98,351 results on '"Fay, A."'
Search Results
2. Visions in Quantum Gravity
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Buoninfante, Luca, Knorr, Benjamin, Kumar, K. Sravan, Platania, Alessia, Anselmi, Damiano, Basile, Ivano, Bjerrum-Bohr, N. Emil J., Brandenberger, Robert, González, Mariana Carrillo, Davis, Anne-Christine, Dittrich, Bianca, Di Vecchia, Paolo, Donoghue, John F., Dowker, Fay, Dvali, Gia, Eichhorn, Astrid, Giddings, Steven B., Gnecchi, Alessandra, Gubitosi, Giulia, Heisenberg, Lavinia, Kallosh, Renata, Koshelev, Alexey S., Liberati, Stefano, Modesto, Leonardo, Moniz, Paulo, Oriti, Daniele, Papadoulaki, Olga, Pawlowski, Jan M., Percacci, Roberto, Rachwał, Lesław, Sakellariadou, Mairi, Salvio, Alberto, Stelle, Kellogg, Surya, Sumati, Tseytlin, Arkady, Turok, Neil, Van Riet, Thomas, and Woodard, Richard P.
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High Energy Physics - Theory ,Astrophysics - Cosmology and Nongalactic Astrophysics ,General Relativity and Quantum Cosmology ,High Energy Physics - Phenomenology ,Quantum Physics - Abstract
To deepen our understanding of Quantum Gravity and its connections with black holes and cosmology, building a common language and exchanging ideas across different approaches is crucial. The Nordita Program "Quantum Gravity: from gravitational effective field theories to ultraviolet complete approaches" created a platform for extensive discussions, aimed at pinpointing both common grounds and sources of disagreements, with the hope of generating ideas and driving progress in the field. This contribution summarizes the twelve topical discussions held during the program and collects individual thoughts of speakers and panelists on the future of the field in light of these discussions., Comment: Collection of summaries of twelve topical panel discussions and individual thoughts of speakers and panelists, Nordita Scientific Program "Quantum Gravity: from gravitational EFTs to UV complete approaches". 62 pages + references, no figures
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- 2024
3. Real-space chirality from crystalline topological defects in the Kitaev spin liquid
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Borhani, Fay, Seth, Arnab, and Kimchi, Itamar
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Condensed Matter - Strongly Correlated Electrons ,Condensed Matter - Disordered Systems and Neural Networks - Abstract
We show that certain crystalline topological defects in the gapless Kitaev honeycomb spin liquid model generate a chirality that depends in a universal manner on their emergent flux. Focusing on 5-7 dislocations as building blocks, consisting of pentagon and heptagon disclinations, we identify the Kitaev bond label configurations that preserve solvability. By defining and computing multiple formulations of local Chern markers we find that the 5 and 7 lattice defects host a contribution to real-space chirality, which we dub "Chern charge" or $\mathcal{Q_M}$. The sign of this local Chern charge obeys $\text{sgn}({\mathcal{Q_M}}) = - i ~ \text{sgn}(F) W$ where $F$ is the disclination Frank angle and $W = \pm i$ is its emergent-gauge-field flux. We show that lattice curvature and torsion can interplay with the surrounding gapless background to modify the $\mathcal{Q_M}$ profile and magnitude, but that the sign of $\mathcal{Q_M}$ is set by local properties of the defect, enabling the identification of Chern charges., Comment: 8 pages, 4 figures
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- 2024
4. Nutzung von Massespeichern zur Flexibilisierung des Energieverbrauchs: Kosteneffizienter Anlagenbetrieb durch Anpassung an Marktpreise
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Wagner, Lukas Peter, Reinpold, Lasse Matthias, Kilthau, Maximilian, Gehlhoff, Felix, Derksen, Christian, Loose, Nils, Jepsen, Julian, and Fay, Alexander
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Electrical Engineering and Systems Science - Systems and Control - Abstract
The increasing share of renewable energy sources and necessitate new concepts for energy flexible operation of industrial production resources. In this paper, we demonstrate the potential of mass storage to increase energy flexibility in industrial operations through the application of optimized operational planning based on market prices. A wastewater treatment plant equipped with decanters and storages is examined to optimally utilize its energy-flexibility. An MILP model was created for energy-flexible production facilities. The resulting operation plan was transmitted to the plant operators and executed over a period of more than 24 hours. The model shows good agreement with real measurements (average errors between 3% to 7%). The results demonstrate significant potential for cost savings of roughly 56% for the investigated time horizon. -- Der zunehmende Anteil erneuerbarer Energien erfordert neue Konzepte zur energieflexiblen Steuerung industrieller Produktionsanlagen. In diesem Beitrag wird demonstriert, wie das Potenzial von Massespeichern zur Steigerung der Energieflexibilit\"at in industriellen Prozessen durch die Anwendung optimierter Betriebsplanung basierend auf Marktpreisen, genutzt werden kann. Es wird eine Abwasseraufbereitungsanlage mit Dekantern und zugeh\"origen Massespeichersystemen betrachtet, um deren Energieflexibilit\"at optimiert zu nutzen. Der resultierende Betriebsplan wurde in einem Assistenzsystem an die Anlagenbetreiber \"ubermittelt und \"uber einen Zeitraum von \"uber 24 Stunden ausgef\"uhrt. Das Modell zeigt eine gute \"Ubereinstimmung mit den realen Messwerten (Fehlern zwischen 3% und 7%). Alle von den Betreibern gesetzten Betriebsziele wurden erreicht, was die Anwendbarkeit des Modells in industriellen Umgebungen best\"atigt. Die Ergebnisse zeigen ein erhebliches Einsparpotenzial von etwa 56% f\"ur den untersuchten Zeitraum., Comment: accepted for publication with atp magazine. German language
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- 2024
5. Locally Differentially Private Online Federated Learning With Correlated Noise
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Zhang, Jiaojiao, Zhu, Linglingzhi, Fay, Dominik, and Johansson, Mikael
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Computer Science - Machine Learning ,Computer Science - Distributed, Parallel, and Cluster Computing ,Statistics - Machine Learning - Abstract
We introduce a locally differentially private (LDP) algorithm for online federated learning that employs temporally correlated noise to improve utility while preserving privacy. To address challenges posed by the correlated noise and local updates with streaming non-IID data, we develop a perturbed iterate analysis that controls the impact of the noise on the utility. Moreover, we demonstrate how the drift errors from local updates can be effectively managed for several classes of nonconvex loss functions. Subject to an $(\epsilon,\delta)$-LDP budget, we establish a dynamic regret bound that quantifies the impact of key parameters and the intensity of changes in the dynamic environment on the learning performance. Numerical experiments confirm the efficacy of the proposed algorithm., Comment: arXiv admin note: text overlap with arXiv:2403.16542
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- 2024
6. A 2x2 quantum dot array in silicon with fully tuneable pairwise interdot coupling
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Lim, Wee Han, Tanttu, Tuomo, Youn, Tony, Huang, Jonathan Yue, Serrano, Santiago, Dickie, Alexandra, Yianni, Steve, Hudson, Fay E., Escott, Christopher C., Yang, Chih Hwan, Laucht, Arne, Saraiva, Andre, Chan, Kok Wai, Cifuentes, Jesús D., and Dzurak, Andrew S.
