18 results on '"Fatemeh Yazarlou"'
Search Results
2. Radiotherapy and breast cancer: finally, an lncRNA perspective on radiosensitivity and radioresistance
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Fatemeh Yazarlou, Ivan Martinez, and Leonard Lipovich
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breast neoplasms ,long non-coding RNAs ,non-coding RNAs ,precision medicine ,radioresistance ,radiosensitivity ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Radiotherapy (RT) serves as one of the key adjuvant treatments in management of breast cancer. Nevertheless, RT has two major problems: side effects and radioresistance. Given that patients respond differently to RT, it is imperative to understand the molecular mechanisms underlying these differences. Two-thirds of human genes do not encode proteins, as we have realized from genome-scale studies conducted after the advent of the genomic era; nevertheless, molecular understanding of breast cancer to date has been attained almost entirely based on protein-coding genes and their pathways. Long non-coding RNAs (lncRNAs) are a poorly understood but abundant class of human genes that yield functional non-protein-coding RNA transcripts. Here, we canvass the field to seek evidence for the hypothesis that lncRNAs contribute to radioresistance in breast cancer. RT-responsive lncRNAs ranging from “classical” lncRNAs discovered at the dawn of the post-genomic era (such as HOTAIR, NEAT1, and CCAT), to long intergenic lncRNAs such as LINC00511 and LINC02582, antisense lncRNAs such as AFAP-AS1 and FGD5-AS1, and pseudogene transcripts such as DUXAP8 were found during our screen of the literature. Radiation-related pathways modulated by these lncRNAs include DNA damage repair, cell cycle, cancer stem cells phenotype and apoptosis. Thus, providing a clear picture of these lncRNAs’ underlying RT-relevant molecular mechanisms should help improve overall survival and optimize the best radiation dose for each individual patient. Moreover, in healthy humans, lncRNAs show greater natural expression variation than protein-coding genes, even across individuals, alluding to their exceptional potential for targeting in truly personalized, precision medicine.
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- 2024
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3. Serotonin transporter functional polymorphisms potentially increase risk of schizophrenia separately and as a haplotype
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Rana Ghamari, Fatemeh Yazarlou, Zahra Khosravizadeh, Atefeh Moradkhani, Elaheh Abdollahi, and Fatemeh Alizadeh
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Medicine ,Science - Abstract
Abstract Schizophrenia is a severe, disabling psychiatric disorder with unclear etiology. Family-based, twins, and adoption studies have shown that genetic factors have major contributions in schizophrenia occurrence. Until now, many studies have discovered the association of schizophrenia and its comorbid symptoms with functional polymorphisms that lie within serotonin reuptake pathway genes. Here, we aimed to investigate the association of three variable number tandem repeats (VNTR) functional polymorphisms in MAOA and SLC6A4 with schizophrenia in the Iranian population. Two hundred and forty-one subjects with schizophrenia and three hundred and seventy age and sex-matched healthy controls were genotyped for MAOA promoter uVNTR, 5-HTTLPR, and STin2 polymorphisms. Genotyping was performed by polymerase chain reaction (PCR) with locus-specific primers and running the PCR product on agarose 2.5% gel electrophoresis. Finally, the statistical inference was performed using R programming language and Haploview software. MAOA promoter uVNTR analysis of allele frequency showed no differences between schizophrenia subjects and healthy controls in both males and females and no significant differences were observed between female cases and female controls in MAOA promoter uVNTR 4 repeat frequency. Also, there were no differences between Schizophrenia and healthy control groups in 5-HTTLPR allele and genotype frequency but, 5-HTTLPR S allele carriers are significantly more frequent among cases. In addition, STin2.12 repeats were significantly more frequent among schizophrenia patients. Genotype comparison suggested that 5-HTTLPR S allele and STin2.12 repeat carriers were significantly more frequent among schizophrenia cases and being STin2.12 repeat carrier significantly increase the risk of schizophrenia occurrence. Besides, analysis of haplotype showed stronger linkage disequilibrium between 5-HTTLPR and STin2 haplotype block in cases than controls. These results suggest that SLC6A4 functional polymorphisms potentially could play a possible role as risk factors for the incidence of schizophrenia.
