22 results on '"Federica Panebianco"'
Search Results
2. GATA3 and MDM2 are synthetic lethal in estrogen receptor-positive breast cancers
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Gaia Bianco, Mairene Coto-Llerena, John Gallon, Venkatesh Kancherla, Stephanie Taha-Mehlitz, Mattia Marinucci, Martina Konantz, Sumana Srivatsa, Hesam Montazeri, Federica Panebianco, Vijaya G. Tirunagaru, Marta De Menna, Viola Paradiso, Caner Ercan, Ahmed Dahmani, Elodie Montaudon, Niko Beerenwinkel, Marianna Kruithof-de Julio, Luigi M. Terracciano, Claudia Lengerke, Rinath M. Jeselsohn, Robert C. Doebele, François-Clément Bidard, Elisabetta Marangoni, Charlotte K. Y. Ng, and Salvatore Piscuoglio
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Biology (General) ,QH301-705.5 - Abstract
GATA3 mutations are common in ER-positive breast cancers yet are not targetable. This study describes pharmacological inhibition of MDM2 as a novel approach to target GATA3 deficiency, providing a molecularly guided treatment for this patient subclass associated with a worse prognosis and relapse.
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- 2022
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3. Standardizing Patient-Derived Organoid Generation Workflow to Avoid Microbial Contamination From Colorectal Cancer Tissues
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Mattia Marinucci, Caner Ercan, Stephanie Taha-Mehlitz, Lana Fourie, Federica Panebianco, Gaia Bianco, John Gallon, Sebastian Staubli, Savas D. Soysal, Andreas Zettl, Stephan Rauthe, Jürg Vosbeck, Raoul A. Droeser, Martin Bolli, Ralph Peterli, Markus von Flüe, Charlotte K. Y. Ng, Otto Kollmar, Mairene Coto-Llerena, and Salvatore Piscuoglio
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patient-derived organoids ,colorectal cancer ,Primocin ,antibiotics ,microbial contamination control ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
The use of patient-derived organoids (PDO) as a valuable alternative to in vivo models significantly increased over the last years in cancer research. The ability of PDOs to genetically resemble tumor heterogeneity makes them a powerful tool for personalized drug screening. Despite the extensive optimization of protocols for the generation of PDOs from colorectal tissue, there is still a lack of standardization of tissue handling prior to processing, leading to microbial contamination of the organoid culture. Here, using a cohort of 16 patients diagnosed with colorectal carcinoma (CRC), we aimed to test the efficacy of phosphate-buffered saline (PBS), penicillin/streptomycin (P/S), and Primocin, alone or in combination, in preventing organoid cultures contamination when used in washing steps prior to tissue processing. Each CRC tissue was divided into 5 tissue pieces, and treated with each different washing solution, or none. After the washing steps, all samples were processed for organoid generation following the same standard protocol. We detected contamination in 62.5% of the non-washed samples, while the use of PBS or P/S-containing PBS reduced the contamination rate to 50% and 25%, respectively. Notably, none of the organoid cultures washed with PBS/Primocin-containing solution were contaminated. Interestingly, addition of P/S to the washing solution reduced the percentage of living cells compared to Primocin. Taken together, our results demonstrate that, prior to tissue processing, adding Primocin to the tissue washing solution is able to eliminate the risk of microbial contamination in PDO cultures, and that the use of P/S negatively impacts organoids growth. We believe that our easy-to-apply protocol might help increase the success rate of organoid generation from CRC patients.
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- 2022
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4. Spectrum of TERT promoter mutations and mechanisms of activation in thyroid cancer
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Federica Panebianco, Alyaksandr V. Nikitski, Marina N. Nikiforova, and Yuri E. Nikiforov
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copy number change ,promoter activity ,promoter mutation ,TERT activation ,thyroid cancer ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Reactivation of telomerase reverse transcriptase (TERT) is an important event in cancer. Two hotspot mutations in the TERT promoter region, c.‐124C > T (C228T) and c.‐146C > T (C250T), occur in various cancer types including thyroid cancer. They generate de novo binding sites for E‐twenty‐six (ETS) transcription factors causing increased TERT transcription. The aim of this study was to search for novel TERT promoter mutations and additional mechanisms of TERT activation in thyroid cancer. Methods We studied 198 papillary thyroid carcinomas (PTCs), 34 follicular thyroid carcinomas (FTCs), 40 Hürthle cell carcinomas (HCCs), 14 poorly differentiated/anaplastic thyroid carcinomas (PDTC/ATC), and 15 medullary thyroid carcinomas (MTCs) for mutations in an −424 bp to +64 bp region of TERT. The luciferase reporter assay was used to functionally characterize the identified alterations. Copy number variations (CNVs) in the TERT region were analyzed using TaqMan copy number assay and validated with fluorescence in situ hybridization (FISH). Results We detected the hotspot c.‐124C > T and c.‐146C > T mutations in 7% PTC, 18% FTC, 25% HCC, and 86% PDTC/ATC. One PTC carried a c.‐124C > A mutation. Furthermore, we identified two novel mutations resulting in the formation of de novo ETS‐binding motifs: c.‐332C > T in one MTC and c.‐104_‐83dup in one PTC. These genetic alterations, as well as other detected mutations, led to a significant increase in TERT promoter activity when assayed using luciferase reporter system. In addition, 5% of thyroid tumors were found to have ≥3 copies of TERT. Conclusions This study confirms the increased prevalence of TERT promoter mutations and CNV in advanced thyroid cancers and describes novel functional alterations in the TERT gene promoter, including a point mutation and small duplication. These mutations, as well as TERT copy number alterations, may represent an additional mechanism of TERT activation in thyroid cancer.
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- 2019
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5. Author Correction: GATA3 and MDM2 are synthetic lethal in estrogen receptor-positive breast cancers
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Gaia Bianco, Mairene Coto-Llerena, John Gallon, Venkatesh Kancherla, Stephanie Taha-Mehlitz, Mattia Marinucci, Martina Konantz, Sumana Srivatsa, Hesam Montazeri, Federica Panebianco, Vijaya G. Tirunagaru, Marta De Menna, Viola Paradiso, Caner Ercan, Ahmed Dahmani, Elodie Montaudon, Niko Beerenwinkel, Marianna Kruithof-de Julio, Luigi M. Terracciano, Claudia Lengerke, Rinath M. Jeselsohn, Robert C. Doebele, François-Clément Bidard, Elisabetta Marangoni, Charlotte K. Y. Ng, and Salvatore Piscuoglio
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Biology (General) ,QH301-705.5 - Published
- 2022
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6. Loss of c-KIT expression in thyroid cancer cells.
