611 results on '"Feasey, Nicholas"'
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2. Time to define One Health approaches to tackling antimicrobial resistance
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Musicha, Patrick, Morse, Tracy, Cocker, Derek, Mugisha, Lawrence, Jewell, Christopher P., and Feasey, Nicholas A.
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- 2024
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3. Research priorities to strengthen environmental cleaning in healthcare facilities: the CLEAN Group Consensus
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Gon, Giorgia, Dramowski, Angela, Hornsey, Emilio, Graham, Wendy, Fardousi, Nasser, Aiken, Alexander, Allegranzi, Benedetta, Anderson, Darcy, Bartram, James, Bhattacharya, Sanjay, Brogan, John, Caluwaerts, An, Padoveze, Maria Clara, Damani, Nizam, Dancer, Stephanie, Deeves, Miranda, Denny, Lindsay, Feasey, Nicholas, Hall, Lisa, Hopman, Joost, Chettry, Laxman Kharal, Kiernan, Martin, Kilpatrick, Claire, Mehtar, Shaheen, Moe, Christine, Nurse-Findlay, Stephen, Ogunsola, Folasade, Okwor, Tochi, Pascual, Bruno, Patrick, Molly, Pearse, Oliver, Peters, Alexandra, Pittet, Didier, Storr, Julie, Tomczyk, Sara, Weiser, Thomas G., and Yakubu, Habib
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- 2024
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4. The aetiology and antimicrobial resistance of bacterial maternal infections in Sub-Saharan Africa—a systematic review and meta-analysis
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Chapuma, Chikondi, Twabi, Hussein H., Monk, Edward J. M., Jafali, James, Weeks, Andrew, Beales, Emily, Kulapani, David, Selemani, Apatsa, Nliwasa, Marriott, Gadama, Luis, Nyirenda, Tony, Msefula, Chisomo, Dunlop, Catherine, Lissauer, Samantha, Feasey, Nicholas, Van der Veer, Charlotte, and Lissauer, David
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- 2024
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5. Longitudinal analysis within one hospital in sub-Saharan Africa over 20 years reveals repeated replacements of dominant clones of Klebsiella pneumoniae and stresses the importance to include temporal patterns for vaccine design considerations
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Heinz, Eva, Pearse, Oliver, Zuza, Allan, Bilima, Sithembile, Msefula, Chisomo, Musicha, Patrick, Siyabu, Patriciah, Tewesa, Edith, Graf, Fabrice E., Lester, Rebecca, Lissauer, Samantha, Cornick, Jennifer, Lewis, Joseph M., Kawaza, Kondwani, Thomson, Nicholas R., and Feasey, Nicholas A.
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- 2024
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6. Prevalence, risk factors, and antimicrobial resistance of endemic healthcare-associated infections in Africa: a systematic review and meta-analysis
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Bunduki, Gabriel Kambale, Masoamphambe, Effita, Fox, Tilly, Musaya, Janelisa, Musicha, Patrick, and Feasey, Nicholas
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- 2024
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7. Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes.
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Carey, Megan, Dyson, Zoe, Ingle, Danielle, Amir, Afreenish, Aworh, Mabel, Chattaway, Marie, Chew, Ka, Crump, John, Feasey, Nicholas, Howden, Benjamin, Keddy, Karen, Maes, Mailis, Parry, Christopher, Van Puyvelde, Sandra, Webb, Hattie, Afolayan, Ayorinde, Alexander, Anna, Anandan, Shalini, Andrews, Jason, Ashton, Philip, Basnyat, Buddha, Bavdekar, Ashish, Bogoch, Isaac, Clemens, John, da Silva, Kesia, De, Anuradha, de Ligt, Joep, Diaz Guevara, Paula, Dolecek, Christiane, Dutta, Shanta, Ehlers, Marthie, Francois Watkins, Louise, Garrett, Denise, Godbole, Gauri, Gordon, Melita, Greenhill, Andrew, Griffin, Chelsey, Gupta, Madhu, Hendriksen, Rene, Heyderman, Robert, Hooda, Yogesh, Hormazabal, Juan, Ikhimiukor, Odion, Iqbal, Junaid, Jacob, Jobin, Jenkins, Claire, Jinka, Dasaratha, John, Jacob, Kang, Gagandeep, Kanteh, Abdoulie, Kapil, Arti, Karkey, Abhilasha, Kariuki, Samuel, Kingsley, Robert, Koshy, Roshine, Lauer, A, Levine, Myron, Lingegowda, Ravikumar, Luby, Stephen, Mackenzie, Grant, Mashe, Tapfumanei, Msefula, Chisomo, Mutreja, Ankur, Nagaraj, Geetha, Nagaraj, Savitha, Nair, Satheesh, Naseri, Take, Nimarota-Brown, Susana, Njamkepo, Elisabeth, Okeke, Iruka, Perumal, Sulochana, Pollard, Andrew, Pragasam, Agila, Qadri, Firdausi, Qamar, Farah, Rahman, Sadia, Rambocus, Savitra, Rasko, David, Ray, Pallab, Robins-Browne, Roy, Rongsen-Chandola, Temsunaro, Rutanga, Jean, Saha, Samir, Saha, Senjuti, Saigal, Karnika, Sajib, Mohammad, Seidman, Jessica, Shakya, Jivan, Shamanna, Varun, Shastri, Jayanthi, Shrestha, Rajeev, Sia, Sonia, Sikorski, Michael, Singh, Ashita, Smith, Anthony, Tagg, Kaitlin, Tamrakar, Dipesh, Tanmoy, Arif, Thomas, Maria, and Thomas, Mathew
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S. enterica serovar typhi ,antimicrobial resistance ,epidemiology ,genomics ,global health ,infectious disease ,microbiology ,typhoid conjugate vaccine ,typhoid fever ,Humans ,Salmonella typhi ,Typhoid Fever ,Anti-Bacterial Agents ,Travel ,Drug Resistance ,Bacterial ,Ciprofloxacin - Abstract
BACKGROUND: The Global Typhoid Genomics Consortium was established to bring together the typhoid research community to aggregate and analyse Salmonella enterica serovar Typhi (Typhi) genomic data to inform public health action. This analysis, which marks 22 years since the publication of the first Typhi genome, represents the largest Typhi genome sequence collection to date (n=13,000). METHODS: This is a meta-analysis of global genotype and antimicrobial resistance (AMR) determinants extracted from previously sequenced genome data and analysed using consistent methods implemented in open analysis platforms GenoTyphi and Pathogenwatch. RESULTS: Compared with previous global snapshots, the data highlight that genotype 4.3.1 (H58) has not spread beyond Asia and Eastern/Southern Africa; in other regions, distinct genotypes dominate and have independently evolved AMR. Data gaps remain in many parts of the world, and we show the potential of travel-associated sequences to provide informal sentinel surveillance for such locations. The data indicate that ciprofloxacin non-susceptibility (>1 resistance determinant) is widespread across geographies and genotypes, with high-level ciprofloxacin resistance (≥3 determinants) reaching 20% prevalence in South Asia. Extensively drug-resistant (XDR) typhoid has become dominant in Pakistan (70% in 2020) but has not yet become established elsewhere. Ceftriaxone resistance has emerged in eight non-XDR genotypes, including a ciprofloxacin-resistant lineage (4.3.1.2.1) in India. Azithromycin resistance mutations were detected at low prevalence in South Asia, including in two common ciprofloxacin-resistant genotypes. CONCLUSIONS: The consortiums aim is to encourage continued data sharing and collaboration to monitor the emergence and global spread of AMR Typhi, and to inform decision-making around the introduction of typhoid conjugate vaccines (TCVs) and other prevention and control strategies. FUNDING: No specific funding was awarded for this meta-analysis. Coordinators were supported by fellowships from the European Union (ZAD received funding from the European Unions Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 845681), the Wellcome Trust (SB, Wellcome Trust Senior Fellowship), and the National Health and Medical Research Council (DJI is supported by an NHMRC Investigator Grant [GNT1195210]).
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- 2023
8. An assessment of infection prevention and control implementation in Malawian hospitals using the WHO Infection Prevention and Control Assessment Framework (IPCAF) tool
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Ng'ambi, Dorica, O'Byrne, Thomasena, Jingini, Emmie, Chadwala, Hope, Musopole, Owen, Kamchedzera, Wala, Tancred, Tara, and Feasey, Nicholas
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- 2024
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9. Predicting mortality in febrile adults: comparative performance of the MEWS, qSOFA, and UVA scores using prospectively collected data among patients in four health-care sites in sub-Saharan Africa and South-Eastern Asia
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Ajanovic, Sara, Amos, Benjamin, Ashley, Elizabeth A., Baerenbold, Oliver, Baghoumina, Stéphanie, Balanza, Núria, Bandason, Tsitsi, Bassat, Quique, Bhattacharyya, Tapan, Blacksell, Stuart D., Boca, Zumilda, Bottomley, Christian, Bradley, John, Bramugy, Justina M., Chandler, Clare IR., Chansamouth, Vilada, Chimenya, Mabvuto, Chipanga, Joseph, Cossa, Anelsio, Crump, John A., Dauya, Ethel, Davis, Catherine, de Lamballerie, Xavier, Dixon, Justin, Douangphachanh, Somyoth, Dubot-Pérès, Audrey, Durkin, Michelle M., Feasey, Nicholas A., Ferrand, Rashida A., Fink, Colin, Fitchett, Elizabeth JA., Gerada, Alessandro, Graves, Stephen R., Green, Edward, Handley, Becca L., Hopkins, Heidi, Hutchison, Coll D., Jaksuwan, Risara, Jervis, Jessica, Jones, Jayne, Kain, Kevin C., Keddie, Suzanne H., Khounpaseuth, Khamxeng, Kranzer, Katharina, Kunlaya, Khamfong, Lal, Pankaj, Lal, Sham, Lalloo, David G., Luangraj, Manophab, Lubell, Yoel, Mabey, David CW., MacPherson, Eleanor, Makoga, Forget, Manichan, Sengchanh, Marlais, Tegwen, Maurer, Florian, Mayxay, Mayfong, Miles, Michael, Mogeni, Polycarp, Mucasse, Campos, Newton, Paul N., Nguyen, Chelsea, Olaru, Ioana D., Phimolsarnnousith, Vilayouth, Picardeau, Mathieu, Roberts, Chrissy H., Sengduangphachanh, Amphone, Sengsavang, Siho, Sibanda, Molly, Singha, Somvai, Stenos, John, Tanganuchitcharnchai, Ampai, Tanvir, Hira, Ussher, James E., Valente, Marta, Voice, Marie A., Vongsouvath, Manivanh, Wamaka, Msopole, Wheat, L Joseph, Yeung, Shunmay, Green, Edward W., Roberts, Chrissy h., Mabey, David C.W., and Moore, Christopher C.