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- 2022
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4. Genotype-phenotype correlation and description of two novel mutations in Iranian patients with glycogen storage disease 1b (GSD1b)
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Maryam Eghbali, Maryam Abiri, Saeed Talebi, Zahra Noroozi, Marjan Shakiba, Parastoo Rostami, Hosein Alimadadi, Mehri Najafi, Fatemeh Yazarlou, Ali Rabbani, and Mohammad Hossein Modarressi
- Subjects
GSD1b ,Autozygosity mapping ,Novel variants ,Genotype-phenotype correlation ,Medicine - Abstract
Abstract Background Glycogen storage disease (GSD) is a rare inborn error of the synthesis or degradation of glycogen metabolism. GSD1, the most common type of GSD, is categorized into GSD1a and GSD1b which caused by the deficiency of glucose-6-phosphatase (G6PC) and glucose-6-phosphate transporter (SLC37A4), respectively. The high rates of consanguineous marriages in Iran provide a desirable context to facilitate finding the homozygous pathogenic mutations. This study designates to evaluate the clinical and genetic characteristics of patients with GSD1b to assess the possible genotype-phenotype correlation. Results Autozygosity mapping was performed on nineteen GSD suspected families to suggest the causative loci. The mapping was done using two panels of short tandem repeat (STR) markers linked to the corresponding genes. The patients with autozygous haplotype block for the markers flanking the genes were selected for direct sequencing. Six patients showed autozygosity in the candidate markers for SLC37A4. Three causative variants were detected. The recurrent mutation of c.1042_1043delCT (p.Leu348Valfs*53) and a novel missense mutation of c.365G > A (p.G122E) in the homozygous state were identified in the SLC37A4. In silico analysis was performed to predict the pathogenicity of the variants. A novel whole SLC37A4 gene deletion using long-range PCR and sequencing was confirmed as well. Severe and moderate neutropenia was observed in patients with frameshift and missense variants, respectively. The sibling with the whole gene deletion has shown both severe neutropenia and leukopenia. Conclusions The results showed that the hematological findings may have an appropriate correlation with the genotype findings. However, for a definite genotype-phenotype correlation, specifically for the clinical and biochemical phenotype, further studies with larger sample sizes are needed.
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- 2020
- Full Text
- View/download PDF
5. The Effect of Lactobacillus casei Consumption in Improvement of Obsessive–Compulsive Disorder: an Animal Study
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Nafiseh Sadat Sanikhani, Reza Heidari, Paria Sadat Lavasani, Shilan Shafei, Elahe Motevaseli, Parvaneh Jafari, Soudeh Ghafouri-Fard, Mostafa Akbariqomi, Mohammad Hossein Modarressi, Nasim Vousooghi, Fatemeh Yazarlou, Department of Medical Genetics, Tehran University of Medical Sciences, and School of Advanced Technologies in Medicine, Tehran University of Medical Sciences
- Subjects
Male ,0301 basic medicine ,Obsessive-Compulsive Disorder ,Lactobacillus casei ,medicine.medical_specialty ,Quinpirole ,[SDV]Life Sciences [q-bio] ,medicine.medical_treatment ,030106 microbiology ,Prefrontal Cortex ,Serotonergic ,Microbiology ,Dopamine agonist ,law.invention ,03 medical and health sciences ,Probiotic ,Neurotrophic factors ,law ,Fluoxetine ,Internal medicine ,medicine ,Animals ,Receptor, Serotonin, 5-HT2A ,Rats, Wistar ,Molecular Biology ,Saline ,ComputingMilieux_MISCELLANEOUS ,Serotonin Plasma Membrane Transport Proteins ,Behavior, Animal ,biology ,business.industry ,Brain-Derived Neurotrophic Factor ,Probiotics ,biology.organism_classification ,Rats ,3. Good health ,Disease Models, Animal ,Lacticaseibacillus casei ,030104 developmental biology ,Endocrinology ,Gene Expression Regulation ,Dopamine Agonists ,Antidepressive Agents, Second-Generation ,Molecular Medicine ,business ,medicine.drug - Abstract
Obsessive–compulsive disorder (OCD) is an important neuropsychiatric disorder worldwide. Common treatments of OCD include serotonergic antidepressants, which can cause potentially serious side effects. We assessed the effects of Lactobacillus casei (L. casei) Shirota consumption in an animal model of OCD. OCD-like symptoms were induced in rats by the chronic injection of the D2/D3 dopamine agonist quinpirole hydrochloride. Rats were classified into five groups of 6 rats. Four groups were injected chronically with quinpirole (0.5 mg/kg, twice weekly for 5 weeks). They were fed with L. casei Shirota (109 CF/g, daily for 4 weeks) (group 1), fluoxetine (10 mg/kg, daily for 4 weeks) (group 2), combination of L. casei Shirota and fluoxetine (group 3), and normal saline (positive control group). The last group did not receive dopamine agonist and was only injected with saline (negative control group). Expression levels of brain-derived neurotrophic factor (Bdnf), solute carrier family 6 member 4 (Slc6a4), and 5-hydroxytryptamine receptor type 2A (Htr2a) were assessed in orbitofrontal cortex tissues of all rats. Behavioral tests showed improvement of OCD signs in rats treated with L. casei Shirota, fluoxetine, and a combination of drugs. Quantitative PCR analysis showed a remarkable decrease in the expression of Bdnf and an increase in the expression of Htr2a in quinpirole-treated rats. After treatment with L. casei Shirota and fluoxetine, the expression level of Bdnf was increased remarkably, whereas Htr2a expression was decreased. The current study showed the effectiveness of L. casei Shirota in the treatment of OCD in a rat model. The beneficial effects of this probiotic are possibly exerted through the modulation of serotonin-related genes expression.