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Condensed Matter - Mesoscale and Nanoscale Physics ,Quantum Physics - Abstract
Recent advances in semiconductor spin qubits have achieved linear arrays exceeding ten qubits. Moving to two-dimensional (2D) qubit arrays is a critical next step to advance towards fault-tolerant implementations, but it poses substantial fabrication challenges, particularly because enabling control of nearest-neighbor entanglement requires the incorporation of interstitial exchange gates between quantum dots in the qubit architecture. In this work, we present a 2D array of silicon metal-oxide-semiconductor (MOS) quantum dots with tunable interdot coupling between all adjacent dots. The device is characterized at 4.2 K, where we demonstrate the formation and isolation of double-dot and triple-dot configurations. We show control of all nearest-neighbor tunnel couplings spanning up to 30 decades per volt through the interstitial exchange gates and use advanced modeling tools to estimate the exchange interactions that could be realized among qubits in this architecture. These results represent a significant step towards the development of 2D MOS quantum processors compatible with foundry manufacturing techniques., Comment: 9 pages, 5 figures
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- 2024
7. Exploring LLMs for Verifying Technical System Specifications Against Requirements
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Reinpold, Lasse M., Schieseck, Marvin, Wagner, Lukas P., Gehlhoff, Felix, and Fay, Alexander
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Computer Science - Software Engineering ,Electrical Engineering and Systems Science - Systems and Control - Abstract
Requirements engineering is a knowledge intensive process and crucial for the success of engineering projects. The field of knowledge-based requirements engineering (KBRE) aims to support engineers by providing knowledge to assist in the elicitation, validation, and management of system requirements. The advent of large language models (LLMs) opens new opportunities in the field of KBRE. This work experimentally investigates the potential of LLMs in requirements verification. Therein, LLMs are provided with a set of requirements and a textual system specification and are prompted to assess which requirements are fulfilled by the system specification. Different experimental variables such as system specification complexity, the number of requirements, and prompting strategies were analyzed. Formal rule-based systems serve as a benchmark to compare LLM performance to. Requirements and system specifications are derived from the smart-grid domain. Results show that advanced LLMs, like GPT-4o and Claude 3.5 Sonnet, achieved f1-scores between 79 % and 94 % in identifying non-fulfilled requirements, indicating potential for LLMs to be leveraged for requirements verification., Comment: Submitted to 3rd IEEE Industrial Electronics Society Annual Online Conference (ONCON)
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- 2024
8. ViTally Consistent: Scaling Biological Representation Learning for Cell Microscopy
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Kenyon-Dean, Kian, Wang, Zitong Jerry, Urbanik, John, Donhauser, Konstantin, Hartford, Jason, Saberian, Saber, Sahin, Nil, Bendidi, Ihab, Celik, Safiye, Fay, Marta, Vera, Juan Sebastian Rodriguez, Haque, Imran S, and Kraus, Oren
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Computer Vision and Pattern Recognition ,68T07 ,I.2 ,I.4 - Abstract
Large-scale cell microscopy screens are used in drug discovery and molecular biology research to study the effects of millions of chemical and genetic perturbations on cells. To use these images in downstream analysis, we need models that can map each image into a feature space that represents diverse biological phenotypes consistently, in the sense that perturbations with similar biological effects have similar representations. In this work, we present the largest foundation model for cell microscopy data to date, a new 1.9 billion-parameter ViT-G/8 MAE trained on over 8 billion microscopy image crops. Compared to a previous published ViT-L/8 MAE, our new model achieves a 60% improvement in linear separability of genetic perturbations and obtains the best overall performance on whole-genome biological relationship recall and replicate consistency benchmarks. Beyond scaling, we developed two key methods that improve performance: (1) training on a curated and diverse dataset; and, (2) using biologically motivated linear probing tasks to search across each transformer block for the best candidate representation of whole-genome screens. We find that many self-supervised vision transformers, pretrained on either natural or microscopy images, yield significantly more biologically meaningful representations of microscopy images in their intermediate blocks than in their typically used final blocks. More broadly, our approach and results provide insights toward a general strategy for successfully building foundation models for large-scale biological data., Comment: NeurIPS 2024 Foundation Models for Science Workshop (38th Conference on Neural Information Processing Systems). 18 pages, 7 figures
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- 2024
9. Is bouncing easier with a negative effective dark fluid density ?
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Fay, Stéphane
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General Relativity and Quantum Cosmology ,Astrophysics - Cosmology and Nongalactic Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena - Abstract
Assuming that a cosmological model can describe the whole Universe history, we look for the conditions of a cosmological bounce thus in agreement with late time observations. Our approach involves casting such a theory into General Relativity with curvature ($\Omega_{\kappa}$), matter ($\Omega_{m}$), radiation ($\Omega_{r}$) and an effective dark fluid ($\Omega_{d}$) and formulating the corresponding field equations as a 2D dynamical system, wherein phase space points corresponding to extrema of the metric function are constrained by observational data. We show that if this effective dark fluid density is positive at the bounce, these observational constraints imply its occurrence in the future at a redshift $z<-0.81$ whatever the cosmological model (dark energy, brane, $f(R)$, etc.) corresponding to this effective dark fluid and even with a positive curvature. Hence, the effective dark fluid density must be negative at the bounce such as it arises for $z>-0.81$ and thus possibly in the past. Observations also impose that the dark fluid effective density can change sign only within the redshift range $0.54
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- 2024
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10. Identity and Influence -- RE Professional's Views on the Inclusion of Far-Right Extremism as a Topic within Religious Education Lessons
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Fay Lowe
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This research addresses the concerning influence of far-right extremism on pupils in England, highlighting risks leading to potential radicalisation and violent extremism. Conducted through focus groups at the national RE conference 'RExChange 2022', the study explores whether and how far-right extremism should be integrated into the Religious Education (RE) curriculum. Findings suggest that RE can play a vital role in countering extremist narratives, particularly those with antisemitic and Islamophobic elements, by fostering tolerance, respect, and critical thinking. Despite RE's potential, challenges arise due to its locally determined nature and inconsistent provision across schools. The study concludes with recommendations for including topics about far-right extremism in RE, aiming to build pupils' resilience against radicalisation and support informed decision-making.
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- 2024
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11. A 300 mm foundry silicon spin qubit unit cell exceeding 99% fidelity in all operations
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Steinacker, Paul, Stuyck, Nard Dumoulin, Lim, Wee Han, Tanttu, Tuomo, Feng, MengKe, Nickl, Andreas, Serrano, Santiago, Candido, Marco, Cifuentes, Jesus D., Hudson, Fay E., Chan, Kok Wai, Kubicek, Stefan, Jussot, Julien, Canvel, Yann, Beyne, Sofie, Shimura, Yosuke, Loo, Roger, Godfrin, Clement, Raes, Bart, Baudot, Sylvain, Wan, Danny, Laucht, Arne, Yang, Chih Hwan, Saraiva, Andre, Escott, Christopher C., De Greve, Kristiaan, and Dzurak, Andrew S.