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- 2024
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10. WHO global research priorities for antimicrobial resistance in human health
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Aanensen, David, Alanio, Alexandre, Alastruey-Izquierdo, Ana, Alemayehu, Tinsae, Al-Hasan, Majdi, Allegaert, Karel, Al-Maani, Amal Saif, Al-Salman, Jameela, Alshukairi, Abeer Nizar, Amir, Afreenish, Applegate, Tanya, Araj, George F, Villalobos, Marlen Arce, Årdal, Christine, Ashiru-Oredope, Diane, Ashley, Elizabeth A, Babin, François-Xavier, Bachmann, Laura H, Bachmann, Till, Baker, Kate Susan, Balasegaram, Manica, Bamford, Colleen, Baquero, Fernando, Barcelona, Laura Isabel, Bassat, Quique, Bassetti, Matteo, Basu, Sulagna, Beardsley, Justin, Vásquez, Grey Benoit, Berkley, James A, Bhatnagar, Anuj K, Bielicki, Julia, Bines, Julie, Bongomin, Felix, Bonomo, Robert A, Bradley, John S, Bradshaw, Catriona, Brett, Ana, Brink, Adrian, Brown, Colin, Brown, Jeremy, Buising, Kirsty, Carson, Carolee, Carvalho, Anna Cristina, Castagnola, Elio, Cavaleri, Marco, Cecchini, Michele, Chabala, Chishala, Chaisson, Richard E, Chakrabarti, Arunaloke, Chandler, Clare, Chandy, Sujith John, Charani, Esmita, Chen, Lisa, Chiara, Francesca, Chowdhary, Anuradha, Chua, Arlene, Chuki, Pem, Chun, Doo Ryeon, Churchyard, Gavin, Cirillo, Daniela, Clack, Lauren, Coffin, Susan E, Cohn, Jennifer, Cole, Michelle, Conly, John, Cooper, Ben, Corso, Alejandra, Cosgrove, Sara E, Cox, Helen, Daley, Charles L, Darboe, Saffiatou, Darton, Tom, Davies, Gerry, de Egea, Viviana, Dedeić-Ljubović, Amela, Deeves, Miranda, Denkinger, Claudia, Dillon, Jo-Anne R, Dramowski, Angela, Eley, Brian, Roberta Esposito, Susanna Maria, Essack, Sabiha Y, Farida, Helmia, Farooqi, Joveria, Feasey, Nicholas, Ferreyra, Cecilia, Fifer, Helen, Finlayson, Heather, Frick, Mike, Gales, Ana Cristina, Galli, Luisa, Gandra, Sumanth, Gerber, Jeffrey S, Giske, Christian, Gordon, Bruce, Govender, Nelesh, Guessennd, Nathalie, Guindo, Ibrehima, Gurbanova, Elmira, Gwee, Amanda, Hagen, Ferry, Harbarth, Stephan, Haze, John, Heim, Jutta, Hendriksen, Rene, Heyderman, Robert Simon, Holt, Kathryn Elizabeth, Hönigl, Martin, Hook, Edward W, Hope, William, Hopkins, Heidi, Hughes, Gwenda, Ismail, Ghada, Issack, Mohammad Iqbal, Jacobs, Jan, Jasovský, Dušan, Jehan, Fyeza, Pearson, Antonieta Jimenez, Jones, Makoto, Joshi, Mohan P, Kapil, Arti, Kariuki, Samuel, Karkey, Abhilasha, Kearns, Gregory L, Keddy, Karen Helena, Khanna, Nina, Kitamura, Akiko, Kolho, Kaija-Leena, Kontoyiannis, Dimitrios P, Kotwani, Anita, Kozlov, Roman S, Kranzer, Katharina, Kularatne, Ranmini, Lahra, Monica M, Langford, Bradley J, Laniado-Laborin, Rafael, Larsson, Joakim, Lass-Flörl, Cornelia, Le Doare, Kirsty, Lee, Hyukmin, Lessa, Fernanda, Levin, Anna S, Limmathurotsakul, Direk, Lincopan, Nilton, Lo Vecchio, Andrea, Lodha, Rakesh, Loeb, Mark, Longtin, Yves, Lye, David Chien, Mahmud, Asif Mujtaba, Manaia, Célia, Manderson, Lenore, Mareković, Ivana, Marimuthu, Kalisvar, Martin, Irene, Mashe, Tapfumanei, Mei, Zeng, Meis, Jacques F, Lyra Tavares De Melo, Flávio Augusto, Mendelson, Marc, Miranda, Angelica Espinosa, Moore, David, Morel, Chantal, Moremi, Nyambura, Moro, Maria Luisa, Moussy, Francis, Mshana, Stephen, Mueller, Arno, Ndow, Francis J, Nicol, Mark, Nunn, Andrew, Obaro, Stephen, Obiero, Christina W, Okeke, Iruka N, Okomo, Uduak, Okwor, Tochi J, Oladele, Rita, Omulo, Sylvia, Ondoa, Pascale, Ortellado de Canese, Juana Medarda, Ostrosky-Zeichner, Luis, Padoveze, Maria Clara, Pai, Madhukar, Park, Benjamin, Parkhill, Julian, Parry, Christopher M, Peeling, Rosanna, Sobreira Vieira Peixe, Luísa Maria, Perovic, Olga, Pettigrew, Melinda M, Principi, Nicola, Pulcini, Céline, Puspandari, Nelly, Rawson, Timothy, Reddy, Denasha Lavanya, Reddy, Kessendri, Redner, Paulo, Rodríguez Tudela, Juan Luis, Rodríguez-Baño, Jesús, Van Katwyk, Susan Rogers, Roilides, Emmanuel, Rollier, Christine, Rollock, Leslie, Ronat, Jean-Baptiste, Ruppe, Etienne, Sadarangani, Manish, Salisbury, David, Salou, Mounerou, Samison, Luc Hervé, Sanguinetti, Maurizio, Sartelli, Massimo, Schellack, Natalie, Schouten, Jeroen, Schwaber, Mitchell J, Seni, Jeremiah, Senok, Abiola, Shafer, William M, Shakoor, Sadia, Sheppard, Donald, Shin, Jong-Hee, Sia, Sonia, Sievert, Dawn, Singh, Ishwar, Singla, Rupak, Skov, Robert Leo, Soge, Olusegun O, Sprute, Rosanne, Srinivasan, Arjun, Srinivasan, Subasree, Sundsfjord, Arnfinn, Tacconelli, Evelina, Tahseen, Sabira, Tangcharoensathien, Viroj, Tängdén, Thomas, Thursky, Karin, Thwaites, Guy, Tigulini de Souza Peral, Renata, Tong, Deborah, Tootla, Hafsah Deepa, Tsioutis, Constantinos, Turner, Katy M, Turner, Paul, Omar, Shaheed Vally, van de Sande, Wendy WJ, van den Hof, Susan, van Doorn, Rogier, Veeraraghavan, Balaji, Verweij, Paul, Wahyuningsih, Retno, Wang, Hui, Warris, Adilia, Weinstock, Hillard, Wesangula, Evelyn, Whiley, David, White, Peter J, Williams, Phoebe, Xiao, Yonghong, Moscoso, Martin Yagui, Yang, Hsu Li, Yoshida, Sachiyo, Yu, Yunsong, Żabicka, Dorota, Zignol, Matteo, Rudan, Igor, Bertagnolio, Silvia, Dobreva, Zlatina, Centner, Chad M, Olaru, Ioana Diana, Donà, Daniele, Burzo, Stefano, Huttner, Benedikt D, Chaillon, Antoine, Gebreselassie, Nebiat, Wi, Teodora, Hasso-Agopsowicz, Mateusz, Allegranzi, Benedetta, Sati, Hatim, Ivanovska, Verica, Kothari, Kavita U, Balkhy, Hanan H, Cassini, Alessandro, Hamers, Raph L, and Weezenbeek, Kitty Van
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- 2024
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11. Key environmental exposure pathways to antimicrobial resistant bacteria in southern Malawi: A SaniPath approach
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Mwapasa, Taonga, Chidziwisano, Kondwani, Mphasa, Madalitso, Cocker, Derek, Rimella, Lorenzo, Amos, Stevie, Feasey, Nicholas, and Morse, Tracy
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- 2024
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12. Global burden of bacterial antimicrobial resistance 1990–2021: a systematic analysis with forecasts to 2050
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Naghavi, Mohsen, Vollset, Stein Emil, Ikuta, Kevin S, Swetschinski, Lucien R, Gray, Authia P, Wool, Eve E, Robles Aguilar, Gisela, Mestrovic, Tomislav, Smith, Georgia, Han, Chieh, Hsu, Rebecca L, Chalek, Julian, Araki, Daniel T, Chung, Erin, Raggi, Catalina, Gershberg Hayoon, Anna, Davis Weaver, Nicole, Lindstedt, Paulina A, Smith, Amanda E, Altay, Umut, Bhattacharjee, Natalia V, Giannakis, Konstantinos, Fell, Frederick, McManigal, Barney, Ekapirat, Nattwut, Mendes, Jessica Andretta, Runghien, Tilleye, Srimokla, Oraya, Abdelkader, Atef, Abd-Elsalam, Sherief, Aboagye, Richard Gyan, Abolhassani, Hassan, Abualruz, Hasan, Abubakar, Usman, Abukhadijah, Hana J, Aburuz, Salahdein, Abu-Zaid, Ahmed, Achalapong, Sureerak, Addo, Isaac Yeboah, Adekanmbi, Victor, Adeyeoluwa, Temitayo Esther, Adnani, Qorinah Estiningtyas Sakilah, Adzigbli, Leticia Akua, Afzal, Muhammad Sohail, Afzal, Saira, Agodi, Antonella, Ahlstrom, Austin J, Ahmad, Aqeel, Ahmad, Sajjad, Ahmad, Tauseef, Ahmadi, Ali, Ahmed, Ayman, Ahmed, Haroon, Ahmed, Ibrar, Ahmed, Mohammed, Ahmed, Saeed, Ahmed, Syed Anees, Akkaif, Mohammed Ahmed, Al Awaidy, Salah, Al Thaher, Yazan, Alalalmeh, Samer O, AlBataineh, Mohammad T, Aldhaleei, Wafa A, Al-Gheethi, Adel Ali Saeed, Alhaji, Nma Bida, Ali, Abid, Ali, Liaqat, Ali, Syed Shujait, Ali, Waad, Allel, Kasim, Al-Marwani, Sabah, Alrawashdeh, Ahmad, Altaf, Awais, Al-Tammemi, Alaa B., Al-Tawfiq, Jaffar A, Alzoubi, Karem H, Al-Zyoud, Walid Adnan, Amos, Ben, Amuasi, John H, Ancuceanu, Robert, Andrews, Jason R, Anil, Abhishek, Anuoluwa, Iyadunni Adesola, Anvari, Saeid, Anyasodor, Anayochukwu Edward, Apostol, Geminn Louis Carace, Arabloo, Jalal, Arafat, Mosab, Aravkin, Aleksandr Y, Areda, Demelash, Aremu, Abdulfatai, Artamonov, Anton A, Ashley, Elizabeth A, Asika, Marvellous O, Athari, Seyyed Shamsadin, Atout, Maha Moh'd Wahbi, Awoke, Tewachew, Azadnajafabad, Sina, Azam, James Mba, Aziz, Shahkaar, Azzam, Ahmed Y., Babaei, Mahsa, Babin, Francois-Xavier, Badar, Muhammad, Baig, Atif Amin, Bajcetic, Milica, Baker, Stephen, Bardhan, Mainak, Barqawi, Hiba Jawdat, Basharat, Zarrin, Basiru, Afisu, Bastard, Mathieu, Basu, Saurav, Bayleyegn, Nebiyou Simegnew, Belete, Melaku Ashagrie, Bello, Olorunjuwon Omolaja, Beloukas, Apostolos, Berkley, James A, Bhagavathula, Akshaya Srikanth, Bhaskar, Sonu, Bhuyan, Soumitra S, Bielicki, Julia A, Briko, Nikolay Ivanovich, Brown, Colin Stewart, Browne, Annie J, Buonsenso, Danilo, Bustanji, Yasser, Carvalheiro, Cristina G, Castañeda-Orjuela, Carlos A, Cenderadewi, Muthia, Chadwick, Joshua, Chakraborty, Sandip, Chandika, Rama Mohan, Chandy, Sara, Chansamouth, Vilada, Chattu, Vijay Kumar, Chaudhary, Anis Ahmad, Ching, Patrick R, Chopra, Hitesh, Chowdhury, Fazle Rabbi, Chu, Dinh-Toi, Chutiyami, Muhammad, Cruz-Martins, Natalia, da Silva, Alanna Gomes, Dadras, Omid, Dai, Xiaochen, Darcho, Samuel D, Das, Saswati, De la Hoz, Fernando Pio, Dekker, Denise Myriam, Dhama, Kuldeep, Diaz, Daniel, Dickson, Benjamin Felix Rothschild, Djorie, Serge Ghislain, Dodangeh, Milad, Dohare, Sushil, Dokova, Klara Georgieva, Doshi, Ojas Prakashbhai, Dowou, Robert Kokou, Dsouza, Haneil Larson, Dunachie, Susanna J, Dziedzic, Arkadiusz Marian, Eckmanns, Tim, Ed-Dra, Abdelaziz, Eftekharimehrabad, Aziz, Ekundayo, Temitope Cyrus, El Sayed, Iman, Elhadi, Muhammed, El-Huneidi, Waseem, Elias, Christelle, Ellis, Sally J, Elsheikh, Randa, Elsohaby, Ibrahim, Eltaha, Chadi, Eshrati, Babak, Eslami, Majid, Eyre, David William, Fadaka, Adewale Oluwaseun, Fagbamigbe, Adeniyi Francis, Fahim, Ayesha, Fakhri-Demeshghieh, Aliasghar, Fasina, Folorunso Oludayo, Fasina, Modupe Margaret, Fatehizadeh, Ali, Feasey, Nicholas A, Feizkhah, Alireza, Fekadu, Ginenus, Fischer, Florian, Fitriana, Ida, Forrest, Karen M, Fortuna Rodrigues, Celia, Fuller, John E, Gadanya, Muktar A, Gajdács, Márió, Gandhi, Aravind P, Garcia-Gallo, Esteban E, Garrett, Denise O, Gautam, Rupesh K, Gebregergis, Miglas Welay, Gebrehiwot, Mesfin, Gebremeskel, Teferi Gebru, Geffers, Christine, Georgalis, Leonidas, Ghazy, Ramy