RNA editing is a co- or post-transcriptional modification through which some cells can make discrete changes to specific nucleotide sequences within an RNA molecule after transcription. Previous studies found that RNA editing may be critically involved in cancer and aging. However, the function of RNA editing in human early embryo development is still unclear. In this study, through analyzing single cell RNA sequencing data, 36.7% RNA editing sites were found to have a have differential editing ratio among early embryo developmental stages, and there was a great reprogramming of RNA editing rates at the 8-cell stage, at which most of the differentially edited RNA editing sites (99.2%) had a decreased RNA editing rate. In addition, RNA editing was more likely to occur on RNA splicing sites during human early embryo development. Furthermore, long non-coding RNA (lncRNA) editing sites were found more likely to be on RNA splicing sites (odds ratio = 2.19, P = 1.37×10−8), while mRNA editing sites were less likely (odds ratio = 0.22, P = 8.38×10−46). Besides, we found that the RNA editing rate on lncRNA had a significantly higher correlation coefficient with the percentage spliced index (PSI) of lncRNA exons (R = 0.75, P = 4.90×10−16), which indicated that RNA editing may regulate lncRNA splicing during human early embryo development. Finally, functional analysis revealed that those RNA editing-regulated lncRNAs were enriched in signal transduction, the regulation of transcript expression, and the transmembrane transport of mitochondrial calcium ion. Overall, our study might provide a new insight into the mechanism of RNA editing on lncRNAs in human developmental biology and common birth defects., Author summary RNA editing is a process by which selected nucleotides on RNA molecules are changed post transcription of RNA. This results in changes RNA sequences that are different from the corresponding DNA sequence at modified positions. However, this slight difference has a great impact on various biological processes. In this manuscript, we investigated the function of RNA editing during human early embryo development. Through analyzing the sequencing data and computational biology, we found that RNA editing could regulate the alternative splicing of long-noncoding RNAs (lncRNAs) in human early embryo development. Here, lncRNAs are special kind of RNAs that do not translate into proteins, but have functions in the regulation of other genes. Alternative splicing is a process through which RNA molecules can be spliced into different transcripts after transcription. Thus, our results indicated that RNA editing could regulate the alternative splicing of lncRNAs and further affect the expression of downstream genes in human early embryo development. RNA editing could be the reason for the tremendous change of gene expression profile in human early embryo development which was found the previous researches.