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Condensed Matter - Mesoscale and Nanoscale Physics ,Quantum Physics - Abstract
Fabrication of quantum processors in advanced 300 mm wafer-scale complementary metal-oxide-semiconductor (CMOS) foundries provides a unique scaling pathway towards commercially viable quantum computing with potentially millions of qubits on a single chip. Here, we show precise qubit operation of a silicon two-qubit device made in a 300 mm semiconductor processing line. The key metrics including single- and two-qubit control fidelities exceed 99% and state preparation and measurement fidelity exceeds 99.9%, as evidenced by gate set tomography (GST). We report coherence and lifetimes up to $T_\mathrm{2}^{\mathrm{*}} = 30.4$ $\mu$s, $T_\mathrm{2}^{\mathrm{Hahn}} = 803$ $\mu$s, and $T_1 = 6.3$ s. Crucially, the dominant operational errors originate from residual nuclear spin carrying isotopes, solvable with further isotopic purification, rather than charge noise arising from the dielectric environment. Our results answer the longstanding question whether the favourable properties including high-fidelity operation and long coherence times can be preserved when transitioning from a tailored academic to an industrial semiconductor fabrication technology., Comment: 10 pages, 4 figures, 4 extended data figures
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- 2024
12. IoT-Based Water Quality Monitoring System in Philippine Off-Grid Communities
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Abrajano, Jenny Vi, Botangen, Khavee Agustus, Nabua, Jovith, Apanay, Jenalyn, and Peña, Chezalea Fay
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Electrical Engineering and Systems Science - Systems and Control ,C.3 ,H.4.2 - Abstract
Contaminated and polluted water poses significant threats to human health, necessitating vigilant monitoring of water sources for potential contamination. This paper introduces a low-cost Internet of Things (IoT)-based water quality monitoring system designed to address water quality challenges in rural communities, as demonstrated through a case study conducted in the Philippines. The system consists of two core components. The hardware component of the system, built on Arduino technology and featuring real-time data transmission, focuses on monitoring pH levels, turbidity, and temperature via sensors. The system is equipped to transmit data to a cloud database and send informative messages to mobile numbers, updating users on the status of water supplies. The application component acts as a user interface for accessing and managing data collected by the sensors. The successful deployment of this Water Quality Monitoring (WQM) system not only helps community leaders and health workers monitor water sources but also underscores its potential to empower communities in safeguarding their water sources, thereby contributing to the advancement of clean and safe water access., Comment: Proceedings of the 2024 9th International Conference on Business and Industrial Research, May 2024, Bangkok, Thailand
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- 2024
13. Certifying the quantumness of a nuclear spin qudit through its uniform precession
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Vaartjes, Arjen, Nurizzo, Martin, Zaw, Lin Htoo, Wilhelm, Benjamin, Yu, Xi, Holmes, Danielle, Schwienbacher, Daniel, Kringhøj, Anders, van Blankenstein, Mark R., Jakob, Alexander M., Hudson, Fay E., Itoh, Kohei M., Murray, Riley J., Blume-Kohout, Robin, Anand, Namit, Dzurak, Andrew S., Jamieson, David N., Scarani, Valerio, and Morello, Andrea
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Quantum Physics ,Condensed Matter - Mesoscale and Nanoscale Physics - Abstract
Spin precession is a textbook example of dynamics of a quantum system that exactly mimics its classical counterpart. Here we challenge this view by certifying the quantumness of exotic states of a nuclear spin through its uniform precession. The key to this result is measuring the positivity, instead of the expectation value, of the $x$-projection of the precessing spin, and using a spin > 1/2 qudit, that is not restricted to semi-classical spin coherent states. The experiment is performed on a single spin-7/2 $^{123}$Sb nucleus, implanted in a silicon nanoelectronic device, amenable to high-fidelity preparation, control, and projective single-shot readout. Using Schr\"odinger cat states and other bespoke states of the nucleus, we violate the classical bound by 19 standard deviations, proving that no classical probability distribution can explain the statistic of this spin precession, and highlighting our ability to prepare quantum resource states with high fidelity in a single atomic-scale qudit., Comment: Main text: 11 pages, 5 figures. Supplementary information: 13 pages, 11 figures
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- 2024
14. Semantic model for the description of energy data in the Module Type Package
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Reiche, Leif-Thore, Gehlhoff, Felix, and Fay, Alexander
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Electrical Engineering and Systems Science - Systems and Control - Abstract
Modular production systems that employ the Module Type Package (MTP) to describe module interfaces can, at present, only communicate energy data through proprietary solutions. Due to this limitation, users face additional effort when calculating energy KPIs for modules or determining the energy efficiency of modules. To address this issue, we present a model that facilitates energy data to be described semantically and uniformly in the MTP on the basis of an industrial standard (OPC 34100). MTPs incorporating this model can transmit semantically consistent energy data from modules to the process control system, making the data available for further applications, such as monitoring or optimization., Comment: 6 pages, 4 figures
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- 2024
15. Efficient polarizable QM/MM using the direct reaction field Hamiltonian with electrostatic potential fitted multipole operators
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Fay, Thomas P., Ferré, Nicolas, and Huix-Rotllant, Miquel
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Physics - Chemical Physics - Abstract
Electronic polarization and dispersion are decisive actors in determining interaction energies between molecules. These interactions have a particularly profound effect on excitation energies of molecules in complex environments, especially when the excitation involves a significant degree of charge reorganisation. The direct reaction field (DRF) approach, which has seen a recent revival of interest, provides a powerful framework for describing these interactions in quantum mechanics/molecular mechanics (QM/MM) models of systems, where a small subsystem of interest is described using quantum chemical methods and the remainder is treated with a simple MM force field. In this paper we show how the DRF approach can be combined with the electrostatic potential fitted (ESPF) multipole operator description of the QM region charge density, which significantly improves the efficiency of the method, particularly for large MM systems, and for typical calculations effectively eliminates the dependence on MM system size. We also show how the DRF approach can be combined with fluctuating charge descriptions of the polarizable environment, as well as previously used atom-centred dipole-polarizability based models. We further show that the ESPF-DRF method provides an accurate description of molecular interactions in both ground and excited electronic states of the QM system and apply it to predict the gas to aqueous solution solvatochromic shifts in the UV/visible absorption spectrum of acrolein., Comment: Accepted in Journal of Chemical Theory and Computation
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- 2024
16. Model-based Workflow for the Automated Generation of PDDL Descriptions
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Nabizada, Hamied, Jeleniewski, Tom, Gehlhoff, Felix, and Fay, Alexander
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Computer Science - Artificial Intelligence ,Computer Science - Software Engineering - Abstract
Manually creating Planning Domain Definition Language (PDDL) descriptions is difficult, error-prone, and requires extensive expert knowledge. However, this knowledge is already embedded in engineering models and can be reused. Therefore, this contribution presents a comprehensive workflow for the automated generation of PDDL descriptions from integrated system and product models. The proposed workflow leverages Model-Based Systems Engineering (MBSE) to organize and manage system and product information, translating it automatically into PDDL syntax for planning purposes. By connecting system and product models with planning aspects, it ensures that changes in these models are quickly reflected in updated PDDL descriptions, facilitating efficient and adaptable planning processes. The workflow is validated within a use case from aircraft assembly.
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- 2024
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17. Semantic Capability Model for the Simulation of Manufacturing Processes
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Reif, Jonathan, Jeleniewski, Tom, Köcher, Aljosha, Frerich, Tim, Gehlhoff, Felix, and Fay, Alexander
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Computer Science - Software Engineering - Abstract
Simulations offer opportunities in the examination of manufacturing processes. They represent various aspects of the production process and the associated production systems. However, often a single simulation does not suffice to provide a comprehensive understanding of specific process settings. Instead, a combination of different simulations is necessary when the outputs of one simulation serve as the input parameters for another, resulting in a sequence of simulations. Manual planning of simulation sequences is a demanding task that requires careful evaluation of factors like time, cost, and result quality to choose the best simulation scenario for a given inquiry. In this paper, an information model is introduced, which represents simulations, their capabilities to generate certain knowledge, and their respective quality criteria. The information model is designed to provide the foundation for automatically generating simulation sequences. The model is implemented as an extendable and adaptable ontology. It utilizes Ontology Design Patterns based on established industrial standards to enhance interoperability and reusability. To demonstrate the practicality of this information model, an application example is provided. This example serves to illustrate the model's capacity in a real-world context, thereby validating its utility and potential for future applications., Comment: \c{opyright} 2024 SCITEPRESS. Personal use of this material is permitted. Permission from SCITEPRESS must be obtained for all other uses, in any current or future media
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- 2024
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18. Catalytic undirected methylation of unactivated C(sp3)−H bonds suitable for complex molecules
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Tan, Jin-Fay, Kang, Yi Cheng, and Hartwig, John F
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Inorganic Chemistry ,Organic Chemistry ,Chemical Sciences ,5.1 Pharmaceuticals ,Methylation ,Catalysis ,Nickel ,Peroxides ,Drug Discovery ,Biological Products ,Ligands ,Terpenes ,Peptides ,Carbon - Abstract
In pharmaceutical discovery, the "magic methyl" effect describes a substantial improvement in the pharmacological properties of a drug candidate with the incorporation of methyl groups. Therefore, to expedite the synthesis of methylated drug analogs, late-stage, undirected methylations of C(sp3)-H bonds in complex molecules would be valuable. However, current methods for site-selective methylations are limited to activated C(sp3)-H bonds. Here we describe a site-selective, undirected methylation of unactivated C(sp3)-H bonds, enabled by photochemically activated peroxides and a nickel(II) complex whose turnover is enhanced by an ancillary ligand. The methodology displays compatibility with a wide range of functional groups and a high selectivity for tertiary C-H bonds, making it suitable for the late-stage methylation of complex organic compounds that contain multiple alkyl C-H bonds, such as terpene natural products, peptides, and active pharmaceutical ingredients. Overall, this method provides a synthetic tool to explore the "magic methyl" effect in drug discovery.