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- 2020
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6. Contributors
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Mario A. Acuña, Rohit Aiyer, Sergiu Albu, Ahmad Altarifi, Duygun Altıntaş Aykan, María Jesús Álvarez-Cubero, Richard T. Ambron, Verónica Arenas-Rodríguez, Yosuke Arima, Nayara Anitelli Artero, Janete S. Bandeira, Ricardo Becerro-de-Bengoa-Vallejo, Eric J. Bellefroid, Mongi Benjeddou, Sergio Marques Borghi, César Calvo-Lobo, Taís de Campos Lima, Yolanda Campos-Jurado, Thacyana Teixeira Carvalho, Rubia Casagrande, Wolnei Caumo, Rok Cerne, Krishnan Chakravarthy, James M. Cook, Fabiano V. Costa, Sergio Cuenca-López, Javier Cuitavi, Maya D’Eon, Rodolfo Delgado-Lezama, Simon Desiderio, Jairo Alberto Dussan-Sarria, Fernando Estévez-López, Camila Rodrigues Ferraz, Janet L. Fisher, Anelise Franciosi, Úrzula Franco-Enzástiga, Masashi Fujitani, Soudeh Ghafouri-Fard, Lalit K. Golani, Shaila Gowda, Vinicio Granados-Soto, Semih Gungor, Mogge Hajiesmaeil, Hee Chul Han, Natalie Hellman, Luis Eduardo Hernández-Reyes, Lucia Hipólito, S.A. Holmes, Allan V. Kalueff, Fernando Kasanetz, Manal Kassab, Seonghoon Kim, Johann Klein, Daniel E. Knutson, Hannu Kokki, Merja Kokki, Yarim E. De la Luz-Cuellar, Natalia Landsberg, Hans Linsenbardt, Daniel López-López, Jesús D. Lorente, Marta Elena Losa-Iglesias, Celina Monteiro da Cruz Lotufo, Luis Javier Martínez-González, Eva María Martínez-Jiménez, Victoria Mazoteras-Pardo, Mary W. Meagher, Desanka Milanović, Keisuke Miyamoto, Janet Murbartián, Thomas Nevian, Khawla Q. Nuseir, Masahiro Ohsawa, Yoshinori Otani, Antonella Paladini, Sara Palermo, Eui Ho Park, Jeong-wook Park, Vinood B. Patel, Željko Pavković, Ana M. Peiró, Vesna Pešić, M.E. Pierce, Witold H. Polanski, Victor R. Preedy, A. Quinlan, Rajkumar Rajendram, Fernanda Soares Rasquel-Oliveira, Guadalupe Raya-Tafolla, Martina Rekatsina, Jamie L. Rhudy, David Rodríguez-Sanz, Carlos Romero-Morales, Robert Root-Bernstein, Luiz V. Rosa, Denis B. Rosemberg, Thomas Rutledge, Giorgia Saltelli, Marta San-Antolín-Gil, Débora de Oliveira Santos, Telma Saraiva-Santos, Jamie Sleigh, Jodi L. Smith, Maryam Sobhani, Ying-Ju Sung, Charles Akos Szabó, Jorge E. Torres-López, Giustino Varrassi, Vishal Varshney, Simon Vermeiren, Waldiceu A. Verri, Logan Voss, Jeffrey M. Witkin, Zizhen Wu, Qing Yang, Fatemeh Yazarlou, and Zainul Amiruddin Zakaria
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- 2022
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7. A new mutation in NTRK1 gene is associated with congenital insensitivity to pain without anhidrosis
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Mogge Hajiesmaeil, Fatemeh Yazarlou, Maryam Sobhani, and Soudeh Ghafouri-Fard
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Insensitivity to pain ,NTRK1, Insensitivity to pain ,NTRK1 - Published
- 2022
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8. Emerging role of let-7 family in the pathogenesis of hematological malignancies
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Fatemeh Yazarlou, Soudeh Ghafouri-Fard, and Sepideh Kadkhoda
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Context (language use) ,RM1-950 ,Biology ,Malignancy ,medicine.disease_cause ,Pathogenesis ,Cell Line, Tumor ,microRNA ,medicine ,Animals ,Humans ,Gene Regulatory Networks ,Cancer ,Pharmacology ,Leukemia ,General Medicine ,medicine.disease ,Gene Expression Regulation, Neoplastic ,Let-7 ,MicroRNAs ,Hematologic Neoplasms ,Cancer research ,Therapeutics. Pharmacology ,Carcinogenesis ,MiRNA ,Biogenesis ,Signal Transduction - Abstract
Let-7 includes a family of miRNA which are implicated in the developmental processes as well as carcinogenesis. This miRNA family has been shown to influence pathogenesis of a variety of hematological malignancies through changing expression of a number of oncogenic pathways, particularly those related with MYC. Expression of these miRNAs has been found to be different between distinct hematological malignancies or even between cytogenetically-defined subgroups of a certain malignancy. In the current review, we summarize the data regarding biogenesis, genomic locations, targets and regulatory network of this miRNA family in the context of hematological malignancies.