Mohamed, Golechha, Mahaveer, Golinelli, Davide, Gordon, Melita, Gulati, Snigdha, Gupta, Rajat Das, Gupta, Sapna, Gupta, Vijai Kumar, Habteyohannes, Awoke Derbie, Haller, Sebastian, Harapan, Harapan, Harrison, Michelle L, Hasaballah, Ahmed I, Hasan, Ikramul, Hasan, Rumina Syeda, Hasani, Hamidreza, Haselbeck, Andrea Haekyung, Hasnain, Md Saquib, Hassan, Ikrama Ibrahim, Hassan, Shoaib, Hassan Zadeh Tabatabaei, Mahgol Sadat, Hayat, Khezar, He, Jiawei, Hegazi, Omar E, Heidari, Mohammad, Hezam, Kamal, Holla, Ramesh, Holm, Marianne, Hopkins, Heidi, Hossain, Md Mahbub, Hosseinzadeh, Mehdi, Hostiuc, Sorin, Hussein, Nawfal R, Huy, Le Duc, Ibáñez-Prada, Elsa D, Ikiroma, Adalia, Ilic, Irena M, Islam, Sheikh Mohammed Shariful, Ismail, Faisal, Ismail, Nahlah Elkudssiah, Iwu, Chidozie Declan, Iwu-Jaja, Chinwe Juliana, Jafarzadeh, Abdollah, Jaiteh, Fatoumatta, Jalilzadeh Yengejeh, Reza, Jamora, Roland Dominic G, Javidnia, Javad, Jawaid, Talha, Jenney, Adam W J, Jeon, Hyon Jin, Jokar, Mohammad, Jomehzadeh, Nabi, Joo, Tamas, Joseph, Nitin, Kamal, Zul, Kanmodi, Kehinde Kazeem, Kantar, Rami S, Kapisi, James Apollo, Karaye, Ibraheem M, Khader, Yousef Saleh, Khajuria, Himanshu, Khalid, Nauman, Khamesipour, Faham, Khan, Ajmal, Khan, Mohammad Jobair, Khan, Muhammad Tariq, Khanal, Vishnu, Khidri, Feriha Fatima, Khubchandani, Jagdish, Khusuwan, Suwimon, Kim, Min Seo, Kisa, Adnan, Korshunov, Vladimir Andreevich, Krapp, Fiorella, Krumkamp, Ralf, Kuddus, Mohammed, Kulimbet, Mukhtar, Kumar, Dewesh, Kumaran, Emmanuelle A P, Kuttikkattu, Ambily, Kyu, Hmwe Hmwe, Landires, Iván, Lawal, Basira Kankia, Le, Thao Thi Thu, Lederer, Ingeborg Maria, Lee, Munjae, Lee, Seung Won, Lepape, Alain, Lerango, Temesgen Leka, Ligade, Virendra S, Lim, Cherry, Lim, Stephen S, Limenh, Liknaw Workie, Liu, Chaojie, Liu, Xiaofeng, Liu, Xuefeng, Loftus, Michael J, M Amin, Hawraz Ibrahim, Maass, Kelsey Lynn, Maharaj, Sandeep B, Mahmoud, Mansour Adam, Maikanti-Charalampous, Panagiota, Makram, Omar M, Malhotra, Kashish, Malik, Ahmad Azam, Mandilara, Georgia D, Marks, Florian, Martinez-Guerra, Bernardo Alfonso, Martorell, Miquel, Masoumi-Asl, Hossein, Mathioudakis, Alexander G, May, Juergen, McHugh, Theresa A, Meiring, James, Meles, Hadush Negash, Melese, Addisu, Melese, Endalkachew Belayneh, Minervini, Giuseppe, Mohamed, Nouh Saad, Mohammed, Shafiu, Mohan, Syam, Mokdad, Ali H, Monasta, Lorenzo, Moodi Ghalibaf, AmirAli, Moore, Catrin E, Moradi, Yousef, Mossialos, Elias, Mougin, Vincent, Mukoro, George Duke, Mulita, Francesk, Muller-Pebody, Berit, Murillo-Zamora, Efren, Musa, Sani, Musicha, Patrick, Musila, Lillian A, Muthupandian, Saravanan, Nagarajan, Ahamarshan Jayaraman, Naghavi, Pirouz, Nainu, Firzan, Nair, Tapas Sadasivan, Najmuldeen, Hastyar Hama Rashid, Natto, Zuhair S, Nauman, Javaid, Nayak, Biswa Prakash, Nchanji, G Takop, Ndishimye, Pacifique, Negoi, Ionut, Negoi, Ruxandra Irina, Nejadghaderi, Seyed Aria, Nguyen, QuynhAnh P, Noman, Efaq Ali, Nwakanma, Davis C, O'Brien, Seamus, Ochoa, Theresa J, Odetokun, Ismail A, Ogundijo, Oluwaseun Adeolu, Ojo-Akosile, Tolulope R, Okeke, Sylvester Reuben, Okonji, Osaretin Christabel, Olagunju, Andrew T, Olivas-Martinez, Antonio, Olorukooba, Abdulhakeem Abayomi, Olwoch, Peter, Onyedibe, Kenneth Ikenna, Ortiz-Brizuela, Edgar, Osuolale, Olayinka, Ounchanum, Pradthana, Oyeyemi, Oyetunde T, P A, Mahesh Padukudru, Paredes, Jose L, Parikh, Romil R, Patel, Jay, Patil, Shankargouda, Pawar, Shrikant, Peleg, Anton Y, Peprah, Prince, Perdigão, João, Perrone, Carlo, Petcu, Ionela-Roxana, Phommasone, Koukeo, Piracha, Zahra Zahid, Poddighe, Dimitri, Pollard, Andrew J, Poluru, Ramesh, Ponce-De-Leon, Alfredo, Puvvula, Jagadeesh, Qamar, Farah Naz, Qasim, Nameer Hashim, Rafai, Clotaire Donatien, Raghav, Pankaja, Rahbarnia, Leila, Rahim, Fakher, Rahimi-Movaghar, Vafa, Rahman, Mosiur, Rahman, Muhammad Aziz, Ramadan, Hazem, Ramasamy, Shakthi Kumaran, Ramesh, Pushkal Sinduvadi, Ramteke, Pramod W, Rana, Rishabh Kumar, Rani, Usha, Rashidi, Mohammad-Mahdi, Rathish, Devarajan, Rattanavong, Sayaphet, Rawaf, Salman, Redwan, Elrashdy Moustafa Mohamed, Reyes, Luis Felipe, Roberts, Tamalee, Robotham, Julie V, Rosenthal, Victor Daniel, Ross, Allen Guy, Roy, Nitai, Rudd, Kristina E, Sabet, Cameron John, Saddik, Basema Ahmad, Saeb, Mohammad Reza, Saeed, Umar, Saeedi Moghaddam, Sahar, Saengchan, Weeravoot, Safaei, Mohsen, Saghazadeh, Amene, Saheb Sharif-Askari, Narjes, Sahebkar, Amirhossein, Sahoo, Soumya Swaroop, Sahu, Maitreyi, Saki, Morteza, Salam, Nasir, Saleem, Zikria, Saleh, Mohamed A, Samodra, Yoseph Leonardo, Samy, Abdallah M, Saravanan, Aswini, Satpathy, Maheswar, Schumacher, Austin E, Sedighi, Mansour, Seekaew, Samroeng, Shafie, Mahan, Shah, Pritik A, Shahid, Samiah, Shahwan, Moyad Jamal, Shakoor, Sadia, Shalev, Noga, Shamim, Muhammad Aaqib, Shamshirgaran, Mohammad Ali, Shamsi, Anas, Sharifan, Amin, Shastry, Rajesh P, Shetty, Mahabalesh, Shittu, Aminu, Shrestha, Sunil, Siddig, Emmanuel Edwar, Sideroglou, Theologia, Sifuentes-Osornio, Jose, Silva, Luís Manuel Lopes Rodrigues, Simões, Eric A F, Simpson, Andrew J H, Singh, Amit, Singh, Surjit, Sinto, Robert, Soliman, Sameh S M, Soraneh, Soroush, Stoesser, Nicole, Stoeva, Temenuga Zhekova, Swain, Chandan Kumar, Szarpak, Lukasz, T Y, Sree Sudha, Tabatabai, Shima, Tabche, Celine, Taha, Zanan Mohammed-Ameen, Tan, Ker-Kan, Tasak, Nidanuch, Tat, Nathan Y, Thaiprakong, Areerat, Thangaraju, Pugazhenthan, Tigoi, Caroline Chepngeno, Tiwari, Krishna, Tovani-Palone, Marcos Roberto, Tran, Thang Huu, Tumurkhuu, Munkhtuya, Turner, Paul, Udoakang, Aniefiok John, Udoh, Arit, Ullah, Noor, Ullah, Saeed, Vaithinathan, Asokan Govindaraj, Valenti, Mario, Vos, Theo, Vu, Huong T L, Waheed, Yasir, Walker, Ann Sarah, Walson, Judd L, Wangrangsimakul, Tri, Weerakoon, Kosala Gayan, Wertheim, Heiman F L, Williams, Phoebe C M, Wolde, Asrat Arja, Wozniak, Teresa M, Wu, Felicia, Wu, Zenghong, Yadav, Mukesh Kumar Kumar, Yaghoubi, Sajad, Yahaya, Zwanden Sule, Yarahmadi, Amir, Yezli, Saber, Yismaw, Yazachew Engida, Yon, Dong Keon, Yuan, Chun-Wei, Yusuf, Hadiza, Zakham, Fathiah, Zamagni, Giulia, Zhang, Haijun, Zhang, Zhi-Jiang, Zielińska, Magdalena, Zumla, Alimuddin, Zyoud, Sa'ed H. H, Zyoud, Samer H, Hay, Simon I, Stergachis, Andy, Sartorius, Benn, Cooper, Ben S, Dolecek, Christiane, and Murray, Christopher J L
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- 2024
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13. Utility, feasibility, and socio-demographic considerations in the diagnosis of bacterial RTI's by GC-IMS breath analysis
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Stewart, Trenton K., Brodrick, Emma, Reed, Matthew J., Collins, Andrea M., Daulton, Emma, Adams, Emily, Feasey, Nicholas, Ratcliffe, Libbe, Exley, Diane, Todd, Stacy, van Ginneken, Nadja, Sahota, Amandip, Devereux, Graham, Williams, E.M., and Covington, James A.
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- 2024
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14. The burden of bacterial antimicrobial resistance in the WHO African region in 2019: a cross-country systematic analysis
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Sartorius, Benn, Gray, Authia P, Davis Weaver, Nicole, Robles Aguilar, Gisela, Swetschinski, Lucien R, Ikuta, Kevin S, Mestrovic, Tomislav, Chung, Erin, Wool, Eve E, Han, Chieh, Gershberg Hayoon, Anna, Araki, Daniel T, Abd-Elsalam, Sherief, Aboagye, Richard Gyan, Adamu, Lawan Hassan, Adepoju, Abiola Victor, Ahmed, Ayman, Akalu, Gizachew Taddesse, Akande-Sholabi, Wuraola, Amuasi, John H, Amusa, Ganiyu Adeniyi, Argaw, Ayele Mamo, Aruleba, Raphael Taiwo, Awoke, Tewachew, Ayalew, Melese Kitu, Azzam, Ahmed Y, Babin, Francois-Xavier, Banerjee, Indrajit, Basiru, Afisu, Bayileyegn, Nebiyou Simegnew, Belete, Melaku Ashagrie, Berkley, James A, Bielicki, Julia A, Dekker, Denise, Demeke, Dessalegn, Demsie, Desalegn Getnet, Dessie, Anteneh Mengist, Dunachie, Susanna J, Ed-Dra, Abdelaziz, Ekholuenetale, Michael, Ekundayo, Temitope Cyrus, El Sayed, Iman, Elhadi, Muhammed, Elsohaby, Ibrahim, Eyre, David, Fagbamigbe, Adeniyi Francis, Feasey, Nicholas A, Fekadu, Ginenus, Fell, Frederick, Forrest, Karen M, Gebrehiwot, Mesfin, Gezae, Kebede Embaye, Ghazy, Ramy Mohamed, Hailegiyorgis, Tewodros Tesfa, Haines-Woodhouse, Georgina, Hasaballah, Ahmed I, Haselbeck, Andrea Haekyung, Hsia, Yingfen, Iradukunda, Arnaud, Iregbu, Kenneth Chukwuemeka, Iwu, Chidozie C D, Iwu-Jaja, Chinwe Juliana, Iyasu, Assefa N, Jaiteh, Fatoumatta, Jeon, Hyonjin, Joshua, Charity Ehimwenma, Kassa, Gebrehiwot G, Katoto, Patrick DMC, Krumkamp, Ralf, Kumaran, Emmanuelle A P, Kyu, Hmwe Hmwe, Manilal, Aseer, Marks, Florian, May, Jürgen, McLaughlin, Susan A, McManigal, Barney, Melese, Addisu, Misgina, Kebede Haile, Mohamed, Nouh Saad, Mohammed, Mustapha, Mohammed, Shafiu, Mohammed, Shikur, Mokdad, Ali H, Moore, Catrin E, Mougin, Vincent, Mturi, Neema, Mulugeta, Temesgen, Musaigwa, Fungai, Musicha, Patrick, Musila, Lillian A, Muthupandian, Saravanan, Naghavi, Pirouz, Negash, Hadush, Nuckchady, Dooshanveer C, Obiero, Christina W, Odetokun, Ismail A, Ogundijo, Oluwaseun Adeolu, Okidi, Lawrence, Okonji, Osaretin Christabel, Olagunju, Andrew T, Olufadewa, Isaac Iyinoluwa, Pak, Gi Deok, Perovic, Olga, Pollard, Andrew, Raad, Mathieu, Rafaï, Clotaire, Ramadan, Hazem, Redwan, Elrashdy Moustafa Mohamed, Roca, Anna, Rosenthal, Victor Daniel, Saleh, Mohamed A, Samy, Abdallah M, Sharland, M, Shittu, Aminu, Siddig, Emmanuel Edwar, Sisay, Eskinder Ayalew, Stergachis, Andy, Tesfamariam, Wegen Beyene, Tigoi, Caroline, Tincho, Marius Belmondo, Tiruye, Tenaw Yimer, Umeokonkwo, Chukwuma David, Walsh, Timothy, Walson, Judd L, Yusuf, Hadiza, Zeru, Naod Gebrekrstos, Hay, Simon I, Dolecek, Christiane, Murray, Christopher J L, and Naghavi, Mohsen
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- 2024
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15. Enduring pathogenicity of African strains of Salmonella on plastics and glass in simulated peri-urban environmental waste piles
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Ormsby, Michael J., White, Hannah L., Metcalf, Rebecca, Oliver, David M., Feasey, Nicholas A., and Quilliam, Richard S.