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- 2024
19. Home visits versus fixed-site care by community health workers and child survival: a cluster-randomized trial, Mali
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Liu, Jenny, Treleaven, Emily, Whidden, Caroline, Doumbia, Saibou, Kone, Naimatou, Cisse, Amadou Beydi, Diop, Aly, Berthé, Mohamed, Guindo, Mahamadou, Koné, Brahima Mamadou, Fay, Michael P, Johnson, Ari D, and Kayentao, Kassoum
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Biomedical and Clinical Sciences ,Public Health ,Health Sciences ,Health Services ,Prevention ,Clinical Trials and Supportive Activities ,Pediatric ,Behavioral and Social Science ,Clinical Research ,8.1 Organisation and delivery of services ,Good Health and Well Being ,Humans ,Mali ,House Calls ,Community Health Workers ,Female ,Infant ,Child Mortality ,Child ,Preschool ,Adolescent ,Adult ,Middle Aged ,Male ,Young Adult ,Infant ,Newborn ,Infant Mortality ,Rural Population ,Primary Health Care ,Medical and Health Sciences ,Tropical Medicine ,Biomedical and clinical sciences ,Health sciences - Abstract
ObjectiveTo test the effect of proactive home visits by trained community health workers (CHWs) on child survival.MethodsWe conducted a two arm, parallel, unmasked cluster-randomized trial in 137 village-clusters in rural Mali. From February 2017 to January 2020, 31 761 children enrolled at the trial start or at birth. Village-clusters received either primary care services by CHWs providing regular home visits (intervention) or by CHWs providing care at a fixed site (control). In both arms, user fees were removed and primary health centres received staffing and infrastructure improvements before trial start. Using lifetime birth histories from women aged 15-49 years surveyed annually, we estimated incidence rate ratios (IRR) for intention-to-treat and per-protocol effects on under-five mortality using Poisson regression models.FindingsOver three years, we observed 52 970 person-years (27 332 in intervention arm; 25 638 in control arm). During the trial, 909 children in the intervention arm and 827 children in the control arm died. The under-five mortality rate declined from 142.8 (95% CI: 133.3-152.9) to 56.7 (95% CI: 48.5-66.4) deaths per 1000 live births in the intervention arm; and from 154.3 (95% CI: 144.3-164.9) to 54.9 (95% CI: 45.2-64.5) deaths per 1000 live births in the control arm. Intention-to-treat (IRR: 1.02; 95% CI: 0.88-1.19) and per-protocol estimates (IRR: 1.01; 95% CI: 0.87-1.18) showed no difference between study arms.ConclusionThough proactive home visits did not reduce under-five mortality, system-strengthening measures may have contributed to the decline in under-five mortality in both arms.
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- 2024
20. Interdisciplinary solutions and collaborations for wildfire management.
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Johnston, Fay, Jones, Charles, Li, Fang, Stehr, Alejandra, Torres-Vázquez, Miguel, Turco, Marco, and Veraverbeke, Sander
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The Earth system has long lived with fires,1 , 2 but the impact of climate change on fire regimes has led to extreme wildfire events with higher intensity and faster spread.3 , 4 , 5 This has effects on ecosystems and resources, air pollution, and, ultimately, human societies.6 Facing these compounding challenges require interdisciplinary solutions and collaborations. In this Backstory, we bring together fire researchers across fields, aiming to foster discussions and collaborations across disciplines, for us to better understand how we can learn to live with fire.
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- 2024
21. Relevance of genetic testing in the gene-targeted trial era: the Rostock Parkinsons disease study.
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Westenberger, Ana, Skrahina, Volha, Usnich, Tatiana, Beetz, Christian, Vollstedt, Eva-Juliane, Laabs, Björn-Hergen, Paul, Jefri, Curado, Filipa, Skobalj, Snezana, Gaber, Hanaa, Olmedillas, Maria, Bogdanovic, Xenia, Ameziane, Najim, Schell, Nathalie, Aasly, Jan, Afshari, Mitra, Agarwal, Pinky, Aldred, Jason, Alonso-Frech, Fernando, Anderson, Roderick, Araújo, Rui, Arkadir, David, Avenali, Micol, Balal, Mehmet, Benizri, Sandra, Bette, Sagari, Bhatia, Perminder, Bonello, Michael, Braga-Neto, Pedro, Brauneis, Sarah, Cardoso, Francisco, Cavallieri, Francesco, Classen, Joseph, Cohen, Lisa, Coletta, Della, Crosiers, David, Cullufi, Paskal, Dashtipour, Khashayar, Demirkiran, Meltem, de Carvalho Aguiar, Patricia, De Rosa, Anna, Djaldetti, Ruth, Dogu, Okan, Dos Santos Ghilardi, Maria, Eggers, Carsten, Elibol, Bulent, Ellenbogen, Aaron, Ertan, Sibel, Fabiani, Giorgio, Falkenburger, Björn, Farrow, Simon, Fay-Karmon, Tsviya, Ferencz, Gerald, Fonoff, Erich, Fragoso, Yara, Genç, Gençer, Gorospe, Arantza, Grandas, Francisco, Gruber, Doreen, Gudesblatt, Mark, Gurevich, Tanya, Hagenah, Johann, Hanagasi, Hasmet, Hassin-Baer, Sharon, Hauser, Robert, Hernández-Vara, Jorge, Herting, Birgit, Hinson, Vanessa, Hogg, Elliot, Hu, Michele, Hummelgen, Eduardo, Hussey, Kelly, Infante, Jon, Isaacson, Stuart, Jauma, Serge, Koleva-Alazeh, Natalia, Kuhlenbäumer, Gregor, Kühn, Andrea, Litvan, Irene, López-Manzanares, Lydia, Luxmore, McKenzie, Manandhar, Sujeena, Marcaud, Veronique, Markopoulou, Katerina, Marras, Connie, McKenzie, Mark, Matarazzo, Michele, Merello, Marcelo, Mollenhauer, Brit, Morgan, John, Mullin, Stephen, Musacchio, Thomas, Myers, Bennett, Negrotti, Anna, Nieves, Anette, Nitsan, Zeev, Oskooilar, Nader, Öztop-Çakmak, Özgür, Pal, Gian, and Pavese, Nicola
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GBA1 ,LRRK2 ,Parkinson’s disease ,genetic factors ,genetic testing ,next-generation sequencing ,Humans ,Parkinson Disease ,Male ,Female ,Middle Aged ,Aged ,Genetic Testing ,Leucine-Rich Repeat Serine-Threonine Protein Kinase-2 ,Glucosylceramidase ,alpha-Synuclein ,Genetic Predisposition to Disease ,Ubiquitin-Protein Ligases ,Cohort Studies ,Protein Kinases ,Mutation ,Adult - Abstract
Estimates of the spectrum and frequency of pathogenic variants in Parkinsons disease (PD) in different populations are currently limited and biased. Furthermore, although therapeutic modification of several genetic targets has reached the clinical trial stage, a major obstacle in conducting these trials is that PD patients are largely unaware of their genetic status and, therefore, cannot be recruited. Expanding the number of investigated PD-related genes and including genes related to disorders with overlapping clinical features in large, well-phenotyped PD patient groups is a prerequisite for capturing the full variant spectrum underlying PD and for stratifying and prioritizing patients for gene-targeted clinical trials. The Rostock Parkinsons disease (ROPAD) study is an observational clinical study aiming to determine the frequency and spectrum of genetic variants contributing to PD in a large international cohort. We investigated variants in 50 genes with either an established relevance for PD or possible phenotypic overlap in a group of 12 580 PD patients from 16 countries [62.3% male; 92.0% White; 27.0% positive family history (FH+), median age at onset (AAO) 59 years] using a next-generation sequencing panel. Altogether, in 1864 (14.8%) ROPAD participants (58.1% male; 91.0% White, 35.5% FH+, median AAO 55 years), a PD-relevant genetic test (PDGT) was positive based on GBA1 risk variants (10.4%) or pathogenic/likely pathogenic variants in LRRK2 (2.9%), PRKN (0.9%), SNCA (0.2%) or PINK1 (0.1%) or a combination of two genetic findings in two genes (∼0.2%). Of note, the adjusted positive PDGT fraction, i.e. the fraction of positive PDGTs per country weighted by the fraction of the population of the world that they represent, was 14.5%. Positive PDGTs were identified in 19.9% of patients with an AAO ≤ 50 years, in 19.5% of patients with FH+ and in 26.9% with an AAO ≤ 50 years and FH+. In comparison to the idiopathic PD group (6846 patients with benign variants), the positive PDGT group had a significantly lower AAO (4 years, P = 9 × 10-34). The probability of a positive PDGT decreased by 3% with every additional AAO year (P = 1 × 10-35). Female patients were 22% more likely to have a positive PDGT (P = 3 × 10-4), and for individuals with FH+ this likelihood was 55% higher (P = 1 × 10-14). About 0.8% of the ROPAD participants had positive genetic testing findings in parkinsonism-, dystonia/dyskinesia- or dementia-related genes. In the emerging era of gene-targeted PD clinical trials, our finding that ∼15% of patients harbour potentially actionable genetic variants offers an important prospect to affected individuals and their families and underlines the need for genetic testing in PD patients. Thus, the insights from the ROPAD study allow for data-driven, differential genetic counselling across the spectrum of different AAOs and family histories and promote a possible policy change in the application of genetic testing as a routine part of patient evaluation and care in PD.