- Published
- 2021
9. Fine-tuning of routine combined first- trimester screening: The ratio of serum-free- beta-human chorionic gonadotropin (fβ-hCG) to pregnancy-associated plasma protein-A (PAPP-A) could improve performance of Down syndrome screening program, a retrospective cohort study in Iran
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Mohammad Mahdi Taheri Amin, Soudeh Ghafouri-Fard, Pourandokht Saadati, Shahram Savad, Saloomeh Amidi, Mohammad-Hossein Modarresi, Bahareh Yazdani, Fatemeh Yazarlou, Soudabeh Jamali, Sarang Younesi, and Elham Razmpoosh
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medicine.medical_specialty ,Down syndrome ,Pregnancy-associated plasma protein A ,Immunology ,Medical laboratory ,Iran ,State Medicine ,Odds ,03 medical and health sciences ,0302 clinical medicine ,Pregnancy ,medicine ,Immunology and Allergy ,Cutoff ,Humans ,Pregnancy-Associated Plasma Protein-A ,Chorionic Gonadotropin, beta Subunit, Human ,030212 general & internal medicine ,Retrospective Studies ,030219 obstetrics & reproductive medicine ,Obstetrics ,business.industry ,Multiple of the median ,Retrospective cohort study ,General Medicine ,Guideline ,medicine.disease ,Pregnancy Trimester, First ,Female ,Down Syndrome ,business ,Biomarkers - Abstract
OBJECTIVES: To evaluate the performance of the current national screening policy for Down syndrome (DS) in Iran and suggest a more efficient protocol with a wealth of a large series of first-trimester screening (FTS) data obtained from Nilou medical laboratory. To fulfill this aim, detection rate (DR), positive screening rate (PSR), false negative rate (FNR) and odds of being affected given a positive results (OAPR) were calculated at different cutoff risk. In the latest update of DS screening program in Iran, there is no place for intermediate group to be further investigated. Next, we proposed a novel parameter namely the ratio of fβ-hCG multiple of the median (MoM) value to PAPP-A MoM value to delicately categorize FTS results in a way that reduce FNR without imposing unnecessary anxious and extra money on most families. METHODS: The present investigation was conducted retrospectively on 197,210 pregnancies undergoing FTS for aneuploidies in Nilou medical laboratory, Tehran, Iran, from March 2015 to February 2016. RESULTS: Intermediate risk group is important as 23 out of 45 FN fell in the range 1:250 to 1:1100. By applying the proposed index, the ratio of fβ-hCG MoM to PAPP-A MoM and subsequent decision about NIPT, 8 out of 23 FN cases in intermediate group could be detected. CONCLUSION: Compared with the current policy, our novel proposed approach had better performance and could be applied by the Iran National Health Service to improve the screening program guideline.
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- 2020
10. Expression analysis of apoptosis-related genes in bladder cancer patients
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Vahid Kholghi Oskooei, Niusha Samadaian, Leila Nekoohesh, Tamouchin Moharrami, Mandana Afsharpad, Soudeh Ghafouri-Fard, Mohammad Hossein Modarressi, and Fatemeh Yazarlou
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0301 basic medicine ,Bladder cancer ,business.industry ,Urinary system ,Cell ,Cancer ,Urine ,medicine.disease ,BAG3 ,03 medical and health sciences ,030104 developmental biology ,medicine.anatomical_structure ,Expression analysis ,Genetics ,Cancer research ,medicine ,business ,Gene ,Genetics (clinical) - Abstract
Background Bladder cancer (BC) is a frequent cancer with high morbidity and mortality. Method We assessed expression of NMP22, BAG3, BCL2 and BAX in BC samples, adjacent non-neoplastic tissues (ANNTs), urinary cell pellets (UCP) of the same patients and non-malignant conditions (NM). Results NMP22 was up-regulated in tumoral tissues compared with ANNTs and in UCP of BC patients compared with UCP of NM. BCL2 and BAX were down-regulated in BC tissues compared with ANNTs. BAG3 and BAX were down-regulated in UCP of BC compared with NM. The combination of all four genes had 100% sensitivity and specificity for detection of BC in urine. Conclusion Expression analysis of these genes in tumor or urine is a tool for detection of BC.