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Sara Franceschi, Francesca Lessi, Federica Panebianco, Elena Tantillo, Marco La Ferla, Michele Menicagli, Paolo Aretini, Alessandro Apollo, Antonio Giuseppe Naccarato, Ivo Marchetti, and Chiara Maria Mazzanti
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Medicine ,Science - Abstract
Papillary thyroid carcinoma is the most frequent histologic type of thyroid tumor. Few studies investigated the role of c-KIT expression in thyroid tumors, suggesting a role for this receptor and its ligand in differentiation and growth control of thyroid epithelium and a receptor loss following malignant transformation. We investigated and correlated c-KIT expression levels and two known markers of thyrocytes differentiation, PAX8 and TTF-1, in malignant and benign cytological thyroid samples. Moreover, we performed functional studies on human papillary thyroid carcinoma cell line to associated c-KIT expression to thyrocytes differentiation and tumor proliferation. c-KIT and PAX8 expression resulted higher in benign samples compared to the malignant ones, and the expression levels of these two genes were significantly correlated to each other. We also observed that c-KIT overexpression led to an increase of PAX8 expression level together with a decrease of proliferation. Furthermore, c-KIT overexpressing cells showed a regression of typical morphological features of malignancy. Taken together these results suggest that c-KIT could be involved in the differentiation of thyroid cells and in tumor progression.
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- 2017
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7. Characterization of thyroid cancer driven by known and novel ALK fusions
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Cihan Kaya, Alyaksandr V. Nikitski, Vincenzo Condello, Marina N. Nikiforova, Abigail I. Wald, Simion I. Chiosea, Yuri E. Nikiforov, Federica Panebianco, and Linwah Yip
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Adult ,Male ,0301 basic medicine ,Thyroid nodules ,Cancer Research ,Pathology ,medicine.medical_specialty ,endocrine system diseases ,Adolescent ,Endocrinology, Diabetes and Metabolism ,medicine.medical_treatment ,Biopsy, Fine-Needle ,Thyroid Gland ,Cell Cycle Proteins ,Nerve Tissue Proteins ,Malignancy ,Article ,Thyroid carcinoma ,Surgical pathology ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,hemic and lymphatic diseases ,Humans ,Medicine ,Anaplastic Lymphoma Kinase ,Thyroid Neoplasms ,Child ,Thyroid cancer ,Aged ,business.industry ,Serine Endopeptidases ,Thyroid ,Membrane Proteins ,Cancer ,Neck dissection ,Middle Aged ,medicine.disease ,030104 developmental biology ,medicine.anatomical_structure ,Oncology ,Thyroid Cancer, Papillary ,030220 oncology & carcinogenesis ,Calmodulin-Binding Proteins ,Female ,Gene Fusion ,business ,Microtubule-Associated Proteins - Abstract
ALK fusions are found in various tumors, including thyroid cancer, and serve as a diagnostic marker and therapeutic target. Spectrum and outcomes of ALK fusions found in thyroid nodules and cancer are not fully characterized. We report a series of 44 ALK-translocated thyroid neoplasms, including 31 identified preoperatively in thyroid fine-needle aspirates (FNA). The average patients’ age was 43 years (range, 8–76 years); only one with radiation history. All 19 resected thyroid nodules with ALK fusion identified preoperatively were malignant. Among nodules with known surgical pathology (n = 32), 84% were papillary thyroid carcinomas (PTCs) and 16% poorly differentiated thyroid carcinomas (PDTCs). PTCs showed infiltrative growth with follicular architecture seen exclusively (30%) or in combination with papillary and/or solid growth (37%). Tumor multifocality was seen in 10 (31%) PTC cases. Most PDTC had a well-differentiated PTC component. Lymph node metastases were identified in 10/18 (56%) patients with neck dissection. The most common ALK fusion partners were STRN (n = 22) and EML4 (n = 17). In five cases, novel ALK fusion partners were discovered. All five PDTCs carried STRN-ALK fusion. On follow-up, ten patients were free of disease at 2–108 months, whereas two patients with PDTC died of disease. In summary, ALK fusion-positive thyroid carcinomas are typically infiltrative PTC with common follicular growth, which may show tumor dedifferentiation associated with increased mortality. Compared to EML4-ALK, STRN-ALK may be more common in PDTC, and ~10% of ALK fusions occur to rare gene partners. When ALK fusion is detected preoperatively in FNA samples, malignancy should be expected.
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- 2019
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8. Mouse Model of Thyroid Cancer Progression and Dedifferentiation Driven by STRN-ALK Expression and Loss of p53: Evidence for the Existence of Two Types of Poorly Differentiated Carcinoma
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Alyaksandr V. Nikitski, Susan L. Rominski, Mamta Wankhede, Yuri E. Nikiforov, Daniel L. Altschuler, Federica Panebianco, Cihan Kaya, Hong Yang, and Vincenzo Condello
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endocrine system ,endocrine system diseases ,business.industry ,Endocrinology, Diabetes and Metabolism ,Thyroid ,Poorly differentiated carcinoma ,Cancer ,030209 endocrinology & metabolism ,medicine.disease ,Anaplastic thyroid carcinoma ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,medicine.anatomical_structure ,Poorly Differentiated Thyroid Carcinoma ,Tumor progression ,030220 oncology & carcinogenesis ,medicine ,Cancer research ,business ,Thyroid cancer - Abstract
Background: Thyroid tumor progression from well-differentiated cancer to poorly differentiated thyroid carcinoma (PDTC) and anaplastic thyroid carcinoma (ATC) involves step-wise dedifferentiation a...