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- 2024
22. Benchmarking Dependence Measures to Prevent Shortcut Learning in Medical Imaging
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Müller, Sarah, Fay, Louisa, Koch, Lisa M., Gatidis, Sergios, Küstner, Thomas, and Berens, Philipp
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Machine Learning - Abstract
Medical imaging cohorts are often confounded by factors such as acquisition devices, hospital sites, patient backgrounds, and many more. As a result, deep learning models tend to learn spurious correlations instead of causally related features, limiting their generalizability to new and unseen data. This problem can be addressed by minimizing dependence measures between intermediate representations of task-related and non-task-related variables. These measures include mutual information, distance correlation, and the performance of adversarial classifiers. Here, we benchmark such dependence measures for the task of preventing shortcut learning. We study a simplified setting using Morpho-MNIST and a medical imaging task with CheXpert chest radiographs. Our results provide insights into how to mitigate confounding factors in medical imaging., Comment: Accepted to the 15th International Workshop on Machine Learning in Medical Imaging (MLMI 2024); new version: appendix moved to the end, after the references
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- 2024
23. Chatbot-Based Ontology Interaction Using Large Language Models and Domain-Specific Standards
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Reif, Jonathan, Jeleniewski, Tom, Gill, Milapji Singh, Gehlhoff, Felix, and Fay, Alexander
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Computer Science - Information Retrieval ,Computer Science - Artificial Intelligence - Abstract
The following contribution introduces a concept that employs Large Language Models (LLMs) and a chatbot interface to enhance SPARQL query generation for ontologies, thereby facilitating intuitive access to formalized knowledge. Utilizing natural language inputs, the system converts user inquiries into accurate SPARQL queries that strictly query the factual content of the ontology, effectively preventing misinformation or fabrication by the LLM. To enhance the quality and precision of outcomes, additional textual information from established domain-specific standards is integrated into the ontology for precise descriptions of its concepts and relationships. An experimental study assesses the accuracy of generated SPARQL queries, revealing significant benefits of using LLMs for querying ontologies and highlighting areas for future research., Comment: \c{opyright} 2024 IEEE. Personal use of this material is permitted. Permission from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertising or promotional purposes, creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works
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- 2024
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24. Violating Bell's inequality in gate-defined quantum dots
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Steinacker, Paul, Tanttu, Tuomo, Lim, Wee Han, Stuyck, Nard Dumoulin, Feng, MengKe, Serrano, Santiago, Vahapoglu, Ensar, Su, Rocky Y., Huang, Jonathan Y., Jones, Cameron, Itoh, Kohei M., Hudson, Fay E., Escott, Christopher C., Morello, Andrea, Saraiva, Andre, Yang, Chih Hwan, Dzurak, Andrew S., and Laucht, Arne
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Condensed Matter - Mesoscale and Nanoscale Physics ,Quantum Physics ,81P68, 81-05 - Abstract
Superior computational power promised by quantum computers utilises the fundamental quantum mechanical principle of entanglement. However, achieving entanglement and verifying that the generated state does not follow the principle of local causality has proven difficult for spin qubits in gate-defined quantum dots, as it requires simultaneously high concurrence values and readout fidelities to break the classical bound imposed by Bell's inequality. Here we employ heralded initialization and calibration via gate set tomography (GST), to reduce all relevant errors and push the fidelities of the full 2-qubit gate set above 99 %, including state preparation and measurement (SPAM). We demonstrate a 97.17 % Bell state fidelity without correcting for readout errors and violate Bell's inequality with a Bell signal of S = 2.731 close to the theoretical maximum of $2\sqrt{2}$. Our measurements exceed the classical limit even at elevated temperatures of 1.1 K or entanglement lifetimes of 100 $\mu s$., Comment: 19 pages, 5 main figures, 9 extended data figures
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- 2024
25. Spin Qubits with Scalable milli-kelvin CMOS Control
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Bartee, Samuel K., Gilbert, Will, Zuo, Kun, Das, Kushal, Tanttu, Tuomo, Yang, Chih Hwan, Stuyck, Nard Dumoulin, Pauka, Sebastian J., Su, Rocky Y., Lim, Wee Han, Serrano, Santiago, Escott, Christopher C., Hudson, Fay E., Itoh, Kohei M., Laucht, Arne, Dzurak, Andrew S., and Reilly, David J.
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Quantum Physics ,Condensed Matter - Mesoscale and Nanoscale Physics - Abstract
A key virtue of spin qubits is their sub-micron footprint, enabling a single silicon chip to host the millions of qubits required to execute useful quantum algorithms with error correction. With each physical qubit needing multiple control lines however, a fundamental barrier to scale is the extreme density of connections that bridge quantum devices to their external control and readout hardware. A promising solution is to co-locate the control system proximal to the qubit platform at milli-kelvin temperatures, wired-up via miniaturized interconnects. Even so, heat and crosstalk from closely integrated control have potential to degrade qubit performance, particularly for two-qubit entangling gates based on exchange coupling that are sensitive to electrical noise. Here, we benchmark silicon MOS-style electron spin qubits controlled via heterogeneously-integrated cryo-CMOS circuits with a low enough power density to enable scale-up. Demonstrating that cryo-CMOS can efficiently enable universal logic operations for spin qubits, we go on to show that mill-kelvin control has little impact on the performance of single- and two-qubit gates. Given the complexity of our milli-kelvin CMOS platform, with some 100-thousand transistors, these results open the prospect of scalable control based on the tight packaging of spin qubits with a chiplet style control architecture.
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- 2024
26. Integrating Ontology Design with the CRISP-DM in the context of Cyber-Physical Systems Maintenance
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Gill, Milapji Singh, Westermann, Tom, Steindl, Gernot, Gehlhoff, Felix, and Fay, Alexander
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Computer Science - Artificial Intelligence - Abstract
In the following contribution, a method is introduced that integrates domain expert-centric ontology design with the Cross-Industry Standard Process for Data Mining (CRISP-DM). This approach aims to efficiently build an application-specific ontology tailored to the corrective maintenance of Cyber-Physical Systems (CPS). The proposed method is divided into three phases. In phase one, ontology requirements are systematically specified, defining the relevant knowledge scope. Accordingly, CPS life cycle data is contextualized in phase two using domain-specific ontological artifacts. This formalized domain knowledge is then utilized in the CRISP-DM to efficiently extract new insights from the data. Finally, the newly developed data-driven model is employed to populate and expand the ontology. Thus, information extracted from this model is semantically annotated and aligned with the existing ontology in phase three. The applicability of this method has been evaluated in an anomaly detection case study for a modular process plant.