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- 2024
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16. Unfolding selection to infer individual risk heterogeneity for optimising disease forecasts and policy development
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Gomes, M. Gabriela M., Feasey, Nicholas A., Ferreira, Marcelo U., LaCourse, E. James, Langwig, Kate E., Reimer, Lisa, Ringwald, Beate, Rylance, Jamie, Stothard, J. Russell, Taegtmeyer, Miriam, Terlouw, Dianne J., Tolhurst, Rachel, Wingfield, Tom, and Gordon, Stephen B.
- Subjects
Quantitative Biology - Populations and Evolution ,92 - Abstract
Mathematical models are increasing adopted for setting targets for disease prevention and control. As model-informed policies are implemented, however, the inaccuracies of some forecasts become apparent, for example overprediction of infection burdens and overestimation of intervention impacts. Here, we attribute these discrepancies to methodological limitations in capturing the heterogeneities of real-world systems. The mechanisms underpinning single factors for infection and their interactions determine individual propensities to acquire disease. These are potentially so numerous that to attain a full mechanistic description may be unfeasible. To contribute constructively to the development of health policies, model developers either leave factors out (reductionism) or adopt a broader but coarse description (holism). In our view, predictive capacity requires holistic descriptions of heterogeneity which are currently underutilised in infectious disease epidemiology but common in other disciplines., Comment: 10 pages, 3 figures
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- 2020
17. Utilizing river and wastewater as a SARS-CoV-2 surveillance tool in settings with limited formal sewage systems
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Barnes, Kayla G., Levy, Joshua I., Gauld, Jillian, Rigby, Jonathan, Kanjerwa, Oscar, Uzzell, Christopher B., Chilupsya, Chisomo, Anscombe, Catherine, Tomkins-Tinch, Christopher, Mbeti, Omar, Cairns, Edward, Thole, Herbert, McSweeney, Shannon, Chibwana, Marah G., Ashton, Philip M., Jere, Khuzwayo C., Meschke, John Scott, Diggle, Peter, Cornick, Jennifer, Chilima, Benjamin, Jambo, Kondwani, Andersen, Kristian G., Kawalazira, Gift, Paterson, Steve, Nyirenda, Tonney S., and Feasey, Nicholas
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- 2023
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18. A genomic appraisal of invasive Salmonella Typhimurium and associated antibiotic resistance in sub-Saharan Africa
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Van Puyvelde, Sandra, de Block, Tessa, Sridhar, Sushmita, Bawn, Matt, Kingsley, Robert A., Ingelbeen, Brecht, Beale, Mathew A., Barbé, Barbara, Jeon, Hyon Jin, Mbuyi-Kalonji, Lisette, Phoba, Marie-France, Falay, Dadi, Martiny, Delphine, Vandenberg, Olivier, Affolabi, Dissou, Rutanga, Jean Pierre, Ceyssens, Pieter-Jan, Mattheus, Wesley, Cuypers, Wim L., van der Sande, Marianne A. B., Park, Se Eun, Kariuki, Simon, Otieno, Kephas, Lusingu, John P. A., Mbwana, Joyce R., Adjei, Samuel, Sarfo, Anima, Agyei, Seth O., Asante, Kwaku P., Otieno, Walter, Otieno, Lucas, Tahita, Marc C., Lompo, Palpouguini, Hoffman, Irving F., Mvalo, Tisungane, Msefula, Chisomo, Hassan-Hanga, Fatimah, Obaro, Stephen, Mackenzie, Grant, Deborggraeve, Stijn, Feasey, Nicholas, Marks, Florian, MacLennan, Calman A., Thomson, Nicholas R., Jacobs, Jan, Dougan, Gordon, Kariuki, Samuel, and Lunguya, Octavie
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- 2023
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19. A comparison of four epidemic waves of COVID-19 in Malawi; an observational cohort study
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Anscombe, Catherine, Lissauer, Samantha, Thole, Herbert, Rylance, Jamie, Dula, Dingase, Menyere, Mavis, Kutambe, Belson, van der Veer, Charlotte, Phiri, Tamara, Banda, Ndaziona P., Mndolo, Kwazizira S., Mponda, Kelvin, Phiri, Chimota, Mallewa, Jane, Nyirenda, Mulinda, Katha, Grace, Mwandumba, Henry, Gordon, Stephen B., Jambo, Kondwani C., Cornick, Jennifer, Feasey, Nicholas, Barnes, Kayla G., Morton, Ben, and Ashton, Philip M.
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- 2023
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20. Genomics for public health and international surveillance of antimicrobial resistance
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Baker, Kate S, Jauneikaite, Elita, Hopkins, Katie L, Lo, Stephanie W, Sánchez-Busó, Leonor, Getino, Maria, Howden, Benjamin P, Holt, Kathryn E, Musila, Lillian A, Hendriksen, Rene S, Amoako, Daniel G, Aanensen, David M, Okeke, Iruka N, Egyir, Beverly, Nunn, Jamie G, Midega, Janet T, Feasey, Nicholas A, and Peacock, Sharon J
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- 2023
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21. Exploiting genomics for antimicrobial resistance surveillance at One Health interfaces
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Muloi, Dishon M, Jauneikaite, Elita, Anjum, Muna F, Essack, Sabiha Y, Singleton, David A, Kasudi, Mitchelle R, Wade, Matthew J, Egyir, Beverly, Nunn, Jamie G, Midega, Janet T, Peacock, Sharon J, Feasey, Nicholas A, Baker, Kate S, and Zadoks, Ruth N
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- 2023
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22. Innovations in genomic antimicrobial resistance surveillance
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Wheeler, Nicole E, Price, Vivien, Cunningham-Oakes, Edward, Tsang, Kara K, Nunn, Jamie G, Midega, Janet T, Anjum, Muna F, Wade, Matthew J, Feasey, Nicholas A, Peacock, Sharon J, Jauneikaite, Elita, and Baker, Kate S
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- 2023
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23. Evidence review and recommendations for the implementation of genomics for antimicrobial resistance surveillance: reports from an international expert group
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Baker, Kate S, Jauneikaite, Elita, Nunn, Jamie G, Midega, Janet T, Atun, Rifat, Holt, Kathryn E, Walia, Kamini, Howden, Benjamin P, Tate, Heather, Okeke, Iruka N, Carattoli, Alessandra, Hsu, Li Yang, Hopkins, Katie L, Muloi, Dishon M, Wheeler, Nicole E, Aanensen, David M, Mason, Lewis C E, Rodgus, Jonah, Hendriksen, Rene S, Essack, Sabiha Y, Egyir, Beverly, Halpin, Alison L, MacCannell, Duncan R, Campos, Josefina, Srikantiah, Padmini, Feasey, Nicholas A, and Peacock, Sharon J
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- 2023
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24. Genomics for antimicrobial resistance surveillance to support infection prevention and control in health-care facilities
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Jauneikaite, Elita, Baker, Kate S, Nunn, Jamie G, Midega, Janet T, Hsu, Li Yang, Singh, Shweta R, Halpin, Alison L, Hopkins, Katie L, Price, James R, Srikantiah, Padmini, Egyir, Beverly, Okeke, Iruka N, Holt, Kathryn E, Peacock, Sharon J, and Feasey, Nicholas A
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- 2023
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25. Mortality associated with third-generation cephalosporin resistance in Enterobacterales bloodstream infections at eight sub-Saharan African hospitals (MBIRA): a prospective cohort study
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Aliye, Jabir, Assefa, Nega, Edessa, Dumessa, Oundo, Joseph, Berihun, Mulu, Dankwah, Thomas, Osei, Mary M, Fandoh, Maud, Gakpo, Margaret, Mulunda, Caroline, Mvera, Benedict, Chimenya, Mabvuto, Feasey, Nicholas, Mallewa, Jane, Abdulraheem, Khadija, Akujobi, Tobechi A, Okonkwo, Chinelo H, Britz, Luzell, Bulbula, André N H, Fataar, Aaqilah, Mmbaga, Blandina T, Ng'unda, Neema, Chirwa, Uchizi, Kakula, Nyambe, Mutemba, Charles, Nakazwe, Ruth, Aiken, Alexander M, Rehman, Andrea M, de Kraker, Marlieke E A, Madrid, Lola, Kebede, Meron, Labi, Appiah-Korang, Obeng-Nkrumah, Noah, Nyamwaya, Brian, Kagucia, Eunice, Cocker, Derek, Kawaza, Kondwani, Lester, Rebecca, Iregbu, Kenneth C, Medugu, Nubwa, Nwajiobi-Princewill, Philip I, Dramowski, Angela, Sonda, Tolbert, Hemed, Asia, Fwoloshi, Sombo, Ojok, David, Scott, J Anthony G, and Whitelaw, Andrew
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- 2023
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26. Global, regional, and national burden of meningitis and its aetiologies, 1990–2019: a systematic analysis for the Global Burden of Disease Study 2019
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Wunrow, Han Yong, Bender, Rose G, Vongpradith, Avina, Sirota, Sarah Brooke, Swetschinski, Lucien R, Novotney, Amanda, Gray, Authia P, Ikuta, Kevin S, Sharara, Fablina, Wool, Eve E, Aali, Amirali, Abd-Elsalam, Sherief, Abdollahi, Ashkan, Abdul Aziz, Jeza Muhamad, Abidi, Hassan, Aboagye, Richard Gyan, Abolhassani, Hassan, Abu-Gharbieh, Eman, Adamu, Lawan Hassan, Adane, Tigist Demssew, Addo, Isaac Yeboah, Adegboye, Oyelola A, Adekiya, Tayo Alex, Adnan, Mohammad, Adnani, Qorinah Estiningtyas Sakilah, Afzal, Saira, Aghamiri, Shahin, Aghdam, Zahra Babaei, Agodi, Antonella, Ahinkorah, Bright Opoku, Ahmad, Aqeel, Ahmad, Sajjad, Ahmadzade, Mohadese, Ahmed, Ali, Ahmed, Ayman, Ahmed, Jivan Qasim, Ahmed, Meqdad Saleh, Akinosoglou, Karolina, Aklilu, Addis, Akonde, Maxwell, Alahdab, Fares, AL-Ahdal, Tareq Mohammed Ali, Alanezi, Fahad Mashhour, Albelbeisi, Ahmed Hassan, Alemayehu, Tsegaye Begashaw B, Alene, Kefyalew Addis, Al-Eyadhy, Ayman, Al-Gheethi, Adel Ali Saeed, Ali, Abid, Ali, Beriwan Abdulqadir, Ali, Liaqat, Ali, Syed Shujait, Alimohamadi, Yousef, Alipour, Vahid, Aljunid, Syed Mohamed, Almustanyir, Sami, Al-Raddadi, Rajaa M, Alvis-Guzman, Nelson, Al-Worafi, Yaser Mohammed, Aly, Hany, Ameyaw, Edward Kwabena, Ancuceanu, Robert, Ansar, Adnan, Ansari, Golnoosh, Anyasodor, Anayochukwu Edward, Arabloo, Jalal, Aravkin, Aleksandr Y, Areda, Demelash, Artamonov, Anton A, Arulappan, Judie, Aruleba, Raphael Taiwo, Asaduzzaman, Muhammad, Atalell, Kendalem Asmare, Athari, Seyyed Shamsadin, Atlaw, Daniel, Atout, Maha Moh'd Wahbi, Attia, Sameh, Awoke, Tewachew, Ayalew, Melese Kitu, Ayana, Tegegn Mulatu, Ayele, Alemu Degu, Azadnajafabad, Sina, Azizian, Khalil, Badar, Muhammad, Badiye, Ashish D, Baghcheghi, Nayereh, Bagheri, Mahboube, Bagherieh, Sara, Bahadory, Saeed, Baig, Atif