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- 2019
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9. Spectrum of TERT promoter mutations and mechanisms of activation in thyroid cancer
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Marina N. Nikiforova, Yuri E. Nikiforov, Alyaksandr V. Nikitski, and Federica Panebianco
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0301 basic medicine ,Cancer Research ,DNA Copy Number Variations ,endocrine system diseases ,TERT activation ,promoter mutation ,promoter activity ,lcsh:RC254-282 ,Cell Line ,Thyroid carcinoma ,03 medical and health sciences ,0302 clinical medicine ,Gene duplication ,medicine ,thyroid cancer ,Humans ,Radiology, Nuclear Medicine and imaging ,Telomerase reverse transcriptase ,Thyroid Neoplasms ,Promoter Regions, Genetic ,Thyroid cancer ,Telomerase ,Original Research ,medicine.diagnostic_test ,Chemistry ,Point mutation ,Thyroid ,Clinical Cancer Research ,HCCS ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Molecular biology ,copy number change ,3. Good health ,030104 developmental biology ,medicine.anatomical_structure ,Oncology ,030220 oncology & carcinogenesis ,Mutation ,Fluorescence in situ hybridization - Abstract
Background Reactivation of telomerase reverse transcriptase (TERT) is an important event in cancer. Two hotspot mutations in the TERT promoter region, c.‐124C > T (C228T) and c.‐146C > T (C250T), occur in various cancer types including thyroid cancer. They generate de novo binding sites for E‐twenty‐six (ETS) transcription factors causing increased TERT transcription. The aim of this study was to search for novel TERT promoter mutations and additional mechanisms of TERT activation in thyroid cancer. Methods We studied 198 papillary thyroid carcinomas (PTCs), 34 follicular thyroid carcinomas (FTCs), 40 Hürthle cell carcinomas (HCCs), 14 poorly differentiated/anaplastic thyroid carcinomas (PDTC/ATC), and 15 medullary thyroid carcinomas (MTCs) for mutations in an −424 bp to +64 bp region of TERT. The luciferase reporter assay was used to functionally characterize the identified alterations. Copy number variations (CNVs) in the TERT region were analyzed using TaqMan copy number assay and validated with fluorescence in situ hybridization (FISH). Results We detected the hotspot c.‐124C > T and c.‐146C > T mutations in 7% PTC, 18% FTC, 25% HCC, and 86% PDTC/ATC. One PTC carried a c.‐124C > A mutation. Furthermore, we identified two novel mutations resulting in the formation of de novo ETS‐binding motifs: c.‐332C > T in one MTC and c.‐104_‐83dup in one PTC. These genetic alterations, as well as other detected mutations, led to a significant increase in TERT promoter activity when assayed using luciferase reporter system. In addition, 5% of thyroid tumors were found to have ≥3 copies of TERT. Conclusions This study confirms the increased prevalence of TERT promoter mutations and CNV in advanced thyroid cancers and describes novel functional alterations in the TERT gene promoter, including a point mutation and small duplication. These mutations, as well as TERT copy number alterations, may represent an additional mechanism of TERT activation in thyroid cancer., Novel alterations in TERT promoter, including single‐nucleotide variants and duplications, lead to increased TERT promoter activity, highlighting additional mechanisms of TERT activation in thyroid cancer.
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- 2019
10. GLIS Rearrangement is a Genomic Hallmark of Hyalinizing Trabecular Tumor of the Thyroid Gland
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Cihan Kaya, Lucas Santana-Santos, Sally E. Carty, Abigail I. Wald, Marina N. Nikiforova, Robert L. Ferris, Simion I. Chiosea, Alyaksandr V. Nikitski, Linwah Yip, Adel K. El-Naggar, Vincenzo Condello, Raja R. Seethala, Yuri E. Nikiforov, Somak Roy, Federica Panebianco, and Michelle A. Williams
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Adult ,Male ,Pathology ,medicine.medical_specialty ,genetic structures ,Endocrinology, Diabetes and Metabolism ,Biopsy, Fine-Needle ,Thyroid Gland ,030209 endocrinology & metabolism ,medicine.disease_cause ,Lesion ,PAX8 Transcription Factor ,Special Article ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,mental disorders ,Humans ,Medicine ,Exome ,False Positive Reactions ,Thyroid Neoplasms ,Hyaline ,Thyroid neoplasm ,Aged ,Retrospective Studies ,Aged, 80 and over ,Gene Rearrangement ,Sequence Analysis, RNA ,business.industry ,Hyalinizing Trabecular Tumor ,Thyroid ,High-Throughput Nucleotide Sequencing ,Genomics ,Middle Aged ,Immunohistochemistry ,DNA-Binding Proteins ,Repressor Proteins ,medicine.anatomical_structure ,Thyroid Cancer, Papillary ,030220 oncology & carcinogenesis ,Mutation ,Trans-Activators ,Female ,sense organs ,medicine.symptom ,business ,Genome-Wide Association Study - Abstract
Background: Hyalinizing trabecular tumor (HTT) is a rare thyroid neoplasm with a characteristic trabecular growth pattern and hyalinization. This lesion has been the subject of long-term controversy surrounding its genetic mechanisms, relationship to papillary thyroid carcinoma (PTC), and malignant potential. Due to the presence of nuclear features shared with PTC, HTT frequently contributes to a false-positive cytology, which hampers patient management. The goal of this study was to apply genome-wide sequencing analyses to elucidate the genetic mechanisms of HTT and its relationship to PTC. Methods: Whole-exome, RNA-Seq, and targeted next-generation sequencing analyses were performed to discover and characterize driver mutations in HTT. RNA-Seq results were used for pathway analysis. Tissue expression of GLIS3 and other proteins was detected by immunohistochemistry. The prevalence of GLIS fusions was studied in 17 tumors initially diagnosed as HTT, 220 PTC, and 10,165 thyroid fine-needle aspiration samples. Results: Using whole-exome and RNA-Seq analyses of the initial three HTT, no known thyroid tumor mutations were identified, while in-frame gene fusion between PAX8 exon 2 and GLIS3 exon 3 was detected in all tumors. Further analysis identified PAX8–GLIS3 in 13/14 (93%) and PAX8–GLIS1 in 1/14 (7%) of HTT confirmed after blind pathology review. The fusions were validated by Sanger sequencing and FISH. The fusions resulted in overexpression of the 3′-portion of GLIS3 and GLIS1 mRNA containing intact DNA-binding domains of these transcription factors and upregulation of extracellular matrix genes including collagen IV. Immunohistochemistry confirmed upregulation and deposition of collagen IV and pan-collagen in HTT. The analysis of 220 PTC revealed no PAX8–GLIS3 and one PAX8–GLIS1 fusion. PAX8–GLIS3 was prospectively identified in 8/10,165 (0.1%) indeterminate cytology fine-needle aspiration samples; 5/5 resected fusion-positive nodules were HTT on surgical pathology. Conclusions: This study demonstrates that GLIS rearrangements, particularly PAX8–GLIS3, are highly prevalent in HTT but not in PTC. The fusions lead to overexpression of GLIS, upregulation of extracellular matrix genes, and deposition of collagens, which is a characteristic histopathologic feature of HTT. Due to unique genetic mechanisms and an indolent behavior, it is proposed to rename this tumor as “GLIS-rearranged hyalinizing trabecular adenoma.”