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- 2018
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11. Expression analysis of a panel of cancer-testis antigens in bladder cancer
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Soudeh Ghafouri-Fard, Vahid Kholghi-Oskooei, Mohammad Hossein Modarressi, Mandana Afsharpad, Leila Nekoohesh, Hanie M Rad, Fatemeh Yazarlou, and Tamouchin Moharrami
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Male ,0301 basic medicine ,Diagnostic information ,Urinary system ,Cell ,Kinesins ,urologic and male genital diseases ,03 medical and health sciences ,0302 clinical medicine ,Antigen ,Antigens, Neoplasm ,Testis ,Expression analysis ,Biomarkers, Tumor ,medicine ,Humans ,In patient ,Aged ,Pharmacology ,Bladder cancer ,business.industry ,Intracellular Signaling Peptides and Proteins ,Membrane Proteins ,RNA-Binding Proteins ,General Medicine ,Middle Aged ,medicine.disease ,Cystatins ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,medicine.anatomical_structure ,Urinary Bladder Neoplasms ,030220 oncology & carcinogenesis ,Cancer research ,Molecular Medicine ,Cancer/testis antigens ,Neoplasm Recurrence, Local ,Carrier Proteins ,Transcriptome ,business - Abstract
Aim: Cancer-testis antigens (CTAs) have specific expression in gametogenic tissues and aberrant expression in cancers. Materials & methods: We assessed expression of five testis-specific genes namely KIF2B, CST8, TMEM225, RBM46, OAZ3 in bladder cancer tissues, adjacent non-neoplastic tissues and urinary cell pellets (UCPs) of bladder cancer patients compared with nonmalignant conditions.Results: Expressions of all CTAs were higher in UCPs of bladder cancer patients compared with nonmalignant conditions. RBM46 expression in UCPs was higher in patients with recurrent tumors compared with primary tumors and in patients without hematuria compared with those having hematuria. TMEM225 expression in tumoral tissues was higher in high-grade tumors compared with low-grade tumors. Conclusion: Expression analysis of CTAs in UCP might provide diagnostic information about bladder cancer.
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- 2018
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12. Urinary exosomal expression of long non-coding RNAs as diagnostic marker in bladder cancer
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Maryam Eghbali, Leila Farhady Tooli, Elahe Motevaseli, Mandana Afsharpad, Leila Nekoohesh, Vahid Kholghi Oskooei, Soudeh Ghafouri-Fard, Seyed Javad Mowla, Fatemeh Yazarlou, and Mohammad Hossein Modarressi
- Subjects
0301 basic medicine ,Urinary system ,Cell ,urologic and male genital diseases ,Exosome ,03 medical and health sciences ,lncRNA ,0302 clinical medicine ,medicine ,exosome ,Original Research ,MALAT1 ,Bladder cancer ,business.industry ,Diagnostic marker ,medicine.disease ,humanities ,female genital diseases and pregnancy complications ,Microvesicles ,030104 developmental biology ,Transitional cell carcinoma ,medicine.anatomical_structure ,Oncology ,Cancer Management and Research ,030220 oncology & carcinogenesis ,Cancer research ,bladder cancer ,business - Abstract
Fatemeh Yazarlou,1 Mohammad Hossein Modarressi,1 Seyed Javad Mowla,2 Vahid Kholghi Oskooei,3 Elahe Motevaseli,4 Leila Farhady Tooli,5 Leila Nekoohesh,6 Maryam Eghbali,1 Soudeh Ghafouri-Fard,3 Mandana Afsharpad7 1Department of Medical Genetics, School of Medicine, Tehran University of Medical Sciences, Tehran, Iran; 2Faculty of Biological Sciences, Department of Genetics, Tarbiat Modares University, Tehran, Iran; 3Department of Medical Genetics, Shahid Beheshti University of Medical Sciences, Tehran, Iran; 4Department of Molecular Medicine, School of Advanced Technologies in Medicine, Tehran University of Medical Sciences, Tehran, Iran; 5Department of Microbiology, School of Biology, College of Science, Tehran University, Tehran, Iran; 6Department of Medical Biotechnology, School of Advanced Technologies in Medicine, Tehran University of Medical Sciences, Tehran, Iran; 7Cancer Control Research Center, Cancer Control Foundation, Iran University of Medical Sciences, Tehran, Iran Background: Long non-coding RNAs (lncRNAs) and exosomes have been regarded as components of cell signal transmission that modulate indigenous cellular microenvironments. Exosomes also participate in relocation of functional lncRNAs between cells. Methods: In the present study, we evaluated expression of LINC00355, LINC00958, UCA1-201, UCA1-203, and MALAT1 lncRNAs in urinary exosomes isolated from transitional cell carcinoma (TCC) of bladder, non-malignant urinary disorders, and normal subjects. Results: LINC00355, UCA1-203, and MALAT1 expression was significantly higher in TCC patients compared to controls (non-malignant or normal samples). However, UCA1-201 expression was significantly decreased in TCC patients compared with controls. LINC00355 and MALAT1 expression was significantly lower in cigarette smokers and opium-addicted TCC patients, respectively. On the other hand, LINC00355 expression tended to be higher in opium-addicted TCC patients. The proposed panel of lncRNAs (composed of UCA1-201, UCA1-203, MALAT1, and LINC00355) had 92% sensitivity and 91.7% specificity for diagnosis of bladder cancer from normal samples. Conclusion: Transcript levels of lncRNAs in urinary exosomes are potential diagnostic biomarkers in bladder cancer. Keywords: lncRNA, exosome, bladder cancer