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- 2024
27. A Formal Model for Artificial Intelligence Applications in Automation Systems
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Schieseck, Marvin, Topalis, Philip, Reinpold, Lasse, Gehlhoff, Felix, and Fay, Alexander
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Electrical Engineering and Systems Science - Systems and Control ,Computer Science - Artificial Intelligence - Abstract
The integration of Artificial Intelligence (AI) into automation systems has the potential to enhance efficiency and to address currently unsolved existing technical challenges. However, the industry-wide adoption of AI is hindered by the lack of standardized documentation for the complex compositions of automation systems, AI software, production hardware, and their interdependencies. This paper proposes a formal model using standards and ontologies to provide clear and structured documentation of AI applications in automation systems. The proposed information model for artificial intelligence in automation systems (AIAS) utilizes ontology design patterns to map and link various aspects of automation systems and AI software. Validated through a practical example, the model demonstrates its effectiveness in improving documentation practices and aiding the sustainable implementation of AI in industrial settings.
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- 2024
28. Pr\'avention und Beseitigung von Fehlerursachen im Kontext von unbemannten Fahrzeugen
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Schnakenbeck, Aron, Sieber, Christoph, da Silva, Luis Miguel Vieira, Gehlhoff, Felix, and Fay, Alexander
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Computer Science - Robotics ,Electrical Engineering and Systems Science - Systems and Control - Abstract
Mobile robots, becoming increasingly autonomous, are capable of operating in diverse and unknown environments. This flexibility allows them to fulfill goals independently and adapting their actions dynamically without rigidly predefined control codes. However, their autonomous behavior complicates guaranteeing safety and reliability due to the limited influence of a human operator to accurately supervise and verify each robot's actions. To ensure autonomous mobile robot's safety and reliability, which are aspects of dependability, methods are needed both in the planning and execution of missions for autonomous mobile robots. In this article, a twofold approach is presented that ensures fault removal in the context of mission planning and fault prevention during mission execution for autonomous mobile robots. First, the approach consists of a concept based on formal verification applied during the planning phase of missions. Second, the approach consists of a rule-based concept applied during mission execution. A use case applying the approach is presented, discussing how the two concepts complement each other and what contribution they make to certain aspects of dependability., Comment: Language: German. Dieser Beitrag wird eingereicht in: "dtec.bw-Beitr\"age der Helmut-Schmidt-Universit\"at/Universit\"at der Bundeswehr Hamburg: Forschungsaktivit\"aten im Zentrum f\"ur Digitalisierungs- und Technologieforschung der Bundeswehr dtec.bw"
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- 2024
29. Extending non-adiabatic rate theory to strong electronic couplings in the Marcus inverted regime
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Fay, Thomas P
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Physics - Chemical Physics ,Condensed Matter - Other Condensed Matter - Abstract
Electron transfer reactions play an essential role in many chemical and biological processes. Fermi's Golden rule, which assumes that the coupling between electronic states is small, has formed the foundation of electron transfer rate theory, however in short range electron/energy transfer reactions this coupling can become very large, and therefore Fermi's Golden Rule fails to make even qualitatively accurate rate predictions. In this paper I present a simple modified Golden Rule theory to describe electron transfer in the Marcus inverted regime at arbitrarily large electronic coupling strengths. The theory is based on an optimal global rotation of the diabatic states, which makes it compatible with existing methods for calculating Golden Rule rates that can account for nuclear quantum effects with anharmonic potentials. Furthermore the Optimal Golden Rule (OGR) theory can also combined with analytic theories for non-adiabatic rates, such as Marcus theory and Marcus-Levich-Jortner theory, offering clear physical insight into strong electronic coupling effects in non-adiabatic processes. OGR theory is also tested on a large set of spin-boson models and an anharmonic model against exact quantum dynamics calculations, where it performs well, correctly predicting rate turnover at large coupling strengths. Finally, an example application to a BODIPY-Anthracene photosensitizer reveals that strong coupling effects inhibit excited state charge recombination in this system, reducing the rate of this process by a factor of four. Overall OGR theory offers a new approach to calculating electron transfer rates at strong couplings, offering new physical insight into a range of non-adiabatic processes.
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- 2024
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30. Drone-Based Antenna Beam Calibration in the High Arctic
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Herman, Lawrence, Barbarie, Christopher, Agrawal, Mohan, Calinescu, Vlad, Chen, Simon, Chiang, H. Cynthia, Day, Cherie K., Egan, Eamon, Fay, Stephen, Gerodias, Kit, Goss, Maya, Hétu, Michael, Jacobs, Daniel C., Lalonde, Marc-Olivier R., McGee, Francis, Miara, Loïc, Orlowski-Scherer, John, and Sievers, Jonathan
- Subjects
Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
The development of low-frequency radio astronomy experiments for detecting 21-cm line emission from hydrogen presents new opportunities for creative solutions to the challenge of characterizing an antenna beam pattern. The Array of Long Baseline Antennas for Taking Radio Observations from the Seventy-ninth parallel (ALBATROS) is a new radio interferometer sited in the Canadian high Arctic that aims to map Galactic foregrounds at frequencies below $\sim$30 MHz. We present PteroSoar, a custom-built hexacopter outfitted with a transmitter, that will be used to characterize the beam patterns of ALBATROS and other experiments. The PteroSoar drone hardware is motivated by the need for user-servicing at remote sites and environmental factors that are unique to the high Arctic. In particular, magnetic heading is unreliable because the magnetic field lines near the north pole are almost vertical. We therefore implement moving baseline real time kinematic (RTK) positioning with two GPS units to obtain heading solutions with $\sim$1$^\circ$ accuracy. We present a preliminary beam map of an ALBATROS antenna, thus demonstrating successful PteroSoar operation in the high Arctic.
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- 2024
31. Exact confidence intervals for functions of parameters in the k-sample multinomial problem
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Sachs, Michael C, Gabriel, Erin E, and Fay, Michael P
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Statistics - Computation - Abstract
When the target of inference is a real-valued function of probability parameters in the k-sample multinomial problem, variance estimation may be challenging. In small samples, methods like the nonparametric bootstrap or delta method may perform poorly. We propose a novel general method in this setting for computing exact p-values and confidence intervals which means that type I error rates are correctly bounded and confidence intervals have at least nominal coverage at all sample sizes. Our method is applicable to any real-valued function of multinomial probabilities, accommodating an arbitrary number of samples with varying category counts. We describe the method and provide an implementation of it in R, with some computational optimization to ensure broad applicability. Simulations demonstrate our method's ability to maintain correct coverage rates in settings where the nonparametric bootstrap fails.