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- 2019
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11. Abstract 3984: GATA3 and MDM2 are synthetic lethal in estrogen receptor-positive breast cancers
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Mattia Marinucci, Gaia Bianco, Mairene Coto-Llierena, John Gallon, Venkatesh Kancherla, Federica Panebianco, Stephanie Taha-Mehlitz, Sumana Srivatsa, Niko Beerenwinkel, Hesam Montazeri, Vijaya Tirunagaru, Marta De Menna, Caner Ercan, Ahmed Dahmani, Elodie Montaudon, Marianna Kruithof-de Julio, Luigi M. Terracciano, Rinath M. Jeselsohn, Robert C. Doebele, François-Clément Bidard, Elisabetta Marangoni, Charlotte K. Y. Ng, and Salvatore Piscuoglio
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Cancer Research ,Oncology - Abstract
Introduction: GATA3 is critical for the development of the mammary gland and the loss of its expression alters the estrogen receptor (ER) transcriptional program. Approximately 70%-80% of all breast cancers are ER-positive and 15-18% of them harbor GATA3 somatic mutations. Clinically, GATA3 loss defines a subset of patients with poor response to hormonal therapy and poor prognosis. As a transcription factor, however, GATA3 is not pharmacologically targetable. Synthetic lethality refers to the interaction between genetic events in two genes whereby the inactivation of either gene results in a viable phenotype, while their combined inactivation is lethal. This approach enables the indirect targeting of undruggable genes by disrupting their genetic interactors. In this study we sought to define Synthetic lethal partners for GATA3 and explore possible therapeutic targets Methods: Putative synthetic lethal partners for GATA3 were identified using the recently developed SLIdR (Synthetic Lethal Identification in R) algorithm. The synthetic lethal interaction and the anti-tumoral effect of putative partner was evaluated via genetic silencing or pharmacological inhibition using in-vitro, ex-vivo and in-vivo models. Putative mechanisms of action were investigate using RNA sequencing and confirmed using molecular biology technologies. Results: We identify MDM2 as synthetically lethal partner of GATA3 in ER-positive breast cancer. Using a siRNA approach, we first validated in-silico data by confirming that silencing MDM2 significantly reduces cell proliferation of GATA3-mutant in-vitro models by inducing apoptosis. Pharmacological inhibition of MDM2 using three different compounds (RG7388-idasanutlin, RAIN-32 and MI-733) significantly impaired tumor growth in GATA3-deficient models in vitro, in vivo and in patient-derived organoid/xenograft (PDO/PDX) harboring GATA3 somatic mutation. Additionally, we showed that the synthetic lethality between GATA3 and MDM2 is p53-dependent and acts at least partially via the PI3K/Akt/mTOR pathway. This suggests that GATA3 loss-of-function (via genetic alterations or other mechanisms) activates the PI3K/Akt/mTOR pathway and leads to resistance to apoptosis. Conclusion: Our results present MDM2 as a novel therapeutic target in the substantial cohort of ER-positive, GATA3-mutant breast cancer patients. With MDM2 inhibitors widely available, our findings can be rapidly translated into clinical trials to evaluate in-patient efficacy. Citation Format: Mattia Marinucci, Gaia Bianco, Mairene Coto-Llierena, John Gallon, Venkatesh Kancherla, Federica Panebianco, Stephanie Taha-Mehlitz, Sumana Srivatsa, Niko Beerenwinkel, Hesam Montazeri, Vijaya Tirunagaru, Marta De Menna, Caner Ercan, Ahmed Dahmani, Elodie Montaudon, Marianna Kruithof-de Julio, Luigi M. Terracciano, Rinath M. Jeselsohn, Robert C. Doebele, François-Clément Bidard, Elisabetta Marangoni, Charlotte K. Y. Ng, Salvatore Piscuoglio. GATA3 and MDM2 are synthetic lethal in estrogen receptor-positive breast cancers [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2022; 2022 Apr 8-13. Philadelphia (PA): AACR; Cancer Res 2022;82(12_Suppl):Abstract nr 3984.
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- 2022
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12. Abstract 3074: (Phospho)proteomics profiling of patient-derived colon cancer organoids for the discovery of putative drug targets
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Gina Faye Boot, Federica Panebianco, John Gallon, Charlotte Kiu Yan Ng, and Salvatore Piscuoglio
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Cancer Research ,Oncology - Abstract
Introduction: Colorectal cancer is the second cause of cancer related deaths worldwide, with the poor survival outcomes attributable to the presence of metastases. To tackle this problem, (phospho)proteomics analysis enables valuable insights into changes of protein expression and signalling in cancer that can be perturbed by drugs. To study mechanisms driving metastasis and perform subsequent drug testing, patient derived organoids (PDOs) are in development as preclinical models. PDOs are obtained by 3D culture of tumour tissue ex-vivo, which enables them to retain the heterogeneity and architecture of the tumor source. To identify putative drug targets for colon cancer metastasis, we performed comparative (phospho)proteomics analysis of metastatic colon tissues and their matched PDOs. Methods: (Phospho)proteomics profiling was performed on PDOs generated from 10 patients with colon metastases to the liver, 10 matched tumour tissues and 4 normal colon mucosa. Unsupervised analysis of the (phospho)proteomic landscape was used to identify differentially expressed genes and pathways in colon metastases and their matched PDOs, compared to normal colon mucosa. We focused on phosphosites, proteins and pathways showing consistently altered expression in tumour tissues and PDOs. Kinase-substrate enrichment analysis was used to identify aberrantly activated kinases, based on the abundance of phosphorylation on the substrates. Putative drugs were selected using the consensus expression response to multiple small molecule drugs across cell lines and conditions from the Library of Integrated Network-Based Cellular Signatures (LINCS) database. Drug treatment of drug candidates was performed using the MTT Cell Proliferation Assay. Results: Using the approach described above we identified 103 differentially expressed proteins and 236 phosphosites between tumour tissues and normals, which were also detected in PDOs, with overall high correlation of t statistics (0.6 Spearman’s rho) between tumor tissues and PDOs. MYC-targets, G2M checkpoints and E2F-targets were amongst the top positively enriched pathways in common, and the LINCS analysis identified multi-kinase inhibitor Nintedanib and NFKB pathway-targeting KIN0-260 as putative drugs for upregulated proteins. The kinase CSNK2A1 was overactivated in both groups, pointing towards the use of CK2 inhibitors for drug testing. Treatment at 5 days with Nintedanib and KIN001-260 on the PDOs resulted in significant reduction of cell viability compared with 5-FU. Conclusion: Our study provides evidence that PDOs recapitulate relevant tumor features at the proteomic and phosphoproteomic levels, supporting the utility of this ex-vivo model as a tool for drug sensitivity testing for metastatic colon cancer. Citation Format: Gina Faye Boot, Federica Panebianco, John Gallon, Charlotte Kiu Yan Ng, Salvatore Piscuoglio. (Phospho)proteomics profiling of patient-derived colon cancer organoids for the discovery of putative drug targets [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2022; 2022 Apr 8-13. Philadelphia (PA): AACR; Cancer Res 2022;82(12_Suppl):Abstract nr 3074.