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- 2018
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13. Genotype-phenotype correlation and description of two novel mutations in Iranian patients with glycogen storage disease 1b (GSD1b)
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Saeed Talebi, Zahra Noroozi, Maryam Eghbali, Ali Rabbani, Mehri Najafi, Fatemeh Yazarlou, Mohammad Hossein Modarressi, Marjan Shakiba, Maryam Abiri, Hosein Alimadadi, and Parastoo Rostami
- Subjects
G6PC ,Genotype-phenotype correlation ,Monosaccharide Transport Proteins ,lcsh:Medicine ,Context (language use) ,Biology ,Glycogen Storage Disease Type I ,Iran ,Antiporters ,Frameshift mutation ,Genotype ,medicine ,Missense mutation ,Glycogen storage disease ,Humans ,Pharmacology (medical) ,Gene ,Genetics (clinical) ,Genetic Association Studies ,Genetics ,Research ,lcsh:R ,General Medicine ,medicine.disease ,Autozygosity mapping ,Phenotype ,Mutation ,Microsatellite ,Novel variants ,GSD1b - Abstract
Background Glycogen storage disease (GSD) is a rare inborn error of the synthesis or degradation of glycogen metabolism. GSD1, the most common type of GSD, is categorized into GSD1a and GSD1b which caused by the deficiency of glucose-6-phosphatase (G6PC) and glucose-6-phosphate transporter (SLC37A4), respectively. The high rates of consanguineous marriages in Iran provide a desirable context to facilitate finding the homozygous pathogenic mutations. This study designates to evaluate the clinical and genetic characteristics of patients with GSD1b to assess the possible genotype-phenotype correlation. Results Autozygosity mapping was performed on nineteen GSD suspected families to suggest the causative loci. The mapping was done using two panels of short tandem repeat (STR) markers linked to the corresponding genes. The patients with autozygous haplotype block for the markers flanking the genes were selected for direct sequencing. Six patients showed autozygosity in the candidate markers for SLC37A4. Three causative variants were detected. The recurrent mutation of c.1042_1043delCT (p.Leu348Valfs*53) and a novel missense mutation of c.365G > A (p.G122E) in the homozygous state were identified in the SLC37A4. In silico analysis was performed to predict the pathogenicity of the variants. A novel whole SLC37A4 gene deletion using long-range PCR and sequencing was confirmed as well. Severe and moderate neutropenia was observed in patients with frameshift and missense variants, respectively. The sibling with the whole gene deletion has shown both severe neutropenia and leukopenia. Conclusions The results showed that the hematological findings may have an appropriate correlation with the genotype findings. However, for a definite genotype-phenotype correlation, specifically for the clinical and biochemical phenotype, further studies with larger sample sizes are needed.
- Published
- 2020
14. A new mutation in NTRK1 gene is associated with congenital insensitivity to pain without anhidrosis
- Author
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Soudeh Ghafouri-Fard, Mogge Hajiesmaeil, Maryam Sobhani, and Fatemeh Yazarlou
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0301 basic medicine ,Genetics ,Proband ,Sanger sequencing ,business.industry ,NTRK1 ,Mutation ,Insensitivity to pain ,medicine.disease ,Frameshift mutation ,03 medical and health sciences ,symbols.namesake ,030104 developmental biology ,0302 clinical medicine ,Germline mutation ,Congenital insensitivity to pain with anhidrosis ,030220 oncology & carcinogenesis ,medicine ,symbols ,Anhidrosis ,medicine.symptom ,business ,Genetics (clinical) ,Exome sequencing ,Congenital insensitivity to pain - Abstract
Congenital insensitivity to pain with anhidrosis (CIPA) is a very rare autosomal recessive disease characterized by pain insensitivity, frequent intermittent fevers, anhidrosis, self-mutilating actions and mental retardation. Germline mutations in NTRK1 gene have been associated with CIPA. In the current study, we describe the first reported case from Iran. The patient was a 10 month old girl born to a healthy consanguineous Iranian parent with family history of CIPA. Unexpectedly, the cases had normal sweating. Whole exome sequencing revealed a new likely pathogenic mutation in the exon 13 of NTRK1 gene (NM_002529.3) in the proband in homozygote state (c.1524_1531dupGGACATCG, p.Val511Glyfs*39). The frameshift mutation leads to early termination of the coding sequence, which is anticipated to affect the protein function. Sanger sequencing confirmed the results in the proband and other affected members of the family. In addition, Sanger sequencing showed that parents carry the same mutation in heterozygote state. The current study shows a different phenotypic variant of CIPA in Iranian population and adds to the repository NTRK1 mutations.