Amin, Barac, Aleksandra, Barati, Shirin, Bardhan, Mainak, Basharat, Zarrin, Bashiri, Azadeh, Basnyat, Buddha, Bassat, Quique, Basu, Saurav, Bayileyegn, Nebiyou Simegnew, Bedi, Neeraj, Behnoush, Amir Hossein, Bekel, Abebe Ayalew, Belete, Melaku Ashagrie, Bello, Olorunjuwon Omolaja, Bhagavathula, Akshaya Srikanth, Bhandari, Dinesh, Bhardwaj, Pankaj, Bhaskar, Sonu, Bhat, Ajay Nagesh, Bijani, Ali, Bineshfar, Niloufar, Boloor, Archith, Bouaoud, Souad, Buonsenso, Danilo, Burkart, Katrin, Cámera, Luis Alberto, Castañeda-Orjuela, Carlos A, Cernigliaro, Achille, Charan, Jaykaran, Chattu, Vijay Kumar, Ching, Patrick R, Chopra, Hitesh, Choudhari, Sonali Gajanan, Christopher, Devasahayam J, Chu, Dinh-Toi, Couto, Rosa A S, Cruz-Martins, Natália, Dadras, Omid, Dai, Xiaochen, Dandona, Lalit, Dandona, Rakhi, Das, Saswati, Dash, Nihar Ranjan, Dashti, Mohsen, De la Hoz, Fernando Pio, Debela, Sisay Abebe, Dejen, Demeke, Dejene, Hiwot, Demeke, Dessalegn, Demeke, Feleke Mekonnen, Demessa, Berecha Hundessa, Demetriades, Andreas K, Demissie, Solomon, Dereje, Diriba, Dervišević, Emina, Desai, Hardik Dineshbhai, Dessie, Anteneh Mengist, Desta, Fikreab, Dhama, Kuldeep, Djalalinia, Shirin, Do, Thanh Chi, Dodangeh, Masoud, Dodangeh, Milad, Dominguez, Regina-Mae Villanueva, Dongarwar, Deepa, Dsouza, Haneil Larson, Durojaiye, Oyewole Christopher, Dziedzic, Arkadiusz Marian, Ekat, Martin Herbas, Ekholuenetale, Michael, Ekundayo, Temitope Cyrus, El Sayed Zaki, Maysaa, El-Abid, Hassan, Elhadi, Muhammed, El-Hajj, Victor Gabriel, El-Huneidi, Waseem, El-Sakka, Amro A, Esayas, Hawi Leul, Fagbamigbe, Adeniyi Francis, Falahi, Shahab, Fares, Jawad, Fatehizadeh, Ali, Fatima, Syeda Anum Fatima, Feasey, Nicholas A, Fekadu, Ginenus, Fetensa, Getahun, Feyissa, Desalegn, Fischer, Florian, Foroutan, Behzad, Gaal, Peter Andras, Gadanya, Muktar A, Gaipov, Abduzhappar, Ganesan, Balasankar, Gebrehiwot, Mesfin, Gebrekidan, Kahsu Gebrekirstos, Gebremeskel, Teferi Gebru, Gedef, Getachew Muluye, Gela, Yibeltal Yismaw, Gerema, Urge, Gessner, Bradford D, Getachew, Motuma Erena, Ghadiri, Keyghobad, Ghaffari, Kazem, Ghamari, Seyyed-Hadi, Ghanbari, Reza, Ghazy, Ramy Mohamed Mohmaed, Ghozali, Ghozali, Gizaw, Admasu Belay AB, Glushkova, Ekaterina Vladimirovna, Goldust, Mohamad, Golechha, Mahaveer, Guadie, Habtamu Alganeh, Guled, Rashid Abdi, Gupta, Mohak, Gupta, Sapna, Gupta, Veer Bala, Gupta, Vijai Kumar, Gupta, Vivek Kumar, Hadi, Najah R, Haj-Mirzaian, Arvin, Haller, Sebastian, Hamidi, Samer, Haque, Shafiul, Harapan, Harapan, Hasaballah, Ahmed I, Hasan, Ikramul, Hasani, Hamidreza, Hasanian, Mohammad, Hassankhani, Hadi, Hassen, Mohammed Bheser, Hayat, Khezar, Heidari, Mohammad, Heidari-Foroozan, Mahsa, Heidari-Soureshjani, Reza, Hezam, Kamal, Holla, Ramesh, Horita, Nobuyuki, Hossain, Md Mahbub, Hosseini, Mohammad-Salar, Hosseinzadeh, Mehdi, Hostiuc, Sorin, Hussain, Salman, Hussein, Nawfal R, Ibitoye, Segun Emmanuel, Ilesanmi, Olayinka Stephen, Ilic, Irena M, Ilic, Milena D, Imam, Mohammad Tarique, Iregbu, Kenneth Chukwuemeka, Ismail, Nahlah Elkudssiah, Iwu, Chidozie C D, Jaja, Chinwe, Jakovljevic, Mihajlo, Jamshidi, Elham, Javadi Mamaghani, Amirreza, Javidnia, Javad, Jokar, Mohammad, Jomehzadeh, Nabi, Joseph, Nitin, Joshua, Charity Ehimwenma, Jozwiak, Jacek Jerzy, Kabir, Zubair, Kalankesh, Laleh R, Kalhor, Rohollah, Kamal, Vineet Kumar, Kandel, Himal, Karaye, Ibraheem M, Karch, André, Karimi, Hanie, Kaur, Harkiran, Kaur, Navjot, Keykhaei, Mohammad, Khajuria, Himanshu, Khalaji, Amirmohammad, Khan, Ajmal, Khan, Imteyaz A, Khan, Maseer, Khan, Taimoor, Khatab, Khaled, Khatatbeh, Moawiah Mohammad, Khayat Kashani, Hamid Reza, Khubchandani, Jagdish, Kim, Min Seo, Kisa, Adnan, Kisa, Sezer, Kompani, Farzad, Koohestani, Hamid Reza, Kothari, Nikhil, Krishan, Kewal, Krishnamoorthy, Yuvaraj, Kulimbet, Mukhtar, Kumar, Manoj, Kumaran, Senthil D, Kuttikkattu, Ambily, Kwarteng, Alexander, Laksono, Tri, Landires, Iván, Laryea, Dennis Odai, Lawal, Basira Kankia, Le, Thao Thi Thu, Ledda, Caterina, Lee, Sang-woong, Lee, Seung, Lema, Gebretsadik Kiros, Levi, Miriam, Lim, Stephen S, Liu, Xuefeng, Lopes, Graciliana, Lutzky Saute, Ricardo, Machado Teixeira, Pedro Henrique, Mahmoodpoor, Ata, Mahmoud, Mansour Adam, Malakan Rad, Elaheh, Malhotra, Kashish, Malik, Ahmad Azam, Martinez-Guerra, Bernardo Alfonso, Martorell, Miquel, Mathur, Vasundhara, Mayeli, Mahsa, Medina, John Robert Carabeo, Melese, Addisu, Memish, Ziad A, Mentis, Alexios-Fotios A, Merza, Muayad Aghali, Mestrovic, Tomislav, Michalek, Irmina Maria, Minh, Le Huu Nhat, Mirahmadi, Alireza, Mirmosayyeb, Omid, Misganaw, Awoke, Misra, Arup Kumar, Moghadasi, Javad, Mohamed, Nouh Saad, Mohammad, Yousef, Mohammadi, Esmaeil, Mohammed, Shafiu, Mojarrad Sani, Maryam, Mojiri-forushani, Hoda, Mokdad, Ali H, Momtazmanesh, Sara, Monasta, Lorenzo, Moni, Mohammad Ali, Mossialos, Elias, Mostafavi, Ebrahim, Motaghinejad, Majid, Mousavi Khaneghah, Amin, Mubarik, Sumaira, Muccioli, Lorenzo, Muhammad, Jibran Sualeh, Mulita, Francesk, Mulugeta, Temesgen, Murillo-Zamora, Efrén, Mustafa, Ghulam, Muthupandian, Saravanan, Nagarajan, Ahamarshan Jayaraman, Nainu, Firzan, Nair, Tapas Sadasivan, Nargus, Shumaila, Nassereldine, Hasan, Natto, Zuhair S, Nayak, Biswa Prakash, Negoi, Ionut, Negoi, Ruxandra Irina, Nejadghaderi, Seyed Aria, Nguyen, Hien Quang, Nguyen, Phat Tuan, Nguyen, Van Thanh, Niazi, Robina Khan, Noroozi, Nafise, Nouraei, Hasti, Nuñez-Samudio, Virginia, Nuruzzaman, Khan M, Nwatah, Vincent Ebuka, Nzoputam, Chimezie Igwegbe, Nzoputam, Ogochukwu Janet, Oancea, Bogdan, Obaidur, Rahman Md, Odetokun, Ismail A, Ogunsakin, Ropo Ebenezer, Okonji, Osaretin Christabel, Olagunju, Andrew T, Olana, Latera Tesfaye, Olufadewa, Isaac Iyinoluwa, Oluwafemi, Yinka Doris, Oumer, Kemal Sherefa, Ouyahia, Amel, P A, Mahesh, Pakshir, Keyvan, Palange, Padmavali Nanaji, Pardhan, Shahina, Parikh, Romil R, Patel, Jay, Patel, Urvish K, Patil, Shankargouda, Paudel, Uttam, Pawar, Shrikant, Pensato, Umberto, Perdigão, João, Pereira, Marcos, Peres, Mario F P, Petcu, Ionela-Roxana, Pinheiro, Marina, Piracha, Zahra Zahid, Pokhrel, Nayanum, Postma, Maarten J, Prates, Elton Junio Sady, Qattea, Ibrahim, Raghav, Pankaja Raghav, Rahbarnia, Leila, Rahimi-Movaghar, Vafa, Rahman, Mosiur, Rahman, Muhammad Aziz, Rahmanian, Vahid, Rahnavard, Niloufar, Ramadan, Hazem, Ramasubramani, Premkumar, Rani, Usha, Rao, Indu Ramachandra, Rapaka, Deepthi, Ratan, Zubair Ahmed, Rawaf, Salman, Redwan, Elrashdy Moustafa Mohamed, Reiner Jr, Robert C, Rezaei, Nazila, Riad, Abanoub, Ribeiro da Silva, Tércia Moreira, Roberts, Tamalee, Robles Aguilar, Gisela, Rodriguez, Jefferson Antonio Buendia, Rosenthal, Victor Daniel, Saddik, Basema, Sadeghian, Saeid, Saeed, Umar, Safary, Azam, Saheb Sharif-Askari, Fatemeh, Saheb Sharif-Askari, Narjes, Sahebkar, Amirhossein, Sahu, Monalisha, Sajedi, Seyed Aidin, Saki, Morteza, Salahi, Saina, Salahi, Sarvenaz, Saleh, Mohamed A, Sallam, Malik, Samadzadeh, Sara, Samy, Abdallah M, Sanjeev, Rama Krishna, Satpathy, Maheswar, Seylani, Allen, Sha'aban, Abubakar, Shafie, Mahan, Shah, Pritik A, Shahrokhi, Shayan, Shahzamani, Kiana, Shaikh, Masood Ali, Sham, Sunder, Shannawaz, Mohammed, Sheikh, Aziz, Shenoy, Suchitra M, Shetty, Pavanchand H, Shin, Jae Il, Shokri, Fereshteh, Shorofi, Seyed Afshin, Shrestha, Sunil, Sibhat, Migbar Mekonnen, Siddig, Emmanuel Edwar, Silva, Luís Manuel Lopes Rodrigues, Singh, Harpreet, Singh, Jasvinder A, Singh, Paramdeep, Singh, Surjit, Sinto, Robert, Skryabina, Anna Aleksandrovna, Socea, Bogdan, Sokhan, Anton, Solanki, Ranjan, Solomon, Yonatan, Sood, Prashant, Soshnikov, Sergey, Stergachis, Andy, Sufiyan, Mu'awiyyah Babale, Suliankatchi Abdulkader, Rizwan, Sultana, Abida, T Y, Sree Sudha, Taheri, Ensiyeh, Taki, Elahe, Tamuzi, Jacques JL Lukenze, Tan, Ker-Kan, Tat, Nathan Y, Temsah, Mohamad-Hani, Terefa, Dufera Rikitu, Thangaraju, Pugazhenthan, Tibebu, Nigusie Selomon, Ticoalu, Jansje Henny Vera, Tillawi, Tala, Tincho, Marius Belmondo, Tleyjeh, Imad I, Toghroli, Razie, Tovani-Palone, Marcos Roberto, Tufa, Derara Girma, Turner, Paul, Ullah, Irfan, Umeokonkwo, Chukwuma David, Unnikrishnan, Bhaskaran, Vahabi, Seyed Mohammad, Vaithinathan, Asokan Govindaraj, Valizadeh, Rohollah, Varthya, Shoban Babu, Vos, Theo, Waheed, Yasir, Walde, Mandaras Tariku, Wang, Cong, Weerakoon, Kosala Gayan, Wickramasinghe, Nuwan Darshana, Winkler, Andrea Sylvia, Woldemariam, Melat, Worku, Nahom Alemseged, Wright, Claire, Yada, Dereje Y, Yaghoubi, Sajad, Yahya, Gahin Abdulraheem Tayib Yahya, Yenew, Chalachew Yenew Yenew, Yesiltepe, Metin, Yi, Siyan, Yiğit, Vahit, You, Yuyi, Yusuf, Hadiza, Zakham, Fathiah, Zaman, Muhammad, Zaman, Sojib Bin, Zare, Iman, Zareshahrabadi, Zahra, Zarrintan, Armin, Zastrozhin, Mikhail Sergeevich, Zhang, Haijun, Zhang, Jingya, Zhang, Zhi-Jiang, Zheng, Peng, Zoladl, Mohammad, Zumla, Alimuddin, Hay, Simon I, Murray, Christopher J L, Naghavi, Mohsen, and Kyu, Hmwe Hmwe
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- 2023
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27. Investigating One Health risks for human colonisation with extended spectrum β-lactamase-producing Escherichia coli and Klebsiella pneumoniae in Malawian households: a longitudinal cohort study
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Cocker, Derek, Chidziwisano, Kondwani, Mphasa, Madalitso, Mwapasa, Taonga, Lewis, Joseph M, Rowlingson, Barry, Sammarro, Melodie, Bakali, Winnie, Salifu, Chifundo, Zuza, Allan, Charles, Mary, Mandula, Tamandani, Maiden, Victor, Amos, Stevie, Jacob, Shevin T, Kajumbula, Henry, Mugisha, Lawrence, Musoke, David, Byrne, Rachel, Edwards, Thomas, Lester, Rebecca, Elviss, Nicola, Roberts, Adam P, Singer, Andrew C, Jewell, Christopher, Morse, Tracy, and Feasey, Nicholas A
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- 2023
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28. Ending AIDS deaths requires improvements in clinical care for people with advanced HIV disease who are seriously ill
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Burke, Rachael M, Feasey, Nicholas, Rangaraj, Ajay, Camps, Maria Ruano, Meintjes, Graeme, El-Sadr, Wafaa M, and Ford, Nathan
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- 2023
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29. Colonization dynamics of extended-spectrum beta-lactamase-producing Enterobacterales in the gut of Malawian adults
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Lewis, Joseph M., Mphasa, Madalitso, Banda, Rachel, Beale, Mathew A., Heinz, Eva, Mallewa, Jane, Jewell, Christopher, Faragher, Brian, Thomson, Nicholas R., and Feasey, Nicholas A.