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- 2022
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13. Adenylosuccinate lyase is oncogenic in colorectal cancer by causing mitochondrial dysfunction and independent activation of NRF2 and mTOR-MYC-axis
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Martin Bolli, Venkatesh Kancherla, Mairene Coto-Llerena, Otto Kollmar, Federica Panebianco, L. Terracciano, Salvatore Piscuoglio, Glenn R. Bantug, Sebastian Manuel Staubli, Marco von Strauss, Charlotte K.Y. Ng, John Gallon, Gaia Bianco, Savas D. Soysal, Caner Ercan, Stephanie Taha-Mehlitz, Matthias S. Matter, Serenella Eppenberger-Castori, Ralph Peterli, and Markus von Flüe
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0301 basic medicine ,DNA repair ,Carcinogenesis ,NF-E2-Related Factor 2 ,mTOR-MYC-axis ,Cell Respiration ,Medicine (miscellaneous) ,610 Medicine & health ,colorectal cancer ,Mitochondrion ,Biology ,medicine.disease_cause ,Proto-Oncogene Proteins c-myc ,03 medical and health sciences ,0302 clinical medicine ,Cell Movement ,Cell Line, Tumor ,medicine ,Humans ,Adenylosuccinate lyase ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,PI3K/AKT/mTOR pathway ,Cell Proliferation ,fumarate ,Oncogene ,Cell growth ,TOR Serine-Threonine Kinases ,Adenylosuccinate Lyase ,Oncogenes ,Cell cycle ,Mitochondria ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,030220 oncology & carcinogenesis ,ADSL ,Cancer research ,Caco-2 Cells ,Colorectal Neoplasms ,HT29 Cells ,Research Paper - Abstract
Rationale: Adenylosuccinate lyase (ADSL) is an essential enzyme for de novo purine biosynthesis. Here we sought to investigate the putative role of ADSL in colorectal carcinoma (CRC) carcinogenesis and response to antimetabolites. Methods: ADSL expression levels were assessed by immunohistochemistry or retrieved from The Cancer Genome Atlas (TCGA) dataset. The effects of ADSL silencing or overexpression were evaluated on CRC cell proliferation, cell migration and cell-cycle. In vivo tumor growth was assessed by the chicken chorioallantoic membrane (CAM). Transfected cell lines or patient-derived organoids (PDO) were treated with 5-fluorouracil (5-FU) and 6-mercaptopurine (6-MP) and drug response was correlated with ADSL expression levels. Metabolomic and transcriptomic profiling were performed to identify dysregulated pathways and ADSL downstream effectors. Mitochondrial respiration and glycolytic capacity were measured using Seahorse; mitochondrial membrane potential and the accumulation of ROS were measured by FACS using MitoTracker Red and MitoSOX staining, respectively. Activation of canonical pathways was assessed by immunohistochemistry and immunoblotting. Results: ADSL expression is significantly increased in CRC tumors compared to non-tumor tissue. ADSL-high CRCs show upregulation of genes involved in DNA synthesis, DNA repair and cell cycle. Accordingly, ADSL overexpression accelerated progression through the cell cycle and significantly increased proliferation and migration in CRC cell lines. Additionally, ADSL expression increased tumor growth in vivo and sensitized CRCs to 6-MP in vitro, ex vivo (PDOs) and in vivo (CAM model). ADSL exerts its oncogenic function by affecting mitochondrial function via alteration of the TCA cycle and impairment of mitochondrial respiration. The KEAP1-NRF2 and mTORC1-cMyc axis are independently activated upon ADSL overexpression and may favor the survival and proliferation of ROS-accumulating cells, favoring DNA damage and tumorigenesis. Conclusions: Our results suggest that ADSL is a novel oncogene in CRC, modulating mitochondrial function, metabolism and oxidative stress, thus promoting cell cycle progression, proliferation and migration. Our results also suggest that ADSL is a predictive biomarker of response to 6-mercaptopurine in the pre-clinical setting.
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- 2020
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14. GATA3 and MDM2 are synthetic lethal in estrogen receptor-positive breast cancers
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Charlotte K.Y. Ng, Federica Panebianco, Viola Paradiso, Venkatesh Kancherla, Elodie Montaudon, Sumana Srivatsa, John Gallon, Elisabetta Marangoni, Salvatore Piscuoglio, Stephanie Taha-Mehlitz, Gaia Bianco, Marianna Kruithof-de Julio, Niko Beerenwinkel, Ahmed Dahmani, Rinath Jeselsohn, Martina Konantz, Marta De Menna, Claudia Lengerke, François-Clément Bidard, Luigi Terracciano, Hesam Montazeri, Mairene Coto-Llerena, and Caner Ercan
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Germline mutation ,Breast cancer ,business.industry ,GATA3 ,Cancer research ,medicine ,Estrogen receptor ,Hormonal therapy ,Cancer ,Synthetic lethality ,medicine.disease ,business ,PI3K/AKT/mTOR pathway - Abstract
SummarySynthetic lethal interactions, where the simultaneous but not individual inactivation of two genes is lethal to the cell, have been successfully exploited to treat cancer.GATA3is frequently mutated in estrogen receptor (ER)-positive breast cancers and its deficiency defines a subset of patients with poor response to hormonal therapy and poor prognosis. However, GATA3 is not targetable. Here we show thatGATA3andMDM2are synthetically lethal in ER-positive breast cancer. Depletion and pharmacological inhibition of MDM2 induce apoptosis inGATA3-deficient modelsin vitro, in vivoand in patient-derived organoids (PDOs) harboringGATA3somatic mutation. The synthetic lethality requires p53 and acts via the PI3K/Akt/mTOR pathway. Our results present MDM2 as a novel therapeutic target in the substantial cohort of ER-positive,GATA3-mutant breast cancer patients. With MDM2 inhibitors widely available, our findings can be rapidly translated into clinical trials to evaluate in-patient efficacy.