- Published
- 2019
15. Disease-only alleles at the extreme ends of the human ZMYM3 exceptionally long 5' UTR short tandem repeat in bipolar disorder: A pilot study
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Esmaeil Shahsavand, Ahmad Delbari, Negar Mousavi, Mina Ohadi, Fatemeh Yazarlou, Tamouchin Moharrami, Ali Bozorgmehr, and Fatemeh Alizadeh
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Untranslated region ,Adult ,Male ,Bipolar Disorder ,Five prime untranslated region ,Pilot Projects ,Disease ,Biology ,Polymerase Chain Reaction ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,Bipolar disorder ,Allele ,Gene ,Alleles ,Genetics ,Nuclear Proteins ,Middle Aged ,medicine.disease ,humanities ,030227 psychiatry ,Psychiatry and Mental health ,Clinical Psychology ,Schizophrenia ,Microsatellite ,5' Untranslated Regions ,030217 neurology & neurosurgery ,Microsatellite Repeats - Abstract
The X-linked ZMYM3 gene (also known as ZNF261) contains the longest STR, (GA)32, identified in a human protein-coding gene 5'UTR (ENST00000373998.5: ZMYM3-207). This STR reaches maximum length in human, and is located in a complex string of four consecutive GA-STRs with a human-specific formula across the complex. A previous study in Iranian male schizophrenia (SCZ) patients revealed co-occurrence of the extreme short and long alleles of the STR with SCZ. Here we studied the allelic distribution of this STR in bipolar disorder (BD) type I. The interval encompassing the human ZMYM3 STR complex was PCR-amplified and sequenced in 546 male subjects, consisting of 157 BD patients and 389 controls.We found three alleles at the extreme short (17-repeat) and long (38- and 43-repeat) ends of the allele distribution curve in the BD cases (4.4% of the BD alleles) that were not detected in the controls (Mid p0.0001). These alleles overlapped with the extreme disease-only alleles detected previously in the SCZ patients. Domain reconstruction of the GA-STR complex revealed significant structural alteration as a result of various sequence repeats and nucleotide compositions at the inter and intraspecies levels.The ZMYM3 "exceptionally long" 5' UTR STR findings may alter our perspective of disease pathogenesis in psychiatric disorders, and set an example in which the low frequency alleles at the extreme short and long ends of the human STRs are, at least in part, a result of natural selection against these alleles and their unambiguous link to major human disorders.
- Published
- 2018
16. Urine exosome gene expression of cancer-testis antigens for prediction of bladder carcinoma
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Nafiseh Sadat Sanikhani, Leila Farhady Tooli, Leila Nekoohesh, Vahid Kholghi Oskooei, Elahe Motevaseli, Seyed Javad Mowla, Fatemeh Yazarlou, Mandana Afsharpad, Soudeh Ghafouri-Fard, and Mohammad Hossein Modarressi
- Subjects
0301 basic medicine ,Bladder cancer ,business.industry ,Urinary system ,Cancer ,Hyperplasia ,medicine.disease ,Exosome ,humanities ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Immune system ,Oncology ,Cancer Management and Research ,030220 oncology & carcinogenesis ,Cancer research ,Carcinoma ,bladder cancer ,exosome ,Medicine ,Cancer/testis antigens ,cancer-testis antigen ,business ,Original Research - Abstract
Fatemeh Yazarlou,1 Seyed Javad Mowla,2 Vahid Kholghi Oskooei,3 Elahe Motevaseli,4 Leila Farhady Tooli,5 Mandana Afsharpad,6 Leila Nekoohesh,7 Nafiseh Sadat Sanikhani,4 Soudeh Ghafouri-Fard,3 Mohammad Hossein Modarressi1 1Department of Medical Genetics, School of Medicine, Tehran University of Medical Sciences, Tehran, Iran; 2Faculty of Biological Sciences, Department of Genetics, Tarbiat Modares University, Tehran, Iran; 3Department of Medical Genetics, Shahid Beheshti University of Medical Sciences, Tehran, Iran; 4Department of Molecular Medicine, School of Advanced Technologies in Medicine, Tehran University of Medical Sciences, Tehran, Iran; 5Department of Microbiology, School of Biology, College of Science, Tehran University, Tehran, Iran; 6Cancer Control Research Center, Cancer Control Foundation, Iran University of Medical Sciences, Tehran, Iran; 7Department of Medical Biotechnology, School of Advanced Technologies in Medicine, Tehran University of Medical Sciences, Tehran, Iran Background: Exosomes have been regarded as emerging tools for cancer diagnosis. Tumor-derived exosomes contain molecules that enhance cancer progression and affect immune responses. Material and methods: In the present study, we evaluated expression of seven cancer-testis antigens (CTAs) that are regarded as putative biomarkers and immunotherapeutic targets along with NMP22 in urinary exosomes of bladder cancer patients, healthy subjects and patients affected with nonmalignant urinary disorders. Results: Exosomal expression of MAGE-B4 was significantly higher in bladder cancer patients compared with normal samples (expression ratio=2.68, P=0.01). However, its expression was lower in bladder cancer patients compared with benign prostate hyperplasia (BPH) patients (expression ratio=0.17, P=0.01). Exosomal expression of NMP22 was significantly higher in bladder cancer patients compared with BPH patients (expression ratio=9.22, P=0.02). Expressions of other genes were not significantly different between bladder cancer patients and normal/nonmalignant samples. We found significant correlation between MAGE-A3 and MAGE-B4 expressions in exosomes obtained from controls. In addition, TSGA10 expression was correlated with expression of NMP22 in both cancer patients and controls. Conclusion: The present study provides evidences for differential expression of CTAs in urinary exosomes of bladder cancer patients and urogenital disorders and warrants further studies for assessment of their significance in cancer diagnosis and immunotherapeutic approaches. Keywords: cancer-testis antigen, bladder cancer, exosome
