse end users with the information needed to frame biological impacts research, validate numerical models, inform state and tribal water quality and fisheries management, and support decision-makers. All 2008–2018 cruise time-series measurements used in this publication are available at 10.25921/zgk5-ep63 (Alin et al., 2022). [ABSTRACT FROM AUTHOR]

Event-scale phenomena, of limited temporal duration or restricted spatial extent, often play a disproportionately large role in ecological processes occurring in the ocean water column. Nutrient and gas fluxes, upwelling and downwelling, transport of biogeochemically important elements, predator-prey interactions, and other processes may be markedly influenced by such events, which are inadequately resolved from infrequent ship surveys. The advent of autonomous instrumentation, including underwater gliders, profiling floats, surface drifters, enhanced moorings, coastal high-frequency radars, and satellite remote sensing, now provides the capability to resolve such phenomena and assess their role in structuring pelagic ecosystems. These methods are especially valuable when integrated together, and with shipboard calibration measurements and experimental programs. © 2013 by The Oceanography Society. All rights reserved.

The California Current System (CCS) is expected to experience the ecological impacts of ocean acidification (OA) earlier than most other ocean regions because coastal upwelling brings old, CO2-rich water relatively close to the surface ocean. Historical inorganic carbon measurements are scarce, so the progression of OA in the CCS is unknown. We used a multiple linear regression approach to generate empirical models using oxygen (O 2), temperature (T), salinity (S), and sigma theta (sq) as proxy variables to reconstruct pH, carbonate saturation states, carbonate ion concentration ([CO32-]), dissolved inorganic carbon (DIC) concentration, and total alkalinity (TA) in the southern CCS. The calibration data included high-quality measurements of carbon, oxygen, and other hydrographic variables, collected during a cruise from British Columbia to Baja California in May-June 2007. All resulting empirical relationships were robust, with r2 values >0.92 and low root mean square errors. Estimated and measured carbon chemistry matched very well for independent data sets from the CalCOFI and IMECOCAL programs. Reconstructed CCS pH and saturation states for 2005-2011 reveal a pronounced seasonal cycle and inter-annual variability in the upper water column. Deeper in the water column, conditions are stable throughout the annual cycle, with perennially low pH and saturation states. Over sub-decadal time scales, these empirical models provide a valuable tool for reconstructing carbonate chemistry related to ocean acidification where direct observations are limited. However, progressive increases in anthropogenic CO2 content of southern CCS water masses must be carefully addressed to apply the models over longer time scales. © Copyright 2012 by the American Geophysical Union.