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- 2020
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15. Mouse Model of Poorly Differentiated Thyroid Carcinoma Driven by STRN-ALK Fusion
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Guillermo Barila, Yuri E. Nikiforov, Federica Panebianco, Alyaksandr V. Nikitski, Susan L. Rominski, Daniel L. Altschuler, Lindsey M. Kelly, and Mamta Wankhede
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0301 basic medicine ,Genetically modified mouse ,endocrine system ,Oncogene Proteins, Fusion ,endocrine system diseases ,medicine.medical_treatment ,Mice, Transgenic ,Nerve Tissue Proteins ,Adenocarcinoma ,Biology ,Article ,Pathology and Forensic Medicine ,Papillary thyroid cancer ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Poorly Differentiated Thyroid Carcinoma ,hemic and lymphatic diseases ,medicine ,Animals ,Anaplastic lymphoma kinase ,Anaplastic Lymphoma Kinase ,Thyroid Neoplasms ,Goitrogen ,Thyroid cancer ,Thyroid ,Membrane Proteins ,Cell Differentiation ,medicine.disease ,Disease Models, Animal ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Cancer research ,Calmodulin-Binding Proteins ,Thyroglobulin - Abstract
Chromosomal rearrangements of the ALK gene, which lead to constitutive activation of ALK tyrosine kinase, are found in various cancers. In thyroid cancers, ALK fusions, most commonly the STRN-ALK fusion, are detected in papillary thyroid cancer and with higher frequency in poorly differentiated and anaplastic thyroid cancers. Our aim was to establish a mouse model of thyroid-specific expression of STRN-ALK and to test whether this fusion drives the development of thyroid cancer with a propensity for dedifferentiation. Transgenic Tg-STRN-ALK mice with thyroglobulin-controlled expression of STRN-ALK were generated and aged with or without goitrogen treatment. Thyroids from these mice were subjected to histologic and immunohistochemical analysis. Transgenic mice with thyroid-specific expression of STRN-ALK developed poorly differentiated thyroid tumors by the age of 12 months in 22% of mice without goitrogen treatment and in 36% of mice with goitrogen treatment. Histologically and immunohistochemically, the tumors resembled poorly differentiated thyroid cancers in humans, demonstrating a solid growth pattern with sheets of round or spindle-shaped cells, decreased expression of thyroglobulin, and a tendency to lose E-cadherin. In this study, we report a novel mouse model of poorly differentiated thyroid cancer driven by the STRN-ALK oncogene with phenotypic features closely recapitulating human tumor, and with a more pronounced phenotype after additional thyroid-stimulating hormone stimulation.
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- 2018
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16. Characterization of Activating Mutations of the MEK1 Gene in Papillary Thyroid Carcinomas
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Nicla Borrelli, Federica Panebianco, Vincenzo Condello, Linwah Yip, Justine A. Barletta, Cihan Kaya, Marina N. Nikiforova, and Yuri E. Nikiforov
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MAPK/ERK pathway ,Adult ,Male ,Proto-Oncogene Proteins B-raf ,endocrine system diseases ,MAP Kinase Signaling System ,Endocrinology, Diabetes and Metabolism ,MAP Kinase Kinase 1 ,030209 endocrinology & metabolism ,Biology ,Papillary thyroid cancer ,Thyroid carcinoma ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,medicine ,Humans ,Thyroid Neoplasms ,Protein kinase A ,Thyroid cancer ,Gene ,Aged ,Thyroid Cancer and Nodules ,medicine.disease ,Thyroid Cancer, Papillary ,030220 oncology & carcinogenesis ,Mutation ,Cancer research ,Female ,Signal transduction - Abstract
Background: Genetic alterations activating the mitogen-activated protein kinase (MAPK) signaling pathway, most commonly BRAF and RAS mutations, are common in papillary thyroid carcinoma (PTC). Somatic mutations of the MEK gene, also known as mitogen-activated protein kinase kinase 1 (MAP2K1), coding for a signaling protein downstream of BRAF, have been found in several cancer types. The goal of this study was to investigate if functional MEK1 mutations occur in thyroid cancer (TC). Methods: We analyzed MEK1 mutation status in a series of 101 PTCs lacking other known driver mutations using Sanger sequencing and targeted next-generation sequencing. In addition, 64 follicular and Hürthle cell carcinomas and 32 follicular adenomas were studied. The occurrence of MEK1 mutations was evaluated using another series of thyroid tumors studied by targeted next-generation sequencing. Western blot and RNA-seq analyses were performed on selected tumors. Results: We detected MEK1 mutations in 2/101 (2%) PTCs that otherwise had no known genetic alterations, in 0/64 follicular and Hürthle cell carcinomas, and in 0/32 follicular adenomas. Two positive tumors carried the same in-frame deletion p.L98_I103del; K104I (c.292_309del18; c.311A>T) located in exon 3 of the gene. One additional MEK1 mutation was identified following routine molecular tumor profiling. The tumor had an in-frame deletion p.I99_K104del (c.294_311del18) also located in exon 3. Western blot analysis of one of the tumors showed activation of the MAPK pathway. Using RNA-seq analysis to evaluate changes in gene expression, these tumors were RAS-like and showed a high thyroid differentiation score. Phenotypically, the MEK1-positive PTCs were all encapsulated and had a predominantly or exclusively follicular architecture, being diagnosed as a classic papillary type with a significant follicular pattern ( × 2) or follicular variant PTC ( × 1). Follow-up was available for 2 patients, with no evidence of disease found 2 and 10 years postsurgery. Conclusions: In this study, we report the occurrence of functional MEK1 mutations in PTC. All mutations are in-frame deletions in exon 3 of MEK1, representing another mechanism of activation of the MAPK pathway in papillary carcinomas with a predominantly follicular growth pattern.
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- 2019
17. Prevalence and phenotypic correlations of EIF1AX mutations in thyroid nodules
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Jennie Vorhauer, Simion I. Chiosea, Susan J Hsiao, Marina N. Nikiforova, Yuri E. Nikiforov, Arivarasan Karunamurthy, and Federica Panebianco
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Adenoma ,0301 basic medicine ,Thyroid nodules ,Cancer Research ,Pathology ,medicine.medical_specialty ,endocrine system diseases ,Endocrinology, Diabetes and Metabolism ,Biopsy, Fine-Needle ,EIF1AX ,Eukaryotic Initiation Factor-1 ,Biology ,Article ,Thyroid carcinoma ,03 medical and health sciences ,Exon ,0302 clinical medicine ,Endocrinology ,medicine ,Carcinoma ,Humans ,splice ,Thyroid Neoplasms ,Thyroid Nodule ,Thyroid ,medicine.disease ,Phenotype ,030104 developmental biology ,medicine.anatomical_structure ,Oncology ,030220 oncology & carcinogenesis ,Mutation - Abstract
TheEIF1AXgene mutations have been recently found in papillary thyroid carcinoma (PTC) and anaplastic thyroid carcinoma (ATC). The prevalence of these mutations in other types of thyroid cancers and benign nodules is unknown. In this study, we analyzed the occurrence ofEIF1AXmutations in exons 2, 5, and 6 of the gene in a series of 266 thyroid tumors and hyperplastic nodules by either Sanger or next-generation sequencing (ThyroSeq v.2). In addition, 647 thyroid fine-needle aspiration (FNA) samples with indeterminate cytology were analyzed. Using surgically removed samples,EIF1AXmutations were detected in 3/86 (2.3%) PTC, 1/4 (25%) ATC, 0/53 follicular carcinomas, 0/12 medullary carcinomas, 2/27 (7.4%) follicular adenomas, and 1/80 (1.3%) hyperplastic nodules. Among five mutation-positive FNA samples with surgical follow-up, one nodule was PTC and others were benign follicular adenomas or hyperplastic nodules. Overall, among 33 mutations identified, A113_splice mutation at the intron 5/exon 6 splice site ofEIF1AXwas the most common. All four carcinomas harbored A113_splice mutation and three of them had one or more coexisting mutations, typicallyRAS. All PTC carryingEIF1AXmutations were encapsulated follicular variants. In summary, this study shows thatEIF1AXmutations occur not only in thyroid carcinomas, but also in benign nodules. The most common mutation hotspot is the A113_splice, followed by a cluster of mutations in exon 2. When found in thyroid FNA samples,EIF1AXmutations confer ~20% risk of cancer; the risk is likely to be higher in nodules carrying a A113_splice mutation and whenEIF1AXcoexists withRASmutations.