- Published
- 2018
17. A potential clinical significance of DAB2IP and SPRY2 transcript variants in prostate cancer
- Author
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Mohammad Hossein Modarressi, Ali Najafi, Fatemeh Yazarlou, Mohsen Ayati, Pouya Salehipour, Naser Rakhshani, Mandana Afsharpad, and Niusha Samadaian
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0301 basic medicine ,Male ,endocrine system ,Carcinogenesis ,Biology ,medicine.disease_cause ,Receptor tyrosine kinase ,Pathology and Forensic Medicine ,03 medical and health sciences ,Prostate cancer ,Prostate ,medicine ,Humans ,Aged ,Messenger RNA ,Intracellular Signaling Peptides and Proteins ,Cancer ,Membrane Proteins ,Prostatic Neoplasms ,Cell Biology ,Middle Aged ,medicine.disease ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,medicine.anatomical_structure ,Cell Transformation, Neoplastic ,ras GTPase-Activating Proteins ,SPRY2 ,Cancer research ,biology.protein ,Signal transduction - Abstract
Deregulation of key signaling pathways is one of the primary phenomena in carcinogenesis. DAB2IP and SPRY2 are regulatory elements, which act as feedback inhibitors of receptor tyrosine kinases signaling in mitogen-activated protein kinase pathway. These elements have also been implicated in the pathophysiology of cancer. Therefore, this study is aimed to investigate the expression of all known splice variants of DAB2IP and SPRY2 in prostate tissue. Fresh Prostate tissue samples (50 prostate cancer/ matched normal tissue and 30 BPH) were collected and total RNA was extracted followed by cDNA synthesis. The expression of DAB2IP and SPRY2 transcript variants were evaluated using RT-PCR and quantitative Real-time PCR. The results indicated significant down-regulation of DAB2IP transcript variant 1 in cancerous tissues compared to paired normal tissues (P = 0.001) as well as SPRY2 transcript variant 2 in cancerous tissues in comparison with the normal counterparts and BPH (P = 0.008 and P = 0.025, respectively). In addition, there was a significant negative correlation between DAB2IP.1 and SPRY2.2 expression with PSA levels in prostate cancer (P = 0.039 ρ =−0.24 and P = 0.045 ρ =−0.3, respectively). Interestingly, the down-regulation of DAB2IP.1 mRNA and SPRY2.2 mRNA was positively correlated in tumor samples (P = 0.002 ρ = 0.434). For the first time, this experiment highlights the deregulation of DAB2IP and SPRY2 transcript variants in human prostate cancer. The present study confirms and extends the previous reports through indicating transcript-specific down-regulation and significant association of DAB2IP and SPRY2 in prostate tumorigenesis.
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- 2018
18. Certain TSGA10 polymorphisms are not associated with male infertility in Iranian population
- Author
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Mohammad Mehdi Akhondi, Nasibeh Soltani, Fatemeh Yazarlou, Maryam Sobhani, Soudeh Ghafouri-Fard, and Mohammad Hossein Modarressi
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0301 basic medicine ,Wild type ,Physiology ,Single-nucleotide polymorphism ,Biology ,medicine.disease ,Male infertility ,Iranian population ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Sample size determination ,030220 oncology & carcinogenesis ,Genotype ,Genetics ,medicine ,Genotyping ,Gene - Abstract
Testis specific protein 10 (TSGA10) is expressed in normal adult testis and has been suggested to be involved in the normal function of sperms. Tsga10 expression has a role in the protection of spermatozoa and enhancement of male fertility. This gene has a number of single nucleotide polymorphisms (SNPs). In the current study, we genotyped rs3811553, rs200902126 and rs17852533 in 156 fertile men, 150 oligospermic and 150 azoospermic men using PCR-RFLP method. The genotyping showed that all assessed individuals were homozygote for wild type allele of both rs3811553 and rs200902126. In the case of the rs17852533, although we found the three genotypes in the studied individuals, there was no significant difference in distribution of these genotypes between the study groups. The current study shows insignificance of these SNPs in male infertility. However, future studies in larger sample sizes are needed to reach conclusive results.
- Published
- 2019
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