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- 2024
32. Improved modularity and new features in ipie: Toward even larger AFQMC calculations on CPUs and GPUs at zero and finite temperatures
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Jiang, Tong, Baumgarten, Moritz K. A., Loos, Pierre-François, Mahajan, Ankit, Scemama, Anthony, Ung, Shu Fay, Zhang, Jinghong, Malone, Fionn D, and Lee, Joonho
- Subjects
Physics - Chemical Physics - Abstract
ipie is a Python-based auxiliary-field quantum Monte Carlo (AFQMC) package that has undergone substantial improvements since its initial release [J. Chem. Theory Comput., 2023, 19(1): 109-121]. This paper outlines the improved modularity and new capabilities implemented in ipie. We highlight the ease of incorporating different trial and walker types and the seamless integration of ipie with external libraries. We enable distributed Hamiltonian simulations of large systems that otherwise would not fit on single CPU node or GPU card. This development enabled us to compute the interaction energy of a benzene dimer with 84 electrons and 1512 orbitals with multi-GPUs. Using CUDA and cupy for NVIDIA GPUs, ipie supports GPU-accelerated multi-slater determinant trial wavefunctions [arXiv:2406.08314] to enable efficient and highly accurate simulations of large-scale systems. This allows for near-exact ground state energies of multi-reference clusters, [Cu$_2$O$_2$]$^{2+}$ and [Fe$_2$S$_2$(SCH$_3$)$_4$]$^{2-}$. We also describe implementations of free projection AFQMC, finite temperature AFQMC, AFQMC for electron--phonon systems, and automatic differentiation in AFQMC for calculating physical properties. These advancements position ipie as a leading platform for AFQMC research in quantum chemistry, facilitating more complex and ambitious computational method development and their applications., Comment: 18 pages, 13 figures
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- 2024
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33. Toward a Method to Generate Capability Ontologies from Natural Language Descriptions
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da Silva, Luis Miguel Vieira, Köcher, Aljosha, Gehlhoff, Felix, and Fay, Alexander
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Computer Science - Artificial Intelligence ,Computer Science - Computation and Language - Abstract
To achieve a flexible and adaptable system, capability ontologies are increasingly leveraged to describe functions in a machine-interpretable way. However, modeling such complex ontological descriptions is still a manual and error-prone task that requires a significant amount of effort and ontology expertise. This contribution presents an innovative method to automate capability ontology modeling using Large Language Models (LLMs), which have proven to be well suited for such tasks. Our approach requires only a natural language description of a capability, which is then automatically inserted into a predefined prompt using a few-shot prompting technique. After prompting an LLM, the resulting capability ontology is automatically verified through various steps in a loop with the LLM to check the overall correctness of the capability ontology. First, a syntax check is performed, then a check for contradictions, and finally a check for hallucinations and missing ontology elements. Our method greatly reduces manual effort, as only the initial natural language description and a final human review and possible correction are necessary, thereby streamlining the capability ontology generation process., Comment: \c{opyright} 2024 IEEE. Personal use of this material is permitted. Permission from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertising or promotional purposes, creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works
- Published
- 2024
- Full Text
- View/download PDF
34. Progress Towards Decoding Visual Imagery via fNIRS
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Adamic, Michel, Avelino, Wellington, Brandenberger, Anna, Chiang, Bryan, Davis, Hunter, Fay, Stephen, Gregory, Andrew, Gupta, Aayush, Hotter, Raphael, Jiang, Grace, Leng, Fiona, Polcyn, Stephen, Ribeiro, Thomas, Scotti, Paul, Wang, Michelle, Xiong, Marley, and Xu, Jonathan
- Subjects
Electrical Engineering and Systems Science - Image and Video Processing ,Computer Science - Artificial Intelligence ,Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Machine Learning ,Quantitative Biology - Neurons and Cognition - Abstract
We demonstrate the possibility of reconstructing images from fNIRS brain activity and start building a prototype to match the required specs. By training an image reconstruction model on downsampled fMRI data, we discovered that cm-scale spatial resolution is sufficient for image generation. We obtained 71% retrieval accuracy with 1-cm resolution, compared to 93% on the full-resolution fMRI, and 20% with 2-cm resolution. With simulations and high-density tomography, we found that time-domain fNIRS can achieve 1-cm resolution, compared to 2-cm resolution for continuous-wave fNIRS. Lastly, we share designs for a prototype time-domain fNIRS device, consisting of a laser driver, a single photon detector, and a time-to-digital converter system.
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- 2024
35. Are you still on track!? Catching LLM Task Drift with Activations
- Author
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Abdelnabi, Sahar, Fay, Aideen, Cherubin, Giovanni, Salem, Ahmed, Fritz, Mario, and Paverd, Andrew
- Subjects
Computer Science - Cryptography and Security ,Computer Science - Computation and Language ,Computer Science - Computers and Society - Abstract
Large Language Models are commonly used in retrieval-augmented applications to execute user instructions based on data from external sources. For example, modern search engines use LLMs to answer queries based on relevant search results; email plugins summarize emails by processing their content through an LLM. However, the potentially untrusted provenance of these data sources can lead to prompt injection attacks, where the LLM is manipulated by natural language instructions embedded in the external data, causing it to deviate from the user's original instruction(s). We define this deviation as task drift. Task drift is a significant concern as it allows attackers to exfiltrate data or influence the LLM's output for other users. We study LLM activations as a solution to detect task drift, showing that activation deltas - the difference in activations before and after processing external data - are strongly correlated with this phenomenon. Through two probing methods, we demonstrate that a simple linear classifier can detect drift with near-perfect ROC AUC on an out-of-distribution test set. We evaluate these methods by making minimal assumptions about how user's tasks, system prompts, and attacks can be phrased. We observe that this approach generalizes surprisingly well to unseen task domains, such as prompt injections, jailbreaks, and malicious instructions, without being trained on any of these attacks. Interestingly, the fact that this solution does not require any modifications to the LLM (e.g., fine-tuning), as well as its compatibility with existing meta-prompting solutions, makes it cost-efficient and easy to deploy. To encourage further research on activation-based task inspection, decoding, and interpretability, we release our large-scale TaskTracker toolkit, featuring a dataset of over 500K instances, representations from six SoTA language models, and inspection tools.
- Published
- 2024
36. Schr\'odinger cat states of a nuclear spin qudit in silicon
- Author
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Yu, Xi, Wilhelm, Benjamin, Holmes, Danielle, Vaartjes, Arjen, Schwienbacher, Daniel, Nurizzo, Martin, Kringhøj, Anders, van Blankenstein, Mark R., Jakob, Alexander M., Gupta, Pragati, Hudson, Fay E., Itoh, Kohei M., Murray, Riley J., Blume-Kohout, Robin, Ladd, Thaddeus D., Anand, Namit, Dzurak, Andrew S., Sanders, Barry C., Jamieson, David N., and Morello, Andrea
- Subjects
Quantum Physics ,Condensed Matter - Mesoscale and Nanoscale Physics - Abstract
High-dimensional quantum systems are a valuable resource for quantum information processing. They can be used to encode error-correctable logical qubits, which has been demonstrated using continuous-variable states in microwave cavities or the motional modes of trapped ions. For example, high-dimensional systems can be used to realise `Schr\"{o}dinger cat' states, superpositions of widely displaced coherent states that can also be used to illustrate quantum effects at large scales. Recent proposals have suggested encoding qubits in high-spin atomic nuclei, finite-dimensional systems that can host hardware-efficient versions of continuous-variable codes. Here we demonstrate the creation and manipulation of Schrodinger cat states using the spin-7/2 nucleus of an antimony atom embedded in a silicon nanoelectronic device. We use a multi-frequency control scheme to produce spin rotations that preserve the symmetry of the qudit, and constitute logical Pauli operations for qubits encoded in the Schrodinger cat states. Our work demonstrates the ability to prepare and control nonclassical resource states, a prerequisite for applications in quantum information processing and quantum error correction using our scalable, manufacturable semiconductor platform., Comment: 40 pages including main and supplementary information
- Published
- 2024
37. Coordinating Cooperative Perception in Urban Air Mobility for Enhanced Environmental Awareness
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Häckel, Timo, von Roenn, Luca, Juchmann, Nemo, Fay, Alexander, Akkermans, Rinie, Tiedemann, Tim, and Schmidt, Thomas C.