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- 2016
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18. THADA fusion is a mechanism of IGF2BP3 activation and IGF1R signaling in thyroid cancer
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David J. Dabbs, Xiaosong Wang, Adrian V. Lee, Rohit Bhargava, Federica Panebianco, Robert L. Ferris, Sally E. Carty, Sanja Dacic, Shan Zhong, Abigail I. Wald, Marina N. Nikiforova, Rachel Diaz, Rajiv Dhir, Simion I. Chiosea, Sumita Trivedi, Yuri E. Nikiforov, Shih-Fan Kuan, Manoj Gandhi, Aatur D. Singhi, Lindsey M. Kelly, and Pengyuan Liu
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0301 basic medicine ,endocrine system ,Multidisciplinary ,Point mutation ,Cancer ,Biology ,Biological Sciences ,medicine.disease ,Bioinformatics ,Fusion protein ,Fusion gene ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Cancer cell ,medicine ,Cancer research ,Thyroid cancer ,PI3K/AKT/mTOR pathway ,Insulin-like growth factor 1 receptor - Abstract
Thyroid cancer development is driven by known point mutations or gene fusions found in ∼90% of cases, whereas driver mutations in the remaining tumors are unknown. The insulin-like growth factor 2 mRNA-binding protein 3 (IGF2BP3) plays an important role in cancer, yet the mechanisms of its activation in cancer cells remain poorly understood. Using whole-transcriptome and whole-genome analyses, we identified a recurrent fusion between the thyroid adenoma-associated (THADA) gene on chromosome 2 and the LOC389473 gene on chromosome 7 located 12 kb upstream of the IGF2BP3 gene. We show that THADA fusion to LOC389473 and other regions in the vicinity does not result in the formation of a chimeric protein but instead leads to strong overexpression of the full-length IGF2BP3 mRNA and protein, increased IGF2 translation and IGF1 receptor (IGF1R) signaling via PI3K and MAPK cascades, and promotion of cell proliferation, invasion, and transformation. THADA fusions and IGF2BP3 overexpression are found in ∼5% of thyroid cancers that lack any other driver mutations. We also find that strong IGF2BP3 overexpression via gene fusion, amplification, or other mechanisms occurs in 5 to 15% of several other cancer types. Finally, we provide in vitro and in vivo evidence that growth of IGF2BP3-driven cells and tumors may be blocked by IGF1R inhibition, raising the possibility that IGF2BP3 overexpression in cancer cells may predict an anti-IGF1R benefit.
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- 2017
19. Loss of c-KIT expression in thyroid cancer cells
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Antonio Giuseppe Naccarato, Ivo Marchetti, Paolo Aretini, Alessandro Apollo, Marco La Ferla, Sara Franceschi, Elena Tantillo, Chiara Maria Mazzanti, Francesca Lessi, Michele Menicagli, and Federica Panebianco
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Genetics and Molecular Biology (all) ,0301 basic medicine ,Thyroid Nuclear Factor 1 ,Cellular differentiation ,Papillary ,Gene Expression ,lcsh:Medicine ,Biochemistry ,Lung and Intrathoracic Tumors ,Malignant transformation ,Spectrum Analysis Techniques ,0302 clinical medicine ,Thymic Tumors ,Medicine and Health Sciences ,Endocrine Tumors ,lcsh:Science ,Thyroid cancer ,Thyroid ,Tumor ,Multidisciplinary ,Nuclear Proteins ,Cell Differentiation ,Flow Cytometry ,Proto-Oncogene Proteins c-kit ,medicine.anatomical_structure ,Oncology ,Thyroid Cancer, Papillary ,Spectrophotometry ,030220 oncology & carcinogenesis ,Cytophotometry ,Anatomy ,Research Article ,endocrine system ,Endocrine System ,Biology ,Transfection ,Carcinomas ,Cell Line ,Thyroid carcinoma ,PAX8 Transcription Factor ,03 medical and health sciences ,Extraction techniques ,Cell Line, Tumor ,Genetics ,medicine ,Humans ,Thyroid Neoplasms ,Molecular Biology Techniques ,Differentiated Tumors ,Molecular Biology ,Cell Proliferation ,Carcinoma ,Carcinoma, Papillary ,Transcription Factors ,Biochemistry, Genetics and Molecular Biology (all) ,Agricultural and Biological Sciences (all) ,lcsh:R ,Biology and Life Sciences ,Cancers and Neoplasms ,medicine.disease ,RNA extraction ,Research and analysis methods ,030104 developmental biology ,Tumor progression ,Cancer research ,lcsh:Q ,Thyroid Carcinomas ,PAX8 ,Developmental Biology - Abstract
Papillary thyroid carcinoma is the most frequent histologic type of thyroid tumor. Few studies investigated the role of c-KIT expression in thyroid tumors, suggesting a role for this receptor and its ligand in differentiation and growth control of thyroid epithelium and a receptor loss following malignant transformation. We investigated and correlated c-KIT expression levels and two known markers of thyrocytes differentiation, PAX8 and TTF-1, in malignant and benign cytological thyroid samples. Moreover, we performed functional studies on human papillary thyroid carcinoma cell line to associated c-KIT expression to thyrocytes differentiation and tumor proliferation. c-KIT and PAX8 expression resulted higher in benign samples compared to the malignant ones, and the expression levels of these two genes were significantly correlated to each other. We also observed that c-KIT overexpression led to an increase of PAX8 expression level together with a decrease of proliferation. Furthermore, c-KIT overexpressing cells showed a regression of typical morphological features of malignancy. Taken together these results suggest that c-KIT could be involved in the differentiation of thyroid cells and in tumor progression.