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- 2022
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30. Omicron B.1.1.529 variant infections associated with severe disease are uncommon in a COVID-19 under-vaccinated, high SARS-CoV-2 seroprevalence population in Malawi
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Mseka, Upendo L., Mandolo, Jonathan, Nyoni, Kenneth, Divala, Oscar, Kambalame, Dzinkambani, Mapemba, Daniel, Kamzati, Moses, Chibwe, Innocent, Henrion, Marc Y.R., Manda, Kingsley, Thindwa, Deus, Mvula, Memory, Odala, Bright, Kamng'ona, Raphael, Dzinza, Nelson, Jere, Khuzwayo C., Feasey, Nicholas, Ho, Antonia, Amoah, Abena S., Gordon, Melita, Swarthout, Todd D., Crampin, Amelia, Heyderman, Robert S., Kagoli, Matthew, Chitsa-Banda, Evelyn, Mitambo, Collins, Phuka, John, Chilima, Benson, Kasambara, Watipaso, Jambo, Kondwani C., and Chauma-Mwale, Annie
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- 2023
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31. Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis
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Murray, Christopher J L, Ikuta, Kevin Shunji, Sharara, Fablina, Swetschinski, Lucien, Robles Aguilar, Gisela, Gray, Authia, Han, Chieh, Bisignano, Catherine, Rao, Puja, Wool, Eve, Johnson, Sarah C, Browne, Annie J, Chipeta, Michael Give, Fell, Frederick, Hackett, Sean, Haines-Woodhouse, Georgina, Kashef Hamadani, Bahar H, Kumaran, Emmanuelle A P, McManigal, Barney, Achalapong, Sureeruk, Agarwal, Ramesh, Akech, Samuel, Albertson, Samuel, Amuasi, John, Andrews, Jason, Aravkin, Aleskandr, Ashley, Elizabeth, Babin, François-Xavier, Bailey, Freddie, Baker, Stephen, Basnyat, Buddha, Bekker, Adrie, Bender, Rose, Berkley, James A, Bethou, Adhisivam, Bielicki, Julia, Boonkasidecha, Suppawat, Bukosia, James, Carvalheiro, Cristina, Castañeda-Orjuela, Carlos, Chansamouth, Vilada, Chaurasia, Suman, Chiurchiù, Sara, Chowdhury, Fazle, Clotaire Donatien, Rafai, Cook, Aislinn J, Cooper, Ben, Cressey, Tim R, Criollo-Mora, Elia, Cunningham, Matthew, Darboe, Saffiatou, Day, Nicholas P J, De Luca, Maia, Dokova, Klara, Dramowski, Angela, Dunachie, Susanna J, Duong Bich, Thuy, Eckmanns, Tim, Eibach, Daniel, Emami, Amir, Feasey, Nicholas, Fisher-Pearson, Natasha, Forrest, Karen, Garcia, Coralith, Garrett, Denise, Gastmeier, Petra, Giref, Ababi Zergaw, Greer, Rachel Claire, Gupta, Vikas, Haller, Sebastian, Haselbeck, Andrea, Hay, Simon I, Holm, Marianne, Hopkins, Susan, Hsia, Yingfen, Iregbu, Kenneth C, Jacobs, Jan, Jarovsky, Daniel, Javanmardi, Fatemeh, Jenney, Adam W J, Khorana, Meera, Khusuwan, Suwimon, Kissoon, Niranjan, Kobeissi, Elsa, Kostyanev, Tomislav, Krapp, Fiorella, Krumkamp, Ralf, Kumar, Ajay, Kyu, Hmwe Hmwe, Lim, Cherry, Lim, Kruy, Limmathurotsakul, Direk, Loftus, Michael James, Lunn, Miles, Ma, Jianing, Manoharan, Anand, Marks, Florian, May, Jürgen, Mayxay, Mayfong, Mturi, Neema, Munera-Huertas, Tatiana, Musicha, Patrick, Musila, Lilian A, Mussi-Pinhata, Marisa Marcia, Naidu, Ravi Narayan, Nakamura, Tomoka, Nanavati, Ruchi, Nangia, Sushma, Newton, Paul, Ngoun, Chanpheaktra, Novotney, Amanda, Nwakanma, Davis, Obiero, Christina W, Ochoa, Theresa J, Olivas-Martinez, Antonio, Olliaro, Piero, Ooko, Ednah, Ortiz-Brizuela, Edgar, Ounchanum, Pradthana, Pak, Gideok D, Paredes, Jose Luis, Peleg, Anton Yariv, Perrone, Carlo, Phe, Thong, Phommasone, Koukeo, Plakkal, Nishad, Ponce-de-Leon, Alfredo, Raad, Mathieu, Ramdin, Tanusha, Rattanavong, Sayaphet, Riddell, Amy, Roberts, Tamalee, Robotham, Julie Victoria, Roca, Anna, Rosenthal, Victor Daniel, Rudd, Kristina E, Russell, Neal, Sader, Helio S, Saengchan, Weerawut, Schnall, Jesse, Scott, John Anthony Gerard, Seekaew, Samroeng, Sharland, Mike, Shivamallappa, Madhusudhan, Sifuentes-Osornio, Jose, Simpson, Andrew J, Steenkeste, Nicolas, Stewardson, Andrew James, Stoeva, Temenuga, Tasak, Nidanuch, Thaiprakong, Areerat, Thwaites, Guy, Tigoi, Caroline, Turner, Claudia, Turner, Paul, van Doorn, H Rogier, Velaphi, Sithembiso, Vongpradith, Avina, Vongsouvath, Manivanh, Vu, Huong, Walsh, Timothy, Walson, Judd L, Waner, Seymour, Wangrangsimakul, Tri, Wannapinij, Prapass, Wozniak, Teresa, Young Sharma, Tracey E M W, Yu, Kalvin C, Zheng, Peng, Sartorius, Benn, Lopez, Alan D, Stergachis, Andy, Moore, Catrin, Dolecek, Christiane, and Naghavi, Mohsen
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- 2022
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32. Development, confirmation, and application of a seeded Escherichia coli process control organism to validate Salmonella enterica serovar Typhi environmental surveillance methods
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Philo, Sarah E., primary, Zhou, Nicolette A., additional, Lillis, Lorraine M., additional, Raghava, Venkata, additional, Abraham, Dilip, additional, Kumar, Vinoth, additional, Kumar, Nirmal, additional, Rigby, Jonathan, additional, Harrison, Joanna Ciol, additional, Fagnant-Sperati, Christine S., additional, Kossik, Alexandra L., additional, Ong, Angelo Q. W., additional, Swanstrom, Rachael, additional, Burnor, Elisabeth, additional, Demeke, Bethel, additional, Beck, Nicola K., additional, Shirai, Jeffry H., additional, Libby, Stephen J., additional, Boyle, David S., additional, Feasey, Nicholas, additional, Kang, Gagandeep, additional, and Meschke, John Scott, additional
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- 2024
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33. Optimised methods for the targeted surveillance of extended-spectrum beta-lactamase producing Escherichia coli in human stool
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Gallichan, Sarah, primary, Forrest, Sally, additional, Picton-Barlow, Esther, additional, McKeown, Claudia, additional, Moore, Maria, additional, Heinz, Eva, additional, Feasey, Nicholas A, additional, Lewis, Joseph M, additional, and Graf, Fabrice E, additional
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- 2024
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34. A novel air-dried multiplex high-resolution melt assay for the detection of extended-spectrum β-lactamase and carbapenemase genes
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Cubas-Atienzar, Ana I., Williams, Christopher T., Karkey, Abhilasha, Dongol, Sabina, Sulochana, Manandhar, Rajendra, Shrestha, Hobbs, Glyn, Evans, Katie, Musicha, Patrick, Feasey, Nicholas, Cuevas, Luis E., Adams, Emily R., and Edwards, Thomas
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- 2021
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35. Healthcare-associated infections and antimicrobial use in surgical wards of a large urban central hospital in Blantyre, Malawi: a point prevalence survey
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Bunduki, Gabriel Kambale, Feasey, Nicholas, Henrion, Marc Y.R., Noah, Patrick, and Musaya, Janelisa
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- 2021
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36. Laboratory informatics capacity for effective antimicrobial resistance surveillance in resource-limited settings
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Turner, Paul, Rupali, Priscilla, Opintan, Japheth A, Jaoko, Walter, Feasey, Nicholas A, Peacock, Sharon J, and Ashley, Elizabeth A
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- 2021
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37. WHO global research priorities for antimicrobial resistance in human health
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Bertagnolio, Silvia, Dobreva, Zlatina, Centner, Chad M, Olaru, Ioana Diana, Donà, Daniele, Burzo, Stefano, Huttner, Benedikt D, Chaillon, Antoine, Gebreselassie, Nebiat, Wi, Teodora, Hasso-Agopsowicz, Mateusz, Allegranzi, Benedetta, Sati, Hatim, Ivanovska, Verica, Kothari, Kavita U, Balkhy, Hanan H, Cassini, Alessandro, Hamers, Raph L, Weezenbeek, Kitty Van, Aanensen, David, Alanio, Alexandre, Alastruey-Izquierdo, Ana, Alemayehu, Tinsae, Al-Hasan, Majdi, Allegaert, Karel, Al-Maani, Amal Saif, Al-Salman, Jameela, Alshukairi, Abeer Nizar, Amir, Afreenish, Applegate, Tanya, Araj, George F, Villalobos, Marlen Arce, Årdal, Christine, Ashiru-Oredope, Diane, Ashley, Elizabeth A, Babin, François-Xavier, Bachmann, Laura H, Bachmann, Till, Baker, Kate Susan, Balasegaram, Manica, Bamford, Colleen, Baquero, Fernando, Barcelona, Laura Isabel, Bassat, Quique, Bassetti, Matteo, Basu, Sulagna, Beardsley, Justin, Vásquez, Grey Benoit, Berkley, James A, Bhatnagar, Anuj K, Bielicki, Julia, Bines, Julie, Bongomin, Felix, Bonomo, Robert A, Bradley, John S, Bradshaw, Catriona, Brett, Ana, Brink, Adrian, Brown, Colin, Brown, Jeremy, Buising, Kirsty, Carson, Carolee, Carvalho, Anna Cristina, Castagnola, Elio, Cavaleri, Marco, Cecchini, Michele, Chabala, Chishala, Chaisson, Richard E, Chakrabarti, Arunaloke, Chandler, Clare, Chandy, Sujith John, Charani, Esmita, Chen, Lisa, Chiara, Francesca, Chowdhary, Anuradha, Chua, Arlene, Chuki, Pem, Chun, Doo Ryeon, Churchyard, Gavin, Cirillo, Daniela, Clack, Lauren, Coffin, Susan E, Cohn, Jennifer, Cole, Michelle, Conly, John, Cooper, Ben, Corso, Alejandra, Cosgrove, Sara E, Cox, Helen, Daley, Charles L, Darboe, Saffiatou, Darton, Tom, Davies, Gerry, de Egea, Viviana, Dedeić-Ljubović, Amela, Deeves, Miranda, Denkinger, Claudia, Dillon, Jo-Anne R, Dramowski, Angela, Eley, Brian, Roberta Esposito, Susanna Maria, Essack, Sabiha Y, Farida, Helmia, Farooqi, Joveria, Feasey, Nicholas, Ferreyra, Cecilia, Fifer, Helen, Finlayson, Heather, Frick, Mike, Gales, Ana Cristina, Galli, Luisa, Gandra, Sumanth, Gerber, Jeffrey S, Giske, Christian, Gordon, Bruce, Govender, Nelesh, Guessennd, Nathalie, Guindo, Ibrehima, Gurbanova, Elmira, Gwee, Amanda, Hagen, Ferry, Harbarth, Stephan, Haze, John, Heim, Jutta, Hendriksen, Rene, Heyderman, Robert Simon, Holt, Kathryn