- Subjects
Computer Science - Networking and Internet Architecture - Abstract
The trend for Urban Air Mobility (UAM) is growing with prospective air taxis, parcel deliverers, and medical and industrial services. Safe and efficient UAM operation relies on timely communication and reliable data exchange. In this paper, we explore Cooperative Perception (CP) for Unmanned Aircraft Systems (UAS), considering the unique communication needs involving high dynamics and a large number of UAS. We propose a hybrid approach combining local broadcast with a central CP service, inspired by centrally managed U-space and broadcast mechanisms from automotive and aviation domains. In a simulation study, we show that our approach significantly enhances the environmental awareness for UAS compared to fully distributed approaches, with an increased communication channel load, which we also evaluate. These findings prompt a discussion on communication strategies for CP in UAM and the potential of a centralized CP service in future research., Comment: If you cite this paper, please use the original reference: Timo H\"ackel, Luca von Roenn, Nemo Juchmann, Alexander Fay, Rinie Akkermans, Tim Tiedemann, and Thomas C. Schmidt. "Coordinating Cooperative Perception in Urban Air Mobility for Enhanced Environmental Awareness,'' In: 2024 International Conference on Unmanned Aircraft Systems (ICUAS). IEEE, June 2024
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- 2024
38. Schrödinger cat states of a nuclear spin qudit in silicon
- Author
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Yu, Xi, Wilhelm, Benjamin, Holmes, Danielle, Vaartjes, Arjen, Schwienbacher, Daniel, Nurizzo, Martin, Kringhøj, Anders, Blankenstein, Mark R. van, Jakob, Alexander M., Gupta, Pragati, Hudson, Fay E., Itoh, Kohei M., Murray, Riley J., Blume-Kohout, Robin, Ladd, Thaddeus D., Anand, Namit, Dzurak, Andrew S., Sanders, Barry C., Jamieson, David N., and Morello, Andrea
- Published
- 2025
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39. Hornworts reveal a spatial model for pyrenoid-based CO2-concentrating mechanisms in land plants
- Author
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Robison, Tanner A., Oh, Zhen Guo, Lafferty, Declan, Xu, Xia, Villarreal, Juan Carlos A., Gunn, Laura H., and Li, Fay-Wei
- Published
- 2025
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40. Pan-phylum genomes of hornworts reveal conserved autosomes but dynamic accessory and sex chromosomes
- Author
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Schafran, Peter, Hauser, Duncan A., Nelson, Jessica M., Xu, Xia, Mueller, Lukas A., Kulshrestha, Samarth, Smalley, Isabel, de Vries, Sophie, Irisarri, Iker, de Vries, Jan, Davies, Kevin, Villarreal, Juan Carlos A., and Li, Fay-Wei
- Published
- 2025
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41. Measuring and Demonstrating the Value of Patient Engagement Across the Medicines Lifecycle: A Patient Engagement Impact Measurement Framework: A Co-Created Framework to Measure the Impact of Systematic Patient Engagement
- Author
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Klein, Beyza, Perfetto, Eleanor M., Oehrlein, Elisabeth M., Weston, Fay, Lobban, Trudie C. A., and Boutin, Marc
- Published
- 2025
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42. Deep Insights: Redesigning Dual Enrollment as a Purposeful Pathway to College and Career Opportunity
- Author
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Columbia University, Community College Research Center (CCRC), Fink, John, Griffin, Sarah, Tulloch, Aurely Garcia, Jenkins, Davis, Fay, Maggie, Ramirez, Cat, Schudde, Lauren, and Steiger, Jessica
- Abstract
Dual enrollment equity pathways (DEEP) is a research-based framework for rethinking dual enrollment as a more equitable on-ramp to college programs of study that lead to family-supporting, career-path jobs for students who might not otherwise pursue education after college. The DEEP approach involves community colleges and K-12 schools partnering in four practice areas to (1) conduct outreach to underserved students and families to encourage their participation in dual enrollment, (2) align dual enrollment course offerings to career-technical associate and bachelor's degree programs in high-opportunity fields, (3) advise students in the exploration of their interests and the development of post-high school education and career path plans, and (4) support students by delivering high-quality instruction to build their confidence as college learners. In this report, the authors describe what they learned through field research at six promising community college--K-12 partnerships in Florida and Texas that have begun to extend guided pathways practices to dual enrollment offerings and that have achieved strong results using dual enrollment to expand college access and opportunities for Black, Hispanic, and low-income high school students. For each of the four practice areas, the authors highlight the problems or shortcomings of the conventional dual enrollment approach and explain what the partnerships are doing to rethink and reform dual enrollment in ways that motivate and prepare students from underserved groups to pursue postsecondary pathways to careers after high school. The authors then discuss two multifaceted DEEP leadership strategies that emerged from their fieldwork for (1) establishing a shared DEEP mindset and (2) enabling DEEP practices at scale. They also provide a set of discussion questions for college leaders to ask their K-12 schools in order to develop a strong partnership and shared vision. [For the companion report, see ED631291.]
- Published
- 2023
43. Chinese parents’ perceptions of including same-sex families in early childhood settings in Australia: Listening to voices of the first-generation immigrants
- Author
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Liang, Xinyun Meg, Hadley, Fay, and Waniganayake, Manjula
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- 2024
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44. Patients with Autism Spectrum or Intellectual Disability in the Psychiatric Emergency Department: Findings from a 10-year Retrospective Review
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Hong, Victor, Miller, Fiona, Kentopp, Shane, Reynard, Hannah, Biermann, Bernard, Beser, Can, Shamshair, Saad, Fay, Bailey, Shobassy, Ahmad, Stanley, Michelle, Weston, Cody, Ghaziuddin, Mohammad, and Ghaziuddin, Neera
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- 2024
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45. The 2024 generation
- Author
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Aggarwal, Shruthy Suresh, Andreani, Cristina, Deng, Zihou, Frede, Julia, Kameneva, Polina, Kovatcheva, Marta, Micevic, Goran, Nicolson, Fay, Puschhof, Jens, Roberts, Morgan, Wang, Gang, and Watson, Dionysios C.
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- 2024
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46. A Qualitative Evaluation of Health Professionals’ Perceptions State-wide Outreach Perinatal Mental Health Service
- Author
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Cibralic, Sara, Song, Deborah, Fay-Stammbach, Tracey, Tucker, Debbie, and Eapen, Valsamma
- Published
- 2024
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47. Charakterisierung einer deutschen Kohorte mit Visual-Snow-Syndrom
- Author
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Fay, Felix, Straube, Andreas, Ruscheweyh, Ruth, and Eren, Ozan Emre
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- 2024
- Full Text
- View/download PDF
48. Genome-wide analysis of hepatic DNA methylation reveals impact of epigenetic aging on xenobiotic metabolism and transport genes in an aged mouse model
- Author
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Abudahab, Sara, Kronfol, Mohamad M., Dozmorov, Mikhail G., Campbell, Thomas, Jahr, Fay M., Nguyen, Jasmine, AlAzzeh, Ola, Al Saeedy, Dalia Y., Victor, Ashley, Lee, Sera, Malay, Shravani, Lapato, Dana M., Halquist, Matthew S., McRae, MaryPeace, Deshpande, Laxmikant S., Slattum, Patricia W., Price, Elvin T., and McClay, Joseph L.
- Published
- 2024
- Full Text
- View/download PDF
49. Raising Translingual Awareness Toward Self-Directed Learning: an Exploratory Study of College Writing Using Google Translate
- Author
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Chen, Fay and Tsou, Wenli
- Published
- 2024
- Full Text
- View/download PDF
50. Assessment of the errors of high-fidelity two-qubit gates in silicon quantum dots
- Author
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Tanttu, Tuomo, Lim, Wee Han, Huang, Jonathan Y., Dumoulin Stuyck, Nard, Gilbert, Will, Su, Rocky Y., Feng, MengKe, Cifuentes, Jesus D., Seedhouse, Amanda E., Seritan, Stefan K., Ostrove, Corey I., Rudinger, Kenneth M., Leon, Ross C. C., Huang, Wister, Escott, Christopher C., Itoh, Kohei M., Abrosimov, Nikolay V., Pohl, Hans-Joachim, Thewalt, Michael L. W., Hudson, Fay E., Blume-Kohout, Robin, Bartlett, Stephen D., Morello, Andrea, Laucht, Arne, Yang, Chih Hwan, Saraiva, Andre, and Dzurak, Andrew S.
- Published
- 2024
- Full Text
- View/download PDF
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