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- 2017
20. The combination of four molecular markers improves thyroid cancer cytologic diagnosis and patient management
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Generoso Bevilacqua, Federica Panebianco, Paolo Aretini, Sara Tomei, Francesca Lessi, Ivo Marchetti, Sara Franceschi, Chiara Maria Mazzanti, and Giancarlo Di Coscio
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Thyroid nodules ,Genetic Markers ,Male ,Proto-Oncogene Proteins B-raf ,Cancer Research ,Pathology ,medicine.medical_specialty ,RNA, Mitochondrial ,Biopsy, Fine-Needle ,Molecular marker ,Malignancy ,Sensitivity and Specificity ,Thyroid cancer ,Papillary thyroid cancer ,Biopsy ,Genetics ,medicine ,Biomarkers, Tumor ,Humans ,Thyroid Neoplasms ,Aged ,Principal Component Analysis ,medicine.diagnostic_test ,Receiver operating characteristic ,business.industry ,Gene Expression Profiling ,Computational model ,Thyroid ,Bayes Theorem ,Preoperative diagnosis ,Middle Aged ,medicine.disease ,Indeterminate lesions ,3. Good health ,Neoplasm Proteins ,MicroRNAs ,Proto-Oncogene Proteins c-kit ,medicine.anatomical_structure ,Oncology ,ROC Curve ,Mutation ,RNA ,Female ,business ,V600E ,Research Article - Abstract
Background Papillary thyroid cancer is the most common endocrine malignancy. The most sensitive and specific diagnostic tool for thyroid nodule diagnosis is fine-needle aspiration (FNA) biopsy with cytological evaluation. Nevertheless, FNA biopsy is not always decisive leading to “indeterminate” or “suspicious” diagnoses in 10 %–30 % of cases. BRAF V600E detection is currently used as molecular test to improve the diagnosis of thyroid nodules, yet it lacks sensitivity. The aim of the present study was to identify novel molecular markers/computational models to improve the discrimination between benign and malignant thyroid lesions. Methods We collected 118 pre-operative thyroid FNA samples. All 118 FNA samples were characterized for the presence of the BRAF V600E mutation (exon15) by pyrosequencing and further assessed for mRNA expression of four genes (KIT, TC1, miR-222, miR-146b) by quantitative polymerase chain reaction. Computational models (Bayesian Neural Network Classifier, discriminant analysis) were built, and their ability to discriminate benign and malignant tumors were tested. Receiver operating characteristic (ROC) analysis was performed and principal component analysis was used for visualization purposes. Results In total, 36/70 malignant samples carried the V600E mutation, while all 48 benign samples were wild type for BRAF exon15. The Bayesian neural network (BNN) and discriminant analysis, including the mRNA expression of the four genes (KIT, TC1, miR-222, miR-146b) showed a very strong predictive value (94.12 % and 92.16 %, respectively) in discriminating malignant from benign patients. The discriminant analysis showed a correct classification of 100 % of the samples in the malignant group, and 95 % by BNN. KIT and miR-146b showed the highest diagnostic accuracy of the ROC curve, with area under the curve values of 0.973 for KIT and 0.931 for miR-146b. Conclusions The four genes model proposed in this study proved to be highly discriminative of the malignant status compared with BRAF assessment alone. Its implementation in clinical practice can help in identifying malignant/benign nodules that would otherwise remain suspicious. Electronic supplementary material The online version of this article (doi:10.1186/s12885-015-1917-2) contains supplementary material, which is available to authorized users.
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- 2015
21. Loss of c-KIT in thyroid cancer cells: A functional study to investigate its role in tumor differentiation and progression
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Sara Franceschi, Francesca Lessi, Generoso Bevilacqua, C.M. Mazzanti, Michele Menicagli, M. La Ferla, Federica Panebianco, Elena Tantillo, Paolo Aretini, and Ivo Marchetti
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Oncology ,Cancer Research ,medicine.medical_specialty ,Tumor differentiation ,business.industry ,medicine.disease ,03 medical and health sciences ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Internal medicine ,medicine ,030212 general & internal medicine ,business ,Thyroid cancer - Published
- 2016
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22. Identification of the transforming STRN-ALK fusion as a potential therapeutic target in the aggressive forms of thyroid cancer
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Federica Panebianco, Daniel L. Altschuler, Sumita Trivedi, Yuri E. Nikiforov, Manoj Gandhi, Yan P. Yu, Viktoria N. Evdokimova, Sally E. Carty, Lindsey M. Kelly, Guillermo Barila, Marina N. Nikiforova, Jianhua Luo, Pengyuan Liu, Robert L. Ferris, Steven P. Hodak, and Sanja Dacic
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Pathology ,medicine.medical_specialty ,Pyridines ,Blotting, Western ,Molecular Sequence Data ,Nerve Tissue Proteins ,Biology ,Real-Time Polymerase Chain Reaction ,Fusion gene ,Crizotinib ,hemic and lymphatic diseases ,medicine ,Anaplastic lymphoma kinase ,Humans ,Anaplastic Lymphoma Kinase ,Thyroid Neoplasms ,Kinase activity ,Thyroid cancer ,In Situ Hybridization, Fluorescence ,Multidisciplinary ,Base Sequence ,Kinase ,Reverse Transcriptase Polymerase Chain Reaction ,Sequence Analysis, RNA ,Thyroid ,Cancer ,Membrane Proteins ,Receptor Protein-Tyrosine Kinases ,Biological Sciences ,medicine.disease ,Immunohistochemistry ,medicine.anatomical_structure ,HEK293 Cells ,Pyrimidines ,Cancer research ,Pyrazoles ,Calmodulin-Binding Proteins ,Gene Fusion ,Transcriptome ,medicine.drug - Abstract
Thyroid cancer is a common endocrine malignancy that encompasses well-differentiated as well as dedifferentiated cancer types. The latter tumors have high mortality and lack effective therapies. Using a paired-end RNA-sequencing approach, we report the discovery of rearrangements involving the anaplastic lymphoma kinase (ALK) gene in thyroid cancer. The most common of these involves a fusion between ALK and the striatin (STRN) gene, which is the result of a complex rearrangement involving the short arm of chromosome 2. STRN-ALK leads to constitutive activation of ALK kinase via dimerization mediated by the coiled-coil domain of STRN and to a kinase-dependent, thyroid-stimulating hormone–independent proliferation of thyroid cells. Moreover, expression of STRN-ALK transforms cells in vitro and induces tumor formation in nude mice. The kinase activity of STRN-ALK and the ALK-induced cell growth can be blocked by the ALK inhibitors crizotinib and TAE684. In addition to well-differentiated papillary cancer, STRN-ALK was found with a higher prevalence in poorly differentiated and anaplastic thyroid cancers, and it did not overlap with other known driver mutations in these tumors. Our data demonstrate that STRN-ALK fusion occurs in a subset of patients with highly aggressive types of thyroid cancer and provide initial evidence suggesting that it may represent a therapeutic target for these patients.
- Published
- 2014
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