Elizabeth, Hönigl, Martin, Hook, Edward W, Hope, William, Hopkins, Heidi, Hughes, Gwenda, Ismail, Ghada, Issack, Mohammad Iqbal, Jacobs, Jan, Jasovský, Dušan, Jehan, Fyeza, Pearson, Antonieta Jimenez, Jones, Makoto, Joshi, Mohan P, Kapil, Arti, Kariuki, Samuel, Karkey, Abhilasha, Kearns, Gregory L, Keddy, Karen Helena, Khanna, Nina, Kitamura, Akiko, Kolho, Kaija-Leena, Kontoyiannis, Dimitrios P, Kotwani, Anita, Kozlov, Roman S, Kranzer, Katharina, Kularatne, Ranmini, Lahra, Monica M, Langford, Bradley J, Laniado-Laborin, Rafael, Larsson, Joakim, Lass-Flörl, Cornelia, Le Doare, Kirsty, Lee, Hyukmin, Lessa, Fernanda, Levin, Anna S, Limmathurotsakul, Direk, Lincopan, Nilton, Lo Vecchio, Andrea, Lodha, Rakesh, Loeb, Mark, Longtin, Yves, Lye, David Chien, Mahmud, Asif Mujtaba, Manaia, Célia, Manderson, Lenore, Mareković, Ivana, Marimuthu, Kalisvar, Martin, Irene, Mashe, Tapfumanei, Mei, Zeng, Meis, Jacques F, Lyra Tavares De Melo, Flávio Augusto, Mendelson, Marc, Miranda, Angelica Espinosa, Moore, David, Morel, Chantal, Moremi, Nyambura, Moro, Maria Luisa, Moussy, Francis, Mshana, Stephen, Mueller, Arno, Ndow, Francis J, Nicol, Mark, Nunn, Andrew, Obaro, Stephen, Obiero, Christina W, Okeke, Iruka N, Okomo, Uduak, Okwor, Tochi J, Oladele, Rita, Omulo, Sylvia, Ondoa, Pascale, Ortellado de Canese, Juana Medarda, Ostrosky-Zeichner, Luis, Padoveze, Maria Clara, Pai, Madhukar, Park, Benjamin, Parkhill, Julian, Parry, Christopher M, Peeling, Rosanna, Sobreira Vieira Peixe, Luísa Maria, Perovic, Olga, Pettigrew, Melinda M, Principi, Nicola, Pulcini, Céline, Puspandari, Nelly, Rawson, Timothy, Reddy, Denasha Lavanya, Reddy, Kessendri, Redner, Paulo, Rodríguez Tudela, Juan Luis, Rodríguez-Baño, Jesús, Van Katwyk, Susan Rogers, Roilides, Emmanuel, Rollier, Christine, Rollock, Leslie, Ronat, Jean-Baptiste, Ruppe, Etienne, Sadarangani, Manish, Salisbury, David, Salou, Mounerou, Samison, Luc Hervé, Sanguinetti, Maurizio, Sartelli, Massimo, Schellack, Natalie, Schouten, Jeroen, Schwaber, Mitchell J, Seni, Jeremiah, Senok, Abiola, Shafer, William M, Shakoor, Sadia, Sheppard, Donald, Shin, Jong-Hee, Sia, Sonia, Sievert, Dawn, Singh, Ishwar, Singla, Rupak, Skov, Robert Leo, Soge, Olusegun O, Sprute, Rosanne, Srinivasan, Arjun, Srinivasan, Subasree, Sundsfjord, Arnfinn, Tacconelli, Evelina, Tahseen, Sabira, Tangcharoensathien, Viroj, Tängdén, Thomas, Thursky, Karin, Thwaites, Guy, Tigulini de Souza Peral, Renata, Tong, Deborah, Tootla, Hafsah Deepa, Tsioutis, Constantinos, Turner, Katy M, Turner, Paul, Omar, Shaheed Vally, van de Sande, Wendy WJ, van den Hof, Susan, van Doorn, Rogier, Veeraraghavan, Balaji, Verweij, Paul, Wahyuningsih, Retno, Wang, Hui, Warris, Adilia, Weinstock, Hillard, Wesangula, Evelyn, Whiley, David, White, Peter J, Williams, Phoebe, Xiao, Yonghong, Moscoso, Martin Yagui, Yang, Hsu Li, Yoshida, Sachiyo, Yu, Yunsong, Żabicka, Dorota, Zignol, Matteo, Bertagnolio, Silvia, Dobreva, Zlatina, Centner, Chad M, Olaru, Ioana Diana, Donà, Daniele, Burzo, Stefano, Huttner, Benedikt D, Chaillon, Antoine, Gebreselassie, Nebiat, Wi, Teodora, Hasso-Agopsowicz, Mateusz, Allegranzi, Benedetta, Sati, Hatim, Ivanovska, Verica, Kothari, Kavita U, Balkhy, Hanan H, Cassini, Alessandro, Hamers, Raph L, Weezenbeek, Kitty Van, Aanensen, David, Alanio, Alexandre, Alastruey-Izquierdo, Ana, Alemayehu, Tinsae, Al-Hasan, Majdi, Allegaert, Karel, Al-Maani, Amal Saif, Al-Salman, Jameela, Alshukairi, Abeer Nizar, Amir, Afreenish, Applegate, Tanya, Araj, George F, Villalobos, Marlen Arce, Årdal, Christine, Ashiru-Oredope, Diane, Ashley, Elizabeth A, Babin, François-Xavier, Bachmann, Laura H, Bachmann, Till, Baker, Kate Susan, Balasegaram, Manica, Bamford, Colleen, Baquero, Fernando, Barcelona, Laura Isabel, Bassat, Quique, Bassetti, Matteo, Basu, Sulagna, Beardsley, Justin, Vásquez, Grey Benoit, Berkley, James A, Bhatnagar, Anuj K, Bielicki, Julia, Bines, Julie, Bongomin, Felix, Bonomo, Robert A, Bradley, John S, Bradshaw, Catriona, Brett, Ana, Brink, Adrian, Brown, Colin, Brown, Jeremy, Buising, Kirsty, Carson, Carolee, Carvalho, Anna Cristina, Castagnola, Elio, Cavaleri, Marco, Cecchini, Michele, Chabala, Chishala, Chaisson, Richard E, Chakrabarti, Arunaloke, Chandler, Clare, Chandy, Sujith John, Charani, Esmita, Chen, Lisa, Chiara, Francesca, Chowdhary, Anuradha, Chua, Arlene, Chuki, Pem, Chun, Doo Ryeon, Churchyard, Gavin, Cirillo, Daniela, Clack, Lauren, Coffin, Susan E, Cohn, Jennifer, Cole, Michelle, Conly, John, Cooper, Ben, Corso, Alejandra, Cosgrove, Sara E, Cox, Helen, Daley, Charles L, Darboe, Saffiatou, Darton, Tom, Davies, Gerry, de Egea, Viviana, Dedeić-Ljubović, Amela, Deeves, Miranda, Denkinger, Claudia, Dillon, Jo-Anne R, Dramowski, Angela, Eley, Brian, Roberta Esposito, Susanna Maria, Essack, Sabiha Y, Farida, Helmia, Farooqi, Joveria, Feasey, Nicholas, Ferreyra, Cecilia, Fifer, Helen, Finlayson, Heather, Frick, Mike, Gales, Ana Cristina, Galli, Luisa, Gandra, Sumanth, Gerber, Jeffrey S, Giske, Christian, Gordon, Bruce, Govender, Nelesh, Guessennd, Nathalie, Guindo, Ibrehima, Gurbanova, Elmira, Gwee, Amanda, Hagen, Ferry, Harbarth, Stephan, Haze, John, Heim, Jutta, Hendriksen, Rene, Heyderman, Robert Simon, Holt, Kathryn Elizabeth, Hönigl, Martin, Hook, Edward W, Hope, William, Hopkins, Heidi, Hughes, Gwenda, Ismail, Ghada, Issack, Mohammad Iqbal, Jacobs, Jan, Jasovský, Dušan, Jehan, Fyeza, Pearson, Antonieta Jimenez, Jones, Makoto, Joshi, Mohan P, Kapil, Arti, Kariuki, Samuel, Karkey, Abhilasha, Kearns, Gregory L, Keddy, Karen Helena, Khanna, Nina, Kitamura, Akiko, Kolho, Kaija-Leena, Kontoyiannis, Dimitrios P, Kotwani, Anita, Kozlov, Roman S, Kranzer, Katharina, Kularatne, Ranmini, Lahra, Monica M, Langford, Bradley J, Laniado-Laborin, Rafael, Larsson, Joakim, Lass-Flörl, Cornelia, Le Doare, Kirsty, Lee, Hyukmin, Lessa, Fernanda, Levin, Anna S, Limmathurotsakul, Direk, Lincopan, Nilton, Lo Vecchio, Andrea, Lodha, Rakesh, Loeb, Mark, Longtin, Yves, Lye, David Chien, Mahmud, Asif Mujtaba, Manaia, Célia, Manderson, Lenore, Mareković, Ivana, Marimuthu, Kalisvar, Martin, Irene, Mashe, Tapfumanei, Mei, Zeng, Meis, Jacques F, Lyra Tavares De Melo, Flávio Augusto, Mendelson, Marc, Miranda, Angelica Espinosa, Moore, David, Morel, Chantal, Moremi, Nyambura, Moro, Maria Luisa, Moussy, Francis, Mshana, Stephen, Mueller, Arno, Ndow, Francis J, Nicol, Mark, Nunn, Andrew, Obaro, Stephen, Obiero, Christina W, Okeke, Iruka N, Okomo, Uduak, Okwor, Tochi J, Oladele, Rita, Omulo, Sylvia, Ondoa, Pascale, Ortellado de Canese, Juana Medarda, Ostrosky-Zeichner, Luis, Padoveze, Maria Clara, Pai, Madhukar, Park, Benjamin, Parkhill, Julian, Parry, Christopher M, Peeling, Rosanna, Sobreira Vieira Peixe, Luísa Maria, Perovic, Olga, Pettigrew, Melinda M, Principi, Nicola, Pulcini, Céline, Puspandari, Nelly, Rawson, Timothy, Reddy, Denasha Lavanya, Reddy, Kessendri, Redner, Paulo, Rodríguez Tudela, Juan Luis, Rodríguez-Baño, Jesús, Van Katwyk, Susan Rogers, Roilides, Emmanuel, Rollier, Christine, Rollock, Leslie, Ronat, Jean-Baptiste, Ruppe, Etienne, Sadarangani, Manish, Salisbury, David, Salou, Mounerou, Samison, Luc Hervé, Sanguinetti, Maurizio, Sartelli, Massimo, Schellack, Natalie, Schouten, Jeroen, Schwaber, Mitchell J, Seni, Jeremiah, Senok, Abiola, Shafer, William M, Shakoor, Sadia, Sheppard, Donald, Shin, Jong-Hee, Sia, Sonia, Sievert, Dawn, Singh, Ishwar, Singla, Rupak, Skov, Robert Leo, Soge, Olusegun O, Sprute, Rosanne, Srinivasan, Arjun, Srinivasan, Subasree, Sundsfjord, Arnfinn, Tacconelli, Evelina, Tahseen, Sabira, Tangcharoensathien, Viroj, Tängdén, Thomas, Thursky, Karin, Thwaites, Guy, Tigulini de Souza Peral, Renata, Tong, Deborah, Tootla, Hafsah Deepa, Tsioutis, Constantinos, Turner, Katy M, Turner, Paul, Omar, Shaheed Vally, van de Sande, Wendy WJ, van den Hof, Susan, van Doorn, Rogier, Veeraraghavan, Balaji, Verweij, Paul, Wahyuningsih, Retno, Wang, Hui, Warris, Adilia, Weinstock, Hillard, Wesangula, Evelyn, Whiley, David, White, Peter J, Williams, Phoebe, Xiao, Yonghong, Moscoso, Martin Yagui, Yang, Hsu Li, Yoshida, Sachiyo, Yu, Yunsong, Żabicka, Dorota, and Zignol, Matteo
- Abstract
The WHO research agenda for antimicrobial resistance (AMR) in human health has identified 40 research priorities to be addressed by the year 2030. These priorities focus on bacterial and fungal pathogens of crucial importance in addressing AMR, including drug-resistant pathogens causing tuberculosis. These research priorities encompass the entire people-centred journey, covering prevention, diagnosis, and treatment of antimicrobial-resistant infections, in addition to addressing the overarching knowledge gaps in AMR epidemiology, burden and drivers, policies and regulations, and awareness and education. The research priorities were identified through a multistage process, starting with a comprehensive scoping review of knowledge gaps, with expert inputs gathered through a survey and open call. The priority setting involved a rigorous modified Child Health and Nutrition Research Initiative approach, ensuring global representation and applicability of the findings. The ultimate goal of this research agenda is to encourage research and investment in the generation of evidence to better understand AMR dynamics and facilitate policy translation for reducing the burden and consequences of AMR.
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- 2024
38. Environmental surveillance for Salmonella Typhi in rivers and wastewater from an informal sewage network in Blantyre, Malawi.
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Uzzell, Christopher B., Gray, Elizabeth, Rigby, Jonathan, Troman, Catherine M., Diness, Yohane, Mkwanda, Charity, Tonthola, Katalina, Kanjerwa, Oscar, Salifu, Chifundo, Nyirenda, Tonney, Chilupsya, Chisomo, Msefula, Chisomo, Elviss, Nicola, Grassly, Nicholas C., and Feasey, Nicholas A.
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SALMONELLA typhi ,PUBLIC health ,MIXED-use developments ,RIVER channels ,WATERSHEDS ,TYPHOID fever - Abstract
Environmental surveillance for Salmonella Typhi may provide information on the community-level dynamics of typhoid fever in resource poor regions experiencing high disease burden. Many knowledge gaps concerning the feasibility of ES remain, especially in areas lacking formal sewage systems. We implemented protocols for S. Typhi ES, including site selection and catchment population estimation, sample concentration and testing using qPCR for S. Typhi specific gene targets. Between May 2021 and May 2022, we collected grab samples and Moore swabs from 43 sites in Blantyre, Malawi. Catchment characteristics, water quality, and human faecal contamination (qPCR for Bacteroides HF183) were also recorded. Their association with S. Typhi detection was investigated using a logistic mixed-effects regression analysis. Prevalence of S. Typhi in ES samples was 2.1% (1.1–4.0%) and 3.9% (1.9–7.9%) for grab and Moore swab samples, respectively. HF183 was associated S. Typhi positivity, with a unit increase in log genome copies/microlitre increasing the odds of detection of S. Typhi by 1.56 (95% CI: 1.29–1.89) and 1.33 (1.10–1.61) in Moore swabs and grab samples, respectively. The location and timing of S. Typhi detection through ES was not associated with the incidence of typhoid fever reported in associated catchment populations. During this period of relatively low typhoid fever incidence, wastewater surveillance continued to detect S. Typhi in human sewage and wastewater suggesting that ES using natural river systems can be a sensitive indicator of transmission. Author summary: Typhoid fever is a major public health concern throughout many low- and middle-income countries, resulting in significant morbidity and mortality. In recent years, two typhoid-conjugate vaccines have been pre-qualified, with the World Health Organization recommending their targeted use in high incidence, endemic regions. However, quality assured information on the spatio-temporal distribution of typhoid fever is lacking, and scale-up of typhoid vaccination is progressing slowly. Environmental surveillance for Salmonella Typhi in sewage and wastewater may be a cost-effective and scalable approach to identify high-burden regions, thereby motivating vaccine introduction. However, many knowledge gaps regarding the use of environmental surveillance for Salmonella Typhi remain, particularly where human wastewater is unmanaged and its disposal reliant on informal drainage channels and natural river systems. Therefore, we conducted a study in Malawi, Blantyre to ascertain the feasibility of environmental surveillance throughout an urban, natural freshwater river system. We measured S. Typhi prevalence in wastewater contaminated rivers and ditches serving a mixed land use environment with diverse population densities. Whilst detection rates of S. Typhi were relatively low, and no obvious spatial pattern of distribution was observed, this study demonstrates that the presence of S. Typhi throughout the year. It suggests that wastewater testing for S. Typhi may offer a sensitive surveillance tool that complements clinical case reporting and may help identify areas to be prioritized for vaccination rollout. [ABSTRACT FROM AUTHOR]
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- 2024
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39. Setting priorities for patient-centered surveillance of drug-resistant infections
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Ashley, Elizabeth A., McLean, Alistair, Chiara, Francesca, Feasey, Nicholas, Jaoko, Walter, Opintan, Japheth A., Peacock, Sharon J., Rupali, Priscilla, and Turner, Paul
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- 2020
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40. Mycobacterium tuberculosis bloodstream infection prevalence, diagnosis, and mortality risk in seriously ill adults with HIV: a systematic review and meta-analysis of individual patient data
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Barr, David A, Lewis, Joseph M, Feasey, Nicholas, Schutz, Charlotte, Kerkhoff, Andrew D, Jacob, Shevin T, Andrews, Ben, Kelly, Paul, Lakhi, Shabir, Muchemwa, Levy, Bacha, Helio A, Hadad, David J, Bedell, Richard, van Lettow, Monique, Zachariah, Rony, Crump, John A, Alland, David, Corbett, Elizabeth L, Gopinath, Krishnamoorthy, Singh, Sarman, Griesel, Rulan, Maartens, Gary, Mendelson, Marc, Ward, Amy M, Parry, Christopher M, Talbot, Elizabeth A, Munseri, Patricia, Dorman, Susan E, Martinson, Neil, Shah, Maunank, Cain, Kevin, Heilig, Charles M, Varma, Jay K, von Gottberg, Anne, Sacks, Leonard, Wilson, Douglas, Squire, S Bertel, Lalloo, David G, Davies, Gerry, and Meintjes, Graeme
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- 2020
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41. “Arming half-baked people with weapons!” Information enclaving among professionals and the need for a care-centred model for antibiotic use information in Uganda, Tanzania and Malawi
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Nayiga, Susan, primary, MacPherson, Eleanor E, additional, Mankhomwa, John, additional, Nasuwa, Fortunata, additional, Pongolani, Raymond, additional, Kabuleta, Rita, additional, Kesby, Mike, additional, Dacombe, Russell, additional, Hilton, Shona, additional, Grace, Delia, additional, Feasey, Nicholas, additional, and Chandler, Clare I.R., additional
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- 2024
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42. The Impact of the COVID-19 Pandemic on Antimicrobial Usage: An International Patient-Level Cohort Study
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Farzana, Refath, primary, Harbarth, Stephan Jürgen, additional, Yu, Ly-Mee, additional, Carretto, Edoardo, additional, Moore, Catrin E., additional, Feasey, Nicholas Alexander, additional, Gales, Ana C., additional, Galal, Ushma, additional, Ergonul, Onder, additional, Yong, Dongeun, additional, Yusuf, Md Abdullah, additional, Veeraraghavan, Balaji, additional, Iregbu, Kenneth C., additional, van Santen, James, additional, da Silva Ribeiro, Aghata Cardoso, additional, Fankhauser, Carolina Maria, additional, Chilupsya, Chisomo Judith, additional, Dolecek, Christiane, additional, Ferreira, Diogo Boldim, additional, Jang, Jaehyeok, additional, Pınarlık, Fatihan, additional, Gücer, Lal Sude, additional, Cavazzuti, Laura, additional, Sultana, Marufa, additional, Haque, Md. Nazmul, additional, Haddad, Murielle Galas, additional, Medugu, Nubwa, additional, Nwajiobi-Princewill, Philip I., additional, Marrollo, Roberta, additional, Zhao, Rui, additional, Baskaran, Vivekanandan B., additional, Group, anon, additional, and Walsh, Timothy Rutland, additional
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- 2024
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43. Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa
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Pulford, Caisey V., Perez-Sepulveda, Blanca M., Canals, Rocío, Bevington, Jessica A., Bengtsson, Rebecca J., Wenner, Nicolas, Rodwell, Ella V., Kumwenda, Benjamin, Zhu, Xiaojun, Bennett, Rebecca J., Stenhouse, George E., Malaka De Silva, P., Webster, Hermione J., Bengoechea, Jose A., Dumigan, Amy, Tran-Dien, Alicia, Prakash, Reenesh, Banda, Happy C., Alufandika, Lovemore, Mautanga, Mike P., Bowers-Barnard, Arthur, Beliavskaia, Alexandra Y., Predeus, Alexander V., Rowe, Will P. M., Darby, Alistair C., Hall, Neil, Weill, François-Xavier, Gordon, Melita A., Feasey, Nicholas A., Baker, Kate S., and Hinton, Jay C. D.
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- 2021
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44. Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings
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Feasey, Nicholas A, Hadfield, James, Keddy, Karen H, Dallman, Timothy J, Jacobs, Jan, Deng, Xiangyu, Wigley, Paul, Barquist, Lars, Langridge, Gemma C, Feltwell, Theresa, Harris, Simon R, Mather, Alison E, Fookes, Maria, Aslett, Martin, Msefula, Chisomo, Kariuki, Samuel, Maclennan, Calman A, Onsare, Robert S, Weill, François-Xavier, Le Hello, Simon, Smith, Anthony M, McClelland, Michael, Desai, Prerak, Parry, Christopher M, Cheesbrough, John, French, Neil, Campos, Josefina, Chabalgoity, Jose A, Betancor, Laura, Hopkins, Katie L, Nair, Satheesh, Humphrey, Tom J, Lunguya, Octavie, Cogan, Tristan A, Tapia, Milagritos D, Sow, Samba O, Tennant, Sharon M, Bornstein, Kristin, Levine, Myron M, Lacharme-Lora, Lizeth, Everett, Dean B, Kingsley, Robert A, Parkhill, Julian, Heyderman, Robert S, Dougan, Gordon, Gordon, Melita A, and Thomson, Nicholas R
- Subjects
Microbiology ,Biological Sciences ,Foodborne Illness ,Emerging Infectious Diseases ,Rare Diseases ,Prevention ,Digestive Diseases ,Vaccine Related ,Good Health and Well Being ,Adaptation ,Biological ,Africa South of the Sahara ,Animals ,Chickens ,Enterocolitis ,Epidemics ,Female ,Genome ,Bacterial ,Humans ,Income ,Plasmids ,Poultry Diseases ,Salmonella Infections ,Salmonella enteritidis ,Sequence Analysis ,DNA ,Medical and Health Sciences ,Developmental Biology ,Agricultural biotechnology ,Bioinformatics and computational biology ,Genetics - Abstract
An epidemiological paradox surrounds Salmonella enterica serovar Enteritidis. In high-income settings, it has been responsible for an epidemic of poultry-associated, self-limiting enterocolitis, whereas in sub-Saharan Africa it is a major cause of invasive nontyphoidal Salmonella disease, associated with high case fatality. By whole-genome sequence analysis of 675 isolates of S. Enteritidis from 45 countries, we show the existence of a global epidemic clade and two new clades of S. Enteritidis that are geographically restricted to distinct regions of Africa. The African isolates display genomic degradation, a novel prophage repertoire, and an expanded multidrug resistance plasmid. S. Enteritidis is a further example of a Salmonella serotype that displays niche plasticity, with distinct clades that enable it to become a prominent cause of gastroenteritis in association with the industrial production of eggs and of multidrug-resistant, bloodstream-invasive infection in Africa.
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- 2016
45. An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes
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Perez-Sepulveda, Blanca M., Heavens, Darren, Pulford, Caisey V., Predeus, Alexander V., Low, Ross, Webster, Hermione, Dykes, Gregory F., Schudoma, Christian, Rowe, Will, Lipscombe, James, Watkins, Chris, Kumwenda, Benjamin, Shearer, Neil, Costigan, Karl, Baker, Kate S., Feasey, Nicholas A., Hinton, Jay C. D., and Hall, Neil
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- 2021
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46. Virulence factors and antimicrobial resistance of uropathogenic Escherichia coli (UPEC) isolated from urinary tract infections: a systematic review and meta-analysis
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Bunduki, Gabriel Kambale, Heinz, Eva, Phiri, Vincent Samuel, Noah, Patrick, Feasey, Nicholas, and Musaya, Janelisa
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- 2021
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47. Salmonella carriage by geckos detected within households in Malawi
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Wilson, Catherine N., Musicha, Patrick, Beale, Mathew A., Diness, Yohane, Kanjerwa, Oscar, Salifu, Chifundo, Katuah, Zefaniah, Duncan, Patricia, Nyangu, John, Mungu, Andrew, Deleza, Muonaouza, Banda, Lawrence, Makhaza, Lumbani, Elviss, Nicola, Jewell, Christopher P., Pinchbeck, Gina, Thomson, Nicholas R., Feasey, Nicholas A., and Fèvre, Eric M.
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- 2024
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48. Improving the estimation of the global burden of antimicrobial resistant infections
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Limmathurotsakul, Direk, Dunachie, Susanna, Fukuda, Keiji, Feasey, Nicholas A, Okeke, Iruka N, Holmes, Alison H, Moore, Catrin E, Dolecek, Christiane, van Doorn, H Rogier, Shetty, Nandini, Lopez, Alan D, and Peacock, Sharon J
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- 2019
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49. Environmental Surveillance for Salmonella Typhi and its Association With Typhoid Fever Incidence in India and Malawi.
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Uzzell, Christopher B, Abraham, Dilip, Rigby, Jonathan, Troman, Catherine M, Nair, Satheesh, Elviss, Nicola, Kathiresan, Lalithambigai, Srinivasan, Rajan, Balaji, Veeraraghavan, Zhou, Nicolette A, Meschke, John Scott, John, Jacob, Kang, Gagandeep, Feasey, Nicholas, Mohan, Venkata Raghava, and Grassly, Nicholas C
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SALMONELLA typhi ,TYPHOID fever ,FECAL contamination ,PUBLIC utilities ,GENE targeting ,PUBLIC health - Abstract
Background Environmental surveillance (ES) for Salmonella Typhi potentially offers a low-cost tool to identify communities with a high burden of typhoid fever. Methods We developed standardized protocols for typhoid ES, including sampling site selection, validation, characterization; grab or trap sample collection, concentration; and quantitative PCR targeting Salmonella genes (ttr , staG, and tviB) and a marker of human fecal contamination (HF183). ES was implemented over 12 months in a historically high typhoid fever incidence setting (Vellore, India) and a lower incidence setting (Blantyre, Malawi) during 2021–2022. Results S. Typhi prevalence in ES samples was higher in Vellore compared with Blantyre; 39/520 (7.5%; 95% confidence interval [CI], 4.4%–12.4%) vs 11/533 (2.1%; 95% CI, 1.1%–4.0%) in grab and 79/517 (15.3%; 95% CI, 9.8%–23.0%) vs 23/594 (3.9%; 95% CI, 1.9%–7.9%) in trap samples. Detection was clustered by ES site and correlated with site catchment population in Vellore but not Blantyre. Incidence of culture-confirmed typhoid in local hospitals was low during the study and zero some months in Vellore despite S. Typhi detection in ES. Conclusions ES describes the prevalence and distribution of S. Typhi even in the absence of typhoid cases and could inform vaccine introduction. Expanded implementation and comparison with clinical and serological surveillance will further establish its public health utility. [ABSTRACT FROM AUTHOR]
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- 2024
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50. Quantifying Travel Time, Mapping and Validating Health Facility Catchment Areas in Blantyre, Malawi
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Kalonde, Patrick, primary, Tsoka, Owen, additional, Chiepa, Blessings, additional, Baluwa, Chifuniro, additional, Nkolokosa, Clinton, additional, Mategula, Donnie, additional, Muthukrishnan, Suresh, additional, Feasey, Nicholas, additional, Henrion, Marc, additional, Stanton, Michelle, additional, Ray, Nicolas, additional, Terlouw, Dianne, additional, Longbottom, Joshua, additional, and Chirombo, James, additional
- Published